Query 006424
Match_columns 645
No_of_seqs 878 out of 5214
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 23:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 4.8E-46 1E-50 383.1 38.2 355 173-527 239-613 (712)
2 KOG0271 Notchless-like WD40 re 100.0 8.1E-46 1.8E-50 346.5 24.2 328 191-637 106-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.4E-42 7.4E-47 322.3 24.1 322 97-536 109-474 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-40 5.6E-45 313.9 20.4 242 198-493 173-420 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-39 2.9E-44 309.1 18.5 248 189-489 206-458 (459)
6 KOG0286 G-protein beta subunit 100.0 3.1E-37 6.8E-42 279.8 31.0 285 190-489 45-343 (343)
7 KOG0279 G protein beta subunit 100.0 5.6E-36 1.2E-40 270.2 30.1 294 191-536 6-306 (315)
8 KOG0291 WD40-repeat-containing 100.0 7.9E-36 1.7E-40 301.8 33.8 380 186-639 131-550 (893)
9 KOG0279 G protein beta subunit 100.0 1.9E-36 4.1E-41 273.2 25.1 295 93-491 5-313 (315)
10 KOG0318 WD40 repeat stress pro 100.0 2.4E-35 5.3E-40 287.1 34.6 425 192-639 51-560 (603)
11 KOG0319 WD40-repeat-containing 100.0 9E-37 1.9E-41 308.5 23.8 415 191-637 95-617 (775)
12 KOG0318 WD40 repeat stress pro 100.0 3.6E-35 7.8E-40 286.0 30.1 373 188-638 178-601 (603)
13 KOG0293 WD40 repeat-containing 100.0 1.3E-35 2.9E-40 280.6 25.5 337 119-529 154-498 (519)
14 KOG0295 WD40 repeat-containing 100.0 7.5E-36 1.6E-40 278.6 21.2 301 136-494 47-367 (406)
15 KOG0282 mRNA splicing factor [ 100.0 4.6E-36 1E-40 289.9 17.8 277 189-526 203-487 (503)
16 KOG0315 G-protein beta subunit 100.0 6.1E-34 1.3E-38 252.7 27.4 273 169-495 16-292 (311)
17 KOG0273 Beta-transducin family 100.0 6.6E-34 1.4E-38 273.8 29.0 271 201-537 236-517 (524)
18 KOG0315 G-protein beta subunit 100.0 1E-33 2.2E-38 251.3 23.3 272 213-590 11-291 (311)
19 KOG0265 U5 snRNP-specific prot 100.0 2.2E-33 4.8E-38 255.9 25.6 281 193-535 40-330 (338)
20 KOG0286 G-protein beta subunit 100.0 2.6E-33 5.5E-38 254.4 25.7 287 278-585 46-343 (343)
21 KOG0296 Angio-associated migra 100.0 5.8E-33 1.3E-37 259.5 27.9 327 192-638 56-397 (399)
22 KOG0285 Pleiotropic regulator 100.0 9.1E-33 2E-37 257.0 25.4 303 184-547 135-440 (460)
23 KOG0291 WD40-repeat-containing 100.0 1.3E-31 2.7E-36 271.5 35.0 401 199-641 54-510 (893)
24 KOG0319 WD40-repeat-containing 100.0 3.2E-33 6.8E-38 282.9 21.7 378 199-639 61-577 (775)
25 KOG0263 Transcription initiati 100.0 1.7E-32 3.7E-37 280.8 23.4 275 196-493 374-651 (707)
26 KOG0273 Beta-transducin family 100.0 8.1E-32 1.8E-36 259.4 25.2 330 194-638 173-522 (524)
27 KOG0263 Transcription initiati 100.0 2.9E-32 6.3E-37 279.1 23.2 208 189-450 440-650 (707)
28 KOG0316 Conserved WD40 repeat- 100.0 1.6E-31 3.5E-36 235.4 24.6 273 193-533 10-290 (307)
29 KOG0284 Polyadenylation factor 100.0 1.5E-32 3.3E-37 260.0 18.5 296 186-547 82-381 (464)
30 KOG0284 Polyadenylation factor 100.0 5E-33 1.1E-37 263.2 14.8 246 194-493 132-382 (464)
31 KOG0306 WD40-repeat-containing 100.0 5.4E-31 1.2E-35 266.8 29.0 427 167-644 81-669 (888)
32 KOG0265 U5 snRNP-specific prot 100.0 2E-31 4.3E-36 243.2 22.4 299 90-489 34-336 (338)
33 KOG0293 WD40 repeat-containing 100.0 1E-31 2.2E-36 254.4 18.9 294 96-493 217-515 (519)
34 PLN00181 protein SPA1-RELATED; 100.0 9.5E-30 2.1E-34 288.7 37.7 303 195-586 478-792 (793)
35 KOG0645 WD40 repeat protein [G 100.0 1.7E-29 3.8E-34 227.3 31.4 231 279-533 6-251 (312)
36 cd00200 WD40 WD40 domain, foun 100.0 2E-29 4.3E-34 251.3 35.4 277 193-533 2-281 (289)
37 KOG0266 WD40 repeat-containing 100.0 6.9E-30 1.5E-34 269.5 32.9 282 193-532 151-441 (456)
38 KOG1407 WD40 repeat protein [F 100.0 5.7E-30 1.2E-34 229.2 25.8 280 194-536 14-295 (313)
39 KOG0295 WD40 repeat-containing 100.0 7.4E-31 1.6E-35 245.3 20.3 246 192-490 142-405 (406)
40 KOG0645 WD40 repeat protein [G 100.0 2.6E-29 5.6E-34 226.2 29.3 248 190-492 4-262 (312)
41 KOG0306 WD40-repeat-containing 100.0 1.1E-29 2.4E-34 257.4 30.1 291 281-588 367-665 (888)
42 KOG0282 mRNA splicing factor [ 100.0 2E-31 4.4E-36 257.8 14.6 293 276-637 203-503 (503)
43 KOG0266 WD40 repeat-containing 100.0 4.1E-29 8.8E-34 263.7 28.7 250 192-491 195-454 (456)
44 KOG0276 Vesicle coat complex C 100.0 1.1E-28 2.4E-33 245.2 29.2 248 192-494 5-260 (794)
45 KOG0281 Beta-TrCP (transducin 100.0 3E-30 6.5E-35 239.3 16.1 244 186-494 223-480 (499)
46 KOG0275 Conserved WD40 repeat- 100.0 1.3E-29 2.9E-34 232.9 19.4 286 198-536 211-502 (508)
47 KOG0292 Vesicle coat complex C 100.0 4.5E-29 9.7E-34 256.7 25.3 283 196-536 5-315 (1202)
48 cd00200 WD40 WD40 domain, foun 100.0 5E-28 1.1E-32 241.2 31.0 242 194-489 45-289 (289)
49 KOG0285 Pleiotropic regulator 100.0 4.7E-29 1E-33 232.4 21.6 293 90-493 138-441 (460)
50 KOG0277 Peroxisomal targeting 100.0 6.2E-29 1.3E-33 221.7 18.9 242 199-490 59-308 (311)
51 KOG0643 Translation initiation 100.0 7E-28 1.5E-32 216.4 25.5 287 196-538 6-312 (327)
52 KOG0281 Beta-TrCP (transducin 100.0 3.4E-29 7.4E-34 232.2 15.8 244 186-496 180-433 (499)
53 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-26 3E-31 214.0 31.6 284 190-533 4-295 (311)
54 PLN00181 protein SPA1-RELATED; 100.0 6.7E-27 1.5E-31 265.4 34.9 296 99-490 479-792 (793)
55 KOG0647 mRNA export protein (c 100.0 4E-27 8.7E-32 215.3 26.0 275 198-524 25-315 (347)
56 KOG0296 Angio-associated migra 100.0 2E-27 4.4E-32 222.5 24.6 243 193-491 99-398 (399)
57 KOG0278 Serine/threonine kinas 100.0 7.4E-29 1.6E-33 220.4 14.0 287 193-589 7-299 (334)
58 KOG0276 Vesicle coat complex C 100.0 3.8E-27 8.2E-32 234.3 26.6 247 188-487 43-295 (794)
59 KOG0640 mRNA cleavage stimulat 100.0 6.9E-28 1.5E-32 220.5 19.5 311 189-545 101-425 (430)
60 KOG0288 WD40 repeat protein Ti 100.0 9.9E-28 2.1E-32 227.8 21.0 245 192-488 211-458 (459)
61 KOG1539 WD repeat protein [Gen 100.0 4.5E-27 9.8E-32 241.3 27.5 382 187-640 189-649 (910)
62 KOG0640 mRNA cleavage stimulat 100.0 1.1E-27 2.4E-32 219.2 20.5 295 280-638 105-425 (430)
63 KOG1036 Mitotic spindle checkp 100.0 1E-26 2.2E-31 213.6 26.7 270 199-533 12-294 (323)
64 KOG0292 Vesicle coat complex C 100.0 3.5E-27 7.5E-32 242.9 24.9 245 192-491 43-321 (1202)
65 KOG0288 WD40 repeat protein Ti 100.0 3.6E-28 7.8E-33 230.8 16.2 280 192-534 167-452 (459)
66 KOG0643 Translation initiation 100.0 5.6E-27 1.2E-31 210.6 21.9 285 282-586 5-316 (327)
67 KOG0316 Conserved WD40 repeat- 100.0 4.3E-27 9.3E-32 207.5 20.7 285 94-489 8-297 (307)
68 KOG0772 Uncharacterized conser 100.0 3.2E-27 7E-32 229.9 21.6 290 194-539 161-483 (641)
69 KOG0277 Peroxisomal targeting 100.0 5.4E-27 1.2E-31 209.3 20.9 201 286-493 59-267 (311)
70 KOG0313 Microtubule binding pr 100.0 1.2E-26 2.5E-31 218.4 23.6 252 192-491 136-418 (423)
71 KOG0294 WD40 repeat-containing 100.0 2.5E-26 5.4E-31 211.3 24.9 243 192-493 35-283 (362)
72 KOG0278 Serine/threonine kinas 100.0 1.3E-27 2.7E-32 212.6 15.0 245 193-494 52-300 (334)
73 KOG0268 Sof1-like rRNA process 100.0 7.2E-28 1.6E-32 225.1 14.1 248 193-493 59-347 (433)
74 PTZ00421 coronin; Provisional 100.0 1.8E-25 3.9E-30 234.8 33.9 257 199-494 19-293 (493)
75 KOG0310 Conserved WD40 repeat- 100.0 3.9E-26 8.4E-31 221.8 25.6 247 194-494 62-312 (487)
76 KOG0313 Microtubule binding pr 100.0 4.4E-26 9.6E-31 214.5 24.6 265 198-530 103-406 (423)
77 KOG2096 WD40 repeat protein [G 99.9 8.8E-26 1.9E-30 207.6 25.6 303 173-489 59-400 (420)
78 KOG1407 WD40 repeat protein [F 99.9 1.4E-26 3.1E-31 207.4 19.4 204 281-493 14-221 (313)
79 PTZ00421 coronin; Provisional 99.9 3.2E-25 6.9E-30 233.0 31.6 234 195-473 70-315 (493)
80 KOG0299 U3 snoRNP-associated p 99.9 1.1E-25 2.4E-30 217.0 24.9 294 193-532 135-444 (479)
81 PTZ00420 coronin; Provisional 99.9 1.2E-24 2.6E-29 229.4 34.6 231 278-526 65-319 (568)
82 PTZ00420 coronin; Provisional 99.9 6.2E-25 1.4E-29 231.5 32.4 240 192-474 66-319 (568)
83 KOG2106 Uncharacterized conser 99.9 1.3E-24 2.9E-29 211.3 31.3 317 288-638 247-625 (626)
84 KOG0299 U3 snoRNP-associated p 99.9 9.3E-26 2E-30 217.5 22.9 308 96-488 135-453 (479)
85 KOG0289 mRNA splicing factor [ 99.9 4.8E-25 1E-29 210.8 26.3 272 201-536 220-499 (506)
86 KOG1063 RNA polymerase II elon 99.9 2.5E-25 5.4E-30 224.3 25.5 433 192-642 46-651 (764)
87 KOG0973 Histone transcription 99.9 2.9E-25 6.3E-30 235.6 26.8 295 198-538 11-350 (942)
88 KOG0300 WD40 repeat-containing 99.9 2.3E-25 5E-30 204.5 22.2 278 189-526 137-457 (481)
89 KOG0308 Conserved WD40 repeat- 99.9 1.6E-25 3.5E-30 224.1 22.8 247 199-493 20-287 (735)
90 KOG0289 mRNA splicing factor [ 99.9 4.9E-25 1.1E-29 210.7 25.0 251 187-490 248-505 (506)
91 KOG2048 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 214.5 33.8 250 197-493 22-277 (691)
92 KOG0973 Histone transcription 99.9 2.1E-25 4.5E-30 236.7 24.7 267 192-493 61-357 (942)
93 KOG0264 Nucleosome remodeling 99.9 2.1E-25 4.6E-30 215.3 21.9 255 198-493 122-406 (422)
94 KOG0305 Anaphase promoting com 99.9 4E-25 8.7E-30 223.5 24.7 240 199-493 216-463 (484)
95 KOG0300 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 205.9 18.9 282 192-493 182-478 (481)
96 KOG0310 Conserved WD40 repeat- 99.9 7.5E-25 1.6E-29 212.9 24.1 272 199-536 25-302 (487)
97 KOG0274 Cdc4 and related F-box 99.9 9E-25 1.9E-29 229.7 26.7 246 187-494 236-485 (537)
98 KOG1332 Vesicle coat complex C 99.9 2.1E-25 4.4E-30 198.2 18.1 249 196-491 7-286 (299)
99 KOG0275 Conserved WD40 repeat- 99.9 4.3E-26 9.4E-31 209.8 14.2 242 196-489 259-507 (508)
100 KOG0641 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 184.8 28.4 248 194-491 83-349 (350)
101 KOG0274 Cdc4 and related F-box 99.9 7.2E-24 1.6E-28 222.9 30.9 240 195-497 202-447 (537)
102 KOG0305 Anaphase promoting com 99.9 1.2E-24 2.7E-29 219.9 21.6 276 290-641 180-463 (484)
103 KOG0268 Sof1-like rRNA process 99.9 1.6E-25 3.6E-30 209.4 13.9 285 279-639 58-345 (433)
104 KOG0283 WD40 repeat-containing 99.9 4.8E-25 1E-29 228.4 18.3 287 94-449 257-576 (712)
105 KOG1408 WD40 repeat protein [F 99.9 7.2E-24 1.6E-28 213.8 24.9 375 195-639 73-671 (1080)
106 KOG0772 Uncharacterized conser 99.9 1.8E-24 4E-29 210.8 19.9 244 277-530 157-426 (641)
107 KOG1408 WD40 repeat protein [F 99.9 3.7E-24 8.1E-29 215.8 21.4 335 203-595 327-721 (1080)
108 KOG1063 RNA polymerase II elon 99.9 1.5E-23 3.3E-28 211.5 23.9 411 189-639 180-699 (764)
109 KOG1446 Histone H3 (Lys4) meth 99.9 8.7E-23 1.9E-27 188.9 26.9 251 278-590 5-265 (311)
110 KOG1273 WD40 repeat protein [G 99.9 2.1E-23 4.6E-28 191.8 22.3 294 203-571 26-337 (405)
111 KOG0641 WD40 repeat protein [G 99.9 7.6E-22 1.6E-26 173.3 30.9 305 190-534 23-340 (350)
112 KOG1539 WD repeat protein [Gen 99.9 1.7E-22 3.6E-27 208.0 30.1 363 203-638 162-605 (910)
113 KOG1274 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 210.7 29.1 269 197-515 10-283 (933)
114 KOG2106 Uncharacterized conser 99.9 1.6E-22 3.5E-27 196.9 26.8 324 201-586 247-625 (626)
115 KOG0269 WD40 repeat-containing 99.9 2.9E-24 6.4E-29 219.2 15.4 244 203-494 90-343 (839)
116 KOG0301 Phospholipase A2-activ 99.9 7.7E-23 1.7E-27 206.6 25.1 277 189-491 3-288 (745)
117 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 196.1 22.3 287 199-587 212-512 (514)
118 KOG0647 mRNA export protein (c 99.9 4.3E-22 9.2E-27 182.5 23.2 237 193-480 65-312 (347)
119 KOG4283 Transcription-coupled 99.9 4.4E-22 9.6E-27 181.5 22.7 311 197-586 40-364 (397)
120 KOG0264 Nucleosome remodeling 99.9 9.3E-23 2E-27 197.1 18.8 222 191-450 168-405 (422)
121 KOG0308 Conserved WD40 repeat- 99.9 6.1E-23 1.3E-27 205.7 17.3 250 192-493 65-329 (735)
122 KOG2096 WD40 repeat protein [G 99.9 3.2E-22 7E-27 184.3 20.2 283 280-585 79-400 (420)
123 KOG0302 Ribosome Assembly prot 99.9 6E-22 1.3E-26 186.6 21.6 252 197-483 148-431 (440)
124 KOG2445 Nuclear pore complex c 99.9 6E-21 1.3E-25 175.4 26.9 250 197-491 10-318 (361)
125 KOG1036 Mitotic spindle checkp 99.9 2.3E-21 5E-26 178.5 23.5 233 198-481 52-294 (323)
126 KOG2048 WD40 repeat protein [G 99.9 2.1E-20 4.5E-25 188.9 31.3 376 190-638 58-547 (691)
127 KOG0321 WD40 repeat-containing 99.9 9E-22 1.9E-26 197.0 21.0 295 205-551 54-396 (720)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-20 6E-25 187.8 32.0 252 193-494 24-282 (300)
129 KOG0269 WD40 repeat-containing 99.9 3.9E-22 8.4E-27 203.8 18.1 234 289-538 89-335 (839)
130 KOG1445 Tumor-specific antigen 99.9 1.2E-21 2.5E-26 195.4 20.8 155 372-534 630-785 (1012)
131 KOG0650 WD40 repeat nucleolar 99.9 2.1E-21 4.6E-26 192.8 21.9 289 191-488 391-732 (733)
132 KOG0301 Phospholipase A2-activ 99.9 9.4E-22 2E-26 198.8 19.7 201 278-493 5-210 (745)
133 KOG0270 WD40 repeat-containing 99.9 1.8E-21 3.8E-26 187.4 20.3 252 212-493 192-451 (463)
134 KOG0267 Microtubule severing p 99.9 7.5E-23 1.6E-27 207.4 10.8 235 194-482 22-259 (825)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.1E-20 1.3E-24 185.3 31.7 226 212-493 1-239 (300)
136 KOG0639 Transducin-like enhanc 99.9 2.9E-21 6.4E-26 187.8 20.0 261 198-512 417-684 (705)
137 KOG4227 WD40 repeat protein [G 99.9 3.3E-21 7.1E-26 182.0 19.6 263 189-493 45-324 (609)
138 KOG0646 WD40 repeat protein [G 99.9 4.7E-21 1E-25 185.6 21.1 232 199-476 80-334 (476)
139 KOG0639 Transducin-like enhanc 99.9 1.6E-21 3.5E-26 189.6 16.8 238 199-490 464-703 (705)
140 KOG1332 Vesicle coat complex C 99.9 5E-21 1.1E-25 170.4 16.6 210 191-448 47-285 (299)
141 KOG4328 WD40 protein [Function 99.9 2.6E-20 5.6E-25 179.9 21.7 262 190-498 176-457 (498)
142 KOG0646 WD40 repeat protein [G 99.9 9.8E-20 2.1E-24 176.5 25.5 202 286-497 80-313 (476)
143 KOG0294 WD40 repeat-containing 99.9 2.7E-20 5.9E-25 171.7 18.7 264 342-641 3-283 (362)
144 KOG0321 WD40 repeat-containing 99.9 4.4E-20 9.5E-25 185.1 20.8 249 196-493 96-393 (720)
145 KOG4328 WD40 protein [Function 99.9 8.8E-20 1.9E-24 176.3 21.4 207 279-491 178-399 (498)
146 KOG1034 Transcriptional repres 99.8 6E-20 1.3E-24 170.3 19.1 292 193-536 31-376 (385)
147 KOG0267 Microtubule severing p 99.8 6.4E-21 1.4E-25 193.5 11.5 235 283-536 24-261 (825)
148 KOG2445 Nuclear pore complex c 99.8 1.4E-18 3.1E-23 159.9 24.4 257 284-545 10-317 (361)
149 KOG1007 WD repeat protein TSSC 99.8 3E-19 6.5E-24 162.8 19.3 297 75-449 35-361 (370)
150 KOG0270 WD40 repeat-containing 99.8 2.2E-19 4.8E-24 173.0 17.4 205 196-450 239-450 (463)
151 KOG4283 Transcription-coupled 99.8 1E-18 2.2E-23 159.8 20.4 245 197-490 98-364 (397)
152 KOG2055 WD40 repeat protein [G 99.8 6.1E-19 1.3E-23 170.6 20.1 251 195-491 252-512 (514)
153 KOG0302 Ribosome Assembly prot 99.8 2.9E-19 6.2E-24 168.7 17.1 208 188-442 199-432 (440)
154 KOG0307 Vesicle coat complex C 99.8 5.5E-20 1.2E-24 196.6 13.7 249 201-494 65-330 (1049)
155 KOG1273 WD40 repeat protein [G 99.8 7.9E-19 1.7E-23 161.9 18.9 289 290-588 26-323 (405)
156 KOG1034 Transcriptional repres 99.8 6.1E-19 1.3E-23 163.7 17.8 244 199-491 88-383 (385)
157 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-18 3.2E-23 169.0 21.2 191 299-497 92-286 (673)
158 KOG1538 Uncharacterized conser 99.8 4.5E-18 9.8E-23 171.0 25.1 233 202-492 14-294 (1081)
159 KOG0303 Actin-binding protein 99.8 1.7E-18 3.6E-23 164.4 20.8 234 196-473 77-321 (472)
160 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-19 3E-24 179.4 13.6 258 195-493 289-563 (577)
161 KOG1274 WD40 repeat protein [G 99.8 4.9E-18 1.1E-22 177.5 24.8 276 284-584 10-297 (933)
162 KOG0650 WD40 repeat nucleolar 99.8 3.7E-18 8.1E-23 170.0 21.8 291 277-584 390-732 (733)
163 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.8E-21 168.5 34.9 371 195-640 60-443 (466)
164 KOG4378 Nuclear protein COP1 [ 99.8 1E-18 2.3E-23 170.1 16.6 215 202-473 84-305 (673)
165 KOG2919 Guanine nucleotide-bin 99.8 2.1E-17 4.5E-22 153.2 22.9 280 203-533 52-360 (406)
166 KOG0322 G-protein beta subunit 99.8 2.1E-18 4.6E-23 155.5 15.7 248 193-490 7-322 (323)
167 KOG1963 WD40 repeat protein [G 99.8 2.1E-17 4.6E-22 172.5 25.2 425 191-639 48-538 (792)
168 KOG1009 Chromatin assembly com 99.8 6.2E-18 1.3E-22 161.4 18.9 294 165-494 28-375 (434)
169 KOG0307 Vesicle coat complex C 99.8 8.6E-19 1.9E-23 187.6 13.4 201 287-494 64-287 (1049)
170 KOG1409 Uncharacterized conser 99.8 2.4E-19 5.2E-24 167.4 7.2 366 92-493 13-396 (404)
171 KOG1334 WD40 repeat protein [G 99.8 3.1E-18 6.8E-23 166.8 14.5 288 188-520 130-454 (559)
172 KOG0290 Conserved WD40 repeat- 99.8 8.7E-17 1.9E-21 147.0 22.5 230 285-525 94-347 (364)
173 KOG1188 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 154.2 18.5 191 299-494 41-245 (376)
174 KOG0303 Actin-binding protein 99.8 5.2E-17 1.1E-21 154.4 21.1 206 280-493 74-296 (472)
175 KOG4227 WD40 repeat protein [G 99.8 4.3E-17 9.3E-22 154.4 18.8 208 281-493 50-276 (609)
176 KOG1188 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 154.1 16.5 187 213-449 41-242 (376)
177 KOG0644 Uncharacterized conser 99.8 2E-18 4.3E-23 177.9 10.2 240 190-494 180-429 (1113)
178 KOG1009 Chromatin assembly com 99.8 3.4E-16 7.4E-21 149.6 24.0 291 200-538 13-367 (434)
179 KOG1007 WD repeat protein TSSC 99.8 9.7E-17 2.1E-21 146.5 19.2 257 192-492 55-362 (370)
180 KOG1240 Protein kinase contain 99.7 1.1E-15 2.4E-20 164.2 29.2 265 186-494 1034-1337(1431)
181 KOG1587 Cytoplasmic dynein int 99.7 2.4E-16 5.2E-21 164.8 23.1 250 199-493 241-518 (555)
182 KOG1963 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 158.8 27.8 340 198-589 203-585 (792)
183 KOG1310 WD40 repeat protein [G 99.7 4.3E-17 9.3E-22 160.8 13.8 243 186-494 36-306 (758)
184 KOG0322 G-protein beta subunit 99.7 5.4E-17 1.2E-21 146.5 13.1 296 277-639 4-323 (323)
185 COG2319 FOG: WD40 repeat [Gene 99.7 1.7E-14 3.7E-19 152.2 34.8 320 201-588 110-443 (466)
186 KOG2919 Guanine nucleotide-bin 99.7 1.8E-15 3.9E-20 140.5 22.0 275 290-576 52-360 (406)
187 KOG1517 Guanine nucleotide bin 99.7 2.3E-15 4.9E-20 159.4 25.2 285 196-535 1060-1373(1387)
188 KOG0649 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 135.5 19.5 246 201-493 11-276 (325)
189 KOG1587 Cytoplasmic dynein int 99.7 2.8E-15 6E-20 156.9 24.8 272 308-639 222-516 (555)
190 KOG0290 Conserved WD40 repeat- 99.7 2.1E-15 4.5E-20 138.1 19.3 240 198-481 94-356 (364)
191 PRK11028 6-phosphogluconolacto 99.7 1.1E-14 2.3E-19 148.9 26.6 283 301-639 5-304 (330)
192 PRK11028 6-phosphogluconolacto 99.7 3.2E-14 7E-19 145.4 29.8 249 199-492 33-305 (330)
193 KOG1524 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 149.0 19.3 261 198-488 12-283 (737)
194 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3.1E-20 146.5 14.6 192 204-449 148-354 (398)
195 KOG1523 Actin-related protein 99.7 1.3E-14 2.9E-19 134.8 20.3 244 196-484 6-271 (361)
196 PRK01742 tolB translocation pr 99.7 1.6E-14 3.5E-19 152.3 23.2 198 280-491 196-401 (429)
197 KOG1523 Actin-related protein 99.6 7.6E-14 1.6E-18 129.8 24.2 206 282-494 5-239 (361)
198 KOG2111 Uncharacterized conser 99.6 4.6E-13 9.9E-18 124.7 28.9 280 203-538 8-317 (346)
199 KOG1524 WD40 repeat-containing 99.6 4.4E-15 9.6E-20 146.4 16.5 257 285-576 12-276 (737)
200 KOG4497 Uncharacterized conser 99.6 4.4E-14 9.4E-19 131.6 22.1 297 205-572 13-418 (447)
201 KOG2110 Uncharacterized conser 99.6 2.2E-13 4.8E-18 129.2 26.4 236 200-494 5-251 (391)
202 KOG3881 Uncharacterized conser 99.6 3.9E-14 8.5E-19 135.2 21.3 263 199-508 54-337 (412)
203 KOG2321 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 140.1 22.3 290 187-493 39-345 (703)
204 KOG1445 Tumor-specific antigen 99.6 6.3E-15 1.4E-19 147.9 15.5 207 199-449 626-844 (1012)
205 KOG2394 WD40 protein DMR-N9 [G 99.6 3.7E-14 8.1E-19 140.3 20.6 167 297-471 183-384 (636)
206 KOG1517 Guanine nucleotide bin 99.6 4.5E-14 9.8E-19 149.8 21.6 254 201-493 1110-1383(1387)
207 KOG1538 Uncharacterized conser 99.6 1.4E-14 3.1E-19 146.1 16.9 272 289-588 14-294 (1081)
208 KOG0642 Cell-cycle nuclear pro 99.6 7.2E-15 1.6E-19 146.3 14.4 222 190-455 334-567 (577)
209 KOG2139 WD40 repeat protein [G 99.6 3.2E-13 7E-18 127.5 24.6 272 200-526 98-425 (445)
210 PRK01742 tolB translocation pr 99.6 4.4E-14 9.6E-19 149.0 20.6 234 307-566 183-425 (429)
211 KOG0771 Prolactin regulatory e 99.6 1.4E-14 3E-19 139.8 15.0 197 291-492 148-355 (398)
212 KOG1310 WD40 repeat protein [G 99.6 2.6E-14 5.7E-19 141.4 13.9 246 280-538 43-309 (758)
213 PRK03629 tolB translocation pr 99.6 2.8E-12 6E-17 135.0 29.0 200 281-493 192-408 (429)
214 KOG0644 Uncharacterized conser 99.5 9.1E-15 2E-19 151.3 8.3 282 278-589 181-470 (1113)
215 PRK05137 tolB translocation pr 99.5 4.2E-12 9.1E-17 134.5 28.8 203 279-493 193-414 (435)
216 PRK02889 tolB translocation pr 99.5 4.2E-12 9.1E-17 133.8 28.3 202 280-491 188-403 (427)
217 KOG4497 Uncharacterized conser 99.5 5.3E-12 1.1E-16 117.9 24.6 277 201-536 49-425 (447)
218 PRK04922 tolB translocation pr 99.5 3.1E-12 6.6E-17 135.4 25.9 202 280-493 196-413 (433)
219 KOG2139 WD40 repeat protein [G 99.5 7.6E-12 1.6E-16 118.4 25.2 256 200-491 140-431 (445)
220 KOG2110 Uncharacterized conser 99.5 9.2E-12 2E-16 118.4 25.7 233 287-539 5-244 (391)
221 PRK03629 tolB translocation pr 99.5 4.3E-12 9.4E-17 133.6 25.4 219 194-471 192-427 (429)
222 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.3E-18 134.8 10.8 230 201-489 130-360 (545)
223 KOG0649 WD40 repeat protein [G 99.5 3.1E-12 6.8E-17 114.6 19.2 187 202-447 116-314 (325)
224 PRK02889 tolB translocation pr 99.5 3.3E-12 7.2E-17 134.6 22.4 205 308-533 176-390 (427)
225 KOG1334 WD40 repeat protein [G 99.5 1.6E-13 3.4E-18 134.4 11.1 251 196-493 181-468 (559)
226 KOG1240 Protein kinase contain 99.5 3.9E-12 8.4E-17 137.5 22.5 181 313-494 1034-1228(1431)
227 PRK05137 tolB translocation pr 99.5 7.9E-12 1.7E-16 132.4 24.9 219 194-471 195-432 (435)
228 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3E-18 134.0 10.3 226 289-526 131-357 (545)
229 KOG2315 Predicted translation 99.5 3.5E-11 7.7E-16 120.4 26.1 320 201-644 35-395 (566)
230 PF08662 eIF2A: Eukaryotic tra 99.5 8.9E-12 1.9E-16 115.6 19.7 113 286-402 58-182 (194)
231 PRK04922 tolB translocation pr 99.4 1.2E-11 2.6E-16 130.8 23.3 220 194-471 197-432 (433)
232 KOG1354 Serine/threonine prote 99.4 1.8E-11 3.9E-16 115.1 20.9 264 199-494 24-362 (433)
233 PF08662 eIF2A: Eukaryotic tra 99.4 3.1E-11 6.6E-16 112.0 19.8 149 331-493 9-181 (194)
234 KOG3881 Uncharacterized conser 99.4 2.9E-11 6.2E-16 115.9 19.5 223 196-471 101-341 (412)
235 PF02239 Cytochrom_D1: Cytochr 99.4 2.1E-10 4.5E-15 117.3 25.9 292 277-589 26-349 (369)
236 KOG2041 WD40 repeat protein [G 99.4 4.4E-11 9.6E-16 122.3 20.4 249 200-482 14-279 (1189)
237 TIGR02800 propeller_TolB tol-p 99.4 3.2E-10 6.9E-15 120.1 27.7 200 280-491 182-397 (417)
238 PF02239 Cytochrom_D1: Cytochr 99.4 3.2E-10 6.9E-15 115.9 26.4 322 301-639 9-347 (369)
239 KOG2394 WD40 protein DMR-N9 [G 99.4 1.9E-11 4.1E-16 121.4 16.1 163 199-379 218-384 (636)
240 PRK04792 tolB translocation pr 99.3 3.6E-10 7.9E-15 119.6 26.5 202 281-493 211-427 (448)
241 KOG2321 WD40 repeat protein [G 99.3 9.1E-11 2E-15 117.5 20.1 207 285-495 49-306 (703)
242 TIGR02800 propeller_TolB tol-p 99.3 1.6E-10 3.6E-15 122.4 23.4 198 194-448 183-396 (417)
243 PRK00178 tolB translocation pr 99.3 4.2E-10 9.1E-15 119.5 25.8 206 276-493 187-408 (430)
244 PF10282 Lactonase: Lactonase, 99.3 1.9E-08 4.2E-13 103.0 36.6 250 201-492 37-323 (345)
245 PRK04792 tolB translocation pr 99.3 5.4E-10 1.2E-14 118.2 23.7 219 195-471 212-446 (448)
246 KOG2111 Uncharacterized conser 99.3 3.6E-09 7.8E-14 99.1 25.6 163 277-450 85-257 (346)
247 PRK00178 tolB translocation pr 99.3 8.3E-10 1.8E-14 117.2 24.3 220 194-471 192-427 (430)
248 KOG2315 Predicted translation 99.3 2.7E-09 5.8E-14 107.2 24.9 263 202-493 75-392 (566)
249 COG5354 Uncharacterized protei 99.3 1.4E-09 3E-14 107.9 22.2 319 199-589 31-397 (561)
250 PF10282 Lactonase: Lactonase, 99.2 1.4E-09 3.1E-14 111.3 23.1 282 301-587 2-322 (345)
251 KOG1354 Serine/threonine prote 99.2 1.7E-10 3.8E-15 108.6 12.9 235 201-449 85-359 (433)
252 KOG0974 WD-repeat protein WDR6 99.2 1E-09 2.2E-14 117.8 18.7 184 299-493 100-290 (967)
253 PRK01029 tolB translocation pr 99.2 1.1E-08 2.4E-13 107.4 26.6 208 277-493 174-405 (428)
254 KOG4547 WD40 repeat-containing 99.2 5.5E-09 1.2E-13 105.8 22.5 140 300-449 72-220 (541)
255 COG5354 Uncharacterized protei 99.2 8.6E-09 1.9E-13 102.4 22.9 324 286-644 31-400 (561)
256 PF04762 IKI3: IKI3 family; I 99.2 3.8E-08 8.1E-13 111.7 31.3 283 199-493 119-458 (928)
257 PRK01029 tolB translocation pr 99.2 6.1E-09 1.3E-13 109.4 23.1 206 308-532 165-389 (428)
258 KOG0280 Uncharacterized conser 99.1 2.6E-09 5.6E-14 98.9 17.2 197 290-493 124-335 (339)
259 KOG1409 Uncharacterized conser 99.1 1.8E-09 3.9E-14 102.0 16.5 253 189-494 13-273 (404)
260 KOG2314 Translation initiation 99.1 4.8E-09 1E-13 105.0 20.0 318 290-641 213-575 (698)
261 COG2706 3-carboxymuconate cycl 99.1 3.9E-07 8.4E-12 87.7 31.3 254 197-493 36-323 (346)
262 KOG1064 RAVE (regulator of V-A 99.1 4.9E-10 1.1E-14 125.6 13.4 188 284-493 2205-2400(2439)
263 COG2706 3-carboxymuconate cycl 99.1 4.1E-08 9E-13 94.2 23.0 279 307-587 15-321 (346)
264 KOG0974 WD-repeat protein WDR6 99.1 1.3E-09 2.8E-14 117.0 13.4 147 206-400 139-289 (967)
265 PLN02919 haloacid dehalogenase 99.0 2.7E-07 5.8E-12 106.9 32.1 205 289-494 625-891 (1057)
266 KOG4532 WD40-like repeat conta 99.0 6.2E-08 1.3E-12 88.7 21.0 228 298-533 84-322 (344)
267 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.8E-08 1E-12 97.6 21.9 269 308-589 27-332 (352)
268 KOG0280 Uncharacterized conser 99.0 6.8E-09 1.5E-13 96.2 14.3 198 203-446 124-330 (339)
269 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.3E-06 2.8E-11 87.5 31.0 245 208-495 53-334 (352)
270 KOG2314 Translation initiation 99.0 1.8E-07 4E-12 93.9 23.9 271 199-533 249-557 (698)
271 KOG1064 RAVE (regulator of V-A 99.0 2.8E-09 6E-14 119.8 11.9 189 196-451 2204-2400(2439)
272 KOG4190 Uncharacterized conser 99.0 1.3E-09 2.8E-14 108.6 8.2 246 193-489 728-986 (1034)
273 KOG4532 WD40-like repeat conta 99.0 1.4E-07 3.1E-12 86.4 20.5 189 300-492 130-332 (344)
274 COG4946 Uncharacterized protei 98.9 2.2E-06 4.7E-11 84.8 28.7 140 419-571 360-503 (668)
275 KOG1912 WD40 repeat protein [G 98.9 1.3E-07 2.9E-12 98.5 20.4 257 190-498 45-371 (1062)
276 KOG2041 WD40 repeat protein [G 98.9 9.1E-08 2E-12 98.6 18.9 249 187-491 58-337 (1189)
277 PF08450 SGL: SMP-30/Gluconola 98.9 7.3E-06 1.6E-10 79.9 31.8 221 205-480 4-244 (246)
278 TIGR03300 assembly_YfgL outer 98.9 8E-07 1.7E-11 92.7 26.7 186 298-495 105-301 (377)
279 PF04762 IKI3: IKI3 family; I 98.9 5.3E-07 1.1E-11 102.5 26.9 242 199-491 74-379 (928)
280 COG5170 CDC55 Serine/threonine 98.9 1.1E-08 2.3E-13 95.4 10.8 245 199-499 25-317 (460)
281 KOG4547 WD40 repeat-containing 98.9 3.5E-07 7.6E-12 93.0 21.3 183 300-492 7-221 (541)
282 PF15492 Nbas_N: Neuroblastoma 98.9 2.6E-06 5.5E-11 79.7 24.8 189 288-495 44-263 (282)
283 PRK04043 tolB translocation pr 98.8 1.7E-06 3.8E-11 90.3 26.7 202 277-493 178-402 (419)
284 KOG0309 Conserved WD40 repeat- 98.8 2.1E-08 4.5E-13 103.7 11.9 244 200-494 24-280 (1081)
285 COG4946 Uncharacterized protei 98.8 1.5E-06 3.3E-11 85.9 23.8 246 198-492 357-655 (668)
286 KOG1912 WD40 repeat protein [G 98.8 1.9E-06 4.1E-11 90.1 24.2 241 202-492 17-305 (1062)
287 PLN02919 haloacid dehalogenase 98.8 1.8E-06 3.9E-11 100.2 26.8 199 291-493 571-835 (1057)
288 PRK04043 tolB translocation pr 98.8 2.1E-06 4.5E-11 89.7 24.5 190 202-449 189-400 (419)
289 KOG0309 Conserved WD40 repeat- 98.7 8.2E-08 1.8E-12 99.4 11.6 205 280-493 107-341 (1081)
290 KOG4190 Uncharacterized conser 98.7 2.2E-08 4.8E-13 100.0 7.4 263 170-487 754-1032(1034)
291 KOG2695 WD40 repeat protein [G 98.7 6.2E-08 1.4E-12 91.8 8.2 148 344-496 228-381 (425)
292 KOG3914 WD repeat protein WDR4 98.7 3E-07 6.5E-12 89.3 12.5 160 202-404 64-228 (390)
293 KOG4714 Nucleoporin [Nuclear s 98.6 3.1E-07 6.7E-12 83.9 11.4 196 290-492 39-255 (319)
294 KOG4714 Nucleoporin [Nuclear s 98.6 3.9E-07 8.5E-12 83.3 11.8 92 309-400 160-255 (319)
295 PF00400 WD40: WD domain, G-be 98.6 6.9E-08 1.5E-12 63.7 5.2 37 192-228 3-39 (39)
296 KOG1832 HIV-1 Vpr-binding prot 98.6 3.4E-08 7.4E-13 104.0 4.6 227 183-479 1084-1319(1516)
297 COG5170 CDC55 Serine/threonine 98.6 2E-07 4.3E-12 87.1 8.9 234 201-447 86-365 (460)
298 TIGR03300 assembly_YfgL outer 98.6 3.2E-05 6.9E-10 80.6 26.5 174 298-488 190-376 (377)
299 KOG0882 Cyclophilin-related pe 98.6 1.3E-06 2.8E-11 85.9 14.0 286 199-529 8-369 (558)
300 PF13360 PQQ_2: PQQ-like domai 98.5 4.2E-05 9.1E-10 74.1 24.5 190 297-495 35-234 (238)
301 PF08450 SGL: SMP-30/Gluconola 98.5 0.00026 5.6E-09 68.9 29.7 187 292-491 4-213 (246)
302 KOG3914 WD repeat protein WDR4 98.5 2.9E-06 6.3E-11 82.6 14.3 150 293-451 68-225 (390)
303 PF15492 Nbas_N: Neuroblastoma 98.5 8.9E-05 1.9E-09 69.6 22.6 188 203-452 46-262 (282)
304 KOG0882 Cyclophilin-related pe 98.4 1.8E-06 3.9E-11 84.9 11.6 203 286-495 8-235 (558)
305 PF07433 DUF1513: Protein of u 98.4 0.0004 8.7E-09 67.4 27.1 232 203-485 7-279 (305)
306 KOG2066 Vacuolar assembly/sort 98.4 1.8E-05 3.9E-10 83.6 18.2 186 200-449 39-233 (846)
307 PRK11138 outer membrane biogen 98.4 0.00017 3.6E-09 75.6 26.0 191 298-496 120-317 (394)
308 KOG2114 Vacuolar assembly/sort 98.4 0.00014 3E-09 77.7 24.7 193 202-451 27-245 (933)
309 KOG1275 PAB-dependent poly(A) 98.4 8.1E-06 1.7E-10 87.2 15.4 150 289-447 179-340 (1118)
310 KOG1275 PAB-dependent poly(A) 98.3 5.8E-06 1.3E-10 88.2 13.3 162 189-398 166-341 (1118)
311 KOG2695 WD40 repeat protein [G 98.3 1.8E-06 3.9E-11 82.2 8.3 153 293-450 217-377 (425)
312 KOG1920 IkappaB kinase complex 98.3 0.00013 2.9E-09 80.8 23.1 197 201-450 69-323 (1265)
313 PF00400 WD40: WD domain, G-be 98.3 1.6E-06 3.5E-11 57.1 5.1 36 279-314 3-39 (39)
314 KOG1645 RING-finger-containing 98.3 8.5E-05 1.8E-09 72.5 18.7 84 278-361 184-269 (463)
315 KOG2066 Vacuolar assembly/sort 98.3 8.8E-06 1.9E-10 86.0 12.8 148 326-495 38-191 (846)
316 PF07433 DUF1513: Protein of u 98.2 0.0022 4.8E-08 62.3 27.1 202 291-497 8-253 (305)
317 PF11768 DUF3312: Protein of u 98.2 0.00031 6.6E-09 72.7 21.0 115 325-449 203-329 (545)
318 KOG1832 HIV-1 Vpr-binding prot 98.2 1.8E-06 3.9E-11 91.4 4.9 200 277-494 1091-1294(1516)
319 PRK02888 nitrous-oxide reducta 98.1 0.0028 6.1E-08 67.4 27.3 177 303-492 210-405 (635)
320 PF08596 Lgl_C: Lethal giant l 98.1 0.0011 2.3E-08 68.5 23.3 265 202-481 3-326 (395)
321 PF13360 PQQ_2: PQQ-like domai 98.1 0.0023 4.9E-08 61.9 24.8 184 307-497 2-197 (238)
322 PF04053 Coatomer_WDAD: Coatom 98.1 0.00076 1.7E-08 70.5 22.3 225 198-493 30-264 (443)
323 COG0823 TolB Periplasmic compo 98.1 0.00079 1.7E-08 70.1 22.0 196 277-482 182-390 (425)
324 KOG1920 IkappaB kinase complex 98.1 0.00024 5.3E-09 78.8 18.6 244 327-589 68-324 (1265)
325 KOG3617 WD40 and TPR repeat-co 98.1 0.00035 7.7E-09 74.3 19.0 235 289-529 61-371 (1416)
326 PF11768 DUF3312: Protein of u 98.0 0.00047 1E-08 71.3 19.5 74 418-494 259-332 (545)
327 PRK11138 outer membrane biogen 98.0 0.0024 5.3E-08 66.9 25.8 178 299-490 206-393 (394)
328 KOG1645 RING-finger-containing 98.0 9.2E-05 2E-09 72.3 12.9 131 352-492 175-316 (463)
329 KOG1008 Uncharacterized conser 98.0 2.7E-06 5.8E-11 87.4 2.6 198 287-493 56-277 (783)
330 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0059 1.3E-07 62.8 27.0 231 287-533 42-347 (353)
331 KOG1008 Uncharacterized conser 98.0 4.8E-06 1E-10 85.6 4.0 202 201-449 57-275 (783)
332 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.015 3.3E-07 54.1 25.6 105 300-406 25-130 (354)
333 KOG2114 Vacuolar assembly/sort 98.0 0.0015 3.3E-08 70.1 22.0 194 289-493 27-245 (933)
334 KOG3617 WD40 and TPR repeat-co 98.0 0.00013 2.8E-09 77.5 13.7 69 203-316 62-131 (1416)
335 PF06977 SdiA-regulated: SdiA- 97.9 0.0083 1.8E-07 57.5 23.6 205 281-488 15-247 (248)
336 PF08596 Lgl_C: Lethal giant l 97.9 0.0063 1.4E-07 62.8 24.5 205 289-495 3-294 (395)
337 PF03178 CPSF_A: CPSF A subuni 97.9 0.0058 1.2E-07 62.1 24.2 171 308-487 62-261 (321)
338 PF03178 CPSF_A: CPSF A subuni 97.8 0.026 5.5E-07 57.3 27.6 200 308-519 2-230 (321)
339 PF14583 Pectate_lyase22: Olig 97.8 0.0092 2E-07 60.0 23.1 184 293-482 86-303 (386)
340 PF04841 Vps16_N: Vps16, N-ter 97.7 0.017 3.7E-07 60.4 25.6 174 309-493 62-248 (410)
341 KOG3621 WD40 repeat-containing 97.7 0.0049 1.1E-07 65.0 20.9 135 199-378 32-179 (726)
342 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0019 4.2E-08 66.4 18.4 82 306-389 21-120 (353)
343 PRK02888 nitrous-oxide reducta 97.7 0.003 6.5E-08 67.2 19.4 108 339-450 287-405 (635)
344 KOG3621 WD40 repeat-containing 97.7 0.001 2.2E-08 69.9 15.5 141 327-470 33-179 (726)
345 PF08553 VID27: VID27 cytoplas 97.5 0.0024 5.2E-08 70.4 16.0 147 339-490 492-646 (794)
346 PF00780 CNH: CNH domain; Int 97.5 0.082 1.8E-06 52.3 25.3 192 289-495 37-259 (275)
347 cd00216 PQQ_DH Dehydrogenases 97.5 0.071 1.5E-06 57.5 26.0 182 306-501 173-434 (488)
348 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.01 2.2E-07 48.2 14.4 102 203-354 2-110 (111)
349 PF06977 SdiA-regulated: SdiA- 97.4 0.037 8.1E-07 53.0 20.9 202 194-446 15-247 (248)
350 COG3391 Uncharacterized conser 97.4 0.061 1.3E-06 55.9 24.3 200 291-494 77-286 (381)
351 COG3386 Gluconolactonase [Carb 97.4 0.065 1.4E-06 53.3 23.1 175 296-481 75-275 (307)
352 PF02897 Peptidase_S9_N: Proly 97.3 0.29 6.2E-06 51.7 29.9 241 202-494 125-407 (414)
353 smart00320 WD40 WD40 repeats. 97.3 0.00035 7.7E-09 44.7 4.3 36 193-228 5-40 (40)
354 PF06433 Me-amine-dh_H: Methyl 97.3 0.21 4.5E-06 49.5 27.0 199 293-495 100-324 (342)
355 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.17 3.6E-06 47.4 22.6 101 298-399 63-165 (354)
356 COG3391 Uncharacterized conser 97.2 0.19 4.1E-06 52.2 25.3 156 289-452 117-286 (381)
357 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.017 3.7E-07 46.9 13.3 103 330-445 2-110 (111)
358 PF04841 Vps16_N: Vps16, N-ter 97.2 0.4 8.6E-06 50.3 28.1 194 277-489 70-285 (410)
359 PF08553 VID27: VID27 cytoplas 97.2 0.059 1.3E-06 59.9 21.6 119 277-398 514-646 (794)
360 KOG4640 Anaphase-promoting com 97.2 0.0019 4.1E-08 67.1 9.6 97 326-429 19-116 (665)
361 COG0823 TolB Periplasmic compo 97.1 0.024 5.3E-07 59.2 16.6 156 327-493 192-360 (425)
362 KOG2395 Protein involved in va 97.0 0.018 3.9E-07 59.0 14.4 137 300-447 348-498 (644)
363 cd00216 PQQ_DH Dehydrogenases 97.0 0.46 1E-05 51.2 26.1 192 299-500 111-383 (488)
364 KOG2395 Protein involved in va 97.0 0.015 3.2E-07 59.5 13.2 148 339-490 344-499 (644)
365 KOG4640 Anaphase-promoting com 96.9 0.0037 8.1E-08 65.0 9.0 92 200-337 20-115 (665)
366 PRK13616 lipoprotein LpqB; Pro 96.9 0.15 3.4E-06 55.7 21.7 185 288-485 350-562 (591)
367 PF04053 Coatomer_WDAD: Coatom 96.7 0.2 4.4E-06 52.6 19.7 134 299-449 117-262 (443)
368 smart00320 WD40 WD40 repeats. 96.6 0.0039 8.4E-08 39.5 4.6 36 279-314 4-40 (40)
369 KOG4441 Proteins containing BT 96.6 0.2 4.3E-06 54.8 19.8 191 291-493 326-548 (571)
370 COG3204 Uncharacterized protei 96.4 0.71 1.5E-05 44.4 19.6 165 284-449 82-263 (316)
371 KOG2444 WD40 repeat protein [G 96.4 0.005 1.1E-07 56.3 5.2 140 343-492 33-178 (238)
372 PF14727 PHTB1_N: PTHB1 N-term 96.3 1.6 3.5E-05 45.3 26.1 182 300-493 147-362 (418)
373 PRK13616 lipoprotein LpqB; Pro 96.3 0.4 8.6E-06 52.5 19.7 105 290-399 399-525 (591)
374 COG3204 Uncharacterized protei 96.3 1.2 2.6E-05 42.9 20.3 160 196-402 81-266 (316)
375 PF05694 SBP56: 56kDa selenium 96.2 1.9 4.1E-05 44.3 23.3 183 297-480 139-392 (461)
376 PF02897 Peptidase_S9_N: Proly 96.1 2.2 4.9E-05 44.9 29.0 192 290-491 126-357 (414)
377 KOG3630 Nuclear pore complex, 96.1 0.046 1E-06 61.0 11.4 155 370-531 101-261 (1405)
378 PF00780 CNH: CNH domain; Int 95.9 2 4.4E-05 42.2 24.7 138 298-449 7-165 (275)
379 COG3386 Gluconolactonase [Carb 95.8 2.3 5E-05 42.4 22.5 186 294-491 31-243 (307)
380 PHA02713 hypothetical protein; 95.8 0.49 1.1E-05 51.8 17.8 184 299-494 305-536 (557)
381 PF15390 DUF4613: Domain of un 95.7 1.1 2.4E-05 47.2 18.3 151 287-449 19-186 (671)
382 COG3490 Uncharacterized protei 95.6 0.98 2.1E-05 43.1 16.2 184 207-447 120-346 (366)
383 PF06433 Me-amine-dh_H: Methyl 95.6 1.2 2.6E-05 44.3 17.6 194 205-404 99-325 (342)
384 PF12894 Apc4_WD40: Anaphase-p 95.6 0.058 1.2E-06 36.6 6.0 32 460-491 10-41 (47)
385 PF12894 Apc4_WD40: Anaphase-p 95.5 0.048 1E-06 37.0 5.4 31 200-230 11-41 (47)
386 PF14583 Pectate_lyase22: Olig 95.5 3.4 7.4E-05 42.0 27.2 173 308-490 168-380 (386)
387 KOG2079 Vacuolar assembly/sort 95.4 0.31 6.6E-06 54.6 14.1 98 299-399 100-203 (1206)
388 PF05096 Glu_cyclase_2: Glutam 95.3 2.8 6.1E-05 40.3 21.8 187 202-437 46-249 (264)
389 PF14870 PSII_BNR: Photosynthe 95.0 4.3 9.4E-05 40.3 24.2 230 286-537 15-256 (302)
390 TIGR03074 PQQ_membr_DH membran 94.9 8.6 0.00019 43.6 24.0 109 298-406 194-351 (764)
391 KOG2444 WD40 repeat protein [G 94.9 0.1 2.2E-06 48.0 7.3 58 300-358 116-177 (238)
392 KOG3630 Nuclear pore complex, 94.8 0.32 7E-06 54.7 12.0 138 289-430 102-255 (1405)
393 KOG2079 Vacuolar assembly/sort 94.6 0.17 3.8E-06 56.5 9.5 102 339-447 98-201 (1206)
394 TIGR02604 Piru_Ver_Nterm putat 94.5 1.3 2.8E-05 45.8 15.5 99 288-388 72-202 (367)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 9.3 0.0002 41.6 27.0 96 307-403 180-337 (527)
396 KOG4441 Proteins containing BT 94.2 2.9 6.3E-05 45.9 18.1 183 300-494 287-502 (571)
397 COG3490 Uncharacterized protei 94.2 2.7 5.9E-05 40.2 15.1 114 318-438 58-180 (366)
398 PF15390 DUF4613: Domain of un 94.1 1.5 3.2E-05 46.3 14.4 155 328-491 20-186 (671)
399 PF14781 BBS2_N: Ciliary BBSom 94.1 1.9 4.1E-05 36.5 12.4 106 294-401 5-127 (136)
400 PHA03098 kelch-like protein; P 94.1 3.2 6.8E-05 45.5 18.3 182 299-493 296-513 (534)
401 PF10647 Gmad1: Lipoprotein Lp 94.0 6.3 0.00014 38.3 21.2 158 329-493 25-199 (253)
402 PF05694 SBP56: 56kDa selenium 93.9 1.8 3.9E-05 44.4 14.3 101 306-406 220-349 (461)
403 PF14727 PHTB1_N: PTHB1 N-term 93.5 7.7 0.00017 40.4 18.6 149 339-492 36-205 (418)
404 PF07995 GSDH: Glucose / Sorbo 93.5 9.7 0.00021 38.7 23.8 68 419-486 253-330 (331)
405 PHA02713 hypothetical protein; 93.5 7.7 0.00017 42.6 19.8 93 309-403 273-379 (557)
406 PF14870 PSII_BNR: Photosynthe 93.4 9 0.0002 38.1 28.0 190 289-494 63-263 (302)
407 PF03022 MRJP: Major royal jel 93.2 9.6 0.00021 37.7 22.0 166 309-479 35-253 (287)
408 PF05096 Glu_cyclase_2: Glutam 93.1 8.7 0.00019 37.0 24.0 184 289-480 46-249 (264)
409 PF10647 Gmad1: Lipoprotein Lp 93.1 9.2 0.0002 37.1 22.3 149 289-439 25-185 (253)
410 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.0 16 0.00034 39.8 22.1 194 298-495 69-337 (527)
411 PF12234 Rav1p_C: RAVE protein 92.8 4.5 9.8E-05 44.2 16.1 110 331-447 33-154 (631)
412 PF10168 Nup88: Nuclear pore c 92.6 3.1 6.6E-05 46.7 15.0 81 369-449 84-179 (717)
413 TIGR02604 Piru_Ver_Nterm putat 92.5 6.6 0.00014 40.6 16.8 148 328-480 14-202 (367)
414 COG5167 VID27 Protein involved 92.2 2.5 5.3E-05 43.8 12.3 147 339-491 478-632 (776)
415 PF10313 DUF2415: Uncharacteri 92.1 0.51 1.1E-05 31.0 4.9 31 201-231 1-34 (43)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 91.9 18 0.00039 37.7 23.3 52 328-379 57-118 (415)
417 KOG1897 Damage-specific DNA bi 91.7 28 0.0006 39.6 27.4 183 300-494 686-901 (1096)
418 PHA02790 Kelch-like protein; P 91.7 9.3 0.0002 41.1 17.3 103 300-404 274-389 (480)
419 PF08728 CRT10: CRT10; InterP 91.7 11 0.00023 41.8 17.4 110 288-398 101-245 (717)
420 KOG1916 Nuclear protein, conta 91.6 0.062 1.3E-06 58.6 0.4 118 366-491 129-265 (1283)
421 PF10313 DUF2415: Uncharacteri 91.5 0.61 1.3E-05 30.7 4.8 32 328-359 1-34 (43)
422 KOG2280 Vacuolar assembly/sort 91.4 24 0.00053 38.8 19.1 183 277-472 73-270 (829)
423 KOG2280 Vacuolar assembly/sort 91.3 4 8.6E-05 44.5 13.2 198 288-494 44-249 (829)
424 PRK13684 Ycf48-like protein; P 91.3 12 0.00026 38.0 16.7 107 287-397 214-329 (334)
425 PRK10115 protease 2; Provision 91.2 30 0.00066 39.1 31.1 194 291-494 175-397 (686)
426 PF12234 Rav1p_C: RAVE protein 91.0 6.9 0.00015 42.8 15.1 113 420-534 31-149 (631)
427 PHA03098 kelch-like protein; P 91.0 11 0.00024 41.2 17.4 102 300-404 345-469 (534)
428 PF10168 Nup88: Nuclear pore c 90.7 33 0.00072 38.7 22.0 72 287-359 84-180 (717)
429 PF14761 HPS3_N: Hermansky-Pud 90.6 14 0.00031 34.2 16.0 144 341-490 29-213 (215)
430 TIGR03118 PEPCTERM_chp_1 conse 90.5 18 0.0004 35.4 20.3 203 289-494 24-282 (336)
431 KOG1897 Damage-specific DNA bi 90.4 37 0.0008 38.7 29.1 156 329-493 450-615 (1096)
432 PF08728 CRT10: CRT10; InterP 90.1 11 0.00024 41.7 15.7 119 371-490 102-245 (717)
433 COG5276 Uncharacterized conser 89.6 21 0.00046 34.7 27.4 194 287-494 86-288 (370)
434 KOG1916 Nuclear protein, conta 89.4 0.2 4.3E-06 54.8 2.0 116 282-399 127-265 (1283)
435 COG5167 VID27 Protein involved 89.1 4.6 0.0001 41.9 11.1 138 300-448 482-631 (776)
436 PF07569 Hira: TUP1-like enhan 88.7 2 4.3E-05 40.6 8.0 71 377-449 18-95 (219)
437 PHA02790 Kelch-like protein; P 88.6 25 0.00055 37.8 17.4 102 298-404 318-428 (480)
438 PF07569 Hira: TUP1-like enhan 87.8 4.6 9.9E-05 38.2 9.8 72 327-402 12-98 (219)
439 COG3292 Predicted periplasmic 87.8 33 0.00071 36.6 16.3 149 287-447 164-316 (671)
440 PF07995 GSDH: Glucose / Sorbo 87.7 13 0.00027 37.9 13.6 110 371-482 3-134 (331)
441 TIGR03548 mutarot_permut cycli 87.6 34 0.00073 34.6 17.9 104 298-403 73-198 (323)
442 COG5290 IkappaB kinase complex 86.6 44 0.00096 37.1 16.9 95 372-473 249-348 (1243)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 86.6 9 0.00019 39.9 11.8 46 188-233 295-340 (415)
444 KOG4460 Nuclear pore complex, 86.5 16 0.00035 38.3 13.1 85 371-455 105-204 (741)
445 KOG2377 Uncharacterized conser 86.5 18 0.00039 37.3 13.2 108 367-480 64-172 (657)
446 COG5276 Uncharacterized conser 85.6 37 0.00081 33.1 23.9 160 321-494 80-244 (370)
447 TIGR03606 non_repeat_PQQ dehyd 85.5 53 0.0011 34.8 18.5 53 328-381 30-90 (454)
448 KOG4499 Ca2+-binding protein R 85.4 33 0.00071 32.2 16.5 186 300-496 29-246 (310)
449 KOG1900 Nuclear pore complex, 84.9 10 0.00022 44.3 11.9 165 324-492 75-273 (1311)
450 PF02333 Phytase: Phytase; In 84.8 50 0.0011 33.9 24.2 140 308-449 127-290 (381)
451 KOG4499 Ca2+-binding protein R 84.3 37 0.0008 31.9 19.2 169 299-470 72-262 (310)
452 KOG2377 Uncharacterized conser 84.1 26 0.00057 36.1 13.1 106 380-493 32-142 (657)
453 PF13449 Phytase-like: Esteras 83.1 56 0.0012 33.1 18.3 147 328-478 20-231 (326)
454 KOG1983 Tomosyn and related SN 82.2 21 0.00045 42.0 13.5 35 368-402 34-68 (993)
455 PF14781 BBS2_N: Ciliary BBSom 81.6 32 0.0007 29.3 12.7 120 204-363 2-130 (136)
456 PF13449 Phytase-like: Esteras 81.4 65 0.0014 32.6 15.8 110 370-480 20-165 (326)
457 TIGR03074 PQQ_membr_DH membran 81.1 1.1E+02 0.0024 35.0 22.9 66 299-364 261-350 (764)
458 KOG3616 Selective LIM binding 80.5 19 0.00042 39.3 11.3 73 324-399 11-83 (1636)
459 COG4590 ABC-type uncharacteriz 79.8 9.9 0.00021 39.0 8.5 102 300-403 282-390 (733)
460 TIGR03606 non_repeat_PQQ dehyd 79.6 87 0.0019 33.2 15.8 114 368-482 28-166 (454)
461 KOG4460 Nuclear pore complex, 79.2 18 0.00039 37.9 10.2 27 201-227 104-130 (741)
462 KOG2247 WD40 repeat-containing 78.2 0.39 8.4E-06 49.2 -1.7 144 331-485 38-182 (615)
463 KOG2247 WD40 repeat-containing 78.2 0.33 7E-06 49.7 -2.2 137 199-385 33-175 (615)
464 smart00036 CNH Domain found in 77.8 79 0.0017 31.6 27.5 201 286-495 41-274 (302)
465 COG5290 IkappaB kinase complex 77.6 62 0.0013 36.0 13.9 98 332-438 251-356 (1243)
466 PF02333 Phytase: Phytase; In 77.0 94 0.002 32.0 19.1 150 339-493 67-239 (381)
467 PRK10115 protease 2; Provision 76.3 1.4E+02 0.0031 33.8 24.9 193 288-491 127-344 (686)
468 PF10214 Rrn6: RNA polymerase 76.2 1.5E+02 0.0033 34.1 22.6 110 288-401 146-278 (765)
469 PF12657 TFIIIC_delta: Transcr 76.2 24 0.00053 31.8 9.6 29 288-316 86-121 (173)
470 KOG1898 Splicing factor 3b, su 76.1 1.6E+02 0.0035 34.2 18.8 172 310-493 855-1050(1205)
471 COG4590 ABC-type uncharacteriz 73.9 25 0.00055 36.2 9.5 163 326-495 219-390 (733)
472 KOG1900 Nuclear pore complex, 73.8 25 0.00054 41.3 10.5 141 304-449 95-272 (1311)
473 PF10214 Rrn6: RNA polymerase 73.7 1.8E+02 0.0038 33.6 25.2 159 285-450 77-277 (765)
474 PF14761 HPS3_N: Hermansky-Pud 73.7 78 0.0017 29.5 18.0 106 296-403 26-167 (215)
475 TIGR03547 muta_rot_YjhT mutatr 73.1 1.1E+02 0.0024 31.1 22.5 41 350-390 168-210 (346)
476 PRK13684 Ycf48-like protein; P 73.1 1.1E+02 0.0024 31.0 23.7 155 327-490 172-330 (334)
477 PLN02153 epithiospecifier prot 71.9 1.2E+02 0.0026 30.8 21.9 102 299-404 34-172 (341)
478 PF12657 TFIIIC_delta: Transcr 71.8 22 0.00049 32.1 8.2 32 370-401 86-123 (173)
479 KOG1983 Tomosyn and related SN 71.7 39 0.00084 39.8 11.9 69 419-494 199-267 (993)
480 PF12768 Rax2: Cortical protei 71.1 1E+02 0.0022 30.3 13.0 90 308-398 16-122 (281)
481 KOG3616 Selective LIM binding 70.7 91 0.002 34.4 13.1 31 201-231 15-45 (1636)
482 PLN02193 nitrile-specifier pro 70.2 1.6E+02 0.0035 31.6 21.6 144 299-450 177-352 (470)
483 COG3823 Glutamine cyclotransfe 70.1 93 0.002 28.8 13.2 51 306-359 109-159 (262)
484 PLN00033 photosystem II stabil 69.2 1.5E+02 0.0033 30.9 27.8 150 332-488 243-396 (398)
485 PF07676 PD40: WD40-like Beta 68.1 17 0.00037 23.1 4.9 30 198-227 6-38 (39)
486 COG4257 Vgb Streptogramin lyas 67.1 1.3E+02 0.0028 29.3 16.1 191 331-529 65-259 (353)
487 PF11635 Med16: Mediator compl 66.6 2.4E+02 0.0053 32.4 20.4 195 342-536 64-343 (753)
488 PF07250 Glyoxal_oxid_N: Glyox 66.4 70 0.0015 30.7 10.5 133 310-444 48-194 (243)
489 KOG1896 mRNA cleavage and poly 65.6 83 0.0018 36.9 12.2 140 300-447 1048-1211(1366)
490 PLN02153 epithiospecifier prot 65.5 1.6E+02 0.0035 29.9 23.7 103 299-404 87-230 (341)
491 PF11635 Med16: Mediator compl 64.9 2.6E+02 0.0057 32.1 19.2 67 419-486 260-345 (753)
492 PLN00033 photosystem II stabil 64.8 1.8E+02 0.004 30.3 29.8 108 372-489 241-354 (398)
493 TIGR02171 Fb_sc_TIGR02171 Fibr 64.1 50 0.0011 37.6 10.2 90 340-435 319-415 (912)
494 PF08801 Nucleoporin_N: Nup133 64.0 1.1E+02 0.0023 32.3 12.7 31 419-450 190-220 (422)
495 TIGR02276 beta_rpt_yvtn 40-res 63.7 29 0.00062 22.2 5.4 35 301-335 7-41 (42)
496 KOG1896 mRNA cleavage and poly 63.6 1.3E+02 0.0028 35.4 13.2 109 286-399 1096-1213(1366)
497 PF12768 Rax2: Cortical protei 63.4 1.6E+02 0.0034 29.1 13.4 97 350-450 16-124 (281)
498 PF07676 PD40: WD40-like Beta 63.3 26 0.00056 22.2 5.0 28 419-446 9-38 (39)
499 PRK14131 N-acetylneuraminic ac 62.0 2E+02 0.0043 29.7 22.6 38 351-389 190-230 (376)
500 PF08801 Nucleoporin_N: Nup133 61.2 2.2E+02 0.0048 30.0 16.2 32 461-492 189-220 (422)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-46 Score=383.11 Aligned_cols=355 Identities=47% Similarity=0.904 Sum_probs=286.6
Q ss_pred chhHhhhcccccccccccccccccc-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC---------
Q 006424 173 NKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--------- 242 (645)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------- 242 (645)
..+++.+.++...++..++..+.+. +|.++|++|.||+||+|||+||.||.|+||.+...+.........
T Consensus 239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~ 318 (712)
T KOG0283|consen 239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA 318 (712)
T ss_pred ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence 6677888889999999999999999 999999999999999999999999999999987733321111110
Q ss_pred -CCcccCC-----CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC
Q 006424 243 -GGFGSNA-----KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG 316 (645)
Q Consensus 243 -~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~ 316 (645)
+...... ..+................+...+.+..++++.+.||.+.|.+|.|+.+++|+++|.|.+|++|++.
T Consensus 319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~ 398 (712)
T KOG0283|consen 319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG 398 (712)
T ss_pred ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC
Confidence 0000000 0111122222222233566677777889999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006424 317 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 396 (645)
Q Consensus 317 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iw 396 (645)
..+|+..|.|.+.|+|++|+|.|.++|++|+.||.|+||++...++..+.....-|++++|.|||++.++|+.+|.+++|
T Consensus 399 ~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 399 RKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred CcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC--CcceeeEeecCCCCCeEEEEEecCC
Q 006424 397 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 397 d~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~--~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
+..+.+.... .+..+.........|+.++|.|.....+++.+.|..|+|+|+ ...+..|++......-....|+.||
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence 9998876554 444554444444589999999987677999999999999999 5788899988777788889999999
Q ss_pred CEEEEEeCCccEEEEeCCCCCc-CCCcccCCcceeeeeecCCcEEEEecCCCCcc
Q 006424 474 KHIISIGDDCRVYVWNYDELCF-PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE 527 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~ 527 (645)
++|+++++|..|+||+++.... ..............|+......++.|..-...
T Consensus 559 k~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~ 613 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH 613 (712)
T ss_pred CEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999976532 11222333445556666666667777654443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-46 Score=346.52 Aligned_cols=328 Identities=24% Similarity=0.367 Sum_probs=263.7
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
.....+.||.++|.|++|+|+|++|+||+.|.++|+||+.+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------------------------------------- 146 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------------------------------------- 146 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC---------------------------------------
Confidence 35567899999999999999999999999999999999997
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-e-cCCCcEEEEEEeeC----CCCEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNYF 343 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-~-~~~~~v~~l~~~p~----~~~~l 343 (645)
..+..+.++|...|.|++|+||+ .|++|+.||+|++||..+|+++.. + +|...|++++|.|. ..++|
T Consensus 147 ------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 147 ------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccce
Confidence 67789999999999999999998 899999999999999999887653 3 59999999999872 45689
Q ss_pred EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
++++.||.++|||+..+.++. +.+|..+|+|++|--+| ++++|+.|++|++|+...+.... ...+|...|+
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r-------~lkGHahwvN 292 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR-------ELKGHAHWVN 292 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-------hhcccchhee
Confidence 999999999999999887665 78999999999997655 89999999999999988755421 2233456777
Q ss_pred EEEEc-----------CCC------------------------CcEEEEEECCCeEEEEECCcce-eeEeecCCCCCeEE
Q 006424 423 GIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMS 466 (645)
Q Consensus 423 ~i~~s-----------~~g------------------------~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~i~~ 466 (645)
.++++ |.+ +..+++|+.|.++.+|+..... ..-+...|..-|+.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 77765 222 2369999999999999965332 22233448999999
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~ 546 (645)
+.||||++++|++|-|..|++||..+++....
T Consensus 373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~las------------------------------------------------ 404 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLAS------------------------------------------------ 404 (480)
T ss_pred EEECCCccEEEEeecccceeeeeCCCcchhhh------------------------------------------------
Confidence 99999999999999999999999988742211
Q ss_pred ccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEE
Q 006424 547 ETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVI 624 (645)
Q Consensus 547 ~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~i 624 (645)
+++|-..++.+++|.|.++++|++. |.++++|++.+. ++.+-..+|.+.+ +..+| ||.++
T Consensus 405 -----fRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------Kl~~DLpGh~DEVf~vDwsp-DG~rV 466 (480)
T KOG0271|consen 405 -----FRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------KLKQDLPGHADEVFAVDWSP-DGQRV 466 (480)
T ss_pred -----hhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------eecccCCCCCceEEEEEecC-CCcee
Confidence 1223334455566666777777777 889999999987 3333333444444 44445 89999
Q ss_pred EEecCCCeEeEEE
Q 006424 625 VTAGCDGMIKTFH 637 (645)
Q Consensus 625 vt~s~Dg~Iriw~ 637 (645)
++||.|..+|+|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-42 Score=322.29 Aligned_cols=322 Identities=19% Similarity=0.313 Sum_probs=267.0
Q ss_pred hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424 97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME 176 (645)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (645)
..+.||...|..+.|+|++.. +++.+- |.++|.|
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~-l~tGsG------------D~TvR~W--------------------------------- 142 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSR-LVTGSG------------DTTVRLW--------------------------------- 142 (480)
T ss_pred cccCCCCCcEEEEEecCCCce-EEecCC------------CceEEee---------------------------------
Confidence 367899999999999998877 777776 6666666
Q ss_pred hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe
Q 006424 177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 256 (645)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (645)
....-....+.++|...|.|++|+|||+.||+|+.||+|++||.+++
T Consensus 143 ---------D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg------------------------ 189 (480)
T KOG0271|consen 143 ---------DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG------------------------ 189 (480)
T ss_pred ---------ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC------------------------
Confidence 11111245678999999999999999999999999999999999884
Q ss_pred cccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC-----C-CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCc
Q 006424 257 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-----S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNY 329 (645)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-----~-~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~ 329 (645)
.+....+.||...|++++|.| . ++|++++.||+|+|||+..++++..+ +|+.+
T Consensus 190 --------------------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 190 --------------------QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred --------------------CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 344678899999999999975 2 38999999999999999999998877 59999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEc-----------cCCC---------------
Q 006424 330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK--------------- 382 (645)
Q Consensus 330 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~s-----------p~g~--------------- 382 (645)
|+|+.|- ...++++|+.|++|++|+...+.+.. +.+|...|+.++.+ |.++
T Consensus 250 VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 250 VTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred eEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 9999996 46799999999999999998887655 78899999998776 3333
Q ss_pred ----------EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424 383 ----------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 452 (645)
Q Consensus 383 ----------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~ 452 (645)
.+++|+.|+++.+|+......++... ..|..-|+.+.|+||+ .++++++.|..|++||.++..
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm------tgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM------TGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhh------hchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc
Confidence 49999999999999987666544332 3345789999999998 899999999999999988655
Q ss_pred eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424 453 HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 453 ~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
.......|-..|..++|+.|.++|++||.|.++++|++.+.+.... ...+...+.++.|+|||..+++.+
T Consensus 401 ~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D----------LpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD----------LPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc----------CCCCCceEEEEEecCCCceeecCC
Confidence 4444445899999999999999999999999999999988743221 122466789999999999999877
Q ss_pred CCCc
Q 006424 533 SSSL 536 (645)
Q Consensus 533 ~~~~ 536 (645)
.|..
T Consensus 471 kdkv 474 (480)
T KOG0271|consen 471 KDKV 474 (480)
T ss_pred CceE
Confidence 7644
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-40 Score=313.94 Aligned_cols=242 Identities=21% Similarity=0.326 Sum_probs=220.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
|-+.+|..+.||+|++.|||||.+|.+++|+..+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~ 207 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C 207 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence 6788999999999999999999999999999986 4
Q ss_pred CCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
..+++|.||...|.++.|+|. + .++||+.||++++|++.+..++..+. |...|..++|+| +|++|++++.|.+-+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR 286 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence 567899999999999999996 4 89999999999999999888888874 889999999999 999999999999999
Q ss_pred EEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 354 IWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 354 vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+||++++.. +...+|...|.+++|.|||..+++|+.|..-+|||++++..... +.+ |...|.++.|+|+| +
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~g----H~k~I~~V~fsPNG-y 358 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAG----HIKEILSVAFSPNG-Y 358 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---ecc----cccceeeEeECCCc-e
Confidence 999998764 45789999999999999999999999999999999999987543 233 45899999999998 8
Q ss_pred EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCC
Q 006424 433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|+|.|++++||.-.+.
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 999999999999999997666777788999999999999 7899999999999999987665
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=309.09 Aligned_cols=248 Identities=23% Similarity=0.394 Sum_probs=222.0
Q ss_pred ccccccccccccCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.....++|.||++.|.++.|+|. +.-||||+.||++++|++.+
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------------------------------- 250 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------------------------------- 250 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-----------------------------------
Confidence 33567889999999999999997 56999999999999999986
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~ 344 (645)
..++..+.||...|..++|+|+| +|+|++.|.+-++||++++..+... +|...|.+++|+| +|.+++
T Consensus 251 ----------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~ 319 (459)
T KOG0272|consen 251 ----------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAA 319 (459)
T ss_pred ----------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceee
Confidence 57789999999999999999998 8999999999999999998876655 5999999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
+|+.|..-+|||+++++++. +.+|..+|.++.|+|+|..+|+|+.|++++|||++.... ...+ ..|.+-|+.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~i------pAH~nlVS~ 392 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTI------PAHSNLVSQ 392 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceec------ccccchhhh
Confidence 99999999999999988765 678999999999999999999999999999999997765 2222 234588999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
++|+|..+.+|++++.|++++||........-...+|.+.|.++++++|+.+++|++.|.++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999996669999999999999999876554444455999999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=279.82 Aligned_cols=285 Identities=20% Similarity=0.329 Sum_probs=233.8
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-----------eEecCCCCcccCCCCceE-Eec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGFGSNAKEGKI-KFG 257 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 257 (645)
+...++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+..... -.+.|.+.+.+...-... .+.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 34558899999999999999999999999999999999988765532 234555555443332221 111
Q ss_pred ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEe
Q 006424 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 336 (645)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~ 336 (645)
..... ..+-.....+.+.+|++.+.|+.|-+|+.|+|+|.|.+..+||+++++.+..|. |.+.|.++.++
T Consensus 125 ~ls~~---------d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 125 PLSTR---------DAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ecccc---------cccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 11000 000012345678999999999999999999999999999999999999999994 99999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424 337 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 337 p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
|.+++.+++|+-|+..++||++.+.+++ +.+|...|++++|.|+|.-+++|+.|+++++||++....... +. ..
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~ 270 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HD 270 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cC
Confidence 9889999999999999999999988765 889999999999999999999999999999999998765332 21 11
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
....+|++++|+..| ++|++|..|..+.+||.-.....-....|...|.++..+|||.-++|||.|.+++||.
T Consensus 271 ~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 224789999999998 8999999999999999765555555556999999999999999999999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-36 Score=270.19 Aligned_cols=294 Identities=16% Similarity=0.275 Sum_probs=242.6
Q ss_pred ccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
.+..+|++|++.|+.++..+. ...+++++.|.++.+|++...+..
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------------------------------- 51 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------------------------------- 51 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------------------
Confidence 355679999999999999987 458999999999999999763110
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
-+.+++.+.||+..|..+..++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| +...+++|+
T Consensus 52 ------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGS 124 (315)
T KOG0279|consen 52 ------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGS 124 (315)
T ss_pred ------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCC
Confidence 156788999999999999999997 8999999999999999999888877 5999999999999 999999999
Q ss_pred CCCcEEEEeCCCCcEEEeecc--CCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 348 IDGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~--~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
.|.+|++|++.+....+...+ .+.|+|++|+|+ ..+++.++.|+++++||+++.+.... ..+|.+.++.
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t 197 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNT 197 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEE
Confidence 999999999998887776555 789999999997 67999999999999999998775433 2335688999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 503 (645)
+.++||| .+.++|+.||.+.+||+++....+.. .+...|.+++|+|+.-.|+.+. +..|+|||+++...........
T Consensus 198 ~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc
Confidence 9999998 79999999999999999977664444 4888999999999977666654 5569999999886443332221
Q ss_pred cceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
... ..-..+-..+.++|+++|..|+....++.
T Consensus 275 ~g~-s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 275 IGP-SSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccc-ccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 111 01112345688999999999998777755
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=301.82 Aligned_cols=380 Identities=18% Similarity=0.244 Sum_probs=296.7
Q ss_pred cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
+++++...+++.+|-+.|+++.|+.|.++|++||.|-++++|+++..+
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k-------------------------------- 178 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK-------------------------------- 178 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc--------------------------------
Confidence 678888889999999999999999999999999999999999998631
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-----------------------CeE-
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----------------------NQC- 320 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-----------------------~~~- 320 (645)
+-....+.||.+.|.++-|..+. .+++.+.||.+.+|.... ++.
T Consensus 179 -----------~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 179 -----------NLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred -----------ccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 22356788999999999999876 899999999999997651 110
Q ss_pred --------EEE--e-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEe
Q 006424 321 --------LNV--F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 321 --------~~~--~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~ 388 (645)
... + .....|++.+|++ ..+.|++|-..|...+|++..-.++.... ...+|..+.|+..|.++|.|+
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~ 326 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC 326 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence 000 1 1336899999999 88999999999999999999988777544 447899999999999999987
Q ss_pred cC-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEE
Q 006424 389 IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA 467 (645)
Q Consensus 389 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v 467 (645)
.. |.+-+|+........+ .++|...+++++++||| +++++|+.||.|+|||.....+......|...|+.+
T Consensus 327 ~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred CccceEEEEEeeccceeee-------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence 65 8999999987765433 23356889999999998 899999999999999998866666666699999999
Q ss_pred EEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424 468 SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 547 (645)
Q Consensus 468 ~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 547 (645)
.|+..|+.+++.+-||+|+.||+........-..... -+...++-.|.|..+....-|.. .+.+|+.-.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p---------~QfscvavD~sGelV~AG~~d~F--~IfvWS~qT 467 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP---------IQFSCVAVDPSGELVCAGAQDSF--EIFVWSVQT 467 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc---------eeeeEEEEcCCCCEEEeeccceE--EEEEEEeec
Confidence 9999999999999999999999987642211111111 11223444555555554443322 345665533
Q ss_pred cCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEE
Q 006424 548 TAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIV 625 (645)
Q Consensus 548 ~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iv 625 (645)
+.. .+.+|++++.+++|+|+|..|+|++| |.+|++||+-... . ..+.....+....++|.| ||..|+
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~-~--------~vEtl~i~sdvl~vsfrP-dG~ela 536 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS-G--------TVETLEIRSDVLAVSFRP-DGKELA 536 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC-c--------eeeeEeeccceeEEEEcC-CCCeEE
Confidence 333 67899999999999999999999999 9999999985441 1 122334455555566766 799999
Q ss_pred EecCCCeEeEEEec
Q 006424 626 TAGCDGMIKTFHNY 639 (645)
Q Consensus 626 t~s~Dg~Iriw~~~ 639 (645)
.+..||.|.+|+..
T Consensus 537 VaTldgqItf~d~~ 550 (893)
T KOG0291|consen 537 VATLDGQITFFDIK 550 (893)
T ss_pred EEEecceEEEEEhh
Confidence 99999999999954
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=273.24 Aligned_cols=295 Identities=18% Similarity=0.341 Sum_probs=236.2
Q ss_pred cchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCcc
Q 006424 93 NCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKA 172 (645)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (645)
-.|..+|++|.++|..+++.+.....+.+++. |+.+..|- +
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasr------------Dk~ii~W~----------L----------------- 45 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASR------------DKTIIVWK----------L----------------- 45 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEccc------------ceEEEEEE----------e-----------------
Confidence 34667999999999999999986555667777 66555551 0
Q ss_pred chhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc
Q 006424 173 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 252 (645)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (645)
... +.+.-...+.|+||+..|..+..++||++.++++.||++++||+.+
T Consensus 46 --------~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------------------- 94 (315)
T KOG0279|consen 46 --------TSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------------------- 94 (315)
T ss_pred --------ccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------
Confidence 000 1111125667999999999999999999999999999999999997
Q ss_pred eEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCc
Q 006424 253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNY 329 (645)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~ 329 (645)
++..+.|.||...|.+++|++++ .+++|+.|.+|++|++.........+ +.+.
T Consensus 95 ------------------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 95 ------------------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ------------------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 46678999999999999999987 99999999999999998554444444 3789
Q ss_pred EEEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 330 VTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 330 v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
|.|+.|+|+. .-+|++++.|++|++||+++-++.. +.+|.+.++.+.++|||...++|+.||.+.+||++..+....
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys- 229 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS- 229 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-
Confidence 9999999943 6789999999999999999988765 789999999999999999999999999999999998776322
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEe----ec---CCCCCeEEEEEecCCCEEEE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFK----GL---PKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~----~~---~~~~~i~~v~~sp~~~~l~t 478 (645)
+. +...|.+++|+|+. +.++...+..|+|||+.... ..+. +. ...-...+++|++||..|++
T Consensus 230 --l~-----a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 230 --LE-----AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred --cc-----CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 22 24789999999994 66666666779999976322 2221 11 11223567899999999999
Q ss_pred EeCCccEEEEeCC
Q 006424 479 IGDDCRVYVWNYD 491 (645)
Q Consensus 479 ~s~dg~I~iwd~~ 491 (645)
|-.|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999874
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-35 Score=287.15 Aligned_cols=425 Identities=20% Similarity=0.224 Sum_probs=299.8
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-eeEecCC-CC---cccCCCCceEEe-cccCCCcce
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDD-GG---FGSNAKEGKIKF-GKKKSSHVP 265 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~ 265 (645)
....+.+|...++-..|||.|-|+|+|...|+|||||....... ...+..- +. +.......++.. +.-+.....
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 35567789999999999999999999999999999998763221 1111111 11 111111111111 111111112
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCE
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~ 342 (645)
.+.++ .+..+..+.||...|+++.|-|.. +++||+.|++|.+|+-...+...+++ |..-|+|+.|+| |+.+
T Consensus 131 ~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~ 204 (603)
T KOG0318|consen 131 VFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSR 204 (603)
T ss_pred EEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCe
Confidence 22222 256678899999999999999986 89999999999999977666666665 888999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCcEEE-ee---ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 343 FISGSIDGKVRIWGVCEKRVVD-WA---DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~-~~---~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
+++++.||++.+||-.+++.+. +. .|.+.|.+++|+||++.+++++.|.++++||+.+..+.. .+.+... ..
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~-t~~~~~~---v~ 280 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS-TWPMGST---VE 280 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE-EeecCCc---hh
Confidence 9999999999999999887665 33 689999999999999999999999999999999886543 3333322 12
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
..-..+.|.. ..|++.+.+|.|.+++...+........|...|+++..+|++++|++|+.||.|.-|+..++..-..
T Consensus 281 dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 281 DQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred ceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 3344556763 3799999999999999875554444455999999999999999999999999999999876642110
Q ss_pred ---cccC-----------------------------------------CcceeeeeecCC--------------------
Q 006424 499 ---KQKN-----------------------------------------SVRSCEHFFSEG-------------------- 514 (645)
Q Consensus 499 ---~~~~-----------------------------------------~~~~~~~~~~~g-------------------- 514 (645)
.|.. ....++....++
T Consensus 358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence 0000 000011111111
Q ss_pred -------cEEEEecCCCCccccccCCCCccccCcccc-ccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424 515 -------VSVAVQWPGIGTEQKSLCSSSLRDCSQKWD-NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 586 (645)
Q Consensus 515 -------~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~ 586 (645)
...+++.+|++..++..+.|+-.+.+.+-. .+........|...++.++||||+.++++++. .+++.+||.
T Consensus 438 ~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~ 516 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDV 516 (603)
T ss_pred eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEc
Confidence 112344556666665555544322222111 22333356778889999999999999999998 899999999
Q ss_pred ccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 587 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
.+.+.. ...-.+|......++++| +..+++|||.|.+|.||.+.
T Consensus 517 ~s~~~~--------~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 517 ASREVK--------TNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ccCcee--------cceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence 988310 112234555555567777 68999999999999999874
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-37 Score=308.52 Aligned_cols=415 Identities=17% Similarity=0.203 Sum_probs=308.1
Q ss_pred cccccccc-ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe--cccCCCcceee
Q 006424 191 YTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF--GKKKSSHVPVV 267 (645)
Q Consensus 191 ~~~~~l~~-H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 267 (645)
...+.+++ |+++|.-++|+|.|..|++|+.||.+++||+..+.+........+........+.... .........+
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v- 173 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV- 173 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE-
Confidence 35566677 9999999999999999999999999999999987665444332322211111111100 0011111111
Q ss_pred cCCCceecc--CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--------------------
Q 006424 268 IPDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------------------- 324 (645)
Q Consensus 268 ~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-------------------- 324 (645)
.+|+.. ...+..+..|.+.|++++|++++ .+++++.|..+.+||+.+.+...+.
T Consensus 174 ---~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 174 ---RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ---EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 223332 12467788999999999999887 8999999999999996432211111
Q ss_pred ----------------------------------------------------------------------cCCCcEEEEE
Q 006424 325 ----------------------------------------------------------------------DHHNYVTCVQ 334 (645)
Q Consensus 325 ----------------------------------------------------------------------~~~~~v~~l~ 334 (645)
+.++.|..++
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 1223355555
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424 335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 414 (645)
Q Consensus 335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 414 (645)
|--.+.++++++++.+.+++|+..+..+.-+.+|...|.++....+|.+|++|+.|.++++|.++++..... .....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~---~~a~~ 407 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL---CVAQA 407 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh---hhhhh
Confidence 543366788888888888888888888888899999999999777889999999999999999954443222 22334
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-------ce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------VI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-------~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
.+|.+.|.+++++..+..+++++|.|+++++|++.. .. ..+....|...|++++++|+.+++||||.|.+.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 557789999999998889999999999999999764 11 112335689999999999999999999999999
Q ss_pred EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc--cccCCccCCCCccccCcc
Q 006424 486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSW 563 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~ 563 (645)
+||+++..... ...-.|...+..|.|+|....|++++.| ..+++|.. .+....+.+|.+-+.-..
T Consensus 488 KiW~le~~~l~----------~vLsGH~RGvw~V~Fs~~dq~laT~SgD---~TvKIW~is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 488 KIWDLEQLRLL----------GVLSGHTRGVWCVSFSKNDQLLATCSGD---KTVKIWSISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred eeecccCceEE----------EEeeCCccceEEEEeccccceeEeccCC---ceEEEEEeccceeeeeecCccceeEeee
Confidence 99999854211 1111234456788999999999888877 44667766 566678899999999999
Q ss_pred ccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCC-CcceEEEEecCCCeEeEEE
Q 006424 564 FSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA-TWGLVIVTAGCDGMIKTFH 637 (645)
Q Consensus 564 fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~ivt~s~Dg~Iriw~ 637 (645)
|-.+|+.++|+.. +|-|++|++.++ .+......|.+.+.+++. +++.+++|||.||.|.+|+
T Consensus 555 F~~~~~qliS~~a-dGliKlWnikt~-----------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 555 FIRNGKQLISAGA-DGLIKLWNIKTN-----------ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeCCcEEEeccC-CCcEEEEeccch-----------hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999888 999999999999 566777778887776652 3577999999999999997
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-35 Score=285.99 Aligned_cols=373 Identities=18% Similarity=0.256 Sum_probs=280.1
Q ss_pred cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
+++....+++.|..-|+|+.|+|||.++||++.||+|.+||=.+++
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge---------------------------------- 223 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE---------------------------------- 223 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------------
Confidence 4555667788999999999999999999999999999999988743
Q ss_pred cCCCceeccCCCceeec---cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC----CcEEEEEEeeCC
Q 006424 268 IPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPID 339 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~---~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~----~~v~~l~~~p~~ 339 (645)
.+..+. +|.+.|.+++|+||+ +++|+|.|.+++|||+.+.+++.++... +.-..+-| .
T Consensus 224 -----------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---q 289 (603)
T KOG0318|consen 224 -----------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---Q 289 (603)
T ss_pred -----------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---e
Confidence 344444 899999999999998 9999999999999999999999988532 23334456 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
...|++.+.+|+|.+++....... .+.+|...|+++..+|++++|++|+.||.|.-|+...+..-.. ....|.
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~------~g~~h~ 363 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL------AGKGHT 363 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc------cccccc
Confidence 678999999999999999877654 4789999999999999999999999999999999987654211 112345
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------ce-------------------eeEee------cC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VI-------------------HKFKG------LP 459 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------~~-------------------~~~~~------~~ 459 (645)
..|.+++-+..+ .+++.+.|.++++.++.. +. ..++. ..
T Consensus 364 nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 364 NQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 788888888754 688889999999886420 00 00000 00
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCcccc
Q 006424 460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC 539 (645)
Q Consensus 460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~ 539 (645)
-.-...+++++|++..++.|+.||.|+||.+........ .....+.+.+..++++||+.+|++.... +.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--------~~~~~h~a~iT~vaySpd~~yla~~Da~---rk 510 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--------AKLLEHRAAITDVAYSPDGAYLAAGDAS---RK 510 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------eeeecccCCceEEEECCCCcEEEEeccC---Cc
Confidence 122346789999999999999999999999987642111 1123356788899999999999865543 33
Q ss_pred CccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccC
Q 006424 540 SQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI 616 (645)
Q Consensus 540 ~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (645)
+..|+...... ...-|...+.+++|||+.+++|+++. |-.|.||++..-. .. ......|... +..+
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~-------~~-i~iknAH~~g--Vn~v 579 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPA-------KH-IIIKNAHLGG--VNSV 579 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChh-------hh-eEeccccccC--ceeE
Confidence 44555533332 23346678899999999999999999 9999999987541 11 1222233333 2222
Q ss_pred CCCcceEEEEecCCCeEeEEEe
Q 006424 617 SATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 617 ~~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
.=.|...+||+|.|..||+|++
T Consensus 580 ~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 580 AWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEecCceEEeccCcceeEEecc
Confidence 2235788999999999999986
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=280.61 Aligned_cols=337 Identities=20% Similarity=0.351 Sum_probs=266.3
Q ss_pred ccccccccCCCCcccccChHhHHHHHHHHHHhhccc-chhhccccCCCCCCCCccchhHhhhcccccccccccccccccc
Q 006424 119 SQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRN-VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ 197 (645)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (645)
.....+|+.|+++..++|.+++.-++++....|+.. +++. +-+. +.......-...--+.+..+.|.
T Consensus 154 ~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhn-slds-----------vsll~Dh~c~~~qip~qt~qil~ 221 (519)
T KOG0293|consen 154 DKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHN-SLDS-----------VSLLSDHFCGRLQIPSQTWQILQ 221 (519)
T ss_pred HHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhc-ccch-----------hhhhhhcccCcccCCchhhhhHh
Confidence 445678889999999999999999999999988863 2222 1000 11111111111223445778899
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|++.|+-+.||++|+||||++.|.+..+|.+.... .-
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------------~~ 259 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------------------------HF 259 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------------------------ce
Confidence 999999999999999999999999999999986521 12
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
+..+++.||..+|..+.||||. +|++|+.|..+.+||+.+|.....+.+. ..+.+++|.| |+..+++|+.|+++..
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIM 338 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEE
Confidence 4467889999999999999986 9999999999999999999999888754 7899999999 9999999999999999
Q ss_pred EeCCCCcEEEeeccC-CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 355 WGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 355 wd~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
||+.+.....+.+.+ ..|.+++.++||+++++.+.|..|++|+..+..... . ... ..+|++++.|.+| .+
T Consensus 339 wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-l--ise-----~~~its~~iS~d~-k~ 409 (519)
T KOG0293|consen 339 WDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-L--ISE-----EQPITSFSISKDG-KL 409 (519)
T ss_pred ecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-c--ccc-----cCceeEEEEcCCC-cE
Confidence 999988877766654 459999999999999999999999999987654321 1 111 3789999999998 89
Q ss_pred EEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee
Q 006424 434 IMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 510 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 510 (645)
+++.-.+..+++||+.+ ....+.++.....+..-+|.- +..++++||+|+.|+||+..+++..... -
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----------s 479 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----------S 479 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----------c
Confidence 99999999999999884 445666766666788888865 4589999999999999999888432211 1
Q ss_pred ecCCcEEEEecCCCCcccc
Q 006424 511 FSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 511 ~~~g~~~~v~~s~~~~~l~ 529 (645)
.|...+..|+|+|....+.
T Consensus 480 GHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred CCcceeeEEecCCCCHHHh
Confidence 2345577888888766544
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-36 Score=278.55 Aligned_cols=301 Identities=19% Similarity=0.335 Sum_probs=250.0
Q ss_pred ChHhHHHHHHHHHHhhccc--chhhccccCCCCCCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCC
Q 006424 136 NIKKVKKLWKRIISMKKRN--VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 213 (645)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~ 213 (645)
+...+.+.|....+.++.- ++...++...+....... ........+.+++.+.+.+.+|..+|+.+-|+|+-.
T Consensus 47 ~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~pt-----~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~ 121 (406)
T KOG0295|consen 47 DGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDPT-----GSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA 121 (406)
T ss_pred ccceeeccccccchhHHHHHHHHhhhcccccccccCCCC-----cCccChhhcCCCCCchhhhhccccceeeeeeccCce
Confidence 4567778888887777763 344444444333222111 112223347788889999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEE
Q 006424 214 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL 293 (645)
Q Consensus 214 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 293 (645)
.+++++.|++|++||..+ ++....++||...|.++
T Consensus 122 ~v~~as~d~tikv~D~~t---------------------------------------------g~~e~~LrGHt~sv~di 156 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTET---------------------------------------------GELERSLRGHTDSVFDI 156 (406)
T ss_pred EEEEecCCceEEEEEccc---------------------------------------------hhhhhhhhccccceeEE
Confidence 999999999999999998 45578899999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccC
Q 006424 294 AWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVR 369 (645)
Q Consensus 294 ~~s~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~ 369 (645)
+|+..| ++++++.|-.+++||..+ .++++.. +|...|.+++|-| .++++++++.|.+|+.|++.++.++. +.+|.
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCch
Confidence 999888 899999999999999976 3444443 6888999999999 88999999999999999999988765 78899
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC--------------CCcEEE
Q 006424 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------------ESQRIM 435 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~--------------g~~~l~ 435 (645)
..|..+..+.||..+++++.|.++++|-+.+...... .+.|..+|-|++|.|. +.+++.
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-------hhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 9999999999999999999999999999988754322 2234578888888763 226999
Q ss_pred EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 436 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+++.|++|++||+..+...+....|...|.+++|+|.|+||+++.+|+++++||+++.+
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 99999999999999888888888899999999999999999999999999999999874
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-36 Score=289.88 Aligned_cols=277 Identities=23% Similarity=0.449 Sum_probs=238.3
Q ss_pred ccccccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
+..+..++.||+..|+++.|.| .+.+|++|+.|+.|+||++..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------------------------------------ 246 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------------------------------------ 246 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec------------------------------------
Confidence 3446778999999999999999 899999999999999999976
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
++..++++.||..+|.+++|+++| .++|+|.|+.|++||+++|+++..+.....++|+.|+|.+.+.+++|
T Consensus 247 --------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 247 --------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred --------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 367899999999999999999998 89999999999999999999999999999999999999555999999
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.|+.|+.||++++++++ +..|-+.|..+.|-++|+++++.+.|+++++|+.+..-......... .....++.
T Consensus 319 ~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP~~~ 392 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMPCLT 392 (503)
T ss_pred cCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCccee
Confidence 999999999999999776 66788899999999999999999999999999998665432222222 24677899
Q ss_pred EcCCCCcEEEEEECCCeEEEEECC-----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 426 FSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
.+|++ .++++-+.|+.|.++.+. +....+.++...+.-..+.|||||.+|++|+.||.+.+||.++.+.....
T Consensus 393 ~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l- 470 (503)
T KOG0282|consen 393 LHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL- 470 (503)
T ss_pred cCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-
Confidence 99998 799999999999999865 34566777777788899999999999999999999999999876432221
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGT 526 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~ 526 (645)
-.+++.++.+.|+|...
T Consensus 471 ---------kah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 471 ---------KAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ---------ccCCcceEEEEecCCCc
Confidence 12367788899988743
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=252.67 Aligned_cols=273 Identities=19% Similarity=0.352 Sum_probs=230.0
Q ss_pred CCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC
Q 006424 169 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 248 (645)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 248 (645)
...+..++.|+.... ...++++...+.|+.+...||++.||+|+.- .||+||+.+..
T Consensus 16 A~YDhTIRfWqa~tG-------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~n--------------- 72 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTG-------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNN--------------- 72 (311)
T ss_pred ccCcceeeeeehhcC-------eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCC---------------
Confidence 344455555544332 2567787778899999999999999998865 59999998742
Q ss_pred CCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC
Q 006424 249 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH 327 (645)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 327 (645)
..++.++.+|...|+++.|..+| .+++||.||+++|||++...+.+.+.|.
T Consensus 73 ----------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 73 ----------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred ----------------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 35789999999999999999888 8999999999999999999999999999
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
.+|+++..+| +...|++|..+|.|++||+....+.. .......|.++...|||.+++.+...|++++|++-+.....
T Consensus 125 spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 125 SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 9999999999 88899999999999999999875543 44556789999999999999999999999999998754433
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
.... ....+.|...+..+.+||++ ++|++++.|.+++||+.... ........|...+..++||.||+||+||+.|+.
T Consensus 204 ~l~P-~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 204 ELEP-VHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred cceE-hhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 3222 22355667889999999998 89999999999999998865 334445568889999999999999999999999
Q ss_pred EEEEeCCCCCc
Q 006424 485 VYVWNYDELCF 495 (645)
Q Consensus 485 I~iwd~~~~~~ 495 (645)
+++|++..++.
T Consensus 282 ~rlW~~~~~k~ 292 (311)
T KOG0315|consen 282 ARLWDLSAGKE 292 (311)
T ss_pred eeecccccCce
Confidence 99999998863
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.6e-34 Score=273.81 Aligned_cols=271 Identities=21% Similarity=0.344 Sum_probs=232.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|++++|+.+|..||+|+.||.++||+.. +..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~----------------------------------------------G~l~ 269 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD----------------------------------------------GNLI 269 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC----------------------------------------------chhh
Confidence 469999999999999999999999999986 4567
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
.++..|+++|.++.|+..| +|++++.|+++.+||..++...+.+. |..+-..+.|- +...|++++.|+.|+|+.+.
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~ 347 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG 347 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec
Confidence 7888999999999999887 99999999999999999999999997 55555778997 57789999999999999997
Q ss_pred CCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC------
Q 006424 359 EKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES------ 431 (645)
Q Consensus 359 ~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~------ 431 (645)
.... .++.+|.+.|.++.|+|.|.+|++++.|+++++|.+....... ....|...|..+.|+|.|+
T Consensus 348 ~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 348 EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNPN 420 (524)
T ss_pred CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCCc
Confidence 7554 5688899999999999999999999999999999987655421 2233457899999998753
Q ss_pred --cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424 432 --QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 509 (645)
Q Consensus 432 --~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 509 (645)
..+++++.|++|++||+...........|..+|.+++|+|+|+|+|+|+.||.|.+|+.+.++... .
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~-----------s 489 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK-----------S 489 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE-----------e
Confidence 579999999999999999887777777799999999999999999999999999999999874322 2
Q ss_pred eecCCcEEEEecCCCCccccccCCCCcc
Q 006424 510 FFSEGVSVAVQWPGIGTEQKSLCSSSLR 537 (645)
Q Consensus 510 ~~~~g~~~~v~~s~~~~~l~~~~~~~~~ 537 (645)
...++.+..++|+.+|..|..+.+++..
T Consensus 490 ~~~~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 490 YQGTGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred ecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence 3345668899999999888877776553
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-33 Score=251.28 Aligned_cols=272 Identities=19% Similarity=0.324 Sum_probs=224.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424 213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 292 (645)
Q Consensus 213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 292 (645)
-+|+|+|.|.+||+|...+ +...++++...+.|+.
T Consensus 11 viLvsA~YDhTIRfWqa~t---------------------------------------------G~C~rTiqh~dsqVNr 45 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT---------------------------------------------GICSRTIQHPDSQVNR 45 (311)
T ss_pred eEEEeccCcceeeeeehhc---------------------------------------------CeEEEEEecCccceee
Confidence 4899999999999999988 4556777767789999
Q ss_pred EEEcCCCeEEEEeCCCcEEEEecCCCe--EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC
Q 006424 293 LAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 369 (645)
Q Consensus 293 l~~s~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 369 (645)
+...|++..++++....|++||++++. ++.+|. |.+.|+++.|.. +++.+++|++||+++|||++...+.+...+.
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 999999854444455789999998765 467775 889999999999 9999999999999999999998888888999
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
.+|+++..+|+...|++|..+|.|++||+.........+. .....|.++...||| .+++++...|..++|++-
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP------e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP------EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC------CCCcceeeEEEcCCC-cEEEEecCCccEEEEEcc
Confidence 9999999999999999999999999999998765333222 224789999999998 799999999999999954
Q ss_pred c------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424 450 D------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 523 (645)
Q Consensus 450 ~------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~ 523 (645)
. .....+...|.+.+..+.+|||+++||++|.|.+++||+.++- ....
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle------------------------- 251 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLE------------------------- 251 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeE-------------------------
Confidence 2 2222234558999999999999999999999999999998754 0000
Q ss_pred CCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCC
Q 006424 524 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDS 590 (645)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~ 590 (645)
....++++++-..+||.||++|++++. |...++|++..++
T Consensus 252 --------------------------~~l~gh~rWvWdc~FS~dg~YlvTass-d~~~rlW~~~~~k 291 (311)
T KOG0315|consen 252 --------------------------LVLTGHQRWVWDCAFSADGEYLVTASS-DHTARLWDLSAGK 291 (311)
T ss_pred --------------------------EEeecCCceEEeeeeccCccEEEecCC-CCceeecccccCc
Confidence 002334556667789999999999987 8999999999883
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=255.92 Aligned_cols=281 Identities=25% Similarity=0.398 Sum_probs=237.8
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
...+.+|++.|+.+.|+|+|.+||||+.|..|.+|++..
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----------------------------------------- 78 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG----------------------------------------- 78 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-----------------------------------------
Confidence 345789999999999999999999999999999999765
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
+.+....+++|++.|..+.|.+++ .+++++.|.+|+.||+++|+++..+. |.+-|+.+.-+.....++.+++.|+
T Consensus 79 ---dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 79 ---DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG 155 (338)
T ss_pred ---cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCc
Confidence 244566778999999999999987 99999999999999999999999886 8888888885554556788999999
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
++++||++++........+..++++.|...+..+.+|+-|+.|++||++.+..... .. +|..+|+.+..+|+|
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~---ls----Gh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT---LS----GHADTITGLSLSRYG 228 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE---ee----cccCceeeEEeccCC
Confidence 99999999999998888899999999999999999999999999999987765432 22 346899999999998
Q ss_pred CcEEEEEECCCeEEEEECC------cceeeEeecCCCC--CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424 431 SQRIMITSEDSKLRILDGV------DVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 502 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~~--~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 502 (645)
.++++-+.|.++++||.+ .++..+.++.|.- ....++|+|++..+.+|+.|..+++||.......
T Consensus 229 -s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l------ 301 (338)
T KOG0265|consen 229 -SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL------ 301 (338)
T ss_pred -CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE------
Confidence 899999999999999976 3466677755543 4567799999999999999999999998764211
Q ss_pred CcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424 503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 535 (645)
Q Consensus 503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~ 535 (645)
.....+.|.+..+.|+|....|.++++|.
T Consensus 302 ----yklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 302 ----YKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ----EEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 11233567788888898888888777764
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=254.45 Aligned_cols=287 Identities=16% Similarity=0.243 Sum_probs=243.2
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
+..++++||.+.|.++.|+++. +++++|.||.+.|||.-+...++.+. ...+|..++|+| .++++|+|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 3458899999999999999987 89999999999999998888777776 567999999999 99999999999999999
Q ss_pred eCCCC--c-----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 356 GVCEK--R-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 356 d~~~~--~-----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
++.+. + ...+.+|.+.+.++.|-+ ...|++++.|.++.+||+++...... +++ |.+.|.++.++|
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~---f~G----H~gDV~slsl~p 196 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV---FHG----HTGDVMSLSLSP 196 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE---ecC----CcccEEEEecCC
Confidence 99754 1 234789999999999987 55789999999999999998876433 444 468999999999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 508 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 508 (645)
...+.+++|+-|+..++||++..........|...|+++.|.|+|.-+++|++|++.++||++..+......
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-------- 268 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-------- 268 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--------
Confidence 435999999999999999999665555555599999999999999999999999999999999764222111
Q ss_pred eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424 509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
.-.....++.++|+..|.+|+....| ....+|+.+.+.. .+.+|+..+.++..+|||..+++++| |..++||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-Ds~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-DSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecC---CceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-hHheeecC
Confidence 11123457899999999999977665 5567899987776 77899999999999999999999999 99999994
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.8e-33 Score=259.51 Aligned_cols=327 Identities=15% Similarity=0.223 Sum_probs=261.0
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
-..+|..|+++|.+++.+|+.++++||+.|..-.+|++.+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~---------------------------------------- 95 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST---------------------------------------- 95 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------------------
Confidence 3567889999999999999999999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
+.....+.+|+..|+++.|+.++ +|+||+.+|.|+||+..++.....+. .-..+.-+.|+| ...+|+.|+.|
T Consensus 96 -----ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~D 169 (399)
T KOG0296|consen 96 -----GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTD 169 (399)
T ss_pred -----CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCC
Confidence 34567888999999999999998 99999999999999999998877775 556788899999 99999999999
Q ss_pred CcEEEEeCCC-CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 350 GKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 350 g~i~vwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
|.+-+|.+.+ +.+..+.+|..++++=.|.|+|+.++++..||+|++|+..+.......-... +....++.++.
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------~~~~~~~~~~~ 243 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE------GLELPCISLNL 243 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc------cCcCCcccccc
Confidence 9999999988 5566688999999999999999999999999999999999886543321111 35677888888
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEeec--------CCCC---CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFKGL--------PKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
.+ ..++.|+.++.+++.+........... .+.. .|-.+.++..-.+.|+|+-||+|.|||+......
T Consensus 244 ~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R- 321 (399)
T KOG0296|consen 244 AG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR- 321 (399)
T ss_pred cc-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-
Confidence 86 788899999988888754332222211 1223 3445556666788999999999999999865211
Q ss_pred CcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCC
Q 006424 498 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWP 577 (645)
Q Consensus 498 ~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~ 577 (645)
. .+.+...++.+.|-+ ..+|++.+.
T Consensus 322 ---------~-~c~he~~V~~l~w~~-t~~l~t~c~-------------------------------------------- 346 (399)
T KOG0296|consen 322 ---------H-ICEHEDGVTKLKWLN-TDYLLTACA-------------------------------------------- 346 (399)
T ss_pred ---------e-eccCCCceEEEEEcC-cchheeecc--------------------------------------------
Confidence 1 122333466777776 555443333
Q ss_pred CCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCC-CCcceEEEEecCCCeEeEEEe
Q 006424 578 AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 578 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
+|+|+.||..+| .+...+.+|..++..|. .++++++||+|.|++.+||+.
T Consensus 347 ~g~v~~wDaRtG-----------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 347 NGKVRQWDARTG-----------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CceEEeeecccc-----------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 788999999999 56667777777777665 348999999999999999985
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-33 Score=257.01 Aligned_cols=303 Identities=17% Similarity=0.278 Sum_probs=248.0
Q ss_pred cccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424 184 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 263 (645)
Q Consensus 184 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (645)
..|-.+..+.+.+++|.+.|.|+++.|...+++||+.|++|+|||+.+
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-------------------------------- 182 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-------------------------------- 182 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--------------------------------
Confidence 335566677889999999999999999999999999999999999998
Q ss_pred ceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424 264 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
++...++.||-..|..+++++.. ++++++.|+.|+.||++.++.++.+ +|-+.|.|++.+| .-+
T Consensus 183 -------------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tld 248 (460)
T KOG0285|consen 183 -------------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLD 248 (460)
T ss_pred -------------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cce
Confidence 56677899999999999999876 9999999999999999999998877 6999999999999 889
Q ss_pred EEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 342 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
.|++|+.|.++++||+++...+ .+.+|..+|.++.+.|-...+++|+.|++|++||++.++...... . |...
T Consensus 249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~------hkks 321 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-H------HKKS 321 (460)
T ss_pred eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-c------ccce
Confidence 9999999999999999997655 477899999999999988899999999999999999887643321 1 2478
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
+.+++.+|.. ..+++++.| .|+-|++...........|...|++++...|+ ++++|+++|.|.+||.+++......+
T Consensus 322 vral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 322 VRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred eeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence 9999999996 667776665 68999987544433344588889999987664 88899999999999999885333221
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 547 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 547 (645)
.. ..--....+..+++.+|...|..|.+...| ..+.+|...+
T Consensus 399 t~--vqpGSl~sEagI~as~fDktg~rlit~ead---KtIk~~keDe 440 (460)
T KOG0285|consen 399 TI--VQPGSLESEAGIFASCFDKTGSRLITGEAD---KTIKMYKEDE 440 (460)
T ss_pred cc--ccCCccccccceeEEeecccCceEEeccCC---cceEEEeccc
Confidence 11 111123345567899999999999987776 4456666644
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=271.51 Aligned_cols=401 Identities=17% Similarity=0.226 Sum_probs=291.9
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----------ceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+...|++++.||+|.+|++....|...+-++... ...+..++|++.+.+.+....+.++......... +
T Consensus 54 ~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~-~ 132 (893)
T KOG0291|consen 54 TRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNE-F 132 (893)
T ss_pred cCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcc-c
Confidence 5556777777777777777777776666554432 2344555666555544444444333332221110 0
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~ 344 (645)
. .....+++.||-..|.++.|+.|. +|++||.|.++++|+++..+....+ +|.+.|.++-|.. +...++
T Consensus 133 ~------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~ 205 (893)
T KOG0291|consen 133 N------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLY 205 (893)
T ss_pred C------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEE
Confidence 0 123356778999999999999886 8999999999999999876653333 5999999999988 888899
Q ss_pred EEeCCCcEEEEeCCC------------------------Cc----EE-------EeeccCCCeEEEEEccCCCEEEEEec
Q 006424 345 SGSIDGKVRIWGVCE------------------------KR----VV-------DWADVRDVISAICYIPDGKGFIVGSI 389 (645)
Q Consensus 345 s~s~dg~i~vwd~~~------------------------~~----~~-------~~~~~~~~v~~l~~sp~g~~l~~g~~ 389 (645)
+.+.||.+.+|.... .+ .. .+......+++.+|++..+.|++|-.
T Consensus 206 tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs 285 (893)
T KOG0291|consen 206 TVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS 285 (893)
T ss_pred EEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec
Confidence 999999999997651 11 00 11223367999999999999999999
Q ss_pred CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeecCCCCCeEEEE
Q 006424 390 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPKSGSQMSAS 468 (645)
Q Consensus 390 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~~~~i~~v~ 468 (645)
.|...+|.+...... ....... .+|..++|+..| .+++.|+.. |.+-||+.....-.++...|...+++++
T Consensus 286 sG~f~LyelP~f~li-h~LSis~------~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLI-HSLSISD------QKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred CCeeEEEecCCceEE-EEeeccc------ceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 999999999877653 2333332 689999999988 788888765 8999999887777777777999999999
Q ss_pred EecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424 469 FTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 547 (645)
Q Consensus 469 ~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 547 (645)
++|||+++|||++||.|+|||..++ .....|. |...+.++.|+..+..+.+++-|+. ++.|+-..
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~Sg-----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGt---VRAwDlkR 423 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSG-----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT---VRAWDLKR 423 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCc-----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCe---EEeeeecc
Confidence 9999999999999999999999887 2233444 6677889999999999987776644 45565522
Q ss_pred cC--CccCC-CCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCc--cCCCCcce
Q 006424 548 TA--PWIRD-SERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGL 622 (645)
Q Consensus 548 ~~--~~~~~-~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~ 622 (645)
.. +.+.. .+....+++..|.|..+..++...=.|++|++++| ++.....+|.+.+. .|++ +|.
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----------qllDiLsGHEgPVs~l~f~~-~~~ 491 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----------QLLDILSGHEGPVSGLSFSP-DGS 491 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----------eeeehhcCCCCcceeeEEcc-ccC
Confidence 11 11122 23345667778889988888774458999999999 34444555555554 4666 699
Q ss_pred EEEEecCCCeEeEEEecCc
Q 006424 623 VIVTAGCDGMIKTFHNYGL 641 (645)
Q Consensus 623 ~ivt~s~Dg~Iriw~~~g~ 641 (645)
.|+|||+|.|||+|++|+-
T Consensus 492 ~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eEEeccccceEEEEEeecc
Confidence 9999999999999999864
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=282.93 Aligned_cols=378 Identities=15% Similarity=0.238 Sum_probs=288.9
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-.+.|++++.+||+++|++++..+.+++|++.+ ++
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t---------------------------------------------gk 95 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPT---------------------------------------------GK 95 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEccc---------------------------------------------ch
Confidence 455799999999999999999999999999997 45
Q ss_pred Cceeecc-CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCC--EEEEEeCCCcEE
Q 006424 279 PLQELHG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN--YFISGSIDGKVR 353 (645)
Q Consensus 279 ~~~~l~~-h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~--~l~s~s~dg~i~ 353 (645)
.++.++. |++||.-++|+|.+ .+++|+.|+.|+|||+..+.+...|. |++.|.++.|+| +.+ .|++|..|++++
T Consensus 96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~-~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHP-HWNRWLLASGATDGTVR 174 (775)
T ss_pred HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCC-ccchhheeecCCCceEE
Confidence 6777777 99999999999987 89999999999999999999999995 899999999999 544 489999999999
Q ss_pred EEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-------------------------
Q 006424 354 IWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE------------------------- 406 (645)
Q Consensus 354 vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~------------------------- 406 (645)
+||++.+.. .....|.+.|+++.|++|+..+++++.|..+.+||+...+....
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 999986554 34678999999999999999999999999999998742110000
Q ss_pred ---------EEe-----------------------------------------e-----------------------cc-
Q 006424 407 ---------KVD-----------------------------------------F-----------------------HD- 412 (645)
Q Consensus 407 ---------~~~-----------------------------------------~-----------------------~~- 412 (645)
.+. + -+
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 000 0 00
Q ss_pred -------------------------ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCC
Q 006424 413 -------------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGS 463 (645)
Q Consensus 413 -------------------------~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~ 463 (645)
...+|...|.++....+| .+|++++.|.++++|.+.+ ....-....|...
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 001144555566644454 6999999999999997632 2222233558889
Q ss_pred eEEEEEecCC-CEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcc
Q 006424 464 QMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK 542 (645)
Q Consensus 464 i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~ 542 (645)
|.+++++..+ .+++++|.|+++++|++...+.... ..........-.|+..+++|+.+|+...+++.+.| ...++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD---ktaKi 489 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD---KTAKI 489 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccc---cceee
Confidence 9999997654 5899999999999999987321111 11111111233467788999999999999988777 44567
Q ss_pred ccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccC-CCC
Q 006424 543 WDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI-SAT 619 (645)
Q Consensus 543 w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 619 (645)
|+..+... .+.+|.+-+-++.|++..+.++++|. |.+|+||.+++.+ +...+.+|.+-+... +-.
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg-D~TvKIW~is~fS-----------ClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG-DKTVKIWSISTFS-----------CLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccC-CceEEEEEeccce-----------eeeeecCccceeEeeeeee
Confidence 77653332 78899999999999999999999998 9999999999882 344455555555322 233
Q ss_pred cceEEEEecCCCeEeEEEec
Q 006424 620 WGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 620 d~~~ivt~s~Dg~Iriw~~~ 639 (645)
+|..|+||+.||.|++|++.
T Consensus 558 ~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CCcEEEeccCCCcEEEEecc
Confidence 68899999999999999953
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-32 Score=280.79 Aligned_cols=275 Identities=25% Similarity=0.361 Sum_probs=218.6
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+..-...++|..|++|++.||.|-.|..|++|.+.........-....... ...... ...+...+.
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-----------d~~sad---~~~~~~D~~ 439 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-----------DTESAD---VDVDMLDDD 439 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccc-----------cccccc---hhhhhcccc
Confidence 333445699999999999999999999999999885211000000000000 000000 000011111
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
.......+.||.++|..+.|+|+. +|++||.|++|++|.+.+..++-.+ +|..+|+++.|+| .|.+||+++.|++.+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTAR 518 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceee
Confidence 234456689999999999999997 9999999999999999999988877 4999999999999 899999999999999
Q ss_pred EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+|........+ +.+|-..|.|+.|+|++.|+++|+.|.++++||..++.... . +. +|..+|++++|+|+| .
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR-i--F~----GH~~~V~al~~Sp~G-r 590 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR-I--FT----GHKGPVTALAFSPCG-R 590 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE-E--ec----CCCCceEEEEEcCCC-c
Confidence 99988766555 67899999999999999999999999999999999887632 2 22 356999999999998 8
Q ss_pred EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+|++|+.||.|.+||+...........|.+.|.++.||.+|..||+||.|.+|++||+...
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999998865544444557999999999999999999999999999998765
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.1e-32 Score=259.44 Aligned_cols=330 Identities=17% Similarity=0.268 Sum_probs=250.0
Q ss_pred cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+.+. |+.+|.+++|+|-.. .|++|+.|-+.++|++.........
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---------------------------------- 217 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---------------------------------- 217 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------------------------------
Confidence 3344 999999999999766 9999999999999998741000000
Q ss_pred eeccCCCceeecc----CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 273 FQIEESPLQELHG----HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 273 ~~~~~~~~~~l~~----h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
+..-+....+.+ -...|++++|+.+| .|++|+.||.+++|+.. |..+.++ .|.++|.++.|+. .+++|+++
T Consensus 218 -q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk-~G~yilS~ 294 (524)
T KOG0273|consen 218 -QLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNK-KGTYILSG 294 (524)
T ss_pred -hhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcC-CCCEEEec
Confidence 000000000111 24679999999988 99999999999999987 5555555 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.|+++.+||..++....... |..+-..+.|-. ...+++.+.||.|+++.+........... |.+.|.++.
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-------H~g~V~alk 366 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-------HHGEVNALK 366 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-------ccCceEEEE
Confidence 999999999999988877444 444446788854 45789999999999999987665433222 358999999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC---------CEEEEEeCCccEEEEeCCCCCcC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG---------KHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~---------~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
|+|.| .+|++++.|++++||+..+....-..+.|...|..+.|+|+| ..+++++.|++|++||+..+..
T Consensus 367 ~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~- 444 (524)
T KOG0273|consen 367 WNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP- 444 (524)
T ss_pred ECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-
Confidence 99998 899999999999999977555544555689999999999975 4699999999999999987711
Q ss_pred CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCC
Q 006424 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW 576 (645)
Q Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~ 576 (645)
+.. +..|...|++++|||+|+++++++.
T Consensus 445 --------------------i~~--------------------------------f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 445 --------------------IHT--------------------------------LMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred --------------------eEe--------------------------------eccCCCceEEEEecCCCcEEEecCC
Confidence 000 1235566778888999999999998
Q ss_pred CCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCc---cCCCCcceEEEEecCCCeEeEEEe
Q 006424 577 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 577 ~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
|+.+.+|+++++ + ..+...+... -....+|..|..+-.||.+++-++
T Consensus 473 -dg~V~iws~~~~-----------~---l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 -DGCVHIWSTKTG-----------K---LVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -CCeeEeccccch-----------h---eeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999998 2 2333333322 122446788888888999998775
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-32 Score=279.06 Aligned_cols=208 Identities=30% Similarity=0.539 Sum_probs=188.9
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.....++|.||+++|..+.|+|+.++|+++|.|+++|+|.+.+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t------------------------------------- 482 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT------------------------------------- 482 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence 3445667999999999999999999999999999999999987
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...+..++||..+|+++.|+|.| +++|||.|++.++|.....++++.+ +|-+.|.|+.|+| +.+++++|
T Consensus 483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG 553 (707)
T KOG0263|consen 483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG 553 (707)
T ss_pred --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence 44567888999999999999999 8999999999999999999999888 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
|.|.+|++||+.++..++ +.+|.++|.+++|+|+|++|++|+.||.|.+||+.++..... ...|.+.|.++.
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS 626 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence 999999999999988776 789999999999999999999999999999999998775433 222358999999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCc
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
|+.+| ..|++|+.|.+|++||+..
T Consensus 627 FS~dg-~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 627 FSRDG-NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCC-CEEEecCCCCeEEEEEchh
Confidence 99998 8999999999999999764
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=235.37 Aligned_cols=273 Identities=25% Similarity=0.461 Sum_probs=229.2
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.+.|..|+++|..+.|+-||+|.++++.|++|++|+...
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------------------- 48 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------------------- 48 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence 456889999999999999999999999999999999876
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
+..++++.||..+|..++.+.|+ .+++|+.|..|.+||+.+|+.++.++ |...|+.++|+. +...+++|+.|.
T Consensus 49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~ 123 (307)
T KOG0316|consen 49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS 123 (307)
T ss_pred ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence 56789999999999999998877 99999999999999999999999996 999999999998 889999999999
Q ss_pred cEEEEeCCCCc--EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 351 KVRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 351 ~i~vwd~~~~~--~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
++++||-++.. +++ +....+.|.++..+ +..+++|+.||+++.||++.+..... .. +.+|+|++|+
T Consensus 124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD---y~------g~pit~vs~s 192 (307)
T KOG0316|consen 124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD---YF------GHPITSVSFS 192 (307)
T ss_pred eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh---hc------CCcceeEEec
Confidence 99999998754 333 45667788888875 56799999999999999998876432 22 3789999999
Q ss_pred CCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 428 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
+++ +..++++.|+++++.|-. +....++++.+...-...++.....++++||+||.|++||+.+........
T Consensus 193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~----- 266 (307)
T KOG0316|consen 193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS----- 266 (307)
T ss_pred CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-----
Confidence 998 899999999999999955 567778887777777888899889999999999999999998774322211
Q ss_pred eeeeeecCCc-EEEEecCCCCccccccCC
Q 006424 506 SCEHFFSEGV-SVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 506 ~~~~~~~~g~-~~~v~~s~~~~~l~~~~~ 533 (645)
.+... +..+++.|.-..+.....
T Consensus 267 -----~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 267 -----VVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred -----cCCceeEEeeecccCccceeEecC
Confidence 12222 566777777666664444
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=259.97 Aligned_cols=296 Identities=17% Similarity=0.271 Sum_probs=239.8
Q ss_pred cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
.+...+.......-+..|..+.|.|+|+.|++|+..|.+.+|+..+
T Consensus 82 ~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---------------------------------- 127 (464)
T KOG0284|consen 82 AFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---------------------------------- 127 (464)
T ss_pred ccccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCce----------------------------------
Confidence 3333333333444566899999999999999999999999998754
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l 343 (645)
......++.|..+|+++.|++++ +++||+.+|.|++|+..-........ |...|++++|+| +...|
T Consensus 128 -----------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF 195 (464)
T KOG0284|consen 128 -----------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKF 195 (464)
T ss_pred -----------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCcee
Confidence 11224566899999999999988 99999999999999987544444444 448999999999 88899
Q ss_pred EEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 344 ISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
++++.||+|+|||....+. ..+.+|.-.|.+++|+|...++++|+.|..|++||.+++..... ++. |...|.
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~----HKntVl 268 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHG----HKNTVL 268 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhh----ccceEE
Confidence 9999999999999876544 34688999999999999999999999999999999998876433 233 357899
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQK 501 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 501 (645)
.+.|+|++ ++|++++.|..++++|++.....+....|...++++.|+|- ..+|.+|+.||.|..|.+...+
T Consensus 269 ~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~------- 340 (464)
T KOG0284|consen 269 AVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE------- 340 (464)
T ss_pred EEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-------
Confidence 99999998 99999999999999999966555666669999999999995 5678889999999999987331
Q ss_pred CCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424 502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 547 (645)
Q Consensus 502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 547 (645)
....+.+.+++.+..++|+|-|..|++.+.| +.+++|....
T Consensus 341 --p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd---~t~rfw~r~r 381 (464)
T KOG0284|consen 341 --PLGEIPPAHDGEIWSLAYHPLGHILATGSND---RTVRFWTRNR 381 (464)
T ss_pred --cccCCCcccccceeeeeccccceeEeecCCC---cceeeeccCC
Confidence 1122245578889999999999999986665 5567787643
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=263.22 Aligned_cols=246 Identities=19% Similarity=0.355 Sum_probs=210.0
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+++|..+|+++.|+++|.+++||+.+|.|++|+..-
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------ 169 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------ 169 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence 34678999999999999999999999999999998753
Q ss_pred eccCCCceeeccCc-cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
..++.+.+|. ..|++++|+|+. .+++||.||+|+|||....+....+ +|.-.|.+++|+| ...++++|+.|.
T Consensus 170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn 244 (464)
T KOG0284|consen 170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN 244 (464)
T ss_pred ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence 3345555555 999999999865 9999999999999999877776666 5888999999999 888999999999
Q ss_pred cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.|++||.+++.++. +..|+..|..+.|+|++++|++++.|..+++||+++.+... ..+.|...++++.|+|-
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLTWHPL 317 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeeccccc
Confidence 99999999988765 78899999999999999999999999999999999543221 12334578999999998
Q ss_pred CCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...+|.+|+.||.|..|.+. +.-.......|...|.+++|+|-|..|++|+.|.++++|.-...
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 77899999999999999976 21122223558999999999999999999999999999986543
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-31 Score=266.83 Aligned_cols=427 Identities=16% Similarity=0.188 Sum_probs=287.1
Q ss_pred CCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcc
Q 006424 167 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 246 (645)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 246 (645)
+-...+..++++..... ...-++.||+.+|+++.|...|..|||||.|+.|.+||+-................
T Consensus 81 AVGYaDGsVqif~~~s~-------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT 153 (888)
T KOG0306|consen 81 AVGYADGSVQIFSLESE-------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSIT 153 (888)
T ss_pred EEEecCceEEeeccCCC-------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHh
Confidence 33444455554444322 24456889999999999999999999999999999999976433322221111110
Q ss_pred cCCC--CceEEecccCCCcceeecCCCceeccCCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC------
Q 006424 247 SNAK--EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------ 317 (645)
Q Consensus 247 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~------ 317 (645)
.... ...+.+.... .. .-+.|+++.+...... .|.+.|+.+++.+ ..+++++.|+.+++|++..
T Consensus 154 ~~~F~~~~~~lvS~sK--Ds----~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 154 QALFLNGDSFLVSVSK--DS----MIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred HHhccCCCeEEEEecc--Cc----eEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeeccccccc
Confidence 0000 0011100000 00 0144555554444443 5778888888876 6778888888888887610
Q ss_pred ----------C--------eEEEE--------------------------------------------------------
Q 006424 318 ----------N--------QCLNV-------------------------------------------------------- 323 (645)
Q Consensus 318 ----------~--------~~~~~-------------------------------------------------------- 323 (645)
| +.+..
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 0 00000
Q ss_pred ---------------------------------------------------------------ecCCCcEEEEEEeeCCC
Q 006424 324 ---------------------------------------------------------------FDHHNYVTCVQFNPIDD 340 (645)
Q Consensus 324 ---------------------------------------------------------------~~~~~~v~~l~~~p~~~ 340 (645)
.+|...|.+++++. +.
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~ 385 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DS 385 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cc
Confidence 12444566777765 44
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
..+++|+ .+.+++|+..+.+++...... .+.+..|-|.++++++|...|.+.+||+...... + ....|.+.
T Consensus 386 ~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-E------ti~AHdga 456 (888)
T KOG0306|consen 386 ILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-E------TIRAHDGA 456 (888)
T ss_pred eeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-h------hhhccccc
Confidence 4444443 567888888877777655554 6777888888888888888888888888765531 1 23356789
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCc-------ceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVD-------VIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-------~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
|.+++.+||+ ..+++|+.|.+|++||..- ....+.. ..-...|.++.+||||++||.+=-|.+++||
T Consensus 457 IWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 9999999998 8999999999999999431 1111111 1235679999999999999999999999999
Q ss_pred eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc--cccCCccCCCCccccCccccC
Q 006424 489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSN 566 (645)
Q Consensus 489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~fs~ 566 (645)
-+++.+.... .+.|.=+++++.-+||+..+++.+.| ..+++|-. -+++.-+-.|+..+.++-|-|
T Consensus 536 flDtlKFfls----------LYGHkLPV~smDIS~DSklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 536 FLDTLKFFLS----------LYGHKLPVLSMDISPDSKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred Eecceeeeee----------ecccccceeEEeccCCcCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 9998753322 23344456677777777777766655 45666655 344556777888999999999
Q ss_pred CCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeEeEEEecCcccc
Q 006424 567 DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFHNYGLPIR 644 (645)
Q Consensus 567 dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~Iriw~~~g~~~~ 644 (645)
+.....+++. |++++-||...- ...+....|... ..++++ +|.++||+|.|.+||+|..--.++.
T Consensus 603 ~~~~FFt~gK-D~kvKqWDg~kF-----------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 603 KTHLFFTCGK-DGKVKQWDGEKF-----------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred cceeEEEecC-cceEEeechhhh-----------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeeccCccee
Confidence 9988899998 999999998766 223333344433 355666 5999999999999999998776654
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=243.18 Aligned_cols=299 Identities=19% Similarity=0.258 Sum_probs=247.0
Q ss_pred ccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCC
Q 006424 90 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEK 169 (645)
Q Consensus 90 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (645)
+..+.-+..|.+|..+|+...|.|++.. +++... |..+-.|
T Consensus 34 s~l~ap~m~l~gh~geI~~~~F~P~gs~-~aSgG~------------Dr~I~LW-------------------------- 74 (338)
T KOG0265|consen 34 SSLQAPIMLLPGHKGEIYTIKFHPDGSC-FASGGS------------DRAIVLW-------------------------- 74 (338)
T ss_pred ccccchhhhcCCCcceEEEEEECCCCCe-EeecCC------------cceEEEE--------------------------
Confidence 4456667789999999999999997665 666555 4433333
Q ss_pred CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424 170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 249 (645)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (645)
+....+. -.-.+++|+++|..+.|.+|++.|+++|.|++|+.||+++
T Consensus 75 ---------nv~gdce------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------ 121 (338)
T KOG0265|consen 75 ---------NVYGDCE------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------ 121 (338)
T ss_pred ---------ecccccc------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------
Confidence 1111111 1223669999999999999999999999999999999998
Q ss_pred CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCC
Q 006424 250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHH 327 (645)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 327 (645)
++.++.+++|..-|+.+.-+.-| .+.|++.|+++++||+++..+++++...
T Consensus 122 ---------------------------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k 174 (338)
T KOG0265|consen 122 ---------------------------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK 174 (338)
T ss_pred ---------------------------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc
Confidence 56678889999999999844445 6779999999999999999999999989
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
..++++.|.. .+..+++|+-|+.|++||++.+.... +.+|.+.|+.+..+|+|.++.+-+.|.++++||++.......
T Consensus 175 yqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 175 YQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred eeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 9999999998 88899999999999999998877654 789999999999999999999999999999999986554433
Q ss_pred EEe-eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 407 KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 407 ~~~-~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
.+. +.++....+.....++|+|++ ..+.+|+.|..+++||.......+....|.+.|++++|+|...+|.+++.|.+|
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 221 233322334456778999997 899999999999999988777778888899999999999999999999999999
Q ss_pred EEEe
Q 006424 486 YVWN 489 (645)
Q Consensus 486 ~iwd 489 (645)
++=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1e-31 Score=254.38 Aligned_cols=294 Identities=19% Similarity=0.238 Sum_probs=234.1
Q ss_pred hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424 96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM 175 (645)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (645)
.+.|.+|.+|||.+.|++++.+ ++++++ |.+...|-
T Consensus 217 ~qil~~htdEVWfl~FS~nGky-LAsaSk------------D~Taiiw~------------------------------- 252 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKY-LASASK------------DSTAIIWI------------------------------- 252 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCee-EeeccC------------CceEEEEE-------------------------------
Confidence 4578899999999999999999 999988 44444430
Q ss_pred HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424 176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 255 (645)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (645)
.....++.+.+++.+|..+|..+.||||.+||++++.|..+++||+.++..
T Consensus 253 --------v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--------------------- 303 (519)
T KOG0293|consen 253 --------VVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--------------------- 303 (519)
T ss_pred --------EecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh---------------------
Confidence 001122457788999999999999999999999999999999999998533
Q ss_pred ecccCCCcceeecCCCceeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEE
Q 006424 256 FGKKKSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVT 331 (645)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~ 331 (645)
...+ .+|...+.+++|.||+ .+++|+.|+++..||++... ....+ ....|.
T Consensus 304 ------------------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 304 ------------------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVH 358 (519)
T ss_pred ------------------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeE
Confidence 2222 2457889999999999 89999999999999997443 33332 335699
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424 332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
+++..+ ||+++++.+.|..|++|+..+...........+|++++.+.+++++++.-.+..+++||+........ +.
T Consensus 359 dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k---Y~ 434 (519)
T KOG0293|consen 359 DLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK---YF 434 (519)
T ss_pred EEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH---hh
Confidence 999999 99999999999999999998877766777788999999999999999999999999999996655433 22
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeC
Q 006424 412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNY 490 (645)
Q Consensus 412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~ 490 (645)
++.. +..+..-+|--.+..++++|++|+.|+||+...........+|...|++++|+|.. .++|++|+||+|+||..
T Consensus 435 Ghkq--~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 435 GHKQ--GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cccc--cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 3222 23455556665444799999999999999977554444445589999999999965 57899999999999987
Q ss_pred CCC
Q 006424 491 DEL 493 (645)
Q Consensus 491 ~~~ 493 (645)
...
T Consensus 513 ~~~ 515 (519)
T KOG0293|consen 513 SDN 515 (519)
T ss_pred Ccc
Confidence 643
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=9.5e-30 Score=288.70 Aligned_cols=303 Identities=16% Similarity=0.311 Sum_probs=228.2
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+..|.+.|++++|+|+|++||+|+.||.|+||++........
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------------------------------- 520 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------------------------------- 520 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------------------------
Confidence 3556999999999999999999999999999999764100000
Q ss_pred ccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
....+...+. +...|.+++|++. .+|++++.||+|++||+.+++.+..+ .|...|++++|+|.++.+|++|+.|++
T Consensus 521 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 521 DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 0011222333 3467999999874 38999999999999999999888877 488999999999757889999999999
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|++||++++.......+...+.++.|+ ++|.++++|+.||.|++||++........+ ..|...|.++.|.+ +
T Consensus 600 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~-~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD-S 672 (793)
T ss_pred EEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC-C
Confidence 999999988877655566789999995 579999999999999999998765332222 23457899999974 4
Q ss_pred CcEEEEEECCCeEEEEECCc--------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424 431 SQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 502 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 502 (645)
.++++++.|+.|++||+.. ....+. .|...+..++|+|++++|++|+.||.|++|+........
T Consensus 673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~----- 744 (793)
T PLN00181 673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL----- 744 (793)
T ss_pred -CEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-----
Confidence 6899999999999999863 223333 477889999999999999999999999999976441100
Q ss_pred CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424 503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 582 (645)
Q Consensus 503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~ 582 (645)
.. .+...+.+.. .....+...+.+++|++++..+++++. +|.|+
T Consensus 745 ---s~-~~~~~~~~~~-------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~ 788 (793)
T PLN00181 745 ---SY-KFKTIDPVSG-------------------------------LEVDDASQFISSVCWRGQSSTLVAANS-TGNIK 788 (793)
T ss_pred ---EE-ecccCCcccc-------------------------------cccCCCCcEEEEEEEcCCCCeEEEecC-CCcEE
Confidence 00 0000000000 001223456778888888888888887 88999
Q ss_pred CCCC
Q 006424 583 LWDV 586 (645)
Q Consensus 583 iWd~ 586 (645)
+|++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9975
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.7e-29 Score=227.32 Aligned_cols=231 Identities=22% Similarity=0.382 Sum_probs=183.8
Q ss_pred CceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCC---CeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 279 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~---~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.++.+.+|.+.+..++|+|. | .|+||+.|+.|++|+... -.+...+ .|...|+.++|+| .+++|++||.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 36788899999999999998 6 799999999999999985 3344444 4999999999999 9999999999999
Q ss_pred EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
+.||.-..+. .-.+.+|...|.+++|+++|++||+++.|..|-||.+..... ... ..-...|...|..+.|+|
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec---~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FEC---IAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEE---EeeeccccccccEEEEcC
Confidence 9999876554 334789999999999999999999999999999999984332 222 222334567899999999
Q ss_pred CCCcEEEEEECCCeEEEEECC---c--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424 429 DESQRIMITSEDSKLRILDGV---D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~---~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 503 (645)
.. .+|++++.|++|++|+-. . +.+.+.+ |...|.+++|++.|..|+++++|++++||.+...-
T Consensus 161 t~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--------- 228 (312)
T KOG0645|consen 161 TE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--------- 228 (312)
T ss_pred Cc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------
Confidence 85 799999999999999854 2 3444444 77799999999999999999999999999965320
Q ss_pred cceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
.-.+.+.+..++|. ...+++.+.
T Consensus 229 -----~~~~sr~~Y~v~W~--~~~IaS~gg 251 (312)
T KOG0645|consen 229 -----SGMHSRALYDVPWD--NGVIASGGG 251 (312)
T ss_pred -----chhcccceEeeeec--ccceEeccC
Confidence 11124567778887 333444433
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=2e-29 Score=251.32 Aligned_cols=277 Identities=24% Similarity=0.441 Sum_probs=220.6
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.+++++|.++|++++|+|++++|++++.||.+++|++.+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~----------------------------------------- 40 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET----------------------------------------- 40 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC-----------------------------------------
Confidence 356789999999999999999999999999999999986
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
......+.+|...+..+.|++++ .+++++.||.|++||+.+++.+..+. |...+.++.|+| +++++++++.|+
T Consensus 41 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 115 (289)
T cd00200 41 ----GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115 (289)
T ss_pred ----CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence 33456677899999999999987 89999999999999999877766664 777999999999 788888888899
Q ss_pred cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.|++||+++++... +..|...+.+++|+|++.++++++.+|.+++||++....... +. .+...+.++.|+|+
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~ 188 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD 188 (289)
T ss_pred eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence 99999999766554 556888999999999999999888899999999986554222 22 23468999999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 509 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 509 (645)
+ ..+++++.|+.|++||............+...+.++.|+|++.++++++.||.|++||+.++......
T Consensus 189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---------- 257 (289)
T cd00200 189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL---------- 257 (289)
T ss_pred c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----------
Confidence 7 78888888999999998754333333347779999999999999999888999999999764211110
Q ss_pred eecCCcEEEEecCCCCccccccCC
Q 006424 510 FFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 510 ~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
..+.+.+..++|++++..+++.+.
T Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 258 SGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cccCCcEEEEEECCCCCEEEEecC
Confidence 012334556666666555554443
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=6.9e-30 Score=269.55 Aligned_cols=282 Identities=31% Similarity=0.490 Sum_probs=226.6
Q ss_pred ccccccc-cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 193 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 193 ~~~l~~H-~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
.+.+.+| ...|.++.|+++|++|++++.|+.+++|+......
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 5556555 78999999999999999999999999999865210
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec-CCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~-~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
...+.+.+|...|.+++|+|++ ++++++.|++|++||+ ..+..++++ +|...|++++|+| .++++++|+.
T Consensus 194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~ 266 (456)
T KOG0266|consen 194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD 266 (456)
T ss_pred ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence 1455668999999999999998 9999999999999999 555888888 5999999999999 7899999999
Q ss_pred CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424 349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
|++|++||++++++.. +..|.+.|++++|+++++++++++.||.|++||+.+.... ... +... .... ++++++|
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~~-~~~~-~~~~~~f 342 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL--LSGA-ENSA-PVTSVQF 342 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec--ccCC-CCCC-ceeEEEE
Confidence 9999999999977765 7889999999999999999999999999999999988743 111 1111 1112 6999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCC-CCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424 427 SRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~-~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 503 (645)
+|++ .++++++.|+.+++||+... ...+.++... ..+.+...++.+.++++|+.|+.|++||+.++.......
T Consensus 343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--- 418 (456)
T KOG0266|consen 343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--- 418 (456)
T ss_pred CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---
Confidence 9998 89999999999999998844 3444443222 244555668899999999999999999999864322221
Q ss_pred cceeeeeecCCcEEEEecCCCCccccccC
Q 006424 504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
.+....+..++|++...+++..+
T Consensus 419 ------~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 419 ------GHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ------CCCCCceeccccCCCcCeeeecC
Confidence 11135567778888887777554
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.7e-30 Score=229.16 Aligned_cols=280 Identities=18% Similarity=0.272 Sum_probs=238.9
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|++...+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---------------------------------------- 53 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---------------------------------------- 53 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh----------------------------------------
Confidence 6688999999999999999999999999999999998631
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
...-....+|.+.|-.++|+|.+ .+++++.|.+|++||++.+++.........-..+.|+| +++++++++.|..
T Consensus 54 ---~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~ 129 (313)
T KOG1407|consen 54 ---FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR 129 (313)
T ss_pred ---hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence 11123456899999999999753 89999999999999999999999988777667789999 9999999999999
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
|...|.++.+..........++.++|+.++.+++.....|.|.|.....-+. .. ....|.....||.|+|+|
T Consensus 130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp-v~------si~AH~snCicI~f~p~G- 201 (313)
T KOG1407|consen 130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP-VQ------SIKAHPSNCICIEFDPDG- 201 (313)
T ss_pred EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc-cc------ccccCCcceEEEEECCCC-
Confidence 9999999999988888888899999998888888888889999988764432 22 233456789999999998
Q ss_pred cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
+++|+|+.|..+.+||+.+.+..-....+.-+|..+.||.||++||+||+|..|-|=++++|... -...
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-----------~eI~ 270 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV-----------WEIP 270 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE-----------EEee
Confidence 89999999999999999876665555557889999999999999999999999999999988432 2344
Q ss_pred cCCcEEEEecCCCCccccccCCCCc
Q 006424 512 SEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 512 ~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.+++...|+|+|....|+-.++|.-
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCCC
Confidence 5788899999999999997777643
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-31 Score=245.26 Aligned_cols=246 Identities=23% Similarity=0.405 Sum_probs=219.3
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+.|+||+++|..+.|+..|++||+++.|=.+++||..+.
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------------------- 182 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------------------- 182 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------------------
Confidence 35679999999999999999999999999999999998761
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+.++.+.+|+..|.+++|-|.| +++|++.|.+|+.|++.++.++.++. |...|.-++.+. ||.++++++.|
T Consensus 183 -----~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~d 256 (406)
T KOG0295|consen 183 -----FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSND 256 (406)
T ss_pred -----HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCC
Confidence 34567888999999999999987 99999999999999999999999995 889999999998 99999999999
Q ss_pred CcEEEEeCCCCcEEE-eeccCCCeEEEEEccC---------------CCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 350 GKVRIWGVCEKRVVD-WADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 350 g~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~---------------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
.+|++|-+.++.+.. +..|..+|.+++|-|. +.++.+++.|++|++||+.++..... +.+
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t---L~g- 332 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT---LVG- 332 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE---Eec-
Confidence 999999999987654 6788899999998762 25899999999999999999876544 222
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
|...|..++|+|.| ++|+++..|+++++||++..........|..-+++++|+.+..+++||+-|.++++|..
T Consensus 333 ---hdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 ---HDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---ccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 35899999999998 89999999999999999877666666678999999999999999999999999999974
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=226.22 Aligned_cols=248 Identities=25% Similarity=0.420 Sum_probs=202.0
Q ss_pred cccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+...+.+++|++.|+.++|+|- |..|||||.|+.|++|+...++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s---------------------------------- 49 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS---------------------------------- 49 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------------------------
Confidence 3456778999999999999998 89999999999999999874211
Q ss_pred CCCceeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEe-cCCCcEEEEEEeeCCCCEE
Q 006424 269 PDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~-~~~~~v~~l~~~p~~~~~l 343 (645)
......+ .+|+..|+.++|+|.| +|+++|.|.++.||.-..+ +++..+ +|.+.|.|++|++ +|++|
T Consensus 50 --------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~L 120 (312)
T KOG0645|consen 50 --------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYL 120 (312)
T ss_pred --------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEE
Confidence 0111222 3799999999999998 9999999999999987644 566666 4999999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCcE---E-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCceeeeEEeeccccccCC
Q 006424 344 ISGSIDGKVRIWGVCEKRV---V-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~---~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~ 418 (645)
|+++.|..|-+|.+..+.- . .+.+|...|..+.|+|...+|++++.|++|++|.-. ...... ......|.
T Consensus 121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c-----~~tl~g~~ 195 (312)
T KOG0645|consen 121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC-----VQTLDGHE 195 (312)
T ss_pred EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE-----EEEecCcc
Confidence 9999999999999875432 2 367899999999999999999999999999999887 333321 11222345
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
..|.++.|++.| ..|++++.|++|+||-..... . ..|...+..+.|. ...|++++.|+.|++|.-..
T Consensus 196 ~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~---~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 196 NTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL---S-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ceEEEEEecCCC-ceEEEecCCcceEeeeeccCc---c-hhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 689999999998 899999999999999854221 1 2367788999997 56899999999999997653
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=257.41 Aligned_cols=291 Identities=18% Similarity=0.298 Sum_probs=244.4
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
..+.||...|.+++++.++.++..+..+.+++|+..+.++++++... .+.+..|.| .++++++|...|.+.+||+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 35679999999999999886666666789999999999999999766 788999999 8999999999999999999887
Q ss_pred cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce----eeeEEeecc-ccccCCCCeEEEEEcCCCCcEE
Q 006424 361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHD-RKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~-~~~~~~~~i~~i~~s~~g~~~l 434 (645)
.++. ...|.+.+.+++.+||++.+++|+.|.+|++||..-... ....+.++. ..-.-...|.|+.+|||| .+|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence 7665 567999999999999999999999999999999752111 001111111 111224789999999998 899
Q ss_pred EEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424 435 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 514 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 514 (645)
+++--|++|+||-+.+..--+...+|.-+|.+|..|||++.++|||.|..|+||-++-|.+... .|.|+.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS----------~fAHdD 593 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS----------FFAHDD 593 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh----------hhcccC
Confidence 9999999999999888877777788999999999999999999999999999999887743221 245678
Q ss_pred cEEEEecCCCCccccccCCCCccccCccc--cccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424 515 VSVAVQWPGIGTEQKSLCSSSLRDCSQKW--DNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 588 (645)
Q Consensus 515 ~~~~v~~s~~~~~l~~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~ 588 (645)
.+..|.|.|....+++++.|+. ++-| +.++..+...+|...+.+++.+|+|.+++|++. |..|++|+...
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~k---vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGK---VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEecCcce---EEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeeeccC
Confidence 8899999999999998888754 6678 446777788999999999999999999999999 99999998654
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2e-31 Score=257.85 Aligned_cols=293 Identities=23% Similarity=0.328 Sum_probs=234.8
Q ss_pred cCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 276 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
..+.+..+.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.++++| +|..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 3567889999999999999999 45 889999999999999965 8899998 4999999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|++||+++|++.........++++.|+|++ +.+++|+.|+.|+.||+++++...+ ...|-+.|..+.|-++|
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG 354 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence 999999999999999999999999999998 8999999999999999999885432 22234789999999998
Q ss_pred CcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424 431 SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 509 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 509 (645)
..+++++.|+.++||+.+.... .+....+.....++..+|++++++.-+.|..|.++.+........+..
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~-------- 425 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR-------- 425 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh--------
Confidence 8999999999999999774332 222223444566888999999999999999999999765421111100
Q ss_pred eecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424 510 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 510 ~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
| .|.. ..++...+.|||||.+|+|++. +|++.+||..+-
T Consensus 426 f--eGh~--------------------------------------vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~ 464 (503)
T KOG0282|consen 426 F--EGHS--------------------------------------VAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTT 464 (503)
T ss_pred h--ccee--------------------------------------ccCceeeEEEcCCCCeEEeecC-CccEEEeechhh
Confidence 0 0100 1234566789999999999998 999999998876
Q ss_pred CCCCcCChhhhHhhhh--hccCCCCCccCCCCcceEEEEecCCCeEeEEE
Q 006424 590 SDGYCQDPQQQRLQQQ--CLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 637 (645)
Q Consensus 590 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~ 637 (645)
++... .+...+..+.+.|-....++|+|+||.|++|+
T Consensus 465 -----------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -----------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 22222 23334444566665677899999999999996
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.1e-29 Score=263.68 Aligned_cols=250 Identities=25% Similarity=0.417 Sum_probs=211.6
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+++.+|...|.+++|+|+|+++++|+.|++|+|||+..
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------------------- 234 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------------------- 234 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC----------------------------------------
Confidence 5566789999999999999999999999999999999944
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
....++++.+|...|++++|+|++ .+++|+.|++|++||+++++++..+. |.+.|++++|++ ++++|++++.|
T Consensus 235 ----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 235 ----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred ----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 246678999999999999999998 99999999999999999999999996 899999999999 99999999999
Q ss_pred CcEEEEeCCCCcE--E-EeeccCC--CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 350 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 350 g~i~vwd~~~~~~--~-~~~~~~~--~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
+.|++||+.++.. . .+..+.. .+++++|+|++.++++++.|+.+++||+.......... .+... ...+.+.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~-~~~~~~~ 385 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNL-VRCIFSP 385 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCc-ceeEecc
Confidence 9999999999983 2 3444444 59999999999999999999999999999776644322 21111 0234455
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCC-CCCeEEEEEecCCCEEEEEe--CCccEEEEeCC
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD 491 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~ 491 (645)
..++.+ .++++|+.|+.|++||............| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 557776 89999999999999998865444444446 88899999999999999998 78999999865
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=245.21 Aligned_cols=248 Identities=15% Similarity=0.325 Sum_probs=216.3
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+++..|+..|.++.|+|...+++++-.+|.|.|||.++
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet---------------------------------------- 44 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET---------------------------------------- 44 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------------------
Confidence 4456777999999999999999999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
...++.+.-..-+|.+..|-.. +.+++|+.|..|+||+..+++.+..|. |.+.|+|++.+| ...+++++|.|
T Consensus 45 -----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDD 118 (794)
T KOG0276|consen 45 -----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDD 118 (794)
T ss_pred -----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCc
Confidence 4456777777889999999865 599999999999999999999999996 999999999999 88899999999
Q ss_pred CcEEEEeCCCCc--EEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 350 GKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 350 g~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
-+|++||.+.+= ...+.+|...|.+++|+| |.+.+++++-|++|++|.+........ +.+ |...|+|+.|
T Consensus 119 m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---l~g----HekGVN~Vdy 191 (794)
T KOG0276|consen 119 MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---LEG----HEKGVNCVDY 191 (794)
T ss_pred cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee---eec----cccCcceEEe
Confidence 999999998753 445889999999999999 667999999999999999987654322 333 4578999999
Q ss_pred cCCC-CcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 427 SRDE-SQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 427 s~~g-~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
-+.| ..+|++|+.|.+|+|||.. ++++++.+ |...|..+.|+|.-..++|||+||+++||+-.+-.
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 8864 3589999999999999977 45666666 78899999999999999999999999999987654
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3e-30 Score=239.26 Aligned_cols=244 Identities=24% Similarity=0.451 Sum_probs=205.2
Q ss_pred cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
..+..+..+.|.||+|.|.|+.| +.+.+++||.|.+|+|||+++
T Consensus 223 D~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t---------------------------------- 266 (499)
T KOG0281|consen 223 DKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT---------------------------------- 266 (499)
T ss_pred ccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC----------------------------------
Confidence 34556688889999999999999 566999999999999999998
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE----ecCCCcEEEEEEeeCCCC
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~v~~l~~~p~~~~ 341 (645)
++++.++.+|...|..+.|+ +|+++++|.|.++.+||+.+...+.. .+|...|+.+.| +.+
T Consensus 267 -----------ge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~k 331 (499)
T KOG0281|consen 267 -----------GEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDK 331 (499)
T ss_pred -----------CchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccc
Confidence 67788999999999999997 48999999999999999987653322 258999999999 567
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 342 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
++++++.|.+|++|++.+.+.+. +.+|+..|-|+.+ .|+++++|+.|.+|++||+..+..... +. +|..-
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv---Le----GHEeL 402 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---LE----GHEEL 402 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH---Hh----chHHh
Confidence 99999999999999999999876 6789999988876 589999999999999999998875322 22 34578
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCccee---------eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH---------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~---------~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
|.|+.|.. ..+++|+.||+|++||+..... ......|.+.|..+.| |...+++++.|.+|.|||+.
T Consensus 403 vRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 403 VRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred hhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 99999975 4799999999999999763221 2223458889999999 56789999999999999998
Q ss_pred CCC
Q 006424 492 ELC 494 (645)
Q Consensus 492 ~~~ 494 (645)
++.
T Consensus 478 ~~~ 480 (499)
T KOG0281|consen 478 NGP 480 (499)
T ss_pred CCC
Confidence 773
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=232.86 Aligned_cols=286 Identities=21% Similarity=0.381 Sum_probs=231.1
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+....+-|..|||||+||++|+.||-|-+||..++.... ++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkY 253 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKY 253 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhh
Confidence 456678999999999999999999999999998754311 0011
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
+....+--|...|.|++|+.|. .+++|+.||.|++|.+++|+|++.|. |...|+|+.|+. |+..+++++.|.++++
T Consensus 254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI 332 (508)
T ss_pred hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence 2223445588999999999886 89999999999999999999999996 999999999999 9999999999999999
Q ss_pred EeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 355 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 355 wd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
.-+.+++++. +.+|.+.|+...|+++|.++++++.||+|++|+.++..+....-... ...+|.++..-|.++..
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-----~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG-----TDYPVNSVILLPKNPEH 407 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC-----CcccceeEEEcCCCCce
Confidence 9999988765 88999999999999999999999999999999999877643321111 24789999999988899
Q ss_pred EEEEECCCeEEEEECC-cceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 434 IMITSEDSKLRILDGV-DVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~-~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
++++...++|+|.++. +..+.+.. ....+...+.+.||.|.++.+.++|+.++.|.+.++...... .-
T Consensus 408 ~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----------~V 477 (508)
T KOG0275|consen 408 FIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----------PV 477 (508)
T ss_pred EEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----------ec
Confidence 9999999999999976 34444443 334556778889999999999999999999999988533221 11
Q ss_pred cCCcEEEEecCCCCccccccCCCCc
Q 006424 512 SEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 512 ~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
++..+..++.+|....|++.+.|++
T Consensus 478 hEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 478 HEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred ccccccccccCcccchhhhhcccch
Confidence 2333556777777777776666644
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-29 Score=256.72 Aligned_cols=283 Identities=15% Similarity=0.243 Sum_probs=230.8
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
|...+..|..++|+|...+++++-..|.|++||.+-
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-------------------------------------------- 40 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------------------------------------------- 40 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhh--------------------------------------------
Confidence 455677899999999999999999999999999875
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
+..+..|..|.++|..++|+|++ .++||+.|-.|+||+..+.+++.++ +|-+.|+.+.|++ .--.++++|.|.+|+
T Consensus 41 -~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 41 -GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR 118 (1202)
T ss_pred -hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence 56678899999999999999987 9999999999999999999998877 6999999999999 888999999999999
Q ss_pred EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE----------------------ee
Q 006424 354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV----------------------DF 410 (645)
Q Consensus 354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------------~~ 410 (645)
||+..+++++. +.+|...|.|..|+|....+++++-|.+|++||+.+-+...... -.
T Consensus 119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 99999988776 78999999999999999999999999999999997433211100 00
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
.....+|...|+-++|+|.- .++++|+.|..|++|...... ..-...+|...|.++-|+|..+++++.|+|++|+||
T Consensus 199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 11123467789999999986 699999999999999976422 122234589999999999999999999999999999
Q ss_pred eCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCc
Q 006424 489 NYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 489 d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
|+....... .|. .++....++-+|....++...+.++
T Consensus 278 Dm~kRt~v~-----------tfrrendRFW~laahP~lNLfAAgHDsGm 315 (1202)
T KOG0292|consen 278 DMTKRTSVQ-----------TFRRENDRFWILAAHPELNLFAAGHDSGM 315 (1202)
T ss_pred eccccccee-----------eeeccCCeEEEEEecCCcceeeeecCCce
Confidence 998763222 221 2445566666776666665554443
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5e-28 Score=241.18 Aligned_cols=242 Identities=26% Similarity=0.490 Sum_probs=204.0
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+.+|...+.++.|+|++++|++++.||.|++|++.+
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~------------------------------------------ 82 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET------------------------------------------ 82 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc------------------------------------------
Confidence 44668999999999999999999999999999999986
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.+....+.+|...|.++.|++++ .+++++.|+.|.+||+.+++....+. |...+.+++|+| ++.++++++.|+.
T Consensus 83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~ 158 (289)
T cd00200 83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158 (289)
T ss_pred ---ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCc
Confidence 34456677899999999999986 66677779999999999888887776 888999999999 7888888888999
Q ss_pred EEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|++||+++++... +..+...+.+++|+|+++.+++++.+|.+++||++....... + . .+...+.++.|+|++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~--~----~~~~~i~~~~~~~~~ 231 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-L--R----GHENGVNSVAFSPDG 231 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-h--h----hcCCceEEEEEcCCC
Confidence 9999998766544 556777999999999999999999999999999987543221 1 1 234689999999995
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
.++++++.|+.|++||............|...+.+++|+|++++|++++.||.|++|+
T Consensus 232 -~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 -YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7888888899999999875444444445778999999999999999999999999996
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=232.39 Aligned_cols=293 Identities=18% Similarity=0.280 Sum_probs=243.8
Q ss_pred ccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCC
Q 006424 90 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEK 169 (645)
Q Consensus 90 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (645)
.-.-.|..-+.+|..+|..+++.|+..- +++-+. |++++.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~------------DrtikIw-------------------------- 178 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEW-FATGSA------------DRTIKIW-------------------------- 178 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCcee-EEecCC------------CceeEEE--------------------------
Confidence 4445677789999999999999999554 777776 6655555
Q ss_pred CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424 170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 249 (645)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (645)
....-.+..+|.||...|..+++|+-..||++++.|+.|+.||++.
T Consensus 179 ----------------Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~------------------ 224 (460)
T KOG0285|consen 179 ----------------DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY------------------ 224 (460)
T ss_pred ----------------EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh------------------
Confidence 2222336677899999999999999999999999999999999986
Q ss_pred CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CC
Q 006424 250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HH 327 (645)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~ 327 (645)
.+.++.+.||-..|.|++.+|. ..|++|+.|.++++||+++...+..+. |.
T Consensus 225 ---------------------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 225 ---------------------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ---------------------------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence 6778999999999999999997 499999999999999999999998885 99
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
.+|..+.+.| .+..+++|+.|++|++||++.++.. ....|+..+.+++.+|....+|+++.| .|+-|++..+.....
T Consensus 278 ~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 278 NPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred CcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 9999999999 5667999999999999999987754 578899999999999999999998877 678898876664322
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeE---ee---cCCCCCeEEEEEecCCCEEEE
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF---KG---LPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~---~~~~~~i~~v~~sp~~~~l~t 478 (645)
...|...|.+++.+.|| ++++|+..|.+.+||.+... +.. .. ......|.+.+|+..|..|+|
T Consensus 356 -------lsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 356 -------LSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred -------cccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 33345789999999996 89999999999999976321 111 11 224567899999999999999
Q ss_pred EeCCccEEEEeCCCC
Q 006424 479 IGDDCRVYVWNYDEL 493 (645)
Q Consensus 479 ~s~dg~I~iwd~~~~ 493 (645)
|..|.+|++|.-+..
T Consensus 427 ~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 427 GEADKTIKMYKEDEH 441 (460)
T ss_pred ccCCcceEEEecccc
Confidence 999999999986654
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.2e-29 Score=221.66 Aligned_cols=242 Identities=19% Similarity=0.335 Sum_probs=207.0
Q ss_pred ccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
-.+.+..++|+++. +.+++++.||++++||+.. ..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS 94 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence 46789999999964 5889999999999999654 25
Q ss_pred CCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
.+++.++.|..+|.++.|++- + .++++|.|++|++|+...++.+.+|. |...|...+|+|..++.++++|.|+++++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 788999999999999999975 3 68888999999999999999999884 99999999999999999999999999999
Q ss_pred EeCCC-CcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 355 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 355 wd~~~-~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
||++. ++...+..|...+.++.|+. +.+.+++|+.|+.|+.||++..+.+...+. .|+-.|..+.|||....
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~------gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN------GHGLAVRKVKFSPHHAS 248 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec------CCceEEEEEecCcchhh
Confidence 99986 66666888999999999998 667899999999999999998887655443 34578999999998778
Q ss_pred EEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeC
Q 006424 433 RIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~ 490 (645)
+|++++.|-+++|||... ....-....|..-+..+.||+ +..++|+++.|+.++||+-
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999999662 111222234888899999988 5679999999999999984
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7e-28 Score=216.43 Aligned_cols=287 Identities=19% Similarity=0.235 Sum_probs=226.2
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
|+||..+++.+.|+.+|.+|.+++.|.+..+|-..+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------------------------------------- 41 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------------------------------------- 41 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC--------------------------------------------
Confidence 789999999999999999999999999999997765
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-----C
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----D 349 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-----d 349 (645)
+..+.++.||.+.|+|+..+.+. .+++|+.|.++++||+++|+++..+..+.+|..+.|++ ++++++.+.. .
T Consensus 42 -GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 42 -GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYT 119 (327)
T ss_pred -CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcc
Confidence 56688999999999999998765 89999999999999999999999999999999999999 8888777654 3
Q ss_pred CcEEEEeCCC-------Cc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 350 GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 350 g~i~vwd~~~-------~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
+.|.++|++. .+ ...+..+.+.++.+-|.|-+++|++|..||.|..||++++......... |...|
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~------h~~~I 193 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE------HSSKI 193 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh------hcccc
Confidence 5799999983 33 5556777899999999999999999999999999999988765443333 34789
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE--EeCCCCCcCCCc
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV--WNYDELCFPSSK 499 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i--wd~~~~~~~~~~ 499 (645)
+.++++++. .++++++.|.+-++||..+.... +......+|++.+++|...+++.|+.....-| =+.+.++....-
T Consensus 194 nd~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~-Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 194 NDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL-KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred ccccccCCc-ceEEecccCccceeeeccceeeE-EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence 999999997 89999999999999998754332 22235779999999998888888764322222 122222211110
Q ss_pred ccCCcceeee----eecCCcEEEEecCCCCccccccCCCCccc
Q 006424 500 QKNSVRSCEH----FFSEGVSVAVQWPGIGTEQKSLCSSSLRD 538 (645)
Q Consensus 500 ~~~~~~~~~~----~~~~g~~~~v~~s~~~~~l~~~~~~~~~~ 538 (645)
-....+.. -.|-|++.+++++|+|..-++.+.|+..+
T Consensus 272 --yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 272 --YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred --HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 00001111 12567899999999999877776665433
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.4e-29 Score=232.25 Aligned_cols=244 Identities=23% Similarity=0.381 Sum_probs=200.1
Q ss_pred cccccccccccc---cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424 186 EFTALYTSQEIQ---AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262 (645)
Q Consensus 186 ~~~~~~~~~~l~---~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (645)
|.-+-+..+++. .....|.|+.+ |...+++|..|.+|+|||..+
T Consensus 180 Wr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~------------------------------- 226 (499)
T KOG0281|consen 180 WRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS------------------------------- 226 (499)
T ss_pred hhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEecccc-------------------------------
Confidence 334444444443 24578999999 455899999999999999986
Q ss_pred cceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424 263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
......+.||++.|.|+.|.. ..+++||.|.+|++||+++++++.++ .|...|..+.|+ ++
T Consensus 227 --------------~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng 288 (499)
T KOG0281|consen 227 --------------LECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NG 288 (499)
T ss_pred --------------HHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CC
Confidence 455778899999999999963 48999999999999999999999887 588899999995 57
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 342 YFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
++++++.|.++.+||+....-.. +.+|...|+.+.|+ .+++++++.|.+|++|++.+...... ++ +|
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt---l~----gH 359 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT---LN----GH 359 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh---hh----cc
Confidence 99999999999999998765332 57899999999985 56999999999999999998765321 22 23
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
...|.|+++. | +++++|+.|.+|++||+.. +...+.+ |..-|.++.| |.+.+++|+.||+|+|||+..+.-
T Consensus 360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cccceehhcc--C-eEEEecCCCceEEEEeccccHHHHHHhc--hHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 4678888774 3 7999999999999999874 4445555 8889999999 678999999999999999998754
Q ss_pred C
Q 006424 496 P 496 (645)
Q Consensus 496 ~ 496 (645)
+
T Consensus 433 p 433 (499)
T KOG0281|consen 433 P 433 (499)
T ss_pred C
Confidence 3
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-26 Score=213.96 Aligned_cols=284 Identities=24% Similarity=0.376 Sum_probs=221.6
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
+...+.|..-.+.|+++.|+++|.+|++++.|-++++||..+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-------------------------------------- 45 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-------------------------------------- 45 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence 345566777788999999999999999999999999999987
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeC--CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~--dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s 345 (645)
++.++++..++..|..++|... ..++.++. |.+|+..++.+++.++.|. |...|+.++.+| -++.+++
T Consensus 46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS 117 (311)
T KOG1446|consen 46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS 117 (311)
T ss_pred -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence 5556777778888888888644 46666665 8899999999999999995 999999999999 7799999
Q ss_pred EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccccccCCCCeEEE
Q 006424 346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
++.|++|++||++..++.-+...... ..++|+|.|-++|++...+.|++||++.. .-+...+.+.. ......+.+
T Consensus 118 ~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l 193 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL 193 (311)
T ss_pred cccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence 99999999999998777665444332 34689999999999998889999999876 33334443332 124678999
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCC-eEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 501 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~-i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 501 (645)
.|+|+| ++++.++..+.+++.|.- .....+..+...+. -...+|+||++++++|++||+|.+|+++++........
T Consensus 194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999998 789999999999999955 44555666544442 25778999999999999999999999988854333222
Q ss_pred CCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
. ..+.+..+.|+|....+++.++
T Consensus 273 ~---------~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 273 P---------NGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred C---------CCCCccccccCCceeeeeecCc
Confidence 1 1234455557777666665554
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=6.7e-27 Score=265.45 Aligned_cols=296 Identities=16% Similarity=0.212 Sum_probs=225.8
Q ss_pred hhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHhh
Q 006424 99 LEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVK 178 (645)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (645)
+..|...|..++|.+++.. +++++. |+.++.|-.. . .... .
T Consensus 479 ~~~~~~~V~~i~fs~dg~~-latgg~------------D~~I~iwd~~----------~------~~~~--~-------- 519 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEF-FATAGV------------NKKIKIFECE----------S------IIKD--G-------- 519 (793)
T ss_pred ccCCCCcEEEEEECCCCCE-EEEEeC------------CCEEEEEECC----------c------cccc--c--------
Confidence 4457888999999999876 777777 7777766100 0 0000 0
Q ss_pred hcccccccccccccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424 179 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257 (645)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (645)
.. .......+. +...|.+++|+|. +.+|++|+.||+|++||+.+
T Consensus 520 ----~~----~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-------------------------- 564 (793)
T PLN00181 520 ----RD----IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-------------------------- 564 (793)
T ss_pred ----cc----cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence 00 000111222 3457999999874 78999999999999999986
Q ss_pred ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEE
Q 006424 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 335 (645)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~ 335 (645)
.+.+..+.+|.+.|++++|+| ++ +|++|+.|++|++||++++..+..+.+...+.++.|
T Consensus 565 -------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 565 -------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred -------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 344677889999999999996 55 899999999999999999999888877778999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 336 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 336 ~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
++.++.+|++|+.||.|++||++... ...+.+|...|.++.|. ++.++++++.|+.|++||++......... ....
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l~~ 703 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PLHS 703 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ceEE
Confidence 76579999999999999999998764 34567899999999997 78899999999999999997532110000 0001
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eEe-----------ecCCCCCeEEEEEecCCCEEEEEe
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFK-----------GLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~-----------~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
...|...+.++.|+|++ .+|++|+.|+.|++|+...... .+. ...+...|.+++|+|++..|++|+
T Consensus 704 ~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 704 FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 12345778999999997 7999999999999999653221 111 122445699999999999999999
Q ss_pred CCccEEEEeC
Q 006424 481 DDCRVYVWNY 490 (645)
Q Consensus 481 ~dg~I~iwd~ 490 (645)
.||.|+||++
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999996
No 55
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4e-27 Score=215.25 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=216.3
Q ss_pred cccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 198 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 198 ~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.-.+.|.+++||| ...+++.||.||+||+|+++....
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------ 62 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------ 62 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence 3567899999999 455777999999999999986210
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC--EEEEEeCCCcEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR 353 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~s~dg~i~ 353 (645)
.. -+....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ... .|++||.|.+|+
T Consensus 63 ~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 63 LV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK 140 (347)
T ss_pred cc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence 01 13445799999999999998 89999999999999999998887778999999999987 555 799999999999
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
.||.+....+......+.++++..- ...++++..+..|.+|++++.........-+ ..-.+.|++..++. ..
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~Sp-----Lk~Q~R~va~f~d~-~~ 212 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESP-----LKWQTRCVACFQDK-DG 212 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCc-----ccceeeEEEEEecC-Cc
Confidence 9999999999888889999888753 4578889999999999998776544432222 12568899988886 56
Q ss_pred EEEEECCCeEEEEECCcc--e--eeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC-ccc
Q 006424 434 IMITSEDSKLRILDGVDV--I--HKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQK 501 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~--~--~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~-~~~ 501 (645)
.+.|+-+|.+.|..+... . ..|+.|.. -..|++++|+|.-..|+|+|.||+..+||-+....... ...
T Consensus 213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 699999999999886643 2 33444332 12578899999999999999999999999876543322 344
Q ss_pred CCcceeeeeecCCcEEEEecCCC
Q 006424 502 NSVRSCEHFFSEGVSVAVQWPGI 524 (645)
Q Consensus 502 ~~~~~~~~~~~~g~~~~v~~s~~ 524 (645)
....+|..|+.+|.+.+.+.+-|
T Consensus 293 ~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCccceeEecCCCCEEEEEeecc
Confidence 45667778888888877664433
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2e-27 Score=222.49 Aligned_cols=243 Identities=21% Similarity=0.337 Sum_probs=198.4
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.-++.+|++.|+|+.||.||.+||||+.+|.|+||+..++.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~--------------------------------------- 139 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG--------------------------------------- 139 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc---------------------------------------
Confidence 44578999999999999999999999999999999998742
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
....+...-..+.-+.|+|.+ .|++|+.||.+.+|.+.++...+.+ +|+.++++=.|.| +|+.++++..||
T Consensus 140 ------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dg 212 (399)
T KOG0296|consen 140 ------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDG 212 (399)
T ss_pred ------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCc
Confidence 233343445677888999987 8999999999999999986555555 6999999999999 999999999999
Q ss_pred cEEEEeCCCCcEEEeec----------------------------------------------------cCCCeEEEEE-
Q 006424 351 KVRIWGVCEKRVVDWAD----------------------------------------------------VRDVISAICY- 377 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~----------------------------------------------------~~~~v~~l~~- 377 (645)
+|++|+..++....... +...+.++.+
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999998876442211 0111222333
Q ss_pred --ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424 378 --IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 455 (645)
Q Consensus 378 --sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~ 455 (645)
+..-.+.|+|+-||+|.|||+.....+. ...|...|+.+.|-++ .+|++++.+|.|+.||.+.....+
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRH--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhhe--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEE
Confidence 2334578899999999999998765432 2334578999999994 699999999999999999887777
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
....|...|.+++++|+.++++|+|.|++.+||++.
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 777799999999999999999999999999999864
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.4e-29 Score=220.42 Aligned_cols=287 Identities=21% Similarity=0.331 Sum_probs=236.5
Q ss_pred ccccccccCcEEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 193 SQEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fsp---dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
-.+..||+.+|..++||| +|-+|++++.||.=.+-+=++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-------------------------------------- 48 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-------------------------------------- 48 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC--------------------------------------
Confidence 345789999999999996 788999999999876655444
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
+.-+.++.||.+.|+..+.+.+. +.++++.|-+-++||.-+|..+..|.|..-|.+++|+. +.++|++|+.
T Consensus 49 -------gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~ 120 (334)
T KOG0278|consen 49 -------GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQ 120 (334)
T ss_pred -------CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccch
Confidence 44578999999999999988775 77899999999999999999999999999999999999 9999999999
Q ss_pred CCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 349 DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 349 dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
+..+++||++.. ....+.+|.+.|..+.|....+.+++++.|++|++||.+++.... .+.+. .+|+++.+
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~-sL~~~-------s~VtSlEv 192 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ-SLEFN-------SPVTSLEV 192 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE-EEecC-------CCCcceee
Confidence 999999999864 456788999999999999999999999999999999999887533 33332 67999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS 506 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 506 (645)
+++| .+++....+.|.+||..... .++...-...|.+...+|+...+++|++|+.++.||+.++.....
T Consensus 193 s~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-------- 261 (334)
T KOG0278|consen 193 SQDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-------- 261 (334)
T ss_pred ccCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee--------
Confidence 9997 57777788899999976432 233333456789999999999999999999999999998832111
Q ss_pred eeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424 507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 586 (645)
Q Consensus 507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~ 586 (645)
+ ..+|.+.+.++.|||||..-++++. ||+|++|..
T Consensus 262 ---~-----------------------------------------nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt 296 (334)
T KOG0278|consen 262 ---Y-----------------------------------------NKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQT 296 (334)
T ss_pred ---c-----------------------------------------ccCCCCceEEEEECCCCceeeccCC-CceEEEEEe
Confidence 0 1234455666677777777778887 899999987
Q ss_pred ccC
Q 006424 587 TID 589 (645)
Q Consensus 587 ~~~ 589 (645)
..+
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 665
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-27 Score=234.31 Aligned_cols=247 Identities=19% Similarity=0.274 Sum_probs=210.7
Q ss_pred cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
....+++.++-..-+|.+..|-+-.+++++|++|..|+||+..+
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------ 86 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------ 86 (794)
T ss_pred ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence 34446677777788999999999999999999999999999988
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~~l~~~p~~~~~l~ 344 (645)
...++.+..|.+.|.+++.+|.. +++|+|.|-+|++||.+.+ .+.++| +|...|.+++|+|.|.+.++
T Consensus 87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 56688999999999999999986 9999999999999999865 456677 49999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 345 SGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
+++.|++|++|.+.+..+ .++.+|...|+|++|-+.| .+|++|+.|.++++||..+..+... ..+|...|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv 230 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV 230 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence 999999999999987554 5678999999999998855 5999999999999999998876432 23346789
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i 487 (645)
..+.|+|.- .++++|++||+++||+..+....-...-....+.+++-.+.++.++.|.++|.|.+
T Consensus 231 s~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 231 SFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred eEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999996 79999999999999997644333333335678999999999999999988887765
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.9e-28 Score=220.53 Aligned_cols=311 Identities=18% Similarity=0.312 Sum_probs=237.0
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
..+....+..|++++.+.+|||||.++||||.|..|+|.|++..-..... ..+.-
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-------------~em~~------------ 155 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-------------KEMIS------------ 155 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-------------hhhcc------------
Confidence 34455567889999999999999999999999999999998742110000 00000
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEecCCCcEEEEEEeeCCCCEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~ 344 (645)
.--+.....++++..|..+|+++.|+|.. .|++|+.|++|+++|+..... .+.+....+|.++.|+| .|.+++
T Consensus 156 --~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefll 232 (430)
T KOG0640|consen 156 --GDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLL 232 (430)
T ss_pred --CCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEE
Confidence 00000124578889999999999999976 899999999999999975433 34455777999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 345 SGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+|..-.++++||+.+-++.. -.+|.+.|+++.+++.|+..++|+.||.|++||--.+++....-..++ +..
T Consensus 233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gse 307 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GSE 307 (430)
T ss_pred EecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cce
Confidence 99999999999999987764 356889999999999999999999999999999877666433333333 478
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCC---CeEEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG---SQMSASFTTTGKHIISIGD-DCRVYVWNYDELC 494 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~---~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~ 494 (645)
|.+..|..+| +++++++.|..+++|.+. ..+..+.+.+..+ .-+...|.....|++.-.+ .+.+.-||-++..
T Consensus 308 vcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 308 VCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred eeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 9999999998 899999999999999976 4556666643222 2355678888888887654 5789999998874
Q ss_pred cCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 495 FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
... .....++|.+..+.-+|.+..+.+++.|.. .++|..
T Consensus 387 r~~---------l~slgHn~a~R~i~HSP~~p~FmTcsdD~r---aRFWyr 425 (430)
T KOG0640|consen 387 RVA---------LLSLGHNGAVRWIVHSPVEPAFMTCSDDFR---ARFWYR 425 (430)
T ss_pred hhh---------hcccCCCCCceEEEeCCCCCceeeecccce---eeeeee
Confidence 322 224456788888888999988887777643 445644
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=9.9e-28 Score=227.83 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=211.8
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
...+|.|-.+.|+++.|.++++++++++.|+.+++|++..
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~---------------------------------------- 250 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS---------------------------------------- 250 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------------------------
Confidence 4567888999999999999999999999999999999986
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
.+...++.||++.|+++.|.... .+++|+.|.+|++||+....|.++.-..+.+..+..+ ...+++|..|+
T Consensus 251 -----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~Dk 322 (459)
T KOG0288|consen 251 -----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDK 322 (459)
T ss_pred -----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccccc
Confidence 56678999999999999998765 5999999999999999999999888777777887774 46789999999
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+|++||.++..+.......+.|+++..+++|..+++.+.|.++.+.|+++...... +...+... ....+.+.|||++
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~--asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKC--ASDWTRVVFSPDG 399 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eecccccc--ccccceeEECCCC
Confidence 99999999999988888888999999999999999999999999999998876433 22222222 2448899999998
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCC--CeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
.|+++|+.||.|+||++........+..... .|++++|+|.|..|++++.++.+.+|
T Consensus 400 -~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 -SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 8999999999999999886555555433333 59999999999999999999999999
No 61
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=241.33 Aligned_cols=382 Identities=16% Similarity=0.190 Sum_probs=281.3
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
+.....+.+++++...|+++.=+|--..+|.|..+|+|.+++++.
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~----------------------------------- 233 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF----------------------------------- 233 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-----------------------------------
Confidence 344557788999999999999999888999999999999999987
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~ 342 (645)
.+.+.+++...+.|+.++|..|| .+++|+..|.+.+||++..+.+.... |.+.|..+.|.| ....
T Consensus 234 ----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epV 302 (910)
T KOG1539|consen 234 ----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPV 302 (910)
T ss_pred ----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCce
Confidence 45567777445999999999887 78899999999999999888777664 888999999999 8889
Q ss_pred EEEEeCCCcEEEEeCCC--C--cEE-EeeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEec-----------------
Q 006424 343 FISGSIDGKVRIWGVCE--K--RVV-DWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS----------------- 399 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~--~--~~~-~~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~----------------- 399 (645)
+++++.|..+++|=..+ + +.+ ...+|..+..++.|. .+|..+.+++.|++.+.+++.
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999999885543 2 233 356788888888887 577778888887766665542
Q ss_pred ------------------------------------------------CCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 400 ------------------------------------------------GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 400 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
+...-...+. +.........+++++.++.|
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CG- 460 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCG- 460 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccC-
Confidence 1111000000 00011123578899999998
Q ss_pred cEEEEEECCCeEEEEECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 508 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 508 (645)
++.+.|+..|.|-+|++...+..-.. ..|.++|++++.+.-++.+++++.+|.+++||+................++
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI 540 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence 89999999999999999876655444 568999999999999999999999999999999887533333333333333
Q ss_pred eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424 509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 588 (645)
Q Consensus 509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~ 588 (645)
..+....+++++-..-...++....- .-.+.+.+|+..++.++|||||+++++|+. |++|++||+++
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~------------kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt 607 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTR------------KVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT 607 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhh------------hhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC
Confidence 33333333333322222222211111 112246788999999999999999999999 99999999999
Q ss_pred CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCC-CeEeEEEecC
Q 006424 589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCD-GMIKTFHNYG 640 (645)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~D-g~Iriw~~~g 640 (645)
+. ++.-..-...+..+.++|+ |++|+|+..| .-|.+|-+.-
T Consensus 608 ~~----------lID~~~vd~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 608 GT----------LIDGLLVDSPCTSLSFSPN-GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cc----------eeeeEecCCcceeeEECCC-CCEEEEEEecCceEEEEEchh
Confidence 92 2222333455555677774 9999999999 6799998653
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=219.23 Aligned_cols=295 Identities=20% Similarity=0.309 Sum_probs=217.4
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC------------C------eEEEEe-cCCCcEEEEEEeeCC
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPID 339 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~------------~------~~~~~~-~~~~~v~~l~~~p~~ 339 (645)
...+..|++++.+.+|++|| ++++|+.|..|+|.|++. + -.++++ .|.+.|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 35567899999999999999 889999999999999862 1 123333 6999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
..+|++|+.|++|++||+..... ........+|.++.|+|.|.++++|..-..+++||+.+.+.-.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~q 259 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDDQ 259 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----cccc
Confidence 99999999999999999976443 3355567789999999999999999999999999999877643322 3345
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
|...|+++.+++.| ++.++++.||.|++||.- .++.++........|++..|..+|+|+++.+.|..+++|.+.++.
T Consensus 260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 67899999999998 899999999999999954 455666655566789999999999999999999999999998873
Q ss_pred cCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCC
Q 006424 495 FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA 574 (645)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~ 574 (645)
.... +...|.. + .+..-+.-.|.....++...
T Consensus 339 ~l~~----------------------YtGAg~t------g--------------------rq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 339 MLKE----------------------YTGAGTT------G--------------------RQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred eEEE----------------------EecCCcc------c--------------------chhhhhhhhhcCccceEEcc
Confidence 2111 1111000 0 00001111233333333333
Q ss_pred CCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCC-CCcceEEEEecCCCeEeEEEe
Q 006424 575 TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 575 s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
+...+.+..||..++. +......+|.+...-+. ++.+-.++|+|.|-++|+|-.
T Consensus 371 DEas~slcsWdaRtad----------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 371 DEASNSLCSWDARTAD----------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccccCceeeccccchh----------hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3334567889988873 33333445555444332 335778999999999999974
No 63
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1e-26 Score=213.59 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=211.2
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-.+.|.++.|+|.++.|+.++.||++++||+... .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------------------------------------------~ 46 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------------------------------------------S 46 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---------------------------------------------h
Confidence 3567999999999999999999999999999762 1
Q ss_pred CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
+...-.|..++.+++|.++..+++|+.||.|+.+|+.++.......|...|.|+.+++ ..+.+++|+.|++|++||.+
T Consensus 47 -l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 47 -LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred -hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence 2222348999999999998899999999999999999998888888999999999999 78899999999999999999
Q ss_pred CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 359 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
.............|.++.. .|+.|++|+.+..+.+||+++....... ....-...+.|+++.|++ .=+++++
T Consensus 125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS 196 (323)
T KOG1036|consen 125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS 196 (323)
T ss_pred ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence 8666666666668888876 4778999999999999999987765421 111123568999999975 6788999
Q ss_pred CCCeEEEEECCcc------eeeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 439 EDSKLRILDGVDV------IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 439 ~dg~I~iwd~~~~------~~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
-||+|.+=..... .-.|+.|.. -.+|++++|+|-.+.+|||+.||.|.+||+.+.+.....+.-
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--- 273 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--- 273 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC---
Confidence 9999988554321 222333211 137899999999999999999999999999877433222211
Q ss_pred eeeeeecCCcEEEEecCCCCccccccCC
Q 006424 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
++.+..++|+.+|..||..++
T Consensus 274 -------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 274 -------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -------CCceEEEEeccCCCeEEEEec
Confidence 234566777777777775554
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.5e-27 Score=242.90 Aligned_cols=245 Identities=22% Similarity=0.431 Sum_probs=207.9
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
+...|..|.|+|..++|+|++.+++|||+|-.|++|+.++
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---------------------------------------- 82 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---------------------------------------- 82 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc----------------------------------------
Confidence 5667889999999999999999999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+++.++.||-+.|..+.|++.- .++|+|.|.+|+||+..+++++..+ +|...|.|..|+| ....++++|.|
T Consensus 83 -----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLD 156 (1202)
T KOG0292|consen 83 -----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLD 156 (1202)
T ss_pred -----ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEeccc
Confidence 56678899999999999999875 9999999999999999999999988 5999999999999 89999999999
Q ss_pred CcEEEEeCCCCc----------------------------EE--EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 350 GKVRIWGVCEKR----------------------------VV--DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 350 g~i~vwd~~~~~----------------------------~~--~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
.+|+|||+..-+ ++ .+.+|...|+-++|+|.-..+++|+.|..|++|.+.
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 999999985411 11 146788999999999999999999999999999997
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424 400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~ 477 (645)
..+. .+ ....++|.+.|+++-|+|.. .++++.++|+.|+|||+. +..++++. ..+....++-+|..++++
T Consensus 237 etKa-WE----vDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 237 ETKA-WE----VDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFA 308 (1202)
T ss_pred cccc-ee----ehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcceee
Confidence 5432 11 12234457899999999985 799999999999999987 45555554 567788899999999888
Q ss_pred EEeCCccEEEEeCC
Q 006424 478 SIGDDCRVYVWNYD 491 (645)
Q Consensus 478 t~s~dg~I~iwd~~ 491 (645)
+|-+ +-+.+|.++
T Consensus 309 AgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 309 AGHD-SGMIVFKLE 321 (1202)
T ss_pred eecC-CceEEEEEc
Confidence 7754 445555554
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.6e-28 Score=230.79 Aligned_cols=280 Identities=20% Similarity=0.370 Sum_probs=229.3
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
....+..|.+.|..+.|-++...|++|+.|..|++|++....
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------------------- 208 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------------------- 208 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------------------
Confidence 345578899999999999998899999999999999987632
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
...+.++.|-.+.|+.+.|.+++ .+++++.|+.+++|++...+...++ +|.+.|+++.|.. ....+++|+.|
T Consensus 209 -----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~D 282 (459)
T KOG0288|consen 209 -----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSAD 282 (459)
T ss_pred -----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeecccc
Confidence 23467788888999999999887 8999999999999999999988888 4999999999987 55559999999
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.+|++||+....+....-....+..|+.+ ...+++|..|++|++||.++...... +.. ++.|+++..+++
T Consensus 283 RtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~~ 352 (459)
T KOG0288|consen 283 RTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSMD 352 (459)
T ss_pred chhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeeccC
Confidence 99999999998887766666777777776 56788999999999999998775432 222 268999999999
Q ss_pred CCcEEEEEECCCeEEEEECCc--ceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 430 ESQRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~--~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
| ..+++++.|.++.+.|++. ....+.. .......+.+.|||++.|+++||.||.|+||++.+++........
T Consensus 353 g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s--- 428 (459)
T KOG0288|consen 353 G-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS--- 428 (459)
T ss_pred C-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC---
Confidence 8 7888889999999999874 3344433 223445889999999999999999999999999998644332211
Q ss_pred eeeeeecCCcEEEEecCCCCccccccCCC
Q 006424 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
+.+..+++++|+|.|..|++++.+
T Consensus 429 -----~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 429 -----TSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred -----CCCcceEEEEEcCCCchhhcccCC
Confidence 112368999999999999987764
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.6e-27 Score=210.64 Aligned_cols=285 Identities=15% Similarity=0.171 Sum_probs=222.4
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
.++||+.+++.+.|+.+| +|++|+.|.+..+|-..+|+.+.++. |.+.|+|+..+- +...+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 467899999999999988 99999999999999998999999984 999999999998 899999999999999999999
Q ss_pred CcEEEeeccCCCeEEEEEccCCCEEEEEec-----CCeEEEEEecCCce------eeeEEeeccccccCCCCeEEEEEcC
Q 006424 360 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDL------KLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 360 ~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-----dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
++++.....+.+|..+.|+++|++++..+. .+.|.++|++.... +...+.. +...++.+.|.|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t------~~skit~a~Wg~ 157 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT------PDSKITSALWGP 157 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC------Cccceeeeeecc
Confidence 999999999999999999999998887754 46799999984432 1222222 247899999999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 507 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 507 (645)
-+ .+|++|..||.|.+||.++...... ...|...|+.+.+++|..+++|+|.|.+-++||+.+.........
T Consensus 158 l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------ 230 (327)
T KOG0643|consen 158 LG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ 230 (327)
T ss_pred cC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------
Confidence 97 8999999999999999987544433 355888999999999999999999999999999998754333322
Q ss_pred eeeecCCcEEEEecCCCCcccc-----------ccCCCCccccCccccc--cccCCccCCCCccccCccccCCCCCCcCC
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQK-----------SLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSNDGPCRGSA 574 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~-----------~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~fs~dg~~l~s~ 574 (645)
+.++.+++.+|-...+. +..........++.+. .+......+|-+.+.+++|+|||+.-+|+
T Consensus 231 -----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSG 305 (327)
T KOG0643|consen 231 -----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSG 305 (327)
T ss_pred -----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccC
Confidence 33444445554333222 1111111111111121 22333677888899999999999999998
Q ss_pred CCCCCcCCCCCC
Q 006424 575 TWPAEKLPLWDV 586 (645)
Q Consensus 575 s~~d~~i~iWd~ 586 (645)
.. ||.+++.-.
T Consensus 306 GE-DG~VR~h~F 316 (327)
T KOG0643|consen 306 GE-DGYVRLHHF 316 (327)
T ss_pred CC-CceEEEEEe
Confidence 88 898887643
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-27 Score=207.54 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=226.9
Q ss_pred chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424 94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN 173 (645)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (645)
.-++.|..+|..|..+-+..++++ -.++.. |++++.|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY-~ltcGs------------drtvrLW------------------------------ 44 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNY-CLTCGS------------DRTVRLW------------------------------ 44 (307)
T ss_pred hhceeecccccceEEEEEccCCCE-EEEcCC------------CceEEee------------------------------
Confidence 345577888889999999999887 444555 5655555
Q ss_pred hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424 174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253 (645)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (645)
+.. +-.+++++.+|...|..++.+.|...+++|+.|+.+.+||+.+
T Consensus 45 -----Np~-------rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T---------------------- 90 (307)
T KOG0316|consen 45 -----NPL-------RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT---------------------- 90 (307)
T ss_pred -----ccc-------ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc----------------------
Confidence 111 1226788999999999999999999999999999999999998
Q ss_pred EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEec-CCCc
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNY 329 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~ 329 (645)
++.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++. ++++.+. ..+.
T Consensus 91 -----------------------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 91 -----------------------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred -----------------------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 67789999999999999999875 8999999999999999754 5677775 6778
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 330 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
|.++.. .+..++.|+.||+++.||++.+.... .....+|++++|+++++..++++.|+++++.|-.+++.....
T Consensus 148 V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-- 221 (307)
T KOG0316|consen 148 VSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-- 221 (307)
T ss_pred eeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh--
Confidence 999988 46889999999999999999988654 334568999999999999999999999999999988765432
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC-eEEEEEecCCCEEEEEeCCccEEEE
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
.++.. ...-...+++... .++++|++||.|++||+.+.....+...+... +.+++++|....++++. ++.+..|
T Consensus 222 -kGhkn--~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 222 -KGHKN--MEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred -ccccc--ceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence 22111 1122344566554 79999999999999998876666665556666 89999999988888876 4556666
Q ss_pred e
Q 006424 489 N 489 (645)
Q Consensus 489 d 489 (645)
-
T Consensus 297 ~ 297 (307)
T KOG0316|consen 297 Y 297 (307)
T ss_pred e
Confidence 4
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=229.92 Aligned_cols=290 Identities=19% Similarity=0.294 Sum_probs=218.1
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
-.|++|+..|.++++.|.|..|+|||.|-+|++||+.........
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------------------- 205 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------------------- 205 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-----------------------------------
Confidence 348899999999999999999999999999999999874332211
Q ss_pred eccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-------------ecCCCcEEEEEEeeC
Q 006424 274 QIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-------------FDHHNYVTCVQFNPI 338 (645)
Q Consensus 274 ~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-------------~~~~~~v~~l~~~p~ 338 (645)
.+.+ ......|.++.|++.+ .|+..+.....+|+|-...+.+.. -+|...++|.+|+|.
T Consensus 206 ------fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~ 279 (641)
T KOG0772|consen 206 ------FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD 279 (641)
T ss_pred ------hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC
Confidence 1122 2344579999999986 777777778999999764443322 148889999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-EEEe------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKR-VVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~-~~~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
+.+.+++++.||++++||+...+ .... .+.+-.+++++|+|+|+.||+|+.||.|.+|+.......... .+
T Consensus 280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~v- 357 (641)
T KOG0772|consen 280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KV- 357 (641)
T ss_pred cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-Ee-
Confidence 88899999999999999997633 2221 233457899999999999999999999999998655433221 11
Q ss_pred cccccC--CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeC-----
Q 006424 412 DRKKTS--GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGD----- 481 (645)
Q Consensus 412 ~~~~~~--~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~----- 481 (645)
...| +..|+|+.||++| ++|++-+.|+++++||+++. +....+.....+-+.++|||+.++|+||+.
T Consensus 358 --k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 358 --KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred --eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 1122 3489999999998 89999999999999998854 444455555667789999999999999874
Q ss_pred -CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCcccc
Q 006424 482 -DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC 539 (645)
Q Consensus 482 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~ 539 (645)
.|.+++||..+....... +-+...+..+.|+|--..+...++++..+.
T Consensus 435 ~~g~L~f~d~~t~d~v~ki----------~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKI----------DISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred CCceEEEEeccceeeEEEe----------cCCCceEEEEeecchhhheeeecCCCceEE
Confidence 478999997765322211 122455778899998777776666655443
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.4e-27 Score=209.30 Aligned_cols=201 Identities=18% Similarity=0.324 Sum_probs=167.9
Q ss_pred CccCeEEEEEcCC--CeEEEEeCCCcEEEEecCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-
Q 006424 286 HKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK- 360 (645)
Q Consensus 286 h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~- 360 (645)
-.+.+..++|+++ +.+++++.||++++||... ..++..++ |...|.++.|++.....++++|.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4578999999976 4899999999999999642 34566664 99999999999988888999999999999997654
Q ss_pred cEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 361 RVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
.+.++.+|...|....|+| ..+.+++++.||.+++||++....... +..+ ...|.|+.|+.-+.+.+++|+.
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah------~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH------NSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec------cceeEeecccccCCcEEEecCC
Confidence 4666889999999999999 577999999999999999987654333 3333 3689999999987789999999
Q ss_pred CCeEEEEECCcce-eeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCC
Q 006424 440 DSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 440 dg~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|+.|+.||++... ..+....|.-.|..+.|||. ...||+++.|-+++|||...+
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999987432 23344558889999999996 468999999999999998755
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.2e-26 Score=218.42 Aligned_cols=252 Identities=18% Similarity=0.270 Sum_probs=211.6
Q ss_pred cccccccccCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 192 TSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
..+++.||.++|.+++|.-.. ..++++|.|.++++|.++.+...
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~--------------------------------- 182 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK--------------------------------- 182 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh---------------------------------
Confidence 567789999999988885433 36999999999999998764321
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-------------------------CeEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCLN 322 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-------------------------~~~~~ 322 (645)
.+.+....||...|-+++..+++ .+++||.|.+|++|+..+ +.++.
T Consensus 183 --------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 183 --------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred --------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 12233445999999999999887 999999999999999321 11223
Q ss_pred Ee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424 323 VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 323 ~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~ 401 (645)
++ +|..+|.++.|++ ...+++++.|.+|+.||+.++...........++++.++|..++|++|+.|..+++||.+++
T Consensus 255 tl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 33 5999999999986 77899999999999999999999888888899999999999999999999999999999988
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
.-......+.+ |.+.|.++.|+|.+...|++++.|+++++||.+... ..+....|...|.++.|. ++.+|++||
T Consensus 333 ~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 333 DGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG 407 (423)
T ss_pred CCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEecc
Confidence 76665555555 468999999999988899999999999999999665 566677799999999996 577999999
Q ss_pred CCccEEEEeCC
Q 006424 481 DDCRVYVWNYD 491 (645)
Q Consensus 481 ~dg~I~iwd~~ 491 (645)
.|.+|+|+...
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999999754
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=211.28 Aligned_cols=243 Identities=21% Similarity=0.338 Sum_probs=204.9
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..-.+.+|.++|++++. +|.|+||||.|-+|+|||+..
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k---------------------------------------- 72 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK---------------------------------------- 72 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------------------
Confidence 34457899999999999 588999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s 347 (645)
...+..+-.|.+.|+++.|.+.- .|++|+.||.|.+|+...-.++..+. |...|+.++.+| .+++.++.+
T Consensus 73 -----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg 146 (362)
T KOG0294|consen 73 -----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVG 146 (362)
T ss_pred -----hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEc
Confidence 45567777899999999999763 89999999999999999999999986 888999999999 999999999
Q ss_pred CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
.|+.+++||+-.++.-.........+.+.|+|.|.+++++..+ .|-+|.+.+...... +.. ...+.|+.|.
T Consensus 147 ~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l 217 (362)
T KOG0294|consen 147 GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFL 217 (362)
T ss_pred CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeec
Confidence 9999999999988877766666677779999999999988765 678888876554221 111 1457788887
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEE--ecCCCEEEEEeCCccEEEEeCCCC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~--sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.. ..+++|..|+.|.+||............|...|.++.+ .|++.+|+|+|+||.|+|||++..
T Consensus 218 ~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 218 DG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 65 58999999999999998765555555668999999884 567889999999999999999876
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=212.61 Aligned_cols=245 Identities=18% Similarity=0.287 Sum_probs=208.7
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+-+|.||++.|++...+.+...-|+++.|-+-++||.-+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t----------------------------------------- 90 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT----------------------------------------- 90 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh-----------------------------------------
Confidence 346889999999999999998999999999999999877
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-EEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
+..+..+. |..-|.+++|+.|. +|++|+.+..++|+|++..+. ...+ +|++.|..+.|.. ..+.+++++.|
T Consensus 91 ----gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd 164 (334)
T KOG0278|consen 91 ----GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADD 164 (334)
T ss_pred ----hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccC
Confidence 34456665 88999999999875 999999999999999976543 3334 5999999999998 78888888999
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
++||+||.+++..+.....+.+|+++.++++|+++.++ ..+.|.+||..+..... ...+ ...|.+.+++|+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-s~k~-------P~nV~SASL~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-SYKM-------PCNVESASLHPK 235 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-eccC-------ccccccccccCC
Confidence 99999999999999999999999999999999877665 46789999998776532 2222 257899999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
. ..+++|++|..++.||..+....-. ...|.++|.++.|+|+|...++||+||+|++|.+..++
T Consensus 236 k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 236 K-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred C-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 6 8999999999999999775444333 35689999999999999999999999999999987764
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.2e-28 Score=225.06 Aligned_cols=248 Identities=19% Similarity=0.311 Sum_probs=193.4
Q ss_pred ccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 193 SQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
...|.||.+.|.|++=+|.. ..+|||+.||.|+|||+...
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------------------------------------- 99 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------------------------------------- 99 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---------------------------------------
Confidence 34579999999999999987 78999999999999999873
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEE--------------------------------------
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW-------------------------------------- 313 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iw-------------------------------------- 313 (645)
.....+..|.+.|..|++.. +.+++++.|.+|+.|
T Consensus 100 ------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IW 172 (433)
T KOG0268|consen 100 ------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIW 172 (433)
T ss_pred ------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeec
Confidence 33445555555555555543 345555555555555
Q ss_pred ecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424 314 QVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 392 (645)
Q Consensus 314 d~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~ 392 (645)
|.....++..+. ....|.++.|+|....+|++|+.|+.|.+||++++..+.-.-....-+.++|+|.+-.+++|++|..
T Consensus 173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccccc
Confidence 444444444444 3456899999998888999999999999999999998887777777889999998889999999999
Q ss_pred EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEec
Q 006424 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT 471 (645)
Q Consensus 393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp 471 (645)
++.||++....+.. ....|.+.|.++.|+|.| +-+++||.|.+|+||..+.....-.. ......|.++.||.
T Consensus 253 lY~~DmR~l~~p~~------v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLN------VHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred ceehhhhhhcccch------hhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence 99999997766543 223456899999999998 89999999999999997643221111 11345799999999
Q ss_pred CCCEEEEEeCCccEEEEeCCCC
Q 006424 472 TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 472 ~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|.+|+++||+|+.|++|.-...
T Consensus 326 Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cccEEEecCCCcceeeeecchh
Confidence 9999999999999999987654
No 74
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.8e-25 Score=234.82 Aligned_cols=257 Identities=17% Similarity=0.195 Sum_probs=190.7
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|-..|+...+++|+..+++++.+.....|+...+.... .....+. ...
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-~~~~~G~-------------------------------~~~ 66 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-KHTDYGK-------------------------------LAS 66 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-ecccccc-------------------------------CCC
Confidence 44557777788898888999999989999876532110 0000000 011
Q ss_pred CceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCe-------EEEEe-cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 279 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~-------~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++. ++..+ +|...|.+++|+|..+++|++|+.
T Consensus 67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 1235779999999999998 55 89999999999999997652 33444 588999999999944579999999
Q ss_pred CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
|++|++||+++++... +..|...|.+++|+|+|.+|++++.||.|++||+++..... .+..+. ......+.|.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~-tl~~H~-----~~~~~~~~w~ 220 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS-SVEAHA-----SAKSQRCLWA 220 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE-EEecCC-----CCcceEEEEc
Confidence 9999999999887654 56788999999999999999999999999999999876432 222221 1334567888
Q ss_pred CCCCcEEEEEE----CCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424 428 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 494 (645)
Q Consensus 428 ~~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~ 494 (645)
+++ ..+++++ .|+.|++||+++....+.. ......+....|++++++|++++ .||.|++||+.++.
T Consensus 221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 886 4555543 4799999998754333322 12334566678999999999887 59999999998764
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=221.80 Aligned_cols=247 Identities=21% Similarity=0.358 Sum_probs=207.4
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+++....+.|.++.|-.||++||+|...|.|+|+|..+
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~------------------------------------------ 99 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS------------------------------------------ 99 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc------------------------------------------
Confidence 33445667899999999999999999999999999654
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
...++.+.+|+.+|..+.|+|++ .+++|+.|+.+++||+.+......+ +|++.|.|.+|+|.++.++++||.||
T Consensus 100 ---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 100 ---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred ---HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 33467889999999999999874 7889999999999999988864344 59999999999998888999999999
Q ss_pred cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.|++||++.. ..+....|..+|..+.+-|.|..+++++ ...+++||+.++...... ...|...|+|+.+..+
T Consensus 177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLASD 249 (487)
T ss_pred eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh------hhcccceEEEEEeecC
Confidence 9999999987 6667789999999999999999998876 568999999866543321 1124578999999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+ ..|++++-|+.|++||..+....... ...++|.+++.+|+++.++.|-.||.+.+=+....+
T Consensus 250 ~-~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 250 S-TRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred C-ceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 7 89999999999999996654443333 367899999999999999999999998887555443
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=4.4e-26 Score=214.51 Aligned_cols=265 Identities=20% Similarity=0.320 Sum_probs=215.2
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
-|.+.|.++... +++++||+.||.+++||.. +
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------G 134 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------G 134 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC----------------------------------------------C
Confidence 489999999887 7799999999999999986 5
Q ss_pred CCceeeccCccCeEEEEEcC-C---CeEEEEeCCCcEEEEecCCCeEEEE-----ecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 278 SPLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~-~---~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
+....+.||.++|.+++|.. + ..+++++.|.++++|.++.+..... -+|...|.++...+ ++..+++|+.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~ 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence 66788899999999999863 2 2699999999999999887654322 26999999999999 9999999999
Q ss_pred CCcEEEEeCCCC--------------------------cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424 349 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402 (645)
Q Consensus 349 dg~i~vwd~~~~--------------------------~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~ 402 (645)
|.+|.+|+..+. .++.+.+|..+|.++.|++ ...+++++.|.+|+.||+.+..
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 999999993210 1445789999999999987 6689999999999999999887
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCC-EEEE
Q 006424 403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGK-HIIS 478 (645)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~-~l~t 478 (645)
...... . ...++|+.++|.. .+|++|+.|..+++||.+. .........|...|.++.|+|... .|++
T Consensus 293 ~~~~~~---~-----~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 293 LKSTLT---T-----NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ceeeee---c-----CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 654322 2 2679999999985 8999999999999999773 233444455888999999999654 6788
Q ss_pred EeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424 479 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 530 (645)
Q Consensus 479 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~ 530 (645)
|+.|+++++||+++...++.. ...++..++++.|+..+..+..
T Consensus 364 ~S~D~t~klWDvRS~k~plyd---------I~~h~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYD---------IAGHNDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred EecCCeEEEEEeccCCCccee---------eccCCceEEEEeccCCceEEec
Confidence 999999999999987533332 1224778999999987655443
No 77
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.8e-26 Score=207.62 Aligned_cols=303 Identities=18% Similarity=0.262 Sum_probs=207.1
Q ss_pred chhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---------------eee
Q 006424 173 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---------------SCK 237 (645)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~---------------~~~ 237 (645)
+..+..+.+.+...|.+.....+|++|.+.|++++|+.||++|||++.|++|++|+++.... ...
T Consensus 59 ~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V 138 (420)
T KOG2096|consen 59 KHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV 138 (420)
T ss_pred cccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE
Confidence 33444555666667888888999999999999999999999999999999999999886322 122
Q ss_pred EecCCCCcccCCCCceEEecccCCCcceeecCCCcee----ccC---CCceeeccCccCeEEEEEcCCC-eEEEEeCCCc
Q 006424 238 SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ----IEE---SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 309 (645)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~ 309 (645)
.|.++.. .+.++...+....+....+.-+ ... ....--+.|.-.|..+-...++ ++++++.|..
T Consensus 139 ~FapDc~--------s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 139 VFAPDCK--------SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred EECCCcc--------eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 2222222 2222222222222211110000 000 0011112355566666655555 8999999999
Q ss_pred EEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CC------cEEEeeccCCCeEEEEEcc
Q 006424 310 VRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIP 379 (645)
Q Consensus 310 I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~---~~------~~~~~~~~~~~v~~l~~sp 379 (645)
|.+|+++ |+.+..+. ....-+..+.+| +|+++++++...-|++|.+- .| +...+.+|...|..++|++
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 9999999 88888886 334566778999 99999999999999999863 22 3456889999999999999
Q ss_pred CCCEEEEEecCCeEEEEEecCCceeee---EEe-eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--e
Q 006424 380 DGKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H 453 (645)
Q Consensus 380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~---~~~-~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~ 453 (645)
+...+++.+.||++++||..-...... .+. ........++.-..+.++|+| . +++.+....++++..++.. .
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~-~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-D-SLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-c-EEEeecCCceEEEEcccCccch
Confidence 999999999999999999863221100 000 001111223445589999998 4 4445556789999866422 2
Q ss_pred eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 454 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 454 ~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
.+. ..|...|.+++|+++|++++|++ |..+++..
T Consensus 367 ~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 ELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 222 34889999999999999999997 67777765
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=207.43 Aligned_cols=204 Identities=23% Similarity=0.370 Sum_probs=174.5
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
+.+.+|...|.+++|+-+| .|++|+.|+++.+|+++..+..... +|.+.|-.++|+|...+.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677899999999999988 9999999999999999877555443 48889999999998899999999999999999
Q ss_pred CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
++.+++.........-.-+.|+|+|.+++++..|..|.+.|.++.+.... ..+ ...+.-++|+.++ .+++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~-------~~e~ne~~w~~~n-d~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQF-------KFEVNEISWNNSN-DLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcc-------cceeeeeeecCCC-CEEEE
Confidence 99999988777777777789999999999999999999999997765332 111 2457778888776 67777
Q ss_pred EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...-|+|.|..............|.....++.|+|+|+|+|+|+.|..+.+||++..
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence 777899999987766666666668899999999999999999999999999999865
No 79
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=232.98 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=181.8
Q ss_pred ccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.+.....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------- 112 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------- 112 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence 3779999999999999 88999999999999999997531100
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
....++..+.+|...|.+++|+|++ .|++|+.|++|++||+++++.+..+. |...|.+++|+| ++++|++++.|+
T Consensus 113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg 190 (493)
T PTZ00421 113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK 190 (493)
T ss_pred -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence 0124567888999999999999863 89999999999999999999888875 888999999999 999999999999
Q ss_pred cEEEEeCCCCcEEE-eeccCCC-eEEEEEccCCCEEEEEe----cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 351 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~-v~~l~~sp~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
+|++||+++++.+. +..|.+. +..+.|.+++..+++++ .|+.|++||++....+........ ...+...
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~ 265 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP 265 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence 99999999887654 5556544 45678888887777654 478999999987654433322222 2456667
Q ss_pred EEcCCCCcEEEEEE-CCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCC
Q 006424 425 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTG 473 (645)
Q Consensus 425 ~~s~~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~ 473 (645)
.|++++ .++++++ .|+.|++||+.+....+.. ..+..++.+++|.|..
T Consensus 266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 789997 6777766 5999999998754333222 2245567888888853
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=217.03 Aligned_cols=294 Identities=18% Similarity=0.265 Sum_probs=230.4
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.+.+..|.-+|+||+++|++++.++++.||+|.=|++.++......+..+..
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev---------------------------- 186 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV---------------------------- 186 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------------------
Confidence 4556789999999999999999999999999999999886543111111100
Q ss_pred eeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 273 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 273 ~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
....+.+...- .+|...+.+++.++|+ +|++|+.|..|.||+.++.+.++.+ +|.+.|.+++|-. ..+.+++++.|
T Consensus 187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D 265 (479)
T KOG0299|consen 187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD 265 (479)
T ss_pred hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence 00001112222 4899999999999998 9999999999999999999999997 4999999999998 77889999999
Q ss_pred CcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 350 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 350 g~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
++|++|++.....+ .+.+|++.|.++.....++.+.+|+.|+++++|++......+ +.+ +.+.+-|++|-.
T Consensus 266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli----frg----~~~sidcv~~In 337 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI----FRG----GEGSIDCVAFIN 337 (479)
T ss_pred CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee----eeC----CCCCeeeEEEec
Confidence 99999999886655 488999999999999889999999999999999995443322 222 247899999998
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEee--c----------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFKG--L----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--~----------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
+ ..+++|+.+|.|.+|++.+....+.. . .+..+|++++..|...++++|+.+|.|++|-+.++...
T Consensus 338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 8 58999999999999997643333322 1 11238999999999999999999999999999887321
Q ss_pred CCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
. .....++-.|.+++++|+++|..++...
T Consensus 416 i-------~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 416 I-------NLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred c-------ceeeecccccEEEEEEEccCCCEEEEec
Confidence 1 1222334578899999999999666443
No 81
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-24 Score=229.36 Aligned_cols=231 Identities=16% Similarity=0.207 Sum_probs=170.1
Q ss_pred CCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCe--------EEEEe-cCCCcEEEEEEeeCCCC-EEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS 345 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~--------~~~~~-~~~~~v~~l~~~p~~~~-~l~s 345 (645)
.++..+.+|.+.|.+++|+|+ + +|++|+.|++|++||+.++. ++..+ +|...|.+++|+| ++. ++++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence 446788899999999999986 4 89999999999999997542 22233 5889999999999 665 5679
Q ss_pred EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe----
Q 006424 346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---- 421 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i---- 421 (645)
++.|++|++||+++++......+...|.+++|+|+|.+|++++.|+.|++||+++...... + .++ .+.+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l--~gH----~g~~~s~~ 216 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-F--HIH----DGGKNTKN 216 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-E--ecc----cCCceeEE
Confidence 9999999999999987665555778899999999999999999999999999998765432 2 222 2222
Q ss_pred -EEEEEcCCCCcEEEEEECCC----eEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 422 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 422 -~~i~~s~~g~~~l~~~s~dg----~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
....|++++ .++++++.|+ .|+|||++. .+.......+.+.+......+++.++++|+.|+.|++|++..+
T Consensus 217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 223456786 6788877664 799999874 3334444334444444445566899999999999999999765
Q ss_pred CcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424 494 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 526 (645)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~ 526 (645)
.. ..+..+.+..+..+++|.|...
T Consensus 296 ~~---------~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 296 SI---------RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cE---------EeecccccCCCccceEEccccc
Confidence 21 1112333445556677777653
No 82
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.2e-25 Score=231.55 Aligned_cols=240 Identities=16% Similarity=0.222 Sum_probs=181.9
Q ss_pred cccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
....+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+......
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------------------- 112 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------------------- 112 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence 45568899999999999997 78999999999999999975311000
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
....++..+.+|...|.+++|+|++ .+++++.|++|++||+++++.+..+.+...|.+++|+| ++.+|++++.
T Consensus 113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence 0012345678999999999999986 46799999999999999998887777888999999999 9999999999
Q ss_pred CCcEEEEeCCCCcEEE-eeccCCCeEE-----EEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccccCC
Q 006424 349 DGKVRIWGVCEKRVVD-WADVRDVISA-----ICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~-~~~~~~~v~~-----l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
|+.|++||+++++... +..|.+.+.+ ..|++++.++++++.++ .|++||++....+......... .
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~ 263 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----S 263 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----c
Confidence 9999999999987654 5667665433 33568889999887764 7999999965444443333321 1
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK 474 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~ 474 (645)
+.+...-..++| .++++|+.|+.|++|++... ...+....+..++.+++|.|...
T Consensus 264 ~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 264 APLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 233333334445 88999999999999998643 33333344667888999999653
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=211.31 Aligned_cols=317 Identities=12% Similarity=0.090 Sum_probs=228.3
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-----
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----- 361 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~----- 361 (645)
..|.|++|.++|.+++|..+|.|.||+..+.+..+.. .|.+.|.+++... +| .|++|+.|+.|..||-.-.+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEecccccccccccc
Confidence 6799999999999999999999999999877765544 6999999999987 66 45669999999999832111
Q ss_pred ------------------------------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424 362 ------------------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 362 ------------------------------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
.....+|.+....++.+|+...+++++.|+.+++|+ ..+...
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 112355667788899999999999999999999999 333222
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
. ..+ ..++.|+.|+|.| .++.|+..|...+.|..+ ......+....+++.+.|+|+|.+||.|+.|+.|
T Consensus 403 t-~~~-------~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 403 T-KII-------EDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred E-EEe-------cCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeE
Confidence 2 112 2678999999997 899999999999999876 3444454468899999999999999999999999
Q ss_pred EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCc--------------
Q 006424 486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW-------------- 551 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~-------------- 551 (645)
+||.++...... ......+...++.+.|++|+.++.+-+.| +.+..|........
T Consensus 472 yiy~Vs~~g~~y--------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d---~eiLyW~~~~~~~~ts~kDvkW~t~~c~ 540 (626)
T KOG2106|consen 472 YIYRVSANGRKY--------SRVGKCSGSPITHLDWSSDSQFLVSNSGD---YEILYWKPSECKQITSVKDVKWATYTCT 540 (626)
T ss_pred EEEEECCCCcEE--------EEeeeecCceeEEeeecCCCceEEeccCc---eEEEEEccccCcccceecceeeeeeEEE
Confidence 999998653211 11111223668899999999988865544 44445533211111
Q ss_pred ------cCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEE
Q 006424 552 ------IRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIV 625 (645)
Q Consensus 552 ------~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iv 625 (645)
-..++..+..++-|.+.+++++++. .|+|+++.-+-.. ...+-.+...|......++|...|..+|.
T Consensus 541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd-~g~v~lf~yPc~s------~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 541 LGFEVFGGSDGTDINAVARSHCEKLLASGDD-FGKVHLFSYPCSS------PRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred EEEEEecccCCchHHHhhhhhhhhhhhcccc-CceEEEEccccCC------CcccceeeccccceeEEEEEeeCCceEEe
Confidence 1122334555677788889999988 8999999876541 01112222333333334667676666555
Q ss_pred EecCCCeEeEEEe
Q 006424 626 TAGCDGMIKTFHN 638 (645)
Q Consensus 626 t~s~Dg~Iriw~~ 638 (645)
|| .|..|..|++
T Consensus 614 tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 614 TG-KDTSIMQWRL 625 (626)
T ss_pred cC-CCceEEEEEe
Confidence 55 9999999985
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.3e-26 Score=217.50 Aligned_cols=308 Identities=22% Similarity=0.317 Sum_probs=229.4
Q ss_pred hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424 96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM 175 (645)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (645)
+..+..|+..+..++++++..+ .-++++ ++++.+|--..-+..+..++. + .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask------------~g~i~kw~v~tgk~~~~i~~~--------------~-ev 186 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASK------------DGTILKWDVLTGKKDRYIIER--------------D-EV 186 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCC------------CcceeeeehhcCccccccccc--------------c-hh
Confidence 4456678888899999999877 666776 666666622111111111000 0 00
Q ss_pred HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424 176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 255 (645)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (645)
... .+..+...+ ++|...|.+++.|+||+|||+|+.|..|.||+..+
T Consensus 187 --~k~-----~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t------------------------ 233 (479)
T KOG0299|consen 187 --LKS-----HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT------------------------ 233 (479)
T ss_pred --hhh-----ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc------------------------
Confidence 000 011111111 38999999999999999999999999999999997
Q ss_pred ecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEE
Q 006424 256 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCV 333 (645)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l 333 (645)
...++.+.+|.+.|.+++|-.. +.+++++.|++|++|+++....+.++ +|.+.|..+
T Consensus 234 ---------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 234 ---------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred ---------------------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 5667889999999999999865 48999999999999999887776654 799999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 334 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 334 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
.... -++.+-+|+.|+++++|++.....+.+.++.+.+-|++|-. ...+++|+.+|.|.+|++...+.....-..|+.
T Consensus 293 daL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred chhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 8876 66677777799999999998888888889999999999974 568999999999999999877655443333332
Q ss_pred ccc-----CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEE-eCCcc
Q 006424 414 KKT-----SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCR 484 (645)
Q Consensus 414 ~~~-----~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~-s~dg~ 484 (645)
... +...|++++..|.. .++++|+.+|.|++|-+.+. +..+....-.+.|++++|+++|+.+++| +....
T Consensus 371 ~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred cCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccc
Confidence 211 12489999999985 89999999999999997754 3444444467889999999999976665 34444
Q ss_pred EEEE
Q 006424 485 VYVW 488 (645)
Q Consensus 485 I~iw 488 (645)
+=-|
T Consensus 450 lGRW 453 (479)
T KOG0299|consen 450 LGRW 453 (479)
T ss_pred ccee
Confidence 4344
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.8e-25 Score=210.78 Aligned_cols=272 Identities=18% Similarity=0.279 Sum_probs=222.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|+++...|..+.++||+.|..+.++|... ++.+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~l 254 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQIL 254 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhhh
Confidence 4688999988878999999999999999886 6678
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
..+.||...|+.+.|+++. .+++++.|..|+||........... .|..+|+.+..+| .+.||++++.|++..+.|++
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEcc
Confidence 8999999999999999986 8899999999999998766554444 4999999999999 99999999999999999999
Q ss_pred CCcEEEeeccC---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 359 EKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 359 ~~~~~~~~~~~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
++..+....+. -.+++..|+|||..|.+|+.||.+++||+....... ....|.++|..++|+.+| ++|+
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~La 405 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWLA 405 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEEE
Confidence 99988765553 358999999999999999999999999999776322 223357999999999998 9999
Q ss_pred EEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee-c
Q 006424 436 ITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-S 512 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~ 512 (645)
+++.|+.|++||++.. ..++... ....+.+++|++.|.+|+.++.|=.|++++-.+.. +.. ...++ +
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~--W~~-------~~~~~~~ 475 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS--WTE-------IKELADH 475 (506)
T ss_pred EEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccccc--cee-------eehhhhc
Confidence 9999999999999854 3444443 23379999999999999999888777777644331 111 11111 2
Q ss_pred CCcEEEEecCCCCccccccCCCCc
Q 006424 513 EGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 513 ~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.|....+.|.....++++.+.|..
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred ccccceeeecccceEEeeccchhh
Confidence 367788888888888887776644
No 86
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.5e-25 Score=224.26 Aligned_cols=433 Identities=17% Similarity=0.209 Sum_probs=291.3
Q ss_pred cccccccccCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeEecCC-----------CCc-ccCCCCceEEe
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDD-----------GGF-GSNAKEGKIKF 256 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~ 256 (645)
...++.||.++|+|+.|-|+.+ ++++|+.||.|++|.++.....+...... ... ...+..+.+..
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence 5567899999999999999877 89999999999999998322211111110 000 00012222222
Q ss_pred cccCCCc------------------------------------ceeecCCCceeccCCCceeeccCccCeEEEEEcCC--
Q 006424 257 GKKKSSH------------------------------------VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-- 298 (645)
Q Consensus 257 ~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-- 298 (645)
+...+.. ..+...... .-....+..+.||.+.|.+++|...
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCC
Confidence 2221111 000000000 0012456788999999999999742
Q ss_pred -C-eEEEEeCCCcEEEEecCCCe---------------------EE---E--------EecCCCcEEEEEEeeCCCCEEE
Q 006424 299 -N-YLLSCSMDKTVRMWQVGCNQ---------------------CL---N--------VFDHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 299 -~-~l~s~s~dg~I~iwd~~~~~---------------------~~---~--------~~~~~~~v~~l~~~p~~~~~l~ 344 (645)
. +|+|+|.|..|+||.+.-+. .. . ..+|.++|+++.|+| .+..|+
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LL 283 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLL 283 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhhe
Confidence 3 79999999999999863221 11 1 015999999999999 888899
Q ss_pred EEeCCCcEEEEeCCCCc-----EEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 345 SGSIDGKVRIWGVCEKR-----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~-----~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
+++.|.++.+|...+.. .++ ..+.........|+|+++.+++-+..|..++|...... .........+
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSG 359 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISG 359 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeecccccc
Confidence 99999999999876542 112 22334558889999999999999999999999833222 1222333445
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
|...|.++.|+|.| .+|++.+.|-+-|++-.. +....-+...|...+++++|-+..-.+++|.+...+++|+...
T Consensus 360 H~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 360 HVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 67899999999998 799999999999998643 1112222344777899999988667788888899999998532
Q ss_pred C-----------C------------cC--------CC----c---c----cC---Ccce---------------------
Q 006424 493 L-----------C------------FP--------SS----K---Q----KN---SVRS--------------------- 506 (645)
Q Consensus 493 ~-----------~------------~~--------~~----~---~----~~---~~~~--------------------- 506 (645)
. + .+ .. . . .. ....
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 0 0 00 00 0 0 00 0000
Q ss_pred eeeeecCCcEEEEecCCCCccccccCCCCcccc--Ccccccccc--CCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424 507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC--SQKWDNLET--APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 582 (645)
Q Consensus 507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~--~~~w~~~~~--~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~ 582 (645)
...+.|...+.+++-+|++..+++++....... +.+|....- ...+.+|+--++.++|||||++|++++. |++..
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~s 597 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVS 597 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEE
Confidence 011334556889999999999998888766544 455655222 2257888889999999999999999999 99999
Q ss_pred CCCCccCCCCCcCChhhhHhhhhhccCCCCC---ccCC-CCcceEEEEecCCCeEeEEEecCcc
Q 006424 583 LWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV---RAIS-ATWGLVIVTAGCDGMIKTFHNYGLP 642 (645)
Q Consensus 583 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~d~~~ivt~s~Dg~Iriw~~~g~~ 642 (645)
+|+...... ....+.....|. .+++ .+|+..+||||+|.+|++|.....|
T Consensus 598 l~~~~~~~~----------~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 598 LYEVQEDIK----------DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eeeeecccc----------hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999876631 222233333443 3332 4478889999999999999977654
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.9e-25 Score=235.60 Aligned_cols=295 Identities=20% Similarity=0.250 Sum_probs=224.8
Q ss_pred cccCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 198 AHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
.+...|.++..+|||..+|||+ .||.++||+.+...... ..++.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~ 56 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNE 56 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhc
Confidence 4556799999999999999999 89999999976521000 00000
Q ss_pred -cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC------------------CeEEEEe-cCCCcEEEEE
Q 006424 276 -EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQ 334 (645)
Q Consensus 276 -~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~------------------~~~~~~~-~~~~~v~~l~ 334 (645)
-.+.+.....|.+.|+|+.|++|| +||+||.|+.|.||.... .+++..+ +|...|..++
T Consensus 57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 57 NLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred ccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 145567778899999999999998 999999999999998762 1233344 5999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
|+| ++.++++++.|++|.+|+.++.+... +.+|.+.|..+.|.|-|++||+-+.|++|++|.+.+...... +.-+-.
T Consensus 137 Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~pf~ 214 (942)
T KOG0973|consen 137 WSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITKPFE 214 (942)
T ss_pred cCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-eccchh
Confidence 999 99999999999999999999876554 789999999999999999999999999999999776443322 222222
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEECCcceeeEeecCCCCCeEEEEEecC-----CC----------
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK---------- 474 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-----~~---------- 474 (645)
.......+..+.|+||| .+|++... -.++.|.+-.+........+|.+++.++.|+|. .+
T Consensus 215 ~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 22234668899999998 78887633 357888886655545555668999999999882 11
Q ss_pred --EEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424 475 --HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD 538 (645)
Q Consensus 475 --~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~ 538 (645)
.+|+||.|++|.||...........+.- .+..++.++|+|||..|+.++-|+...
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l---------f~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNL---------FNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhh---------hcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 6789999999999998655332222111 234578999999999999887776533
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=204.55 Aligned_cols=278 Identities=17% Similarity=0.288 Sum_probs=224.3
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+.+.+.|.||.+.|+.++-......+.+++.|.+.+||.+++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es------------------------------------- 179 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES------------------------------------- 179 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence 4567788999999999999988788999999999999999998
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec------CC------------------------
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC------------------------ 317 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~------~~------------------------ 317 (645)
+.++..+.||.+.|+++.|++.+ ++++++.|++..||.. ..
T Consensus 180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 56678899999999999999988 7889999999999961 10
Q ss_pred ------C----eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEE
Q 006424 318 ------N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI 385 (645)
Q Consensus 318 ------~----~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~ 385 (645)
+ .++..+ +|...|.+..|.. .++.+++++.|.+..+||+++++++. +.+|....+.++-+|..++++
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence 0 112222 4888899999998 89999999999999999999999887 678999999999999999999
Q ss_pred EEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeE
Q 006424 386 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 465 (645)
Q Consensus 386 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~ 465 (645)
+++.|.+.++||++..-..... ++ +|...|+++.|..+ ..+++|+.|.+|++||+++....+.......+++
T Consensus 331 TsSrDtTFRLWDFReaI~sV~V--FQ----GHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQSVAV--FQ----GHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred EeccCceeEeccchhhcceeee--ec----ccccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 9999999999999944332222 23 34689999999998 4899999999999999886655554444677899
Q ss_pred EEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424 466 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 526 (645)
Q Consensus 466 ~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~ 526 (645)
.++.+..++.|+.--++..|++||++........... .-.+...+...+|..+..
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts------RqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTS------RQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCccccCCccc------ccccceeeeeeeccccCc
Confidence 9999988889999999999999999876432221110 111234466778876544
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=224.07 Aligned_cols=247 Identities=20% Similarity=0.399 Sum_probs=202.5
Q ss_pred ccCcEE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 199 HKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 199 H~~~V~---~l~fs-pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
|...|. .+..+ |.++||.|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444454 44554 467799999999999999987521000
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEec-CCCcEEEEEE-eeCCCCEEEEEeCC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSID 349 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~v~~l~~-~p~~~~~l~s~s~d 349 (645)
.......++.|...|+++....++ .|+++|.|-+|++|+...+ -+..+++ |.+.|.|+++ .+ +...+|+|+.|
T Consensus 62 -s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD 139 (735)
T KOG0308|consen 62 -STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLD 139 (735)
T ss_pred -ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCC
Confidence 012356788899999999988777 8999999999999999876 4566665 9999999999 55 88899999999
Q ss_pred CcEEEEeCCCCcE--E---------Eee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 350 GKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 350 g~i~vwd~~~~~~--~---------~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
+.|.+||+.++.. + .+. ++...|++++.++.|..++.|+..+.+++||.++...... +. +|
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---Lr----GH 212 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LR----GH 212 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---ee----cc
Confidence 9999999997622 1 122 6788999999999999999999999999999998775433 23 34
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...|..+..++|| ..+++++.||+|++||++..........|...|.++..+|+-.++++|+.||.|+.=|+.+.
T Consensus 213 TdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 213 TDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 6889999999998 89999999999999999866555556668888999999999999999999999999999875
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.9e-25 Score=210.68 Aligned_cols=251 Identities=18% Similarity=0.284 Sum_probs=213.1
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.+......+|+||...|+.+.|+|+...+++++.|..|+||....
T Consensus 248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~----------------------------------- 292 (506)
T KOG0289|consen 248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL----------------------------------- 292 (506)
T ss_pred cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-----------------------------------
Confidence 345567888999999999999999999999999999999999875
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC---CcEEEEEEeeCCCCE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNY 342 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~~p~~~~~ 342 (645)
.........|.++|+.+..+|.| ||++++.|++..+.|++++..+....+. -.+++.+|+| ||.+
T Consensus 293 ----------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLi 361 (506)
T KOG0289|consen 293 ----------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLI 361 (506)
T ss_pred ----------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceE
Confidence 23345667899999999999998 9999999999999999999998877654 3589999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 343 FISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
|.+|..||.|++||+.++.. -.+.+|.++|.+++|+.+|.+|++++.|+.|++||++.... ...+..... ..+
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v 435 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEV 435 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccc
Confidence 99999999999999988664 45889999999999999999999999999999999997653 334444332 479
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
.++.|.+.| .+|+.++.|=+|++++-. +.........|.+..+++.|....++++++|.|..++++.+
T Consensus 436 ~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 436 NSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999998 899999888888888732 33333444557788999999999999999999999888764
No 91
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.4e-24 Score=214.51 Aligned_cols=250 Identities=15% Similarity=0.256 Sum_probs=202.8
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.--..+|++|+|+.+.+.||.+-.||.|-||++...
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-------------------------------------------- 57 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-------------------------------------------- 57 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------------
Confidence 334578999999999999999999999999999872
Q ss_pred CCCceeeccC-ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 277 ESPLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 277 ~~~~~~l~~h-~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
.-....+.|+ ...|-+++|++.++|++.+.+|.|.-||+.+++....+. ..+.|++++.+| .+..++.|+.||.++.
T Consensus 58 w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYD 136 (691)
T ss_pred ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEE
Confidence 2234455555 468999999988899999999999999999999988886 667999999999 8899999999998888
Q ss_pred EeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCC
Q 006424 355 WGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 355 wd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
++...+.+.. +....+.+.+++|+|++..++.|+.||.|++||......... ...+.........-|.++.|-.++
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 8887777654 344568899999999999999999999999999987765431 111222222233557788888775
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+++|...|.|.+||.......-....|...|.+++.++++.+++++|.|+.|.-|...+.
T Consensus 217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred --cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8999999999999997643333333348889999999999999999999999998887765
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.1e-25 Score=236.70 Aligned_cols=267 Identities=23% Similarity=0.391 Sum_probs=204.1
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
+.-++..|.+.|+|+.|+|||+|||+||+|+.|.||..... .....+. ........
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fg------s~g~~~~v----------------- 116 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFG------STGGAKNV----------------- 116 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCccccc------cccccccc-----------------
Confidence 34556789999999999999999999999999999998741 0000000 00000000
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
-..+.+..+.+|...|.+++|+|++ +|++++.|++|.+||..+.+.+..+. |.+.|..+.|.| -|++|++-+.|
T Consensus 117 ---E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdD 192 (942)
T KOG0973|consen 117 ---ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDD 192 (942)
T ss_pred ---ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCC
Confidence 0135677889999999999999987 99999999999999999998888885 999999999999 99999999999
Q ss_pred CcEEEEeCCCCcEEE-e------eccCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 350 GKVRIWGVCEKRVVD-W------ADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 350 g~i~vwd~~~~~~~~-~------~~~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
++|++|++.+-.+.. + ......+..+.|+|||++|++... ...+.|.+-.+...... +.+ |.
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~---LvG----H~ 265 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD---LVG----HS 265 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee---eec----CC
Confidence 999999976633322 1 123446888999999999998642 23566776655443322 233 45
Q ss_pred CCeEEEEEcCC--------CC--------cEEEEEECCCeEEEEECCcceeeEeec-CCCCCeEEEEEecCCCEEEEEeC
Q 006424 419 NKITGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 419 ~~i~~i~~s~~--------g~--------~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
.++.++.|+|. |. ..+|+|+.|++|-||........+..+ -....|..++|+|||..|+.+|.
T Consensus 266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 79999999983 11 168899999999999976544444332 24668999999999999999999
Q ss_pred CccEEEEeCCCC
Q 006424 482 DCRVYVWNYDEL 493 (645)
Q Consensus 482 dg~I~iwd~~~~ 493 (645)
||+|.+..++..
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998764
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.1e-25 Score=215.29 Aligned_cols=255 Identities=20% Similarity=0.334 Sum_probs=204.8
Q ss_pred cccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 198 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
-|.+.|+.+.+-|... .+|+++..+.|.|||............ +
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------------------------~ 166 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------------------------E 166 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------------------------c
Confidence 4999999999999654 778888999999999876321110000 1
Q ss_pred CCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE-------EEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+-..+.||...-++++|++. +.|++++.|++|++||+..... ...+ +|...|..++|+|.+.++|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 3455688899998999999975 5999999999999999964322 2223 4999999999999889999999
Q ss_pred eCCCcEEEEeCCCC--cE-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 347 SIDGKVRIWGVCEK--RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 347 s~dg~i~vwd~~~~--~~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+.|+.+.|||+|++ +. .....|...++|++|+| ++..||+|+.|++|.+||+++...+...+. .|...|.
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------~H~dev~ 320 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------GHEDEVF 320 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc------CCCcceE
Confidence 99999999999953 22 33677899999999999 566889999999999999998876544332 3458999
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcce--------------eeEeecCCCCCeEEEEEecCCCE-EEEEeCCccEEE
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVI--------------HKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV 487 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--------------~~~~~~~~~~~i~~v~~sp~~~~-l~t~s~dg~I~i 487 (645)
++.|+|.....|++++.|+.+.|||+...- ..|...+|...|..+.|+|+..+ |++.++|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 999999988899999999999999965321 22555668999999999998765 667889999999
Q ss_pred EeCCCC
Q 006424 488 WNYDEL 493 (645)
Q Consensus 488 wd~~~~ 493 (645)
|.+...
T Consensus 401 W~~s~~ 406 (422)
T KOG0264|consen 401 WQMAEN 406 (422)
T ss_pred eecccc
Confidence 998754
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-25 Score=223.47 Aligned_cols=240 Identities=22% Similarity=0.363 Sum_probs=202.6
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
+...|+++.|+++|.+||.|..+|.|.|||..+ .+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k 250 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK 250 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence 478999999999999999999999999999986 45
Q ss_pred Cceeecc-CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE-e-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 279 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 279 ~~~~l~~-h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~-~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.+..+.+ |...|-+++|. ...+.+|+.|+.|..+|++..+.... + .|...|..++|++ +++++|+|+.|+.+.||
T Consensus 251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW 328 (484)
T ss_pred ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence 5667777 99999999998 45889999999999999987766544 4 4899999999999 99999999999999999
Q ss_pred eCCC-CcEEEeeccCCCeEEEEEcc-CCCEEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 356 GVCE-KRVVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 356 d~~~-~~~~~~~~~~~~v~~l~~sp-~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
|... .....+..|...|.+++|+| ....||+| +.|+.|++||..++..... + . .+..|.++.|++...
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-v--d-----tgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-V--D-----TGSQVCSLIWSKKYK 400 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-c--c-----cCCceeeEEEcCCCC
Confidence 9965 44567899999999999999 55678875 5699999999997765322 1 1 147899999999974
Q ss_pred cEEEE-EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 432 QRIMI-TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 432 ~~l~~-~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.++.+ |..++.|.||+............|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 44444 344689999998766555555669999999999999999999999999999998764
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=205.93 Aligned_cols=282 Identities=17% Similarity=0.300 Sum_probs=212.1
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC---CCCceEEecc--cCCCccee
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---AKEGKIKFGK--KKSSHVPV 266 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~ 266 (645)
+..++.||.+.|+|+.|++.+.++++++.|++..||...-.-.......+.+..... ..+....+.. .....-.
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t- 260 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT- 260 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce-
Confidence 455688999999999999999999999999999999732111000000000000000 0000000000 0000000
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~ 344 (645)
-..++..+.||.+.|.+..|-..+ .+++++.|.+..+||++++.++..+ +|....+.++-+| ..++++
T Consensus 261 ---------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVv 330 (481)
T KOG0300|consen 261 ---------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVV 330 (481)
T ss_pred ---------eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEE
Confidence 034678899999999999998776 8999999999999999999999988 5889999999999 889999
Q ss_pred EEeCCCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 345 SGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+++.|.+.++||++.. .+-.+.+|.+.|++..|.-+ ..+++|+.|.+|++||+++...++..+... .+++
T Consensus 331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~~N 402 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SPAN 402 (481)
T ss_pred EeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC-------Cccc
Confidence 9999999999999853 23458899999999999865 468899999999999999998887766544 6788
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeE---eecCCCCCeEEEEEecCC--CEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVD-VIHKF---KGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~---~~~~~~~~i~~v~~sp~~--~~l~t~s~dg~I~iwd~~~~ 493 (645)
.++.+..+ ..++.--.+..|++||+.. .+..+ ....|..-|++++|..+- .-|++++-|..+.=|+++..
T Consensus 403 Rvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 403 RVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999876 6888888889999999762 22222 234578889999997543 45889999999999998764
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.5e-25 Score=212.93 Aligned_cols=272 Identities=15% Similarity=0.212 Sum_probs=213.8
Q ss_pred ccCcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspdg~~-L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
..+.|.+++|||...+ +|+++ .-.+.||+..+ .
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~---------------------------------------------~ 58 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT---------------------------------------------R 58 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecch---------------------------------------------h
Confidence 4467999999996553 33333 33599998876 3
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.....+......|.+++|..|| +|++|+..|.|+|+|+.+...+..+ .|..++..+.|+|.++..+++|++|+.+++|
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 4455666778899999999998 7778888999999997765566666 4999999999999888889999999999999
Q ss_pred eCCCCcEE-EeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 356 GVCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 356 d~~~~~~~-~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
|+.+.... .+.+|.+.|.|.+|+|. +..+++|+.||.|++||++........+. |+.+|-++.+-|.| ..
T Consensus 139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-------hg~pVe~vl~lpsg-s~ 210 (487)
T KOG0310|consen 139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-------HGCPVESVLALPSG-SL 210 (487)
T ss_pred EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-------CCCceeeEEEcCCC-CE
Confidence 99998764 58899999999999995 45889999999999999998753333222 35899999999997 56
Q ss_pred EEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeec
Q 006424 434 IMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 512 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 512 (645)
+++++ ...|+|||+....+... ...|...|+|+.+..++..|++||-|+.|++||+.+-+. ...+.-
T Consensus 211 iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv-----------v~s~~~ 278 (487)
T KOG0310|consen 211 IASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV-----------VHSWKY 278 (487)
T ss_pred EEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE-----------EEeeec
Confidence 66665 56899999874433333 344899999999999999999999999999999766521 112334
Q ss_pred CCcEEEEecCCCCccccccCCCCc
Q 006424 513 EGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 513 ~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.++++.++-+|++..++..-++++
T Consensus 279 ~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 279 PGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred ccceeeEEecCCCceEEEecccce
Confidence 577888888888887776555544
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=9e-25 Score=229.67 Aligned_cols=246 Identities=22% Similarity=0.390 Sum_probs=204.0
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.+...+...|.||.+.|++++|..-+.+|++|+.|+++++||..+
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s----------------------------------- 280 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST----------------------------------- 280 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-----------------------------------
Confidence 344545555999999999999987788999999999999999887
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s 345 (645)
+.....+.||.+.|.++...+ ..+++|+.|.+|++|++.++.++..+. |..+|+++.. ++.++++
T Consensus 281 ----------g~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~lvs 346 (537)
T KOG0274|consen 281 ----------GECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPLLVS 346 (537)
T ss_pred ----------CcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCEEEE
Confidence 566789999999999998653 478889999999999999999999998 9999999999 5789999
Q ss_pred EeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccccccCCCCeEE
Q 006424 346 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
|+.|++|++||+.+++++. +.+|...|.++.+.+. ..+++|+.|+.|++||+++. +... ....|...+.+
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~-------tl~~h~~~v~~ 418 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH-------TLQGHTSLVSS 418 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh-------hhcCCcccccc
Confidence 9999999999999988776 7889999999988765 89999999999999999988 3321 12223455555
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecC-CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+.+. + ++|++++.|++|++||..+......... +.+.|..+++. ...+++++.||.+++||++++.
T Consensus 419 l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 419 LLLR--D-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cccc--c-ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 5543 3 6899999999999999775443333333 56788888775 5788899999999999999884
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-25 Score=198.16 Aligned_cols=249 Identities=21% Similarity=0.338 Sum_probs=200.4
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
-..|.+.|..+...--|+.|||++.|++|+|+.+.+...
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------------------------- 45 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------------------------- 45 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence 357999999999888899999999999999999987311
Q ss_pred cCCCceeeccCccCeEEEEEcC-C-C-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCC-CCEEEEEeC
Q 006424 276 EESPLQELHGHKGDVLDLAWSN-S-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI 348 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~-~-~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~-~~~l~s~s~ 348 (645)
.+.+.+|.||.++|+.++|.. . | .|++|++||.|.||.-+.++-.+.. .|...|++++|.|.+ +-.|++++.
T Consensus 46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence 256789999999999999974 3 4 8999999999999999888654444 388999999999943 346899999
Q ss_pred CCcEEEEeCCCC-c---EEEeeccCCCeEEEEEccC---C-----------CEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 349 DGKVRIWGVCEK-R---VVDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 349 dg~i~vwd~~~~-~---~~~~~~~~~~v~~l~~sp~---g-----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
||.|.|.+.+.. . ......|.-.|++++|.|. | +.|++|+.|..|+||+........+
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e---- 200 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE---- 200 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh----
Confidence 999999998764 2 2225678889999999995 4 6799999999999999988754332
Q ss_pred ccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcceeeE---eecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 411 HDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKF---KGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
.....|.+.|+.++|.|.- ...++++++||+|.||..+...... ..+.....+..+.||+.|+.|+.++.|..
T Consensus 201 -~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 201 -RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred -hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 2244567899999999963 3689999999999999865221111 12235668999999999999999999999
Q ss_pred EEEEeCC
Q 006424 485 VYVWNYD 491 (645)
Q Consensus 485 I~iwd~~ 491 (645)
|.+|.-+
T Consensus 280 vtlwke~ 286 (299)
T KOG1332|consen 280 VTLWKEN 286 (299)
T ss_pred EEEEEeC
Confidence 9999744
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.3e-26 Score=209.81 Aligned_cols=242 Identities=23% Similarity=0.383 Sum_probs=203.8
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
|--|.++|.|+.||.|...||+|+.||.|++|.+.+
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-------------------------------------------- 294 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-------------------------------------------- 294 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEec--------------------------------------------
Confidence 445889999999999999999999999999999998
Q ss_pred cCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 276 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 276 ~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
+.+++.+. .|+..|+|+.|+.|+ .+++++.|.++++.-+.+|++++.|. |.+.|+...|.+ +|+.+++++.||+|
T Consensus 295 -G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 295 -GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV 372 (508)
T ss_pred -chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence 44566665 899999999999887 89999999999999999999999985 999999999999 99999999999999
Q ss_pred EEEeCCCCcEEEe---eccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 353 RIWGVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 353 ~vwd~~~~~~~~~---~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
++|+..+.++... .+...+|+++..-|. -..++++...+++++.++.+.-... +.... ..++...+...+|
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs----fsSGk-REgGdFi~~~lSp 447 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS----FSSGK-REGGDFINAILSP 447 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee----eccCC-ccCCceEEEEecC
Confidence 9999999887753 345567888888784 4588999999999999987653322 11111 1245667778999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
.| .++++.++|+.++.+........-....|...+.+++-+|..+.||+-++||.+++|.
T Consensus 448 kG-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KG-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CC-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98 8999999999999999764433333344888899999999999999999999999994
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=184.82 Aligned_cols=248 Identities=21% Similarity=0.367 Sum_probs=199.7
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+.-+.|.+.|.|.+|||+|++||+|+.|++|++.......+..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~------------------------------------- 125 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA------------------------------------- 125 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc-------------------------------------
Confidence 3456799999999999999999999999999998766522111
Q ss_pred eccCCCceeeccCccCeEEEEEcCC----C-eEEEEe-CCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNS----N-YLLSCS-MDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~----~-~l~s~s-~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...-..+.-|.+.|..++|..+ + .|++++ .|..|++-|...|+....+ +|.+.|.++- +- ++-++++|
T Consensus 126 ---~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sg 200 (350)
T KOG0641|consen 126 ---TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASG 200 (350)
T ss_pred ---cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEcc
Confidence 1223466779999999999632 3 566554 4677888899999988887 4888888763 22 68899999
Q ss_pred eCCCcEEEEeCCCCcEEEeecc--------CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 347 SIDGKVRIWGVCEKRVVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~--------~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
+.|.+|++||++-..++...+. .+.|.+++..|.|++|++|-.|..+.+||++++..... ++ .|.
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~---f~----phs 273 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR---FH----PHS 273 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee---eC----CCc
Confidence 9999999999998887764321 25799999999999999999999999999999876433 22 245
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECC----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
..|.|+.|+|.. .++++++.|..|++-|+. ..........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 274 adir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 274 ADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 889999999986 899999999999999976 233344445688899999999999999999999999999875
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=7.2e-24 Score=222.89 Aligned_cols=240 Identities=19% Similarity=0.346 Sum_probs=202.2
Q ss_pred cccc-ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~-H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+.+ |...|.+..|+ +.++++++.|++|++||..+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~------------------------------------------ 237 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN------------------------------------------ 237 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeeccc------------------------------------------
Confidence 3443 66789999998 55899999999999999987
Q ss_pred eccCCCcee-eccCccCeEEEEEcC-CCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~-l~~h~~~V~~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
+..+.. +.||.+.|+++++.. +++|++|+.|.++++||..+|++...+. |.+.|.++.. .+..+++|+.|.
T Consensus 238 ---~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~ 311 (537)
T KOG0274|consen 238 ---GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDN 311 (537)
T ss_pred ---ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCc
Confidence 333444 899999999999976 4599999999999999999999999996 9999999988 457889999999
Q ss_pred cEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
+|++|++.++..+.+.. |..+|+++..+ +.++++|+.||+|.+||+.+.+.... ...|...|.++.+.+.
T Consensus 312 tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~ 382 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE 382 (537)
T ss_pred eEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc
Confidence 99999999999988776 99999999987 88999999999999999996665322 2235689999988875
Q ss_pred CCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
..+++|+.|+.|++||++.. ........|...+..+.+ .+++|++++.|++|++||..+++...
T Consensus 383 --~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 383 --NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred --ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceee
Confidence 58999999999999998866 444555557777766554 68899999999999999999886443
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-24 Score=219.92 Aligned_cols=276 Identities=19% Similarity=0.297 Sum_probs=214.8
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec
Q 006424 290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD 367 (645)
Q Consensus 290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~ 367 (645)
..-+.|+..+.|+.|. ...|++|+..++........ ...|+++.|++ +|.+|++|..+|.|.|||....+... +..
T Consensus 180 ~nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccC
Confidence 3446777666555554 46899999999987766653 88999999999 99999999999999999987755444 555
Q ss_pred -cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 368 -VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 368 -~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
|...|.+++|+ +..+.+|+.+|.|..+|++........ ...|...|..+.|++++ .++++|+.|+.+.||
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIW 328 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCC-CeeccCCCccceEec
Confidence 89999999998 678999999999999999977654331 33356889999999998 899999999999999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 523 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~ 523 (645)
|.......+....|...|..++|+|- ...||+|+ .|++|++||..++..... ....+.+..+.|++
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----------vdtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----------VDTGSQVCSLIWSK 397 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----------cccCCceeeEEEcC
Confidence 98766666777779999999999994 67888875 699999999997743222 12245678888988
Q ss_pred CCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhh
Q 006424 524 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 603 (645)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~ 603 (645)
....+++..+ .++..|.+|+.++. ...
T Consensus 398 ~~kEi~sthG------------------------------------------~s~n~i~lw~~ps~-----------~~~ 424 (484)
T KOG0305|consen 398 KYKELLSTHG------------------------------------------YSENQITLWKYPSM-----------KLV 424 (484)
T ss_pred CCCEEEEecC------------------------------------------CCCCcEEEEecccc-----------cee
Confidence 8866664333 11446888988776 223
Q ss_pred hhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecCc
Q 006424 604 QQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGL 641 (645)
Q Consensus 604 ~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g~ 641 (645)
.....|...+ .+.+| ||..||||+.|.++|+|+.|+.
T Consensus 425 ~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 3344444444 34445 8999999999999999999983
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=209.35 Aligned_cols=285 Identities=15% Similarity=0.205 Sum_probs=209.9
Q ss_pred CceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.+..+.||.+.|.|++=+|.. .++||+.||.|++||+.+..+...+. |.+.|..+++. ...+++++.|.+|+.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQW 134 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeee
Confidence 356778999999999999975 79999999999999999999999986 88899999996 3678899999999999
Q ss_pred eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
.+... ..........+..+.-+..+..+++++. .|.|||..-... ....... ...|.++.|+|-....|+
T Consensus 135 k~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P-v~smswG------~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 135 KIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP-VSSMSWG------ADSISSVKFNPVETSILA 204 (433)
T ss_pred eccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCc-cceeecC------CCceeEEecCCCcchhee
Confidence 98775 4444445566777777667777877764 589999975543 3333332 267999999999878889
Q ss_pred EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCc
Q 006424 436 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 515 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 515 (645)
++..|+.|.+||+++....-+.. -...-+.++|+|.+--+++|++|..++.||+.....+...+..
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d------------- 270 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD------------- 270 (433)
T ss_pred eeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-------------
Confidence 99999999999988533222211 2345578999998888899999999999999877444333222
Q ss_pred EEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcC
Q 006424 516 SVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQ 595 (645)
Q Consensus 516 ~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~ 595 (645)
|.+-+.++.|||-|+-++|++. |.+|+|+....+.+.
T Consensus 271 ---------------------------------------hvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~SR--- 307 (433)
T KOG0268|consen 271 ---------------------------------------HVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGHSR--- 307 (433)
T ss_pred ---------------------------------------cceeEEEeccCCCcchhccccc-cceEEEeecCCCcch---
Confidence 2223344456666666777888 899999988776311
Q ss_pred ChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 596 DPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
.....-.-.....+.++. |.++|++||+||.||+|+.+
T Consensus 308 -----diYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 308 -----DIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -----hhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecc
Confidence 111111112222234444 89999999999999999965
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-25 Score=228.37 Aligned_cols=287 Identities=18% Similarity=0.270 Sum_probs=208.4
Q ss_pred chhhhhh-cccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHH-----hhcc---cchhhccccCC
Q 006424 94 CMVDELE-QDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIIS-----MKKR---NVETCMSEKRK 164 (645)
Q Consensus 94 ~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~ 164 (645)
.+.+.+. .|...||...|++++.+ ++++.+ |+-++.|- +++ +... .++..+.....
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGe------------D~virVWk--Vie~e~~~~~~~~~~~~~~~~~~~s~ 321 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKY-LASAGE------------DGVIRVWK--VIESERMRVAEGDSSCMYFEYNANSQ 321 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCce-eeecCC------------CceEEEEE--Eeccchhcccccccchhhhhhhhccc
Confidence 3566777 89999999999999999 999998 88888882 221 1111 01111111111
Q ss_pred CCCCCCcc-----chhHhhhccccc-------ccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 006424 165 PNSEKPKA-----NKMEVKQNKKKC-------MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 232 (645)
Q Consensus 165 ~~~~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~ 232 (645)
........ ............ .-.....+.+.|.||.+.|..+.||.++ +|+++|.|++|++|++..
T Consensus 322 ~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~- 399 (712)
T KOG0283|consen 322 IEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR- 399 (712)
T ss_pred cCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-
Confidence 00000000 000000000000 0012234567899999999999999765 999999999999999986
Q ss_pred ceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcE
Q 006424 233 AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTV 310 (645)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I 310 (645)
..++..|. |...|+|++|+|- +++++|+-||.|
T Consensus 400 --------------------------------------------~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 400 --------------------------------------------KECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred --------------------------------------------cceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 34456665 9999999999984 499999999999
Q ss_pred EEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe---ecc------CCCeEEEEEccCC
Q 006424 311 RMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW---ADV------RDVISAICYIPDG 381 (645)
Q Consensus 311 ~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~------~~~v~~l~~sp~g 381 (645)
+||++...+.+.-.....-|++++|.| +|+..++|+.+|.+++|+....++..- ..+ ...|+.+.|.|..
T Consensus 435 RiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~ 513 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD 513 (712)
T ss_pred EEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC
Confidence 999999999998888889999999999 999999999999999999988776541 111 2279999999843
Q ss_pred -CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 382 -KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 382 -~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
..+++.+.|..|+|||.+...+....-.++. ...-....|+.|| ++|+++++|..|++|+..
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----TSSQISASFSSDG-KHIVSASEDSWVYIWKND 576 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhhhhhccccc-----CCcceeeeEccCC-CEEEEeecCceEEEEeCC
Confidence 4688899999999999977665443222222 1334567899998 899999999999999975
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.2e-24 Score=213.78 Aligned_cols=375 Identities=15% Similarity=0.163 Sum_probs=254.4
Q ss_pred ccccccCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.+..|..+++|++||++|+|+|+|- ....+++|++..
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~----------------------------------------- 111 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF----------------------------------------- 111 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----------------------------------------
Confidence 3556888999999999999999985 667899999986
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
...+..|..|+..|+|++|+|.+ ++++.+. |-.|.+||.+.+.....-.....|..++|+. ++.|+++++ +
T Consensus 112 ----h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsE-dgSYfvT~g-n 185 (1080)
T KOG1408|consen 112 ----HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSE-DGSYFVTSG-N 185 (1080)
T ss_pred ----ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEcc-CCceeeeee-e
Confidence 33467788899999999999987 7887765 4568889887665555555667788888887 777777776 4
Q ss_pred CcEEEEeCCCCcEE--------------------------------------EeeccC----------------------
Q 006424 350 GKVRIWGVCEKRVV--------------------------------------DWADVR---------------------- 369 (645)
Q Consensus 350 g~i~vwd~~~~~~~--------------------------------------~~~~~~---------------------- 369 (645)
..|++|.+..++.. ...+|-
T Consensus 186 rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnC 265 (1080)
T KOG1408|consen 186 RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANC 265 (1080)
T ss_pred eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccce
Confidence 67788866432200 000000
Q ss_pred -----------------------------------------------------------CCeEEEEEccCCC--------
Q 006424 370 -----------------------------------------------------------DVISAICYIPDGK-------- 382 (645)
Q Consensus 370 -----------------------------------------------------------~~v~~l~~sp~g~-------- 382 (645)
...-++.|++...
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 0011233333322
Q ss_pred ------------------------------------------------EEEEEecCCeEEEEEecCCce--eee------
Q 006424 383 ------------------------------------------------GFIVGSITGTCHFYKASGNDL--KLE------ 406 (645)
Q Consensus 383 ------------------------------------------------~l~~g~~dg~i~iwd~~~~~~--~~~------ 406 (645)
.+.+++.||+|++||+..... ...
T Consensus 346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~ 425 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA 425 (1080)
T ss_pred ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence 245566666666666643100 000
Q ss_pred ---EEeecc-------------------ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe
Q 006424 407 ---KVDFHD-------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ 464 (645)
Q Consensus 407 ---~~~~~~-------------------~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i 464 (645)
.+.+.. ........+.+++.+|+| ++|++|...|.++||++.+.........|...|
T Consensus 426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheeccccee
Confidence 000000 001123468899999998 899999999999999998777666777799999
Q ss_pred EEEEEec---CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC--ccccccCCCCcccc
Q 006424 465 MSASFTT---TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG--TEQKSLCSSSLRDC 539 (645)
Q Consensus 465 ~~v~~sp---~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~--~~l~~~~~~~~~~~ 539 (645)
.++.||. ..++||+++.|.-|+|||+.....+...-.. +...++++.|...| ..+.+++.|...+.
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---------HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---------HSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---------cccceeEEEEeecCCceEEEeccCchhhhe
Confidence 9999985 3578999999999999999876433332111 23446677776555 56666666655443
Q ss_pred CccccccccCCccCCC----CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--
Q 006424 540 SQKWDNLETAPWIRDS----ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV-- 613 (645)
Q Consensus 540 ~~~w~~~~~~~~~~~~----~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 613 (645)
........+..+.+.+ ...++.++.-|..++++++.. |..|+|++++++ +....+....++.
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~sg-----------Kq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIESG-----------KQVKSFKGSRDHEGD 643 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEec-ccceEEEecccc-----------ceeeeecccccCCCc
Confidence 3322222233333333 235677889999999999998 999999999999 4445555555553
Q ss_pred ---ccCCCCcceEEEEecCCCeEeEEEec
Q 006424 614 ---RAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 614 ---~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
+...| -|-+|+|.-.|.++.++|++
T Consensus 644 lIKv~lDP-SgiY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 644 LIKVILDP-SGIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred eEEEEECC-CccEEEEeecCCceEEEEec
Confidence 22335 48999999999999999976
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=210.85 Aligned_cols=244 Identities=16% Similarity=0.196 Sum_probs=181.5
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE----EEEec--CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~----~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
......+.+|+..|.++++.|.| +|++||.|-+|++||+..... .+.+. ....|++++|++ .++.|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 33445778899999999999998 999999999999999864322 22222 455799999999 88888888888
Q ss_pred CcEEEEeCCCCcEEE-------------eeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424 350 GKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 350 g~i~vwd~~~~~~~~-------------~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
...+|+|-...+... ..+|...++|.+|+|+. ..+++++.||++++||+.........+.... ..
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~~ 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-AG 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-CC
Confidence 999999987765543 35677889999999965 4789999999999999987765554443222 22
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----e-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----I-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
...-+++.++|+++| .++|+|+.||.|.+|+.... . ..-..|.....|+++.||+||++|++-|.|+++++||+
T Consensus 315 g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 334678999999998 78999999999999996521 1 12222333448999999999999999999999999999
Q ss_pred CCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424 491 DELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 530 (645)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~ 530 (645)
+..+.++......... -....++|+|+...+++
T Consensus 394 rq~kkpL~~~tgL~t~-------~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTP-------FPGTDCCFSPDDKLILT 426 (641)
T ss_pred cccccchhhhcCCCcc-------CCCCccccCCCceEEEe
Confidence 9876544432221111 11234556666665554
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=215.80 Aligned_cols=335 Identities=16% Similarity=0.163 Sum_probs=246.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
..++.|++....|.+...|..++|||++....... ...
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk------------------------------------------~~s 364 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK------------------------------------------CSS 364 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccc------------------------------------------eee
Confidence 35788999999999999999999999987432211 112
Q ss_pred eccCccCeEEEEE------------cCCCeEEEEeCCCcEEEEecCCC---eEEEE------------------------
Q 006424 283 LHGHKGDVLDLAW------------SNSNYLLSCSMDKTVRMWQVGCN---QCLNV------------------------ 323 (645)
Q Consensus 283 l~~h~~~V~~l~~------------s~~~~l~s~s~dg~I~iwd~~~~---~~~~~------------------------ 323 (645)
+--|...|+.+.- -|.+.+++|+.|++|++||++.+ +..+.
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 2224444444332 24467999999999999998752 11110
Q ss_pred -----------ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEcc---CCCEEEEEe
Q 006424 324 -----------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIP---DGKGFIVGS 388 (645)
Q Consensus 324 -----------~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp---~g~~l~~g~ 388 (645)
++....+++++.+| ++++|++|..-|+++|||+..-+. .....|...|.|+.|+. ..++||+++
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 11234689999999 999999999999999999987554 45778999999999986 357899999
Q ss_pred cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECC--cceeeEeecC---CCC
Q 006424 389 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGV--DVIHKFKGLP---KSG 462 (645)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~---~~~ 462 (645)
.|..|++||...+... .+....|...|+++.|...| ...+++++.|..|.+--.+ .....+..+. ...
T Consensus 524 rdRlIHV~Dv~rny~l------~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDL------VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred CCceEEEEecccccch------hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 9999999999866543 33344556899999998765 3567888888776543322 1122222221 345
Q ss_pred CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcc
Q 006424 463 SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK 542 (645)
Q Consensus 463 ~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~ 542 (645)
.+..|+..|..+++++++.|..|+|||+.+++....... .-.++|...-+...|.|.++++.++|.-... .-
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-------s~~~eG~lIKv~lDPSgiY~atScsdktl~~-~D 669 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-------SRDHEGDLIKVILDPSGIYLATSCSDKTLCF-VD 669 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-------cccCCCceEEEEECCCccEEEEeecCCceEE-EE
Confidence 688999999999999999999999999999853221110 1124678888999999999998888754332 22
Q ss_pred ccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcC
Q 006424 543 WDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQ 595 (645)
Q Consensus 543 w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~ 595 (645)
....+....+.+|+..++++-|++|-++|.|++. ||.|.||.++......|+
T Consensus 670 f~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-DgCIFvW~lp~~mii~m~ 721 (1080)
T KOG1408|consen 670 FVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-DGCIFVWKLPLTMIIRMV 721 (1080)
T ss_pred eccchhhhhhcCcchheeeeeecccchhheeecC-CceEEEEECchhHhHHHH
Confidence 2335666789999999999999999999999998 999999998765433343
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.5e-23 Score=211.50 Aligned_cols=411 Identities=18% Similarity=0.207 Sum_probs=280.0
Q ss_pred ccccccccccccCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
.+.....|.||.+.|.+++|...+. +|||+|.|..||||.+.-+..... ............ ...+...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~-~~~e~~~t~~~~--~~~f~~l------ 250 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS-NEREDSLTTLSN--LPVFMIL------ 250 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc-cccccccccccC--Cceeeee------
Confidence 3456678999999999999987544 899999999999999865331110 000000000000 0000000
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEE--ec----CCCcEEEEEEe
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNV--FD----HHNYVTCVQFN 336 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~--~~----~~~~v~~l~~~ 336 (645)
.-....-..-..+.||++.|+++.|+|.+ .|+++|.|.++.+|...+. --+.. ++ .........|+
T Consensus 251 -----~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 251 -----EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred -----eeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 00000001113455999999999999998 8999999999999987654 22222 22 23457889999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424 337 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 337 p~~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 412 (645)
| +++.+++-+..|..++|...... .....+|-+.|..++|+|.|.++++.+.|.+-++|-.-+.+.. +.-..
T Consensus 326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia 401 (764)
T KOG1063|consen 326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA 401 (764)
T ss_pred C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence 9 89999999999999999844322 2236789999999999999999999999999999877644433 33344
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------------------------ceeeE-----
Q 006424 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------------------------VIHKF----- 455 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------------------------~~~~~----- 455 (645)
+++.|+..++|++|-+.. ..+++|.....+|+|+... ....+
T Consensus 402 RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 556678899999999853 6889999999999995110 00000
Q ss_pred ---------------------------------------eecCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCC
Q 006424 456 ---------------------------------------KGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD 491 (645)
Q Consensus 456 ---------------------------------------~~~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~ 491 (645)
+..+|...|.+++.+|+++++|+++.. ..|++|+..
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence 112367789999999999999998753 469999987
Q ss_pred CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC------ccCCCCccccCcccc
Q 006424 492 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP------WIRDSERFSLGSWFS 565 (645)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~------~~~~~~~~~~~~~fs 565 (645)
+-.... . ...|.-.++.++|+||+.+|.+.+.|.. ..+|..-+... ....|.+.+-+..|+
T Consensus 561 ~W~~~~---------~-L~~HsLTVT~l~FSpdg~~LLsvsRDRt---~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 561 NWLQVQ---------E-LEGHSLTVTRLAFSPDGRYLLSVSRDRT---VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred chhhhh---------e-ecccceEEEEEEECCCCcEEEEeecCce---EEeeeeecccchhhhhccccccceEEEEcccC
Confidence 652211 1 1123345778999999999999998844 34444422211 256688888899999
Q ss_pred CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCc----ceEEEEecCCCeEeEEEec
Q 006424 566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATW----GLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d----~~~ivt~s~Dg~Iriw~~~ 639 (645)
||+.+.++++. |+++++|..+... .++ ........+...+ +++.+-+ +.+++.|=.-|.|.+|+.+
T Consensus 628 pde~~FaTaSR-DK~VkVW~~~~~~------d~~-i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 628 PDEKYFATASR-DKKVKVWEEPDLR------DKY-ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cccceeEEecC-CceEEEEeccCch------hhh-hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999999 9999999988762 111 1111222333332 2222222 3488889999999999976
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.7e-23 Score=188.91 Aligned_cols=251 Identities=13% Similarity=0.225 Sum_probs=194.8
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC--CCcEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR 353 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~--dg~i~ 353 (645)
++.+.+....+.|+++.|+++| .+++++.|.++++||..+++.++++. +.-.+..++|.. ..+.++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 3345555567899999999998 88899999999999999999999886 445788888887 6666766666 88999
Q ss_pred EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+.+.. +.. ..-..++|.|.| -
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L 153 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L 153 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence 99999988776 789999999999999999999999999999999997665432 111 223457899998 7
Q ss_pred EEEEEECCCeEEEEECCc----ceeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424 433 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 507 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~----~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 507 (645)
++|++.....|++||++. +..++... ......+.+.|||||++|+.++..+.+++.|.-+|....
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---------- 223 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---------- 223 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee----------
Confidence 788888777999999873 44555543 346678999999999999999999999999987762100
Q ss_pred eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
.+...+... ..-.+..|+|||+.+.+++. ||+|.+|++.
T Consensus 224 ----------tfs~~~~~~------------------------------~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~ 262 (311)
T KOG1446|consen 224 ----------TFSGYPNAG------------------------------NLPLSATFTPDSKFVLSGSD-DGTIHVWNLE 262 (311)
T ss_pred ----------eEeeccCCC------------------------------CcceeEEECCCCcEEEEecC-CCcEEEEEcC
Confidence 111111110 01123458889998888887 8999999999
Q ss_pred cCC
Q 006424 588 IDS 590 (645)
Q Consensus 588 ~~~ 590 (645)
++.
T Consensus 263 tg~ 265 (311)
T KOG1446|consen 263 TGK 265 (311)
T ss_pred CCc
Confidence 883
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=191.79 Aligned_cols=294 Identities=18% Similarity=0.256 Sum_probs=219.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
-.|+.|++.|.+||+|+.||.|.|||+.+ ...-+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T---------------------------------------------~~iar~ 60 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT---------------------------------------------FRIARM 60 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc---------------------------------------------cchhhh
Confidence 78999999999999999999999999987 344577
Q ss_pred eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424 283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 361 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 361 (645)
+.+|..+|.+++||++| .|+|+|.|..|.+||+..|.+++.+...++|+.+.|+|.+.+.+++.-.+..-.+-++..+.
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 88999999999999998 89999999999999999999999999999999999999777777776666666666666533
Q ss_pred EEEeec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 362 VVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 362 ~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
...+.. ......+..|.+.|+++++|...|.+.+||..+.+.... ..... ...|..+.++..| .+++.
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rits-----~~~IK~I~~s~~g-~~lii 213 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRITS-----VQAIKQIIVSRKG-RFLII 213 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeech-----heeeeEEEEeccC-cEEEE
Confidence 222211 111223346889999999999999999999998765432 11111 2568889999997 89999
Q ss_pred EECCCeEEEEECCcceee-----------EeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCc
Q 006424 437 TSEDSKLRILDGVDVIHK-----------FKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV 504 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~-----------~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~ 504 (645)
.+.|..|+.|++.+.... +....+...-.+++||.+|.|++.|+. ...++||.-..|......+..
T Consensus 214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-- 291 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-- 291 (405)
T ss_pred ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC--
Confidence 999999999997632221 111223344568899999999988874 468999998877432222111
Q ss_pred ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCC
Q 006424 505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 571 (645)
Q Consensus 505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l 571 (645)
.....+.+.|.|-...+++..++ .+.+|....-..+ .+|+||-+.+
T Consensus 292 -------kgE~l~DV~whp~rp~i~si~sg----~v~iw~~~~~enw----------safAPdFqel 337 (405)
T KOG1273|consen 292 -------KGEELLDVNWHPVRPIIASIASG----VVYIWAVVQVENW----------SAFAPDFQEL 337 (405)
T ss_pred -------chhheeecccccceeeeeeccCC----ceEEEEeecccch----------hhcCchHHHH
Confidence 12346789999999999988654 3456665432222 2577777644
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-22 Score=173.25 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=214.0
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
+..+.+|. -+..|.+++|+|.|.+.|.|+..++.+|........... ++ .....+
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~-----~h-ea~~~p------------------ 77 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH-----AH-EAAKQP------------------ 77 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCccc-----cc-ccccCC------------------
Confidence 33444443 566799999999999999999999999875432100000 00 000000
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE------EEEecCCCcEEEEEEee---CC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQFNP---ID 339 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~------~~~~~~~~~v~~l~~~p---~~ 339 (645)
.....+.-+.|.+.|.|.+|+|+| .+++|+.|++|++...+...+ +...-|.+.|..++|.. ..
T Consensus 78 ------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 78 ------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred ------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence 001122334689999999999998 899999999999987654333 22223889999999964 12
Q ss_pred CCEEEEEeC-CCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-Eeecccccc
Q 006424 340 DNYFISGSI-DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKT 416 (645)
Q Consensus 340 ~~~l~s~s~-dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~ 416 (645)
+.+|++++. |..|++-|-..++.. .+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-....... ..+++. ..
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-gl 229 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GL 229 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-Cc
Confidence 446777664 566777787766644 478888888876 3456889999999999999999866543221 111111 11
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
....|.+++..|.| ++|++|-.|....+||++........+.|...|.++.|+|...|+++++.|..|++=|+......
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 23679999999998 89999999999999999977666777779999999999999999999999999999999865211
Q ss_pred CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC
Q 006424 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
. ......-.+........|.|....+.+.+.|
T Consensus 309 ----e--l~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 309 ----E--LPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred ----c--CceEEEEeccCceEEEEecCccceeeeccCc
Confidence 0 1111222345556788899887666654443
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=208.01 Aligned_cols=363 Identities=13% Similarity=0.164 Sum_probs=271.0
Q ss_pred EEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 203 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 203 V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
|+++. +|. -+.++.|+.+|.+.+|++++ ++.+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt---------------------------------------------~K~v 195 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT---------------------------------------------GKVV 195 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEecc---------------------------------------------CcEE
Confidence 77776 564 35789999999999999998 6778
Q ss_pred eeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 006424 281 QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGV 357 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~ 357 (645)
.+++++...|+++.-+|- +.++.|..+|+|.+++++.++.+.+|.|. +.|+.++|.. ||+ ++++|+..|.+-+||+
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEc
Confidence 999999999999998886 58999999999999999999999999986 8999999998 665 5777777899999999
Q ss_pred CCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 358 CEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 358 ~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
+..++.. ...|.+.+....|-|....+++++.|+.+++|-..++......... ..+|..+..|+.|.-.....+.
T Consensus 275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchheeeeccCcEEEE
Confidence 9988765 3457789999999999999999999999998877654443332222 2345677888888744347788
Q ss_pred EEECCCeEEEEEC-----------------------------------------------------------------Cc
Q 006424 436 ITSEDSKLRILDG-----------------------------------------------------------------VD 450 (645)
Q Consensus 436 ~~s~dg~I~iwd~-----------------------------------------------------------------~~ 450 (645)
+++.|++.+.+++ ++
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 8888877666542 10
Q ss_pred ce-eeEeec-----CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424 451 VI-HKFKGL-----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 524 (645)
Q Consensus 451 ~~-~~~~~~-----~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~ 524 (645)
.. ..+... .....+++++.++.|++.+.|++.|.|-+|++.++-...... -...+++.+++++-..-
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-------~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-------DSPAHKGEVTGLAVDGT 504 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-------cCccccCceeEEEecCC
Confidence 00 000000 022568899999999999999999999999999883211110 01246788999998888
Q ss_pred CccccccCCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhh
Q 006424 525 GTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 603 (645)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~ 603 (645)
+..+.+++.+++ ..+|+-..... ..-..+..++++.+......++.+-. +-.|++.|..+. +..
T Consensus 505 n~~~vsa~~~Gi---lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-df~I~vvD~~t~-----------kvv 569 (910)
T KOG1539|consen 505 NRLLVSAGADGI---LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-DFSIRVVDVVTR-----------KVV 569 (910)
T ss_pred CceEEEccCcce---EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-ceeEEEEEchhh-----------hhh
Confidence 888888887755 45676644332 11112345566667777776666655 789999999987 444
Q ss_pred hhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEe
Q 006424 604 QQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 604 ~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
+.+.+|.+.. .+|++ ||++|++++.|++||+||+
T Consensus 570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDL 605 (910)
T ss_pred HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEec
Confidence 5555555544 55666 8999999999999999995
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=210.67 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=208.5
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|++.-+.++|.|+|++|++++.||.|++|+..+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------------------------------------- 46 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------------------------------------- 46 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------
Confidence 3799999999999999999999999999999876521
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
..-..+.-+...|.+++.. .++|++|+.+++|.+|.+.+++.-..+ ...-++++++|+. +|++++.||.|-.|++.
T Consensus 47 -e~P~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 47 -EEPETIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLL 123 (933)
T ss_pred -cCCchhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEE
Confidence 1112222267778888754 348999999999999999888765444 3667899999998 99999999999999999
Q ss_pred eCCCC-cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCCeEEEEEcCCCCcE
Q 006424 356 GVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSRDESQR 433 (645)
Q Consensus 356 d~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~s~~g~~~ 433 (645)
++... ....+.+|..+|.++.|+|++++||+.+.||.|++||+.+.......-......... ...+..++|+|+| ..
T Consensus 124 ~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~ 202 (933)
T KOG1274|consen 124 NLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GT 202 (933)
T ss_pred eccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-Ce
Confidence 98764 455688999999999999999999999999999999999776543321111111111 3557789999997 57
Q ss_pred EEEEECCCeEEEEECCcceeeE--eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 434 IMITSEDSKLRILDGVDVIHKF--KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
++....|+.|++|+.......+ ....+...+..+.|+|+|+|||+++.||.|.|||.++... ......+.|+.+.
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWK 279 (933)
T ss_pred EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecC
Confidence 8888889999999977544444 3444555699999999999999999999999999997322 2233445555666
Q ss_pred cCCc
Q 006424 512 SEGV 515 (645)
Q Consensus 512 ~~g~ 515 (645)
+++.
T Consensus 280 p~~n 283 (933)
T KOG1274|consen 280 PNAN 283 (933)
T ss_pred CCCC
Confidence 5543
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=196.92 Aligned_cols=324 Identities=17% Similarity=0.234 Sum_probs=233.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
.-|.|++|.++|. ++||..+|.|.||+..+. +..
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---------------------------------------------~~~ 280 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTN---------------------------------------------RIS 280 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---------------------------------------------eEE
Confidence 5799999999985 789999999999998652 223
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-----------------------------------------Ce
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-----------------------------------------NQ 319 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-----------------------------------------~~ 319 (645)
+....|.+.|.+++...+|.|+||+.|..|..||-.- +-
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 3444899999999999999999999999999998210 01
Q ss_pred EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 320 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 320 ~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
.+..++|....+.++.+| +.+.+++++.|+.+++|+ ..++.-.....++..|+.|+|.| .+|+|+..|...+.|..
T Consensus 361 ~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred eEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 112235777889999999 889999999999999999 55666566677889999999999 99999999999999998
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe--ecCCCCCeEEEEEecCCCEEE
Q 006424 400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK--GLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~i~~v~~sp~~~~l~ 477 (645)
+........ . ..+++++.|+|+| .+||.|+.|+.|+||-+......+. +..+..+|+.+.||+|+++|.
T Consensus 437 ~~~lv~~~~--d------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 437 TQDLVTIHT--D------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred cceeEEEEe--c------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 855433211 1 3789999999998 8999999999999998764333332 222448999999999999999
Q ss_pred EEeCCccEEEEeCCCCCcCCCcccCCc----cee-eeee----cC-CcEEEEecCCCCccccccCCCCccccCc--cccc
Q 006424 478 SIGDDCRVYVWNYDELCFPSSKQKNSV----RSC-EHFF----SE-GVSVAVQWPGIGTEQKSLCSSSLRDCSQ--KWDN 545 (645)
Q Consensus 478 t~s~dg~I~iwd~~~~~~~~~~~~~~~----~~~-~~~~----~~-g~~~~v~~s~~~~~l~~~~~~~~~~~~~--~w~~ 545 (645)
+-+.|-.|..| ..+....... .+.+ ..| +-|. .+ ..+.+++-+-....+++....+..+.+. .-..
T Consensus 508 ~~S~d~eiLyW-~~~~~~~~ts-~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~ 585 (626)
T KOG2106|consen 508 SNSGDYEILYW-KPSECKQITS-VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP 585 (626)
T ss_pred eccCceEEEEE-ccccCcccce-ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC
Confidence 99999999999 3333222111 2211 111 1121 11 2233444455555555544443322221 1112
Q ss_pred cccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424 546 LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 586 (645)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~ 586 (645)
-...+...+|++.++.++|+-+..++.+... |..|..|++
T Consensus 586 rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-D~Si~qW~l 625 (626)
T KOG2106|consen 586 RAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-DTSIMQWRL 625 (626)
T ss_pred cccceeeccccceeEEEEEeeCCceEEecCC-CceEEEEEe
Confidence 2223355667889999999998887776664 888888875
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-24 Score=219.20 Aligned_cols=244 Identities=16% Similarity=0.266 Sum_probs=199.9
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 203 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 203 V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
+..+.|+. +.++|||++..|.|.+||+... ...+.+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~ 127 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT 127 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence 45566764 4679999999999999999751 0245567
Q ss_pred eeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 282 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
.|..|+..++++.|++. ++|++||.||+|++||++..+...++. ....|+.+.|+|..+++|+++.+.|.+.+||+|
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 88899999999999975 489999999999999999888877774 667899999999889999999999999999999
Q ss_pred CCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 359 EKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 359 ~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
.... ..+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+...... ...+. ..++.++.|-|..+.+|++
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence 8553 45788999999999999999999999999999999986554322 22222 3789999999998778888
Q ss_pred EEC--CCeEEEEECCcceeeEe-ecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCC
Q 006424 437 TSE--DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 437 ~s~--dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
++. |-.|+|||++.+...+. ...|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 764 78999999986544333 345888999999955 55678999999999877776653
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=7.7e-23 Score=206.55 Aligned_cols=277 Identities=25% Similarity=0.430 Sum_probs=206.4
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeE-ec-CCCCccc-C----CCCceEEecccCC
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FT-DDGGFGS-N----AKEGKIKFGKKKS 261 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~-~~-~~~~~~~-~----~~~~~~~~~~~~~ 261 (645)
...+.+++.||...|..+++.++. .++++|.||++++|+-......... +. +.+.... . ...+.+.+.....
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 345678899999999999987554 8999999999999998665443321 11 1111111 0 1111122222111
Q ss_pred CcceeecCCCceec-cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCC
Q 006424 262 SHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID 339 (645)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~ 339 (645)
.. . ++.. ...++..+.||...|.+++...++.++|||.|.++++|... ++...+ +|+..|++++..| +
T Consensus 82 ~i-~------v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e 151 (745)
T KOG0301|consen 82 TI-I------VFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-E 151 (745)
T ss_pred eE-E------EEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-C
Confidence 11 1 1221 35788999999999999998777789999999999999874 444444 5999999999998 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
+ .+++|+.|.+|++|.- ......+.+|.+.|+.+++-+++ .|++++.||.|++|++.+... .+ +++ |..
T Consensus 152 ~-~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~~---~~g----htn 220 (745)
T KOG0301|consen 152 N-TYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-LE---MHG----HTN 220 (745)
T ss_pred C-cEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCcee-ee---eec----cce
Confidence 4 8999999999999986 44455688999999999998765 688899999999999954433 22 333 357
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.+.+++...++ ..++++++|++++||+...+.+.+.. ....|.++.+-++|. |++|++||.||||..+
T Consensus 221 ~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 221 FVYSISMALSD-GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEEEecCCC-CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 89999966665 69999999999999998877777765 455889999888876 6677889999999876
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=196.05 Aligned_cols=287 Identities=14% Similarity=0.173 Sum_probs=218.5
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-.+.|+++.|+|....|++|+.||+++||.+.... ..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~ 248 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NP 248 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Ch
Confidence 45789999999999999999999999999987521 33
Q ss_pred CceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe---cC-CCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DH-HNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~---~~-~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
.++.+.--..+|.+++|.|+| .+++++.....+.||+.+.+..+.- ++ ...+.....+| ++++|+..+..|.|
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I 327 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHI 327 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceE
Confidence 456666667899999999987 6889999999999999988765433 22 34677888899 99999999999999
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
.+....+++.+......+.|..++|+.+|+.|++.+.+|.|.+||++....... +.-.+. -.-++++.+++| .
T Consensus 328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r-f~D~G~-----v~gts~~~S~ng-~ 400 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR-FVDDGS-----VHGTSLCISLNG-S 400 (514)
T ss_pred EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE-EeecCc-----cceeeeeecCCC-c
Confidence 999999999999888999999999999999999999999999999998855332 222221 234677888887 7
Q ss_pred EEEEEECCCeEEEEECCcc------eeeEeecCCCCCeEEEEEecCCCEEEEEeC--CccEEEEeCCCCCcCCCcccCCc
Q 006424 433 RIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCFPSSKQKNSV 504 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~--dg~I~iwd~~~~~~~~~~~~~~~ 504 (645)
++|+|+..|.|.|||.... ........-...|+++.|+||++.||.+|. +..+++-.+.+.
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~----------- 469 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC----------- 469 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-----------
Confidence 9999999999999996532 222222234567999999999999998874 345555444322
Q ss_pred ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424 505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW 584 (645)
Q Consensus 505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW 584 (645)
..| ..|.. ....-+++++++|||.|-+++.+.. .|++.+|
T Consensus 470 ---TVF------------------------------sNfP~------~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~ 509 (514)
T KOG2055|consen 470 ---TVF------------------------------SNFPT------SNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLF 509 (514)
T ss_pred ---eee------------------------------ccCCC------CCCcccceEEEEecCCCceEEeecC-CCceeeE
Confidence 001 11111 1122345677788888888877777 7888888
Q ss_pred CCc
Q 006424 585 DVT 587 (645)
Q Consensus 585 d~~ 587 (645)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 653
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=182.51 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=193.1
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
-+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---------------------------------------- 104 (347)
T KOG0647|consen 65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---------------------------------------- 104 (347)
T ss_pred chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------------------------------
Confidence 3556789999999999999999999999999999999873
Q ss_pred eeccCCCceeeccCccCeEEEEEcCC-C--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~-~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+..+..|.++|.++.|-+. + .|+|||.|++|+.||.+...++.++...+.++++..- ..+++++..+
T Consensus 105 ------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~ 175 (347)
T KOG0647|consen 105 ------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAE 175 (347)
T ss_pred ------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecC
Confidence 35667789999999999764 2 7999999999999999999999999999999998873 4688889999
Q ss_pred CcEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc--c---CCCCe
Q 006424 350 GKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--T---SGNKI 421 (645)
Q Consensus 350 g~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~---~~~~i 421 (645)
+.|.+|+++.+.... ....+-.++|++..++....+.|+-+|.+.+..+..... ...+.+.-|+. . .-..|
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEe
Confidence 999999997754322 233556789999999999899999999999999887533 22222322221 1 12467
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
++|+|+|.. ..|++++.||++.+||-....+......+..+|++.+|+.+|.++|-+.
T Consensus 255 Nsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 255 NSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 889999985 7999999999999999665555555566899999999999999887664
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.4e-22 Score=181.50 Aligned_cols=311 Identities=18% Similarity=0.247 Sum_probs=211.3
Q ss_pred ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 197 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 197 ~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
..|.+.|+++...+ .|+|+++|+.||.|.+||+++...... . .+.+. ...
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~----s-~li~k----------------------~~c-- 90 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA----S-GLIAK----------------------HKC-- 90 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh----c-cceeh----------------------eee--
Confidence 35999999999998 689999999999999999987321000 0 00000 000
Q ss_pred cCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC--CEEEEEeCCCc
Q 006424 276 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGK 351 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~--~~l~s~s~dg~ 351 (645)
.-....-.+|...|..+.|-|- |.+.+++.|.+++|||..+-+....|..++.|+.-+++|... -++|+|..|-.
T Consensus 91 -~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 91 -IVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred -eccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 0011233478999999999873 699999999999999999999999999999999999998432 36788888899
Q ss_pred EEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
|++-|+.+|.... +.+|.+.|.++.|+|... .|++|+.||.|++||++...--......+.
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn----------------- 232 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN----------------- 232 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-----------------
Confidence 9999999988755 789999999999999777 567899999999999984321111111110
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC---Ccce
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN---SVRS 506 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---~~~~ 506 (645)
+. +.+... ....|.+.+.+++|+.++.++++++.|.++++|+..++...+....+ ....
T Consensus 233 ------------~k-----~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 233 ------------TK-----RPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred ------------Cc-----cCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 00 001111 12347888999999999999999999999999998887533322111 0011
Q ss_pred eeeee----cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424 507 CEHFF----SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 582 (645)
Q Consensus 507 ~~~~~----~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~ 582 (645)
...++ ..+..+.+... ++..|..+.+... ++.|+ .+...+.+.+|-|+-+-..+++. |+.|.
T Consensus 295 ~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~---ir~l~---------~h~k~i~c~~~~~~fq~~~tg~~-d~ni~ 360 (397)
T KOG4283|consen 295 SFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSF---VRRLS---------THLKRINCAAYRPDFEQCFTGDM-NGNIY 360 (397)
T ss_pred cceEEEeecccceEEEEecC-CeEEEEEccCceE---EEeee---------cccceeeEEeecCchhhhhcccc-CCccc
Confidence 11111 12222222222 4445555444322 22332 24455667778888888888888 89999
Q ss_pred CCCC
Q 006424 583 LWDV 586 (645)
Q Consensus 583 iWd~ 586 (645)
.|-.
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 9965
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=9.3e-23 Score=197.11 Aligned_cols=222 Identities=19% Similarity=0.326 Sum_probs=177.6
Q ss_pred ccccccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
...-+|.||++.=+.++|++... +|++|+.|++|.+||+........
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~-------------------------------- 215 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK-------------------------------- 215 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc--------------------------------
Confidence 34457899999889999999654 899999999999999986321100
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCC--eEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~--~~~~~~-~~~~~v~~l~~~p~~~~~l~ 344 (645)
...+...+.+|+..|..++|++- ..+++++.|+.+.|||++++ ++.... .|...|+|++|+|.++.+||
T Consensus 216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE
Confidence 13456788899999999999975 48999999999999999953 333333 48999999999999999999
Q ss_pred EEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeee-------EEeecccc
Q 006424 345 SGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-------KVDFHDRK 414 (645)
Q Consensus 345 s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~-------~~~~~~~~ 414 (645)
+||.|++|.+||+|. ..+..+.+|...|.++.|+|. ...||+++.|+.+.+||+..-..... ...+.-..
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 999999999999997 446678999999999999995 45888899999999999964322210 00000112
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
.+|...|..+.|+|..+..+++.+.|+.+.||....
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 346788999999999989999999999999999653
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.1e-23 Score=205.72 Aligned_cols=250 Identities=14% Similarity=0.254 Sum_probs=205.0
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
....++.|.+.|+.+....+|+.|+++|.|-+|++|+...+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------------------------------------- 106 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------------------------------------- 106 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------------------------------------
Confidence 355688999999999999999999999999999999987631
Q ss_pred ceeccCCCceeeccCccCeEEEEE-cCCC-eEEEEeCCCcEEEEecCCC--eEEEEe----------cCCCcEEEEEEee
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF----------DHHNYVTCVQFNP 337 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~-s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~----------~~~~~v~~l~~~p 337 (645)
.-...++..|.+.|.|+++ .+++ .++|||.|+.|.+||++++ +.+..+ ++...|++++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 1345678889999999999 5555 8999999999999999987 233332 3667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 338 IDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 338 ~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
.+..+++|+..+.+++||.++++ +..+.+|...|.++..++||..+++++.||+|++||+........ +..+
T Consensus 182 -t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH----- 254 (735)
T KOG0308|consen 182 -TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH----- 254 (735)
T ss_pred -cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec-----
Confidence 88899999999999999999854 566889999999999999999999999999999999998776543 3333
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...+.++..+|+- ..+++|++||.|..=|+++............+|..+..+...+-+-+++.|+.|+-|.....
T Consensus 255 -~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 255 -KEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred -cCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 3569999999985 89999999999999998864333333335667777777765555577788999999987643
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=184.31 Aligned_cols=283 Identities=18% Similarity=0.209 Sum_probs=194.0
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-----EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-----~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
+..++||.+.|++++|+.+| +|++++.|++|++|+++... +++..-.-+..+.+.|.|....+++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 56788999999999999998 99999999999999987532 2222112235678899994344555566667899
Q ss_pred EEeCCCCc----E---EE------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 354 IWGVCEKR----V---VD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 354 vwd~~~~~----~---~~------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+|.+...+ . +. ...|.-.+..+-...++.++++++.|..|.+|++++..+. .+.. ....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~--~idt------nq~~ 230 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ--SIDT------NQSS 230 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee--eecc------cccc
Confidence 99764322 1 11 1234445666666778899999999999999999954322 2221 1245
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEEC--------CcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
-+..+.+|+| +++++++.--.|++|.. .+..+.+...+|...|..++|+++...++|.|.||+++|||.+-
T Consensus 231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 5678899998 89999999999999983 24456667777999999999999999999999999999999863
Q ss_pred CCc----CC--Cc------ccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCcccc
Q 006424 493 LCF----PS--SK------QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL 560 (645)
Q Consensus 493 ~~~----~~--~~------~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 560 (645)
... +. .. ........+..+|+|.++++++..+-..+.+-... .-.....-|+..+.
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~------------~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK------------DYPELEDIHSTTIS 377 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc------------cchhHHHhhcCcee
Confidence 211 00 00 01111123345566666666554443333321111 01112344677899
Q ss_pred CccccCCCCCCcCCCCCCCcCCCCC
Q 006424 561 GSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 561 ~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
+++|++||+++++.. |..+++.-
T Consensus 378 ~is~~~~g~~~atcG--dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCG--DRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeec--ceeeeeec
Confidence 999999999998876 56777664
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6e-22 Score=186.57 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=195.3
Q ss_pred ccccCcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 197 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
-+|.+.|+.+.-++-|+ +.|+=+..|.|.||++...-.. +...+ . .+..
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~---l~~~~--------------------~------~~~~ 198 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA---LSEPG--------------------L------EVKD 198 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh---hcCcc--------------------c------cccc
Confidence 36889999998888664 6666788999999998752100 00000 0 0001
Q ss_pred ccCCCceeeccCccCeEEEEEcC--CCeEEEEeCCCcEEEEecCCCeEEE----EecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~--~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
...+++.++.+|...=+.|+||| .|.|+||..-+.|++|...++.-.. ..+|+..|..++|+|.....|++||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 13678899999999999999998 4689999999999999998875432 23599999999999988889999999
Q ss_pred CCcEEEEeCCCC---cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee--eeEEeeccccccCCCCeEE
Q 006424 349 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 349 dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~ 423 (645)
||+|+|||+|.+ .++....|.+.|+.++|+.+-.+||+|+.||+++|||++..+.. +..+.. |..+|++
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~------Hk~pIts 352 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY------HKAPITS 352 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe------ccCCeeE
Confidence 999999999987 56677899999999999998889999999999999999976543 223333 3589999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCc------------------ceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCc
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDC 483 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg 483 (645)
+.|+|.....+++++.|.+|.+||+.- +-+.+..+.....+..+.|++.- .+|++.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 999998778999999999999999541 01123334445677888998864 4777777777
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6e-21 Score=175.41 Aligned_cols=250 Identities=23% Similarity=0.364 Sum_probs=186.1
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|.+-|+|+.|.+.|+.+|||+.|++|+|||..+... .
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------------------------~ 48 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------------------------T 48 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------c
Confidence 47999999999999999999999999999999754211 1
Q ss_pred CCCceeeccCccCeEEEEEcC-C-C-eEEEEeCCCcEEEEecCC------C-eE--EEEe-cCCCcEEEEEEeeCC-CCE
Q 006424 277 ESPLQELHGHKGDVLDLAWSN-S-N-YLLSCSMDKTVRMWQVGC------N-QC--LNVF-DHHNYVTCVQFNPID-DNY 342 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~-~-~-~l~s~s~dg~I~iwd~~~------~-~~--~~~~-~~~~~v~~l~~~p~~-~~~ 342 (645)
.......+.|.+.|..+.|.+ . | .+++|+.|+++.||.=.. + +- ..++ ...+.|+.+.|.|.. |-.
T Consensus 49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 233466788999999999975 3 4 799999999999996421 1 11 1122 466789999999832 446
Q ss_pred EEEEeCCCcEEEEeCCCCcEE-E-------------eeccCCCeEEEEEccC---CCEEEEEecC-----CeEEEEEecC
Q 006424 343 FISGSIDGKVRIWGVCEKRVV-D-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKASG 400 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~-~-------------~~~~~~~v~~l~~sp~---g~~l~~g~~d-----g~i~iwd~~~ 400 (645)
|++++.||.+|||+.-...-+ . ...+.....|+.|+|. ..+||+|+.+ +.++||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 899999999999987542211 1 1134556788999983 4688888876 5788998765
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcc-------------------eeeE-ee
Q 006424 401 NDLKLEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV-------------------IHKF-KG 457 (645)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~-------------------~~~~-~~ 457 (645)
.......+ .....+..+|+.++|.|+- ..+|++++.|| |+||.+... +... ..
T Consensus 209 ~~rKw~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 209 NGRKWLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred Ccceeeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 54332211 1223567999999999972 25789999999 999986521 1111 23
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 458 LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 458 ~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
..|.+.|..+.|.-.|..|++.|+||+|++|...
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 4588999999999999999999999999999754
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-21 Score=178.54 Aligned_cols=233 Identities=19% Similarity=0.286 Sum_probs=188.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--------------------------------------------- 85 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--------------------------------------------- 85 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCC---------------------------------------------
Confidence 4999999999997 457999999999999999863
Q ss_pred CCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 278 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
....+..|...|.|+.+++. +.+++||.|++|++||.+.......+.....|.|+.. .++.|++|+.|..+.+||
T Consensus 86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEE
Confidence 23456679999999999975 6999999999999999998777778887889999988 578999999999999999
Q ss_pred CCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce-eeeEEeecccccc-----CCCCeEEEEEc
Q 006424 357 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKT-----SGNKITGIQFS 427 (645)
Q Consensus 357 ~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~-----~~~~i~~i~~s 427 (645)
++...... ....+..+.|+++.|++.-+++++-||.|.+=.+..... ......+..|... ...+|++++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99865433 445567899999999999999999999988766654411 1112222222111 13478999999
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
|-. ..+++|+.||.|.+||+....+....+.....|.+++|+.+|..||++++
T Consensus 242 p~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccc-ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 984 79999999999999998866665666556778999999999999999974
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-20 Score=188.88 Aligned_cols=376 Identities=16% Similarity=0.194 Sum_probs=253.0
Q ss_pred ccccccccccc-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 190 LYTSQEIQAHK-GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 190 ~~~~~~l~~H~-~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+...++.++. +.|-+++|+ ++..|.+.+.+|.|.-||+.+
T Consensus 58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~------------------------------------- 99 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT------------------------------------- 99 (691)
T ss_pred ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-------------------------------------
Confidence 34555666765 489999999 555788999999999999987
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~ 344 (645)
.++...+....+.|++++.+|.+ .++.|+.||.+...+...+...... ...+.|.+++|+| ++..++
T Consensus 100 --------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~ 170 (691)
T KOG2048|consen 100 --------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIA 170 (691)
T ss_pred --------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEE
Confidence 45566777788999999999987 8889999998888888877765443 2568999999999 899999
Q ss_pred EEeCCCcEEEEeCCCCcEEE-----eecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424 345 SGSIDGKVRIWGVCEKRVVD-----WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~-----~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
.|+.||.|++||...+.... +... ..-|.++.|-.++ .+++|...|+|.+||.....+... ..
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS-------~~ 242 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQS-------HS 242 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhh-------hh
Confidence 99999999999999877655 2222 2346777777544 799999999999999987765322 22
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.|...|.+++..+++ ..+++++.|+.|.-|...... .......|...+.+++..++ .+++|+.|+.+.+-...
T Consensus 243 ~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 243 CHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred hhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 345789999999997 799999999999888754321 22223446667788777655 67777777666554332
Q ss_pred C------------------------------------------CC----------cCCCcccCCcceeeeeecCCcEEEE
Q 006424 492 E------------------------------------------LC----------FPSSKQKNSVRSCEHFFSEGVSVAV 519 (645)
Q Consensus 492 ~------------------------------------------~~----------~~~~~~~~~~~~~~~~~~~g~~~~v 519 (645)
. .- ...........+|...+|+|...++
T Consensus 320 ~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~ 399 (691)
T KOG2048|consen 320 EFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAI 399 (691)
T ss_pred ccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEE
Confidence 2 10 0000111223334444555554444
Q ss_pred ec---------CC--------------------------CCccccccCCCCccccCcccccc--cc-----CC--ccCCC
Q 006424 520 QW---------PG--------------------------IGTEQKSLCSSSLRDCSQKWDNL--ET-----AP--WIRDS 555 (645)
Q Consensus 520 ~~---------s~--------------------------~~~~l~~~~~~~~~~~~~~w~~~--~~-----~~--~~~~~ 555 (645)
.- .| |+..++.... ...-|..+ +. .. .....
T Consensus 400 st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~-----~~~~le~~el~~ps~kel~~~~~~~~ 474 (691)
T KOG2048|consen 400 STVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK-----NIFSLEEFELETPSFKELKSIQSQAK 474 (691)
T ss_pred eeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec-----ccceeEEEEecCcchhhhhccccccC
Confidence 32 11 1111110000 00111110 00 00 11122
Q ss_pred CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeE
Q 006424 556 ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKT 635 (645)
Q Consensus 556 ~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iri 635 (645)
...+..++.|+||++++.++- .+.|.+|++.+.+.. .+ ...........++.|.+-..||-+..|+.+.=
T Consensus 475 ~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~--------~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~e 544 (691)
T KOG2048|consen 475 CPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLESH--------LL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFE 544 (691)
T ss_pred CCcceeEEEcCCCCEEEEEec-cceEEEEEcccceee--------cc-hhccCcceeeeeccccccCcEEEEecCCeEEE
Confidence 345777899999999999886 899999999988311 11 11222444456677766778888999999999
Q ss_pred EEe
Q 006424 636 FHN 638 (645)
Q Consensus 636 w~~ 638 (645)
|++
T Consensus 545 fdi 547 (691)
T KOG2048|consen 545 FDI 547 (691)
T ss_pred Eec
Confidence 988
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=9e-22 Score=197.04 Aligned_cols=295 Identities=18% Similarity=0.298 Sum_probs=205.2
Q ss_pred EEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 205 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 205 ~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
+..|++- ...|+.+.+||.|.++|.... .+..+...+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk 94 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK 94 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence 3667653 348999999999999998762 1222344566
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
....|...|.++.|-|.. .|++++.|.++++||+++.++... ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 777899999999999954 899999999999999999888765 4799999999999988899999999999999999
Q ss_pred CCCcEE----------------------------EeeccCCCeEE---EEEccCCCEEEEEec-CCeEEEEEecCCceee
Q 006424 358 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 405 (645)
Q Consensus 358 ~~~~~~----------------------------~~~~~~~~v~~---l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~ 405 (645)
+....- ....+...|.+ +.+..|...||+++. |+.|+|||++......
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 753310 01112223444 445578888888877 9999999999776544
Q ss_pred eEEeeccc-c---ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424 406 EKVDFHDR-K---KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 406 ~~~~~~~~-~---~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~ 477 (645)
........ . ......++++.....| .+|++.+.|+.|++|++.. +...+.+......-..-..+|++.+++
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 32111110 0 1113457788888887 6677777799999999763 333444433333333445689999999
Q ss_pred EEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccCCCCccccCccccccccCCc
Q 006424 478 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLCSSSLRDCSQKWDNLETAPW 551 (645)
Q Consensus 478 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~~~~~~~~~~~w~~~~~~~~ 551 (645)
+|+.|...++|.+...+.+.... ..+.-.+..|.|.|... .++++..| ..+.+|+.......
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l---------~Ght~eVt~V~w~pS~~t~v~TcSdD---~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALL---------LGHTREVTTVRWLPSATTPVATCSDD---FRVKIWRLSNGLEE 396 (720)
T ss_pred ccCCCcceeeeeecCccCChhhh---------hCcceEEEEEeeccccCCCceeeccC---cceEEEeccCchhh
Confidence 99999999999999875433221 22333467888876543 23333443 33566766444433
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.8e-20 Score=187.78 Aligned_cols=252 Identities=15% Similarity=0.148 Sum_probs=179.3
Q ss_pred ccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
.+.+.+|. .+.+++|+|+|+.+ ++++.++.|++||..++.
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------------------------------------- 64 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------------------------------------- 64 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------------------------------------
Confidence 34455444 36789999999976 567789999999988632
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
....+..+.. +..++|+|++ .++ +++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++.+
T Consensus 65 -------~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~ 135 (300)
T TIGR03866 65 -------VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET 135 (300)
T ss_pred -------EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence 2233333322 4578899987 454 55678999999999988888777666678999999 99999988876
Q ss_pred C-cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeecccc-ccCCCCeEEEEE
Q 006424 350 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQF 426 (645)
Q Consensus 350 g-~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~ 426 (645)
+ .+.+||..+++..........+.+++|+|+|+++++++ .++.+++||+.+..... .+...... .........+.|
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEE
Confidence 5 46778998877765444445678899999999886554 68999999998765422 22221100 001123456889
Q ss_pred cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCC
Q 006424 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELC 494 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~ 494 (645)
+|++...+++.+.++.+.+||..+....... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9998433455566778999998754332221 234578899999999999886 468999999999874
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.9e-22 Score=203.84 Aligned_cols=234 Identities=18% Similarity=0.329 Sum_probs=180.4
Q ss_pred CeEEEEEcC--CCeEEEEeCCCcEEEEecCC---CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424 289 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGC---NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 362 (645)
Q Consensus 289 ~V~~l~~s~--~~~l~s~s~dg~I~iwd~~~---~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 362 (645)
.+..+.|.. +++|++++..|.|.+||+.. .+.+..| .|...++++.|++...++|++|+.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455677873 35899999999999999976 4444455 49999999999998999999999999999999998665
Q ss_pred EE-eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 363 VD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 363 ~~-~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.. +.+....|..+.|+| .+..|+++...|.+++||++....... ....|.++|.|+.|+|++ .+||+|++|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~------k~~AH~GpV~c~nwhPnr-~~lATGGRD 241 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK------KLTAHNGPVLCLNWHPNR-EWLATGGRD 241 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH------HhhcccCceEEEeecCCC-ceeeecCCC
Confidence 44 566778899999999 577999999999999999997765332 234456999999999986 899999999
Q ss_pred CeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCE-EEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcE
Q 006424 441 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 516 (645)
Q Consensus 441 g~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~-l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 516 (645)
+.|+|||.... ...........++..+.|-|...+ ||+++ .|-.|+|||+..+..+... ...+...+
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t---------~~eH~~~v 312 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT---------FLEHTDSV 312 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee---------eeccCccc
Confidence 99999997632 222222235678999999998764 66665 4889999999877443322 22345566
Q ss_pred EEEecC-CCCccccccCCCCccc
Q 006424 517 VAVQWP-GIGTEQKSLCSSSLRD 538 (645)
Q Consensus 517 ~~v~~s-~~~~~l~~~~~~~~~~ 538 (645)
..++|. .|...+|+++.|+...
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cceeccCCCceeeEeecCccHHH
Confidence 777885 4666777777776543
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-21 Score=195.43 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=119.1
Q ss_pred eEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 372 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 372 v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
|+.+.|+| |...|++++.||.|++|.+..+...-...........|...|+++.|+|-....|++++.|.+|++||+..
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 66778888 66789999999999999998766544333333334456789999999997667999999999999999987
Q ss_pred ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424 451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 530 (645)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~ 530 (645)
.....+...|.+.|.+++|||+|+.+|+.+.||+|++|+-.+.+.+.......+- +.---+.|.-+|.++..
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--------tRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG--------TRGARILWACDGRIVIV 781 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc--------CcceeEEEEecCcEEEE
Confidence 6666666669999999999999999999999999999999887655554333221 11223556667777665
Q ss_pred cCCC
Q 006424 531 LCSS 534 (645)
Q Consensus 531 ~~~~ 534 (645)
.+-|
T Consensus 782 ~Gfd 785 (1012)
T KOG1445|consen 782 VGFD 785 (1012)
T ss_pred eccc
Confidence 5554
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.1e-21 Score=192.83 Aligned_cols=289 Identities=17% Similarity=0.338 Sum_probs=210.6
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----------eeEecCCCCc--ccCCCCceEEecc
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS----------CKSFTDDGGF--GSNAKEGKIKFGK 258 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~ 258 (645)
.+...++||++.|.|+...|.|.+|++|+.||+|+||.+.++.+. +..|.+.... ++.+....+.+..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 355668999999999999999999999999999999999998774 3445555433 2222222222221
Q ss_pred cCCC-cc-------eeecC---------CCceecc-----CCCceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEE
Q 006424 259 KKSS-HV-------PVVIP---------DEVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRM 312 (645)
Q Consensus 259 ~~~~-~~-------~~~~~---------~~~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~i 312 (645)
..-+ .. ..... ...|.-. ...++..-.|...|..+.|+..| +|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1111 00 00000 0122211 12234555689999999999887 88876553 57999
Q ss_pred EecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecC
Q 006424 313 WQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSIT 390 (645)
Q Consensus 313 wd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~d 390 (645)
+++.......-|. ..+.|.++.|+| ...+|++++. ..|++||+....++. +......|..++.+|.|..|++|+.|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9998777766664 667899999999 7777777764 689999998766544 55566789999999999999999999
Q ss_pred CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-------c----ceeeEeecC
Q 006424 391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKGLP 459 (645)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-------~----~~~~~~~~~ 459 (645)
+.+..||+.-...+......| ...+++++|++.- .++++|+.||++.|+... + ++..+.++.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred CeeEEEEcccCcchhHHhhhh------hhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999998776666555444 4789999999985 799999999999998632 1 223333322
Q ss_pred --CCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 460 --KSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 460 --~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
....|..+.|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 23458899999999999999999999998
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=9.4e-22 Score=198.77 Aligned_cols=201 Identities=17% Similarity=0.340 Sum_probs=169.2
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEE-EEEeeCCCCEEEEEeCCCcEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTC-VQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~-l~~~p~~~~~l~s~s~dg~i~ 353 (645)
+..+.+.||...|..++..+...++++|+||++++|+-..++.+... +|.+.|.+ +++.+.++..+++|+.|.++.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 44578899999999999887779999999999999998777666532 46776766 888764666799999999999
Q ss_pred EEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 354 IWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 354 vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+|...+.... .+.+|...|++++...++. +++|+-|.++++|-....... ..+|...|..+..-|++
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---------l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---------LQGHTASVWAVASLPEN-- 152 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---------cCCcchheeeeeecCCC--
Confidence 9999887655 4789999999999888887 999999999999987643221 33457899999999985
Q ss_pred EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+++|+.|.+|++|...+...++.+ |...|.++++-+++ .+++++.||.|+.|++...
T Consensus 153 ~~vTgsaDKtIklWk~~~~l~tf~g--HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGGTLLKTFSG--HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred cEEeccCcceeeeccCCchhhhhcc--chhheeeeEEecCC-CeEeecCCceEEEEeccCc
Confidence 8999999999999999888999988 89999999998764 5778999999999999544
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=187.38 Aligned_cols=252 Identities=21% Similarity=0.301 Sum_probs=187.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeE
Q 006424 212 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 291 (645)
Q Consensus 212 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 291 (645)
|+|+|.|+.|..|.|||+.-.......+... ...+ +.....++.-..-.+|+..|.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------------s~~s---------k~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------------SKAS---------KKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeec---------------hhhh---------hhhhhhcccccccccchHHHH
Confidence 6799999999999999986432221111100 0000 000000111223457999999
Q ss_pred EEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEEeec
Q 006424 292 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWAD 367 (645)
Q Consensus 292 ~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~ 367 (645)
+++|+.. +.|+|||.|.+|++||+.++++...+. |.+.|.++.|+|..+.+|++|+.|++|.+.|.|... .-..-.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 9999864 589999999999999999999999997 888999999999889999999999999999998522 222334
Q ss_pred cCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 368 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 368 ~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
..+.|-.+.|+|.. ..+++++.||+++-+|++....+...+..| ...|.++++++.-+.++++++.|+.|++|
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH------DDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec------cCCcceEEecCCCCcceeeccccceEEEE
Confidence 56778899999955 477888999999999999887666555544 47999999999888899999999999999
Q ss_pred ECCc--ceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424 447 DGVD--VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~~--~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~ 493 (645)
++.. ..........-+...|+++.|+-. +++.|+..+.++|||+.+.
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9652 211111111233466777777654 5777888889999999876
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.5e-23 Score=207.38 Aligned_cols=235 Identities=24% Similarity=0.414 Sum_probs=203.7
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+.+-.|...|.|+..-..++.+++|+.|..+.+|.+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k------------------------------------------ 59 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK------------------------------------------ 59 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC------------------------------------------
Confidence 45668999999999977889999999999999998875
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
...+..+.+|+.+|.++.|+++. .|++|+.+|+|++||++.++.++++ +|...+..+.|+| -+.++++|+.|+.
T Consensus 60 ---p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd 135 (825)
T KOG0267|consen 60 ---PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTD 135 (825)
T ss_pred ---CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEecccccccc
Confidence 33355688999999999999875 8889999999999999999888876 5999999999999 8999999999999
Q ss_pred EEEEeCC-CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 352 VRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 352 i~vwd~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+++||.+ .|....+.+|...+..+.|+|+|++++.|+.|..+++||+..++.... ...|...+.++.|+|..
T Consensus 136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCchh
Confidence 9999999 566666778999999999999999999999999999999987775332 22345788999999996
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
.+++.|+.|++|++||+++....-.+......|.+..|+|+++.+++|...
T Consensus 209 -~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 -VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 889999999999999998766666666668899999999999999988654
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=6.1e-20 Score=185.29 Aligned_cols=226 Identities=14% Similarity=0.168 Sum_probs=163.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeE
Q 006424 212 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 291 (645)
Q Consensus 212 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 291 (645)
+..+++++.|+.|++||+.++ +.+..+.+|. .+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~-~~~ 34 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQ-RPR 34 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCC-CCC
Confidence 357889999999999999763 3345555443 367
Q ss_pred EEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEeCCCCcEEEeecc
Q 006424 292 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV 368 (645)
Q Consensus 292 ~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~ 368 (645)
+++|+|++ .+ ++++.++.|++||..+++....+.....+..++|+| +++.+++ ++.++.+++||+++.+.+.....
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 89999987 44 567788999999999998877765444567889999 7776655 45689999999998877665555
Q ss_pred CCCeEEEEEccCCCEEEEEecCC-eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE-EEEECCCeEEEE
Q 006424 369 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI-MITSEDSKLRIL 446 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l-~~~s~dg~I~iw 446 (645)
...+.+++|+|+|++++++..++ .+.+||..+...... .. . .....++.|+|+| .++ +++..++.|++|
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADG-KELWVSSEIGGTVSVI 184 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCC-CEEEEEcCCCCEEEEE
Confidence 55678999999999999988775 467788876543221 11 1 1345779999998 555 555569999999
Q ss_pred ECCcce--eeEeecC-----CCCCeEEEEEecCCCEEEE-EeCCccEEEEeCCCC
Q 006424 447 DGVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~~~~--~~~~~~~-----~~~~i~~v~~sp~~~~l~t-~s~dg~I~iwd~~~~ 493 (645)
|..... ..+.... .......++|+|++++++. .+.++.|.+||+.++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 987542 2222111 1112356889999998655 455778999998765
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=2.9e-21 Score=187.84 Aligned_cols=261 Identities=17% Similarity=0.289 Sum_probs=208.4
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|..-|.++..|...+++.||+. |.|+|||+.... +.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg------------------------------------------~k 453 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG------------------------------------------NK 453 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC------------------------------------------CC
Confidence 58888999999999999999987 459999997521 12
Q ss_pred CCceeecc--CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 278 SPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 278 ~~~~~l~~--h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.++..+.. ....|.++...||+ .|++|+.-.++.|||+....+.-..+ ..-.+++++.+| |.+..+++..||.
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn 532 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN 532 (705)
T ss_pred CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence 23333332 45678999999998 89999999999999997655433222 233678899999 9999999999999
Q ss_pred EEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|.|||++...++. +.+|.+.+.||.+++||..|.+|+-|++|+-||++....... ..+ ...|.++.++|.+
T Consensus 533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG 604 (705)
T ss_pred EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence 9999999877665 889999999999999999999999999999999998765432 111 2679999999998
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 510 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 510 (645)
.++++|-..+.+.|...... ..+..+.|...|.++.|++.|+++++.+.|.-+..|...-+....+......+.++.+
T Consensus 605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI 682 (705)
T KOG0639|consen 605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 682 (705)
T ss_pred -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence 89999999999999986543 4566667999999999999999999999999999999987754444433333333333
Q ss_pred ec
Q 006424 511 FS 512 (645)
Q Consensus 511 ~~ 512 (645)
+.
T Consensus 683 S~ 684 (705)
T KOG0639|consen 683 SF 684 (705)
T ss_pred cc
Confidence 33
No 137
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.3e-21 Score=182.01 Aligned_cols=263 Identities=19% Similarity=0.275 Sum_probs=196.0
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+.+..+.+.+|.++|+++.||.++++|++|+.|..+++|++...-.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------------------------- 90 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------------------------- 90 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------------------------
Confidence 3445667889999999999999999999999999999999875210
Q ss_pred CCCceeccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC---cEEEEEEeeCCCCEE
Q 006424 269 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF 343 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~v~~l~~~p~~~~~l 343 (645)
....+++.... .|...|.|++|...+ .+++|+.+++|...|+++.+.+..+.|.. .|+.+..+| ..+.|
T Consensus 91 -----~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~ 164 (609)
T KOG4227|consen 91 -----RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL 164 (609)
T ss_pred -----hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence 00134555444 456899999998766 89999999999999999999999998665 999999999 68999
Q ss_pred EEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 344 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
++.+.++.|.+||.+... ++..........++.|+|.. .+|++.+..+-+-+||.+....+..............
T Consensus 165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~ 244 (609)
T KOG4227|consen 165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN 244 (609)
T ss_pred EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence 999999999999998644 44455667788999999955 5788889999999999987665543222111111112
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeec------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
..-.++.|+|+| ..+++--....-.+||+-. ....++.. -+...+.+++|.-| ..+++|+++-.|++|.+.
T Consensus 245 ~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 245 TEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecC
Confidence 334678899998 5566655555556677543 33333332 12335677888655 449999999999999986
Q ss_pred CC
Q 006424 492 EL 493 (645)
Q Consensus 492 ~~ 493 (645)
..
T Consensus 323 ~~ 324 (609)
T KOG4227|consen 323 RA 324 (609)
T ss_pred CC
Confidence 54
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-21 Score=185.63 Aligned_cols=232 Identities=18% Similarity=0.205 Sum_probs=184.6
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-.++|.|++-+|+|.+|+.|+..|.+++|.+.+ +.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss---------------------------------------------G~ 114 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS---------------------------------------------GI 114 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc---------------------------------------------cc
Confidence 457899999999999999999999999999998 56
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---------CCeEEEEec-CCCcEEEEEEeeC-CCCEEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG 346 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---------~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~ 346 (645)
.+..+.+|-..|+|+.|+.|+ +++|||.||.|.+|++. +-++...+. |.-+|+.+...+. ...+++++
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 677888999999999999988 99999999999999862 234556664 8889999988762 34589999
Q ss_pred eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-----EEeec----cccccC
Q 006424 347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----KVDFH----DRKKTS 417 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~~~----~~~~~~ 417 (645)
|.|.++++||+..+.++.....+..+++++.+|.++.+++|+.+|.|.+.++........ ..... ....+|
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 999999999999999999888899999999999999999999999999988764431110 00000 001223
Q ss_pred C--CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE
Q 006424 418 G--NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI 476 (645)
Q Consensus 418 ~--~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l 476 (645)
. ..|+|++.+-|| .+|++|+.||.|+|||.......-......++|+.+.+.|-.+-.
T Consensus 275 ~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 275 ENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred cCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccce
Confidence 3 499999999998 899999999999999976432222222257789999886654333
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1.6e-21 Score=189.65 Aligned_cols=238 Identities=22% Similarity=0.367 Sum_probs=200.4
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-...|.++...|||+.|++|+.-.++.|||+..... .
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-------------------------------------------r 500 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-------------------------------------------R 500 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCc-------------------------------------------c
Confidence 346799999999999999999999999999986321 1
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
....+..-.-...+++.+||. ..++|..||.|.|||+.+...++.|. |.+.+.||..++ +|..|-+|+.|.+|+.||
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence 112233334457788889986 78899999999999999999999885 999999999999 999999999999999999
Q ss_pred CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
+++++........+.|.++.++|.+.++++|-.++.+.+........ .. ++. |..-|.++.|.+.| +++++
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yq--lhl----heScVLSlKFa~cG-kwfvS 650 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQ--LHL----HESCVLSLKFAYCG-KWFVS 650 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--ee--ecc----cccEEEEEEecccC-ceeee
Confidence 99999888778888999999999999999999999988877665432 12 222 24789999999998 89999
Q ss_pred EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
.+.|+.+..|..--....|... ....|.++.+|.|.++|+||+.|....+|.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999876555566654 5678999999999999999999998888865
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5e-21 Score=170.41 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=168.4
Q ss_pred ccccccccccCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 191 YTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+..+|.||+++|+.++|-. .|.+||+++.||.|.||.-.+++
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~----------------------------------- 91 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR----------------------------------- 91 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-----------------------------------
Confidence 46778999999999999975 79999999999999999987742
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCC-e-EEE--EecCCCcEEEEEEeeCC--
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN-Q-CLN--VFDHHNYVTCVQFNPID-- 339 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~-~-~~~--~~~~~~~v~~l~~~p~~-- 339 (645)
.........|...|++++|.|.+ .|++++.||.|.|.+.+.. . ... .+.|.-.|++++|.|..
T Consensus 92 --------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 92 --------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred --------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 23455677899999999999874 6889999999999998654 1 222 22488899999999831
Q ss_pred C-----------CEEEEEeCCCcEEEEeCCCCc---EEEeeccCCCeEEEEEccCC----CEEEEEecCCeEEEEEecCC
Q 006424 340 D-----------NYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 340 ~-----------~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g----~~l~~g~~dg~i~iwd~~~~ 401 (645)
+ +.|++|+.|..|+||+...++ -..+.+|.+.|+.++|.|.- .+|+++++||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 469999999999999998853 23378899999999999953 48999999999999998744
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424 402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 448 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~ 448 (645)
..+.+...++. ....+..++|+..| +.|++++.|+.|.+|--
T Consensus 244 ~e~wk~tll~~----f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 YEPWKKTLLEE----FPDVVWRVSWSLSG-NILAVSGGDNKVTLWKE 285 (299)
T ss_pred cCccccccccc----CCcceEEEEEeccc-cEEEEecCCcEEEEEEe
Confidence 33222111121 23679999999998 89999999999999973
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.6e-20 Score=179.94 Aligned_cols=262 Identities=15% Similarity=0.202 Sum_probs=197.4
Q ss_pred cccccccccccCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg--~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
.......+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+...
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------------------------------- 222 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------------------------------- 222 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---------------------------------
Confidence 34455667899999999999964 5899999999999999963211
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCE
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~ 342 (645)
+...+..+..|..+|.++.|+|.+ .+++.|+||+|++-|++.+..-..+. .......+.|+. +...
T Consensus 223 --------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~ 293 (498)
T KOG4328|consen 223 --------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRS 293 (498)
T ss_pred --------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCcc
Confidence 133456778899999999999875 89999999999999998765443332 344677888887 6666
Q ss_pred EEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeee-EEeeccccccCC
Q 006424 343 FISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSG 418 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~ 418 (645)
++.+..=|...+||++++.. ..+.-|...|++++++|-. .+|++++.|++.+|||++....... .+. ...|.
T Consensus 294 vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls----t~~Hr 369 (498)
T KOG4328|consen 294 VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS----TLPHR 369 (498)
T ss_pred EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----ccccc
Confidence 66677667999999998654 3456677799999999955 5789999999999999986544332 111 22345
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECC------cceeeEeecC-C--CCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGV------DVIHKFKGLP-K--SGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~-~--~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
..|.++.|||.+.. |++.+.|..|+|||.. .+..++.... + .-......|.|+..++++|-.-..|-|+|
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 78999999999854 9999999999999973 1222222110 1 11344568999999999999999999999
Q ss_pred CCCCCcCCC
Q 006424 490 YDELCFPSS 498 (645)
Q Consensus 490 ~~~~~~~~~ 498 (645)
-..++....
T Consensus 449 ~~~~q~v~e 457 (498)
T KOG4328|consen 449 GNGGQMVCE 457 (498)
T ss_pred CCCCEEeee
Confidence 888864443
No 142
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.8e-20 Score=176.54 Aligned_cols=202 Identities=24% Similarity=0.358 Sum_probs=167.0
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---- 359 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~---- 359 (645)
-.++|.+++-+|+| +|+.|+-.|.+++|.+.+|..+..+. |-..|+|+.|+- |+.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 46789999999999 55566699999999999999988885 888999999999 999999999999999998632
Q ss_pred ------CcEEEeeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 360 ------KRVVDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 360 ------~~~~~~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
.....+..|.-+|+.+...+.| .++++++.|.++++||+..+..... +.++ ..+.+++.+|.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-i~fp-------~si~av~lDpae- 229 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-ITFP-------SSIKAVALDPAE- 229 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-EecC-------CcceeEEEcccc-
Confidence 2244578899999999987753 5899999999999999998876433 3333 679999999997
Q ss_pred cEEEEEECCCeEEEEECCc------------------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 432 QRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
..+++|+.+|.|.+.++.. ....+.++.....|++++++-||.+|++|+.||.|+|||+.+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 8999999999999987432 1223344333459999999999999999999999999999887
Q ss_pred CcCC
Q 006424 494 CFPS 497 (645)
Q Consensus 494 ~~~~ 497 (645)
+...
T Consensus 310 Q~iR 313 (476)
T KOG0646|consen 310 QCIR 313 (476)
T ss_pred HHHH
Confidence 6433
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.7e-20 Score=171.70 Aligned_cols=264 Identities=17% Similarity=0.126 Sum_probs=175.2
Q ss_pred EEEEEeCCCcEEEEeCCCCc-------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424 342 YFISGSIDGKVRIWGVCEKR-------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
.|++|+....|.-+++.-.. ...+..|.+.+++++. ++.++++|+.|-+|++||++.........
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 36677777777777654221 2335678899999997 48999999999999999998766433222
Q ss_pred eeccccccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424 409 DFHDRKKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i 487 (645)
.|.+.|+++.|.+.- ...|++|+.||.|.+|+.......-....|.+.|+.++.+|.+++-++.+.|+.++.
T Consensus 81 -------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 81 -------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred -------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence 235899999999873 138999999999999998865444444457888999999999999999999999999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC--ccccCcccc
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE--RFSLGSWFS 565 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~fs 565 (645)
||+-.+............ ..+.|+|.|.+.+....+.+ -+|.... ...+.... -...+.-|-
T Consensus 154 WNLV~Gr~a~v~~L~~~a-----------t~v~w~~~Gd~F~v~~~~~i----~i~q~d~-A~v~~~i~~~~r~l~~~~l 217 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNKA-----------TLVSWSPQGDHFVVSGRNKI----DIYQLDN-ASVFREIENPKRILCATFL 217 (362)
T ss_pred ehhhcCccceeeccCCcc-----------eeeEEcCCCCEEEEEeccEE----EEEeccc-HhHhhhhhccccceeeeec
Confidence 999888533322222221 23667777775554444322 1222211 11111111 113333344
Q ss_pred CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCcc-CCCCcceEEEEecCCCeEeEEEecCc
Q 006424 566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRA-ISATWGLVIVTAGCDGMIKTFHNYGL 641 (645)
Q Consensus 566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~ivt~s~Dg~Iriw~~~g~ 641 (645)
..+ .++++.. ++.|..||..... +......|....-... +..+++.+|+|+|.||.|+||++...
T Consensus 218 ~~~-~L~vG~d-~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 218 DGS-ELLVGGD-NEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCc-eEEEecC-CceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 444 4444444 7899999988761 1223334444333333 33557899999999999999998765
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=4.4e-20 Score=185.06 Aligned_cols=249 Identities=18% Similarity=0.282 Sum_probs=181.9
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
...|.+.|..+.|-|....|++++.|.++++||++.....
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------------------------- 135 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------------------------- 135 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee----------------------------------------
Confidence 4579999999999996669999999999999999874321
Q ss_pred cCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeE--------------------EEEe--------c
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNVF--------D 325 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~--------------------~~~~--------~ 325 (645)
-...+.||.+.|.+++|.+.+ .+++|+.||.|.|||++.... .... .
T Consensus 136 ---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 136 ---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ---cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 123477999999999999875 899999999999999864320 0000 1
Q ss_pred CCC----cEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCcEEE---------eecc---CCCeEEEEEccCCCEEEEEe
Q 006424 326 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 326 ~~~----~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~---------~~~~---~~~v~~l~~sp~g~~l~~g~ 388 (645)
+.. .|+.+.|- |+..||+++. |+.|+|||++...... +..+ ...+.++.....|.++++.+
T Consensus 213 ~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 222 34455554 8889999988 9999999998754322 1222 33577888888899999999
Q ss_pred cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEE
Q 006424 389 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSA 467 (645)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v 467 (645)
.|+.|++|++.......... +.+.. ....-..-..+|++ .++++|+.|...++|.+..+.... ....|...|+++
T Consensus 291 tD~sIy~ynm~s~s~sP~~~-~sg~~--~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAE-FSGKL--NSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV 366 (720)
T ss_pred cCCcEEEEeccccCcCchhh-ccCcc--cceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence 99999999998765533211 11110 01122234578887 899999999999999987543322 223488899999
Q ss_pred EEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424 468 SFTTTG-KHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 468 ~~sp~~-~~l~t~s~dg~I~iwd~~~~ 493 (645)
+|.|.. .-++|+++|.+++||++.++
T Consensus 367 ~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 367 RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeccccCCCceeeccCcceEEEeccCc
Confidence 998743 45777799999999999765
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=8.8e-20 Score=176.27 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=171.6
Q ss_pred CceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeE----EEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 279 PLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~----~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
......-|.+.|++++|+|. ..+++|+.-|+|-+||+.+.+. +..+ .|..+|.++.|+|.+...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 34556678999999999985 3788999999999999953221 2333 58899999999998889999999999
Q ss_pred cEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 351 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 351 ~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
+|++-|+++..... .......+.++.|+.+...++.+..=|...+||++........+.++. ..|++++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N 331 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN 331 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence 99999998865433 333456788899999888888898888999999998887666555554 589999999
Q ss_pred CCCCcEEEEEECCCeEEEEECCccee----eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
|..+.++++++.|++.+|||+++... .+....|...|.++.|||.+..|+|.+.|..|+|||..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99889999999999999999884322 35556799999999999999889999999999999984
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=6e-20 Score=170.33 Aligned_cols=292 Identities=18% Similarity=0.273 Sum_probs=210.7
Q ss_pred ccccccccCcEEEEEECC-----CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 193 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fsp-----dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
.+....|..+|..++|++ +...+|++|.+ .+.+|.......
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~--------------------------------- 76 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG--------------------------------- 76 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc---------------------------------
Confidence 344568999999999985 23467777665 588888764210
Q ss_pred cCCCceeccCCCceeec--cCccCeEEEEEcC---C-C-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCC
Q 006424 268 IPDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID 339 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~---~-~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~ 339 (645)
...++.+. .|......++|+- + + +++.|+.-|.|+|.|+.++++...+ +|...|+.+.++|..
T Consensus 77 ---------ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 77 ---------IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR 147 (385)
T ss_pred ---------eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence 01122221 3677788888873 2 3 8999999999999999999998877 599999999999988
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee---------
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------- 406 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~--------- 406 (645)
.++++++|.|..|++|++++..++. ..+|.+.|.++.|+++|.++++++.|.++++|++...+....
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 8999999999999999999999887 457899999999999999999999999999999984332111
Q ss_pred ----------EEeecc--ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----------------eeeEeec
Q 006424 407 ----------KVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----------------IHKFKGL 458 (645)
Q Consensus 407 ----------~~~~~~--~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----------------~~~~~~~ 458 (645)
...+.. ....|...|-|+.|-- .++++-+-++.|..|...+. ...+...
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 011111 2233556666777764 48899899999999975211 1112221
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
...-.-...+|+|-++.||.|...|.|++||++....+... ...+--....+...+|+.|+..|...++++.
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT------TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc------eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 11222334566778999999999999999999987543211 1111112345778899999999998888754
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.4e-21 Score=193.53 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=186.4
Q ss_pred eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
+..|...|.++..-..+ .+++|+.|..+-+|.+.....+..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence 44588888888874444 7889999999999999877777664 6999999999999 8999999999999999999987
Q ss_pred cEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 361 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 361 ~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
+.+ .+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+...+... +. .|...+.++.|+|+| .+++.++.
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~---~~----s~~~vv~~l~lsP~G-r~v~~g~e 174 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT---YK----SHTRVVDVLRLSPDG-RWVASGGE 174 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee---ec----CCcceeEEEeecCCC-ceeeccCC
Confidence 755 4789999999999999999999999999999999996555322 11 245778999999998 89999999
Q ss_pred CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424 440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 519 (645)
Q Consensus 440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 519 (645)
|..++|||+......-....|.+.+..+.|+|..-++++||.|+++++||+++-+........ -..+.+.
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----------~~~v~~~ 244 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----------TDGVRSL 244 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------cCCceee
Confidence 999999998644333333348899999999999999999999999999999865432222111 1234567
Q ss_pred ecCCCCccccccCCCCc
Q 006424 520 QWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 520 ~~s~~~~~l~~~~~~~~ 536 (645)
+|+|++..+.+.....+
T Consensus 245 ~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 245 AFNPDGKIVLSGEQISL 261 (825)
T ss_pred eecCCceeeecCchhhh
Confidence 77777776665444433
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.4e-18 Score=159.93 Aligned_cols=257 Identities=18% Similarity=0.250 Sum_probs=185.2
Q ss_pred ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEe-cCCCcEEEEEEee-CCCCEEEEEeCCCcEEEEe
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~-~~~~~v~~l~~~p-~~~~~l~s~s~dg~i~vwd 356 (645)
.+|.+-|.++.|...| ++++|+.|++|+|||.+... +.... .|.+.|..+.|.+ .-|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3789999999999887 89999999999999975432 33333 3899999999954 4578999999999999997
Q ss_pred CCC----------CcEEEeeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEee-------ccccccC
Q 006424 357 VCE----------KRVVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDF-------HDRKKTS 417 (645)
Q Consensus 357 ~~~----------~~~~~~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~ 417 (645)
-.. .+...+...+..|+.++|.| -|-.+|+++.||.++||+.....- .....+ ......+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence 521 12334667788999999999 467899999999999998754321 111111 1122234
Q ss_pred CCCeEEEEEcCC--CCcEEEEEECC-----CeEEEEECCc----ceeeEeecCCCCCeEEEEEecCC----CEEEEEeCC
Q 006424 418 GNKITGIQFSRD--ESQRIMITSED-----SKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD 482 (645)
Q Consensus 418 ~~~i~~i~~s~~--g~~~l~~~s~d-----g~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~d 482 (645)
..+..|+.|+|. ...+|++|+.+ +.++||...+ ....-....+..+|+.++|.|+- ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 567889999975 23577887776 5889997543 23333345689999999999963 579999999
Q ss_pred ccEEEEeCCCCCcCC---------CcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 483 CRVYVWNYDELCFPS---------SKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 483 g~I~iwd~~~~~~~~---------~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
| |+||.+....... ....-.+..+..+. |++.+..+.|+-.|..|.+.++|+. ++.|..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~---VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC---VRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce---eeehhh
Confidence 9 9999998533111 11111222222233 7789999999999999999988855 556665
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=3e-19 Score=162.79 Aligned_cols=297 Identities=14% Similarity=0.167 Sum_probs=211.2
Q ss_pred cccccceecccccccccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhccc
Q 006424 75 NRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRN 154 (645)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (645)
.--.+|.++..|...++...+-+.|.-+..|||.++-+|...++++++..-+. ..+
T Consensus 35 slK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s-----~s~------------------- 90 (370)
T KOG1007|consen 35 SLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTS-----DSG------------------- 90 (370)
T ss_pred ccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccC-----CCc-------------------
Confidence 33455888999988888889999999999999999999998887777655000 000
Q ss_pred chhhccccCCCCCCCCccchhHhhhcccccccccccccccccc-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 006424 155 VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 233 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~ 233 (645)
.-....++..++.........+..+..|. .|-+.|.|+.|.|++..||+-. |..|.+|++....
T Consensus 91 --------------vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess 155 (370)
T KOG1007|consen 91 --------------VLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESS 155 (370)
T ss_pred --------------ceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCc
Confidence 00001111111111122333344445554 5777999999999999998876 7789999998743
Q ss_pred eeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC--CCeEEEEeCCCcEE
Q 006424 234 ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVR 311 (645)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~l~s~s~dg~I~ 311 (645)
...... +...-.+|....++-+|+| ++.-+....|+++.
T Consensus 156 ~~vaev---------------------------------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 156 KIVAEV---------------------------------------LSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred chheee---------------------------------------cccccccccceecccccCCCCccceEEEeCCCcEE
Confidence 311000 0011112566778889997 45556666789999
Q ss_pred EEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccC-CCEEEE
Q 006424 312 MWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIV 386 (645)
Q Consensus 312 iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~-g~~l~~ 386 (645)
.||+++..+...+. |...|..+.|+|+...+|++|+.||.|++||.+..+ +..+.+|...|.++.|+|. .+++++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988887775 888999999999667789999999999999998744 5568899999999999995 568889
Q ss_pred EecCCeEEEEEecCCceeee-----------------E-Eeec----cccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 387 GSITGTCHFYKASGNDLKLE-----------------K-VDFH----DRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 387 g~~dg~i~iwd~~~~~~~~~-----------------~-~~~~----~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
|+.|..|.+|....-..... + -.+. .....|...|.+++|+.-.+..+++-+.||++.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 99999999997643221100 0 0011 123446789999999988788999999999998
Q ss_pred EEECC
Q 006424 445 ILDGV 449 (645)
Q Consensus 445 iwd~~ 449 (645)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87654
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.2e-19 Score=173.05 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=168.5
Q ss_pred cccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 196 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 196 l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
-.+|++.|.++.|+.. .+.|||||.|.+|++||+.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~------------------------------------------- 275 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT------------------------------------------- 275 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------------------------------------
Confidence 4579999999999986 45999999999999999998
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
+++..++..|.+.|.++.|+|.. .|++|++|++|.+.|.+.. ..-......+.|..++|.|...+.++++..||+
T Consensus 276 --g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 276 --GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred --CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence 56677888899999999999874 8999999999999999842 233345677889999999988889999999999
Q ss_pred EEEEeCCCC-c-EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEK-R-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~-~-~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
|+-+|+|.. + +.....|.+.|.++++++.- .++++++.|+.+++|++............. .-+...|.++.|
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-----~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-----KLGRLHCFALDP 428 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc-----cccceeecccCC
Confidence 999999974 3 45578899999999999854 478889999999999998665433211111 114467888888
Q ss_pred CCCcEEEEEECCCeEEEEECCc
Q 006424 429 DESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
+-..+++.|+..+.++|||+..
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred CcceEEEecCccceEEEeeccc
Confidence 8767899999999999999764
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1e-18 Score=159.76 Aligned_cols=245 Identities=16% Similarity=0.259 Sum_probs=181.6
Q ss_pred ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 197 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 197 ~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
.+|+-.|.++.|-| |.-.+.+++-|.++++||..+.+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ------------------------------------------ 135 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ------------------------------------------ 135 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccce------------------------------------------
Confidence 47999999999999 55688999999999999998732
Q ss_pred cCCCceeeccCccCeEEEEEcCC---C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 276 EESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~---~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
....|. .++.|+.-+++|- . ++++|..|-.|++.|+.+|.+.+.+. |.+.|.++.|+|..+-.|++|+.||
T Consensus 136 ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 136 ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 122222 4566777777762 3 67888889999999999999999884 9999999999996677799999999
Q ss_pred cEEEEeCCCC--cEEE--------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424 351 KVRIWGVCEK--RVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 414 (645)
Q Consensus 351 ~i~vwd~~~~--~~~~--------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 414 (645)
.|++||++.. .... -..|.+.++.++|+.+|.++++.+.|..+++|+...+...........+.
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence 9999999753 2211 24566789999999999999999999999999998776544322211111
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
....-.+. +. +-+. ..++.--.++.+.++++.+....-....|...+.+..+-|+-+...+|..|+.|+.|-.
T Consensus 292 ~~~~~~~~-~~-~~~s-~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 292 QTTSFAVH-IQ-SMDS-DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccceEE-Ee-eccc-ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 11111222 22 2221 23444445578888886644433333346778999999999999999999999999986
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.1e-19 Score=170.63 Aligned_cols=251 Identities=16% Similarity=0.273 Sum_probs=191.5
Q ss_pred ccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+.--..+|.+++|.|+|. .+++++....+..||+.+.+.
T Consensus 252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~--------------------------------------- 292 (514)
T KOG2055|consen 252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV--------------------------------------- 292 (514)
T ss_pred eeeeccCccceeeecCCCceEEEecccceEEEEeecccccc---------------------------------------
Confidence 3434467899999999999 999999999999999987432
Q ss_pred eccCCCceeeccCc-cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 274 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 274 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
..+..+.|+. ..+.....++++ +|+..+..|.|.+....+++.+..+...+.|..++|+. +++.|++++.+|.
T Consensus 293 ----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 ----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGE 367 (514)
T ss_pred ----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCce
Confidence 1223333443 345566677876 89999999999999999999999999999999999998 8899999889999
Q ss_pred EEEEeCCCCcEEEeeccCCCe--EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVVDWADVRDVI--SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v--~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
|.+||++...++......+.| +++|.+++|.+||+|+..|.|.|||..+.......-... ....-...|++++|+++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik-~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK-TVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh-hhhhhheeeeeeeeCcc
Confidence 999999999888765555554 467778999999999999999999965432211100000 01112367999999999
Q ss_pred CCcEEEEEEC--CCeEEEEECCccee--eEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 430 ESQRIMITSE--DSKLRILDGVDVIH--KFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 430 g~~~l~~~s~--dg~I~iwd~~~~~~--~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
. ++|+.+|. +..+++-.+..+.. -+. ....-+.|+|++|||.+.++|.|..+|++.+|.+.
T Consensus 447 ~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 A-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred h-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 7 88888775 57788887653221 111 12244679999999999999999999999999874
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=168.66 Aligned_cols=208 Identities=20% Similarity=0.375 Sum_probs=162.6
Q ss_pred cccccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 188 TALYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 188 ~~~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.....+.++.+|.+.=+.++|||- ...|+||.--+.|++|...++.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--------------------------------- 245 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--------------------------------- 245 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc---------------------------------
Confidence 445567788999999999999993 2368888888889999987732
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCC---eEEEEecCCCcEEEEEEeeCCCC
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~v~~l~~~p~~~~ 341 (645)
|.++. ..+.+|+..|-.|+|||. +.|+|||.||+|+|||++.+ .++..-.|.+.|+.+.|+. ...
T Consensus 246 ------W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~ 315 (440)
T KOG0302|consen 246 ------WKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REP 315 (440)
T ss_pred ------eeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccc
Confidence 22222 345679999999999985 59999999999999999988 4555556999999999998 666
Q ss_pred EEEEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCce-------------
Q 006424 342 YFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL------------- 403 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~------------- 403 (645)
+|++|+.||+++|||++.-+ +..+..|..+|+++.|+|. ...|++++.|..|.+||+....-
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~ 395 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ 395 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh
Confidence 99999999999999998744 3368889999999999994 55888899999999999963321
Q ss_pred --eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424 404 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 442 (645)
Q Consensus 404 --~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~ 442 (645)
+...+-.|.. ...+..+.|++.-+-++++.+.||-
T Consensus 396 dlPpQLLFVHqG----Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 396 DLPPQLLFVHQG----QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCCceeEEEecc----hhHhhhheeccCCCCeEEEecccce
Confidence 1111111211 2567788999987778888888873
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.5e-20 Score=196.63 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=197.2
Q ss_pred CcEEEEEECCCCCE----EEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 201 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~~----L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
...+.++|.+.|.. ||.|..||.|.+||...... ...
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~ 105 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS 105 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence 35678999987765 89999999999999875100 002
Q ss_pred CCCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 277 ESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
...+..+..|++.|..+.|++. + .|++|+.||.|.|||+..-+.-..+ ...+.|.+++|+....++|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 3456677789999999999985 3 8999999999999999875544444 256789999999867788999999999
Q ss_pred EEEEeCCCCcEE-Eeecc--CCCeEEEEEccCCC-EEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 352 VRIWGVCEKRVV-DWADV--RDVISAICYIPDGK-GFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 352 i~vwd~~~~~~~-~~~~~--~~~v~~l~~sp~g~-~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
+.|||++..+.+ .+..+ +..+..+.|+|+.. .+++++.|. .|.+||++....+...... |...|.++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~------H~~Gilsl 259 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG------HQRGILSL 259 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc------cccceeee
Confidence 999999987543 34333 34578999999764 666666553 6999999987776554433 34789999
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~ 494 (645)
.|++.+..++++++.|++|.+|+.++............++..+.|+|... .++.++-||.|-|+.+.+..
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99998878999999999999999887555555555778999999999776 78888899999999998765
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.9e-19 Score=161.91 Aligned_cols=289 Identities=11% Similarity=0.131 Sum_probs=195.1
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424 290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 367 (645)
..|+.|++.| +|+.|+.||.|.|||+.+...-+.+. |-.+|++++|++ +|+.|+++|.|..|.+||+..+.+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999988 89999999999999999988777775 999999999999 99999999999999999999999999889
Q ss_pred cCCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 368 VRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
...+|....|+|..+. +++.-.+..-.+.++........ . ............+..|.+.| .++++|...|.+.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p-~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--P-KDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY 180 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--c-CCCccccccccccccccCCC-CEEEEecCcceEEEE
Confidence 9999999999995543 33333344455555554322211 1 11111111223344688887 899999999999999
Q ss_pred ECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc-cCCcceeeeeecCCcEEEEecCC
Q 006424 447 DGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPG 523 (645)
Q Consensus 447 d~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~s~ 523 (645)
|..+. ...++.. ....|..+.++..|++|++-+.|..|+.|++..-....... ..........-..-....++|+.
T Consensus 181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 97743 3344432 23678899999999999999999999999987432110000 00000000000111223455566
Q ss_pred CCccccccCCCCccccCccccccccCC--ccCCCC-ccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424 524 IGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSE-RFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 588 (645)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~-~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~ 588 (645)
+|.++...+ .......+|....+.. .+.+.. .....+.+.|-...++|.. .|.+++|....
T Consensus 260 dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~--sg~v~iw~~~~ 323 (405)
T KOG1273|consen 260 DGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA--SGVVYIWAVVQ 323 (405)
T ss_pred CccEEEecc--ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc--CCceEEEEeec
Confidence 666655443 3334455666543333 223333 3456677778777787764 57899997543
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=6.1e-19 Score=163.68 Aligned_cols=244 Identities=21% Similarity=0.364 Sum_probs=183.8
Q ss_pred ccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 199 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 199 H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
|...-..++|+-| ..+||.||.-|.|+|.|+.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~------------------------------------------- 124 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS------------------------------------------- 124 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-------------------------------------------
Confidence 5566677777653 34899999999999999987
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
++....+.+|...|+.+.++|.. ++++||.|.+|++|++++..++..|+ |.+.|.++.|++ ++.++++++.
T Consensus 125 --~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGm 201 (385)
T KOG1034|consen 125 --GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGM 201 (385)
T ss_pred --hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCC
Confidence 45567888999999999999986 89999999999999999999999995 999999999999 9999999999
Q ss_pred CCcEEEEeCCCCcEE-----------------------------EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 349 DGKVRIWGVCEKRVV-----------------------------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 349 dg~i~vwd~~~~~~~-----------------------------~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
|.++++|++...+.. ...-|...|-|+.|- |+++++-+.++.|..|...
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence 999999999843311 112244445555553 5788998899999999873
Q ss_pred CCceeeeE-------EeeccccccCCCCeEEE--EEcCCCCcEEEEEECCCeEEEEECCcc----eeeEeecCCCCCeEE
Q 006424 400 GNDLKLEK-------VDFHDRKKTSGNKITGI--QFSRDESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMS 466 (645)
Q Consensus 400 ~~~~~~~~-------~~~~~~~~~~~~~i~~i--~~s~~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~i~~ 466 (645)
........ .....+..-....|.-+ +|.|-+ ..|+.|...|.|++||++.. ..++........|..
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ 358 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ 358 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeee
Confidence 11111000 00111111112344444 455665 78999999999999998732 223333445668999
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.+||.|+..|+...+|++|.-||.-
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999999864
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-18 Score=169.01 Aligned_cols=191 Identities=19% Similarity=0.277 Sum_probs=155.6
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc--CCCeEEE
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAI 375 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~v~~l 375 (645)
-++++|+..+.|+|||++...+.+.+ +|.+.|+++.++- ...+||+++..|.|.+..+.++.......+ ...|.-+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 48999999999999999966666666 4999999999998 788999999999999999998876654444 3456789
Q ss_pred EEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424 376 CYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 454 (645)
Q Consensus 376 ~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~ 454 (645)
.|+|..+ +|.+++.+|.|.+||+.+...... -...|..+...|+|+|.+..+|++.+.|..|.+||.+....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s- 243 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS- 243 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccc------hhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-
Confidence 9999777 456688999999999987765322 23345688999999999888999999999999999873222
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
........+...++|+++|.+|+.|+..|.|+.||++..+.+.
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 1122246688999999999999999999999999999875443
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=4.5e-18 Score=171.01 Aligned_cols=233 Identities=19% Similarity=0.319 Sum_probs=180.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.|..++|-|||..|+.+..| .+.+||... +..++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence 79999999999987776655 599999986 66789
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCc-------------------------------
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------------------------------- 329 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------------------------- 329 (645)
++++|.+.|+|++|+.+| .++||+.|+.|.+|+-.-. -+..+.|++.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence 999999999999999998 8999999999999985421 1222334444
Q ss_pred --------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe---eccCCCeEEEEEccCC-----CEEEEEecCCeE
Q 006424 330 --------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW---ADVRDVISAICYIPDG-----KGFIVGSITGTC 393 (645)
Q Consensus 330 --------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~v~~l~~sp~g-----~~l~~g~~dg~i 393 (645)
+.+++|.. ||.+++.|-.||+|.+-+-...+...+ -+..++|.+++|+|.. ..+++..-..++
T Consensus 127 ~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 127 SKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred HhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 44555555 899999999999999987665554443 3467899999999953 478888888889
Q ss_pred EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424 394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
.+|.+.+..... .+.-+....|+++.++| .+++.|+.|+.+.+|... .+..-........|..++..|++
T Consensus 206 SFy~LsG~~Igk--------~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 206 SFYQLSGKQIGK--------DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EEEEecceeecc--------cccCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCC
Confidence 999887654321 11122456789999998 899999999999999743 33333333367799999999999
Q ss_pred CEEEEEeCCccEEEEeCCC
Q 006424 474 KHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~ 492 (645)
++++.|+.||+|-.|++..
T Consensus 276 Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceEEEEEccCeeehhhhHH
Confidence 9999999999999999743
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=164.44 Aligned_cols=234 Identities=22% Similarity=0.354 Sum_probs=182.7
Q ss_pred cccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 196 IQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 196 l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
+.||+++|..++|+| +...+||||.|.+|.||.+.......
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------------------------------------- 118 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------------------------------------- 118 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--------------------------------------
Confidence 679999999999999 56799999999999999987532110
Q ss_pred ccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
.-..++..+.||...|.-++|+|. +.|+|++.|.+|.+||+.+|+.+-.+.|.+.|+++.|+. +|.+|++++.|..|
T Consensus 119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV 197 (472)
T ss_pred CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence 013678899999999999999986 589999999999999999999999999999999999999 99999999999999
Q ss_pred EEEeCCCCcEEEee-ccCC-CeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 353 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 353 ~vwd~~~~~~~~~~-~~~~-~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
+|||.++++++... .|.+ .-..+.|-.+|..+.+|. .+..+-+||..+...+.....+.. .+.|.---|.
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFyD 272 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFYD 272 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeeec
Confidence 99999999988743 4433 345566778888665553 467899999887776654444443 2556666678
Q ss_pred CCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
++.+-..++|-.|+.|+.|.+... .+-+.......+-.++.|-|..
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 886555667778999999997632 3333333345566677776654
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.4e-19 Score=179.43 Aligned_cols=258 Identities=19% Similarity=0.305 Sum_probs=187.7
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
++..|.+.|+.++|+|....|++|+.||++++|+++..... -.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~ 331 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE 331 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence 78889999999999999999999999999999999541100 00
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC------e---EE--EEecCCCcEEEEEEeeCCCCE
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN------Q---CL--NVFDHHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~------~---~~--~~~~~~~~v~~l~~~p~~~~~ 342 (645)
..-.++.+|.+|.++|.|+++.+++ .+++|+.||+|+.|++... . .+ ...+|.+.|+.+++++ ..+.
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence 1246788999999999999999887 8999999999999965321 1 11 1236999999999999 7888
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc---cccC
Q 006424 343 FISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTS 417 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~ 417 (645)
|++++.||++++|+........+.. ..+...++.+.... .+....+.....+++...........+... ....
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR 488 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence 9999999999999987766633322 23344555554322 222222333333333332221111111111 0111
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...+..+.++|.+ .+.+++..|+.|+++|............|...++++++.|+|.+|++++.||.+++|.++..
T Consensus 489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 2457788899987 79999999999999998766666666668899999999999999999999999999998765
No 161
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.9e-18 Score=177.46 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=207.9
Q ss_pred ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
.+|...-+.++|.|+| .|++|+.||.|++|+.... +.-..+. +...|.+++. ..++|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence 3688889999999998 8999999999999988655 4344444 7788888887 5669999999999999999887
Q ss_pred cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
.... +....-++++++|+.+|+++|.|+.|-.|++.++.+...... ...|..+|.++.|+|.+ .+||+.+-
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------lrgh~apVl~l~~~p~~-~fLAvss~ 158 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------LRGHDAPVLQLSYDPKG-NFLAVSSC 158 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-------ecccCCceeeeeEcCCC-CEEEEEec
Confidence 6553 445567899999999999999999999999999987765432 22346899999999998 89999999
Q ss_pred CCeEEEEECCccee--eEee------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 440 DSKLRILDGVDVIH--KFKG------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 440 dg~I~iwd~~~~~~--~~~~------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
||.|++||+.+... .+.+ ......+..++|+|+|..++..+.|+.|++|+..+.........+. +
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-------~ 231 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-------S 231 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------c
Confidence 99999999874322 2221 1124456789999998888888999999999998875443332221 1
Q ss_pred cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424 512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW 584 (645)
Q Consensus 512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW 584 (645)
...+..+.|+|.|.+||+..-+ ..+.+|+... ........-+.+.+|-|+...+-..++ .|...+|
T Consensus 232 -ss~~~~~~wsPnG~YiAAs~~~---g~I~vWnv~t--~~~~~~~~~Vc~~aw~p~~n~it~~~~-~g~~~~~ 297 (933)
T KOG1274|consen 232 -SSKFSDLQWSPNGKYIAASTLD---GQILVWNVDT--HERHEFKRAVCCEAWKPNANAITLITA-LGTLGVS 297 (933)
T ss_pred -ccceEEEEEcCCCcEEeeeccC---CcEEEEeccc--chhccccceeEEEecCCCCCeeEEEee-ccccccC
Confidence 1226788999999999976655 4466787754 112344567888999999886544333 3444444
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.7e-18 Score=170.00 Aligned_cols=291 Identities=18% Similarity=0.167 Sum_probs=200.1
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCcEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRI 354 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~v 354 (645)
......+.||++.|.+++..|.| .|++|+.||+|+||.+.+|.|+.++...+.|.|++|+| .++ -++.+..+..+.+
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P-~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP-LSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC-CCCceeEEEEecCceEE
Confidence 34456788999999999999988 99999999999999999999999999999999999999 443 3333333333444
Q ss_pred EeCCCC--------------------------------------cEEEeeccCCCeEEEEEccCCCEEEEEecC---CeE
Q 006424 355 WGVCEK--------------------------------------RVVDWADVRDVISAICYIPDGKGFIVGSIT---GTC 393 (645)
Q Consensus 355 wd~~~~--------------------------------------~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i 393 (645)
.+..-| -+.....|...|..+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 432111 012345677889999999999999997664 468
Q ss_pred EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424 394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
.|+++....... .+. ...+.+.++.|+|.. .+|++++. ..|+|||+......-+.......|..++.+|.|
T Consensus 549 liHQLSK~~sQ~---PF~----kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 549 LIHQLSKRKSQS---PFR----KSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred EEEecccccccC---chh----hcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 888887554321 121 123779999999996 45555553 579999987544333444467789999999999
Q ss_pred CEEEEEeCCccEEEEeCCCCCcCCCc--ccCCcceeeeeecCCcEEEEecCCCCccccc---cCCCCccccCcccccccc
Q 006424 474 KHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS---LCSSSLRDCSQKWDNLET 548 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~---~~~~~~~~~~~~w~~~~~ 548 (645)
.-|+.|+.|+.+..+|++-...+.+. +.......+.||+.-+..+.+ ++||..++. ...|-+..-. +-.
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfhg~VY~Dl~qnpl-----iVP 693 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFHGMVYNDLLQNPL-----IVP 693 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEeeeeehhhhcCCc-----eEe
Confidence 99999999999999999876433322 222333334555555554444 333333221 1122111100 112
Q ss_pred CCccCCCCcc----ccCccccCCCCCCcCCCCCCCcCCCC
Q 006424 549 APWIRDSERF----SLGSWFSNDGPCRGSATWPAEKLPLW 584 (645)
Q Consensus 549 ~~~~~~~~~~----~~~~~fs~dg~~l~s~s~~d~~i~iW 584 (645)
...+++|... +....|.|.-.++.||.. ++.|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-d~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-DGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCC-CceEEee
Confidence 2345555544 777889999999999988 8999998
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.3e-16 Score=168.52 Aligned_cols=371 Identities=23% Similarity=0.332 Sum_probs=244.5
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+..|...|.++.|.+.+..++.++.|+.+.+|+.....
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------------------------- 98 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----------------------------------------- 98 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence 466899999999999999999999999999999988632
Q ss_pred ccCCCceeeccCc-cCeEEEEE-cCCC--eEEEEeC-CCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 275 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCSM-DKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 275 ~~~~~~~~l~~h~-~~V~~l~~-s~~~--~l~s~s~-dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
.....+.++. ..+..+.+ ++++ .++..+. |+.+.+||... ......+ .|...|.+++|+| ++..+++++
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 174 (466)
T COG2319 99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS 174 (466)
T ss_pred ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence 1233444433 36666666 6554 3444444 99999999997 5554444 5889999999999 888888888
Q ss_pred C-CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 348 I-DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 348 ~-dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
. |+.+++|++..+.... +..|...+.+++|+|++. .+++++.|+.+++||.......... ... |.... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~--~~~----~~~~~-~~ 247 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST--LSG----HSDSV-VS 247 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee--cCC----CCcce-eE
Confidence 5 9999999999755544 556899999999999998 5555589999999987744332211 121 22332 22
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 503 (645)
.|++++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+...........
T Consensus 248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 323 (466)
T COG2319 248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--- 323 (466)
T ss_pred eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---
Confidence 899997 7888999999999999874332 22224578899999999999999999999999999887664222211
Q ss_pred cceeeeeecCCcEEEEecCCCCcccccc-CCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCcCCCCCCCcC
Q 006424 504 VRSCEHFFSEGVSVAVQWPGIGTEQKSL-CSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKL 581 (645)
Q Consensus 504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~-~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i 581 (645)
...+.+.+..+.|.+++..+... ..+ ..+..|....... ........+..+.+++ .....+....++.+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (466)
T COG2319 324 -----LKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTV 394 (466)
T ss_pred -----ecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCce
Confidence 11223345555553222333333 222 2233344433331 1111111166777877 53333312237789
Q ss_pred CCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424 582 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG 640 (645)
Q Consensus 582 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g 640 (645)
.+|+....... .................++..+++++.++++++|+...
T Consensus 395 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 395 RLWDLSTGSLL----------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecccCeee----------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99998877211 11111101111122234688899999999999999764
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=1e-18 Score=170.08 Aligned_cols=215 Identities=16% Similarity=0.264 Sum_probs=174.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
+|.|..+ ..|+++|+..+.|+|||++. ....+
T Consensus 84 Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~---------------------------------------------kl~hr 115 (673)
T KOG4378|consen 84 CVACASQ---SLYEISGGQSGCVKIWDLRA---------------------------------------------KLIHR 115 (673)
T ss_pred HHhhhhc---ceeeeccCcCceeeehhhHH---------------------------------------------HHHhh
Confidence 3444444 48999999999999999985 34457
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
.+++|...|+++.|+... +|++++..|.|.|..+.++.....|.+. ..|+-+.|+|....+|.+++.+|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 788999999999998654 9999999999999999999988888754 4677999999666678899999999999998
Q ss_pred CCcEEE--eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 359 EKRVVD--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 359 ~~~~~~--~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
+..... ...|..+...+||+|. ..+|++.+.|..|.+||.+.... ...+.+ ..+.+.++|+++| .+|+
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~y-------~~Plstvaf~~~G-~~L~ 266 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLTY-------SHPLSTVAFSECG-TYLC 266 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceeee-------cCCcceeeecCCc-eEEE
Confidence 866554 5678889999999995 45788889999999999986543 222322 2678999999998 8999
Q ss_pred EEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCC
Q 006424 436 ITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~ 473 (645)
+|+..|.|..||++.... ....+.|...|++++|-|.-
T Consensus 267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999884322 22234478889999997754
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=153.19 Aligned_cols=280 Identities=20% Similarity=0.275 Sum_probs=190.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
...+.|||||.-|++-+.|..+++|++......... .+.. .........
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~------------~~~~-------------------~~~~~~~~r 100 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------------DGPL-------------------NFSKHLSYR 100 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC------------CCcc-------------------ccccceeEE
Confidence 346889999999999999999999998642111000 0000 000111111
Q ss_pred eccCccCeEEEEEc-------CC-CeEEEEeCCCcEEEEecCCCeEEEEec---CCC---cEEEEEEeeCCCCEEEEEeC
Q 006424 283 LHGHKGDVLDLAWS-------NS-NYLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 283 l~~h~~~V~~l~~s-------~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~---~v~~l~~~p~~~~~l~s~s~ 348 (645)
+ .....|...+|- |+ +++++.+.+.-|++||.-+|+....+. |.. ...+++|+| ||..|++|.
T Consensus 101 ~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy- 177 (406)
T KOG2919|consen 101 Y-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY- 177 (406)
T ss_pred e-ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-
Confidence 1 134567777774 44 388899999999999999999877764 444 456899999 999988765
Q ss_pred CCcEEEEeC-CCCcEEE--------eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 349 DGKVRIWGV-CEKRVVD--------WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 349 dg~i~vwd~-~~~~~~~--------~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
...|++||+ +.++-.. ..+..+-+.+++|+| +.+.+++|+....+-||.-........ +. .|.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---lg----gh~ 250 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---LG----GHG 250 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---ec----ccC
Confidence 689999999 5554221 233467799999999 455899999999988888766554322 12 346
Q ss_pred CCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcceeeE-eecCCC---CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 419 NKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHKF-KGLPKS---GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~~~~~-~~~~~~---~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+.|+.++|.++| +.|++|++ |..|-.||++.....+ ....|. ..-.-....|++++|++|+.||.|++||+++.
T Consensus 251 gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 251 GGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred CCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 899999999998 67777765 7899999988433222 222122 23334556789999999999999999999874
Q ss_pred CcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 494 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
-... .. .-..+..+.+|+++|--..+++++.
T Consensus 330 gn~~--------sv-~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 330 GNEV--------SV-TGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred CCcc--------cc-cccccccccceecCcccceeeeccC
Confidence 2111 11 1112345678888888666665444
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=155.46 Aligned_cols=248 Identities=15% Similarity=0.239 Sum_probs=178.3
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~---------------------------------------- 45 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE---------------------------------------- 45 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecC----------------------------------------
Confidence 345679999999999987774 999999999999999873
Q ss_pred eeccCCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE----------------------------
Q 006424 273 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV---------------------------- 323 (645)
Q Consensus 273 ~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~---------------------------- 323 (645)
.....+. .|...|+.+.--|++.+.+-+.|+.+.+|++.-+..+..
T Consensus 46 -----r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 46 -----RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred -----ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence 3334444 355667777766767777777888888887654211100
Q ss_pred ---------------------e-----cCCCcEEEEEEeeCCCC--EEEEEeCCCcEEEEeCCCCc-----------EEE
Q 006424 324 ---------------------F-----DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKR-----------VVD 364 (645)
Q Consensus 324 ---------------------~-----~~~~~v~~l~~~p~~~~--~l~s~s~dg~i~vwd~~~~~-----------~~~ 364 (645)
. ...+.+.|..+...++. +++.|-++|.+.+||+.++. +..
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 0 01233555554332333 46778889999999998862 223
Q ss_pred eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
...|..+|.++.|.+....=++|+.+..+..|++........ ...........+..+..-||+ +.+++++.|++||
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq---~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiR 276 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ---IRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIR 276 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc---ccceEEecCCCccceEEccCC-cEEeecccCCcEE
Confidence 456888999999998766667788888899998864422111 111111112568889999998 8999999999999
Q ss_pred EEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 445 iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
||+-++.........|...|++++|+|+...+|++|.|++|.+|++
T Consensus 277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9997754333333348899999999999999999999999999986
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=172.48 Aligned_cols=425 Identities=15% Similarity=0.185 Sum_probs=259.8
Q ss_pred ccccccccccCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCccc-----CCCCceEEecccC-C
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-----NAKEGKIKFGKKK-S 261 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~ 261 (645)
...+.|.+|..+++.+.+.|.. .++++++.||.|++||...+......-..-..... ........+.... .
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 3556799999999999998854 47889999999999999876543322211111000 0000011100000 0
Q ss_pred CcceeecCC---Cc--ee---ccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEE-E----ecCCC
Q 006424 262 SHVPVVIPD---EV--FQ---IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-V----FDHHN 328 (645)
Q Consensus 262 ~~~~~~~~~---~~--~~---~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~-~----~~~~~ 328 (645)
......... .. +. ........+..|.. -.++.+++.+.+.....+..+.+|+..++.... . ..|..
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf 206 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTF 206 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcc
Confidence 000000000 00 00 00111112223322 356777777877777778889999998755111 1 13677
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
.++|.+++| +++++++|..||.|.+|.--. ..+..+.-|...|+++.|+++|.+|++|+..|.+.+|.+.++..
T Consensus 207 ~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 207 NITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred cceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence 799999999 999999999999999995322 33555778999999999999999999999999999999998873
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEee---------cCCCCCeEEEEEecC
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKG---------LPKSGSQMSASFTTT 472 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~---------~~~~~~i~~v~~sp~ 472 (645)
... + .-+++|..+.++||+ .+.+....|+.|.+....+.. ....+ ....+-.+.++++|.
T Consensus 286 qfL----P----RLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 286 QFL----P----RLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred ccc----c----ccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 221 1 124899999999997 788888899999998753211 11111 112445678899997
Q ss_pred CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC------cEEEEecCCCCccccccCCC-------Ccccc
Q 006424 473 GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG------VSVAVQWPGIGTEQKSLCSS-------SLRDC 539 (645)
Q Consensus 473 ~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~v~~s~~~~~l~~~~~~-------~~~~~ 539 (645)
-+.++-.+..|.|.+||+-+.......+. +..-..+| .+++++.+-.|..+++...- .....
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v-----~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQV-----CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEE-----EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 78888889999999999976542211110 00011111 24566666667777654321 11334
Q ss_pred CccccccccCC-------ccCCCCccccCccccC-CCC-CCcCCCCCCCcCCCCCCccCC------CCCcCChhhhHhhh
Q 006424 540 SQKWDNLETAP-------WIRDSERFSLGSWFSN-DGP-CRGSATWPAEKLPLWDVTIDS------DGYCQDPQQQRLQQ 604 (645)
Q Consensus 540 ~~~w~~~~~~~-------~~~~~~~~~~~~~fs~-dg~-~l~s~s~~d~~i~iWd~~~~~------~~~~~~~~~~~~~~ 604 (645)
+++|....... ....|+.......|.+ ... ..++++. ++.+++|-.+..+ ....| +...
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c-----~~i~ 505 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTC-----KAIG 505 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEE-----eeee
Confidence 67787744433 2233443333334443 333 6677777 8999999874432 22222 1111
Q ss_pred hhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 605 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 605 ~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
.++........| +.|| .++++|.|++|.+|+-.
T Consensus 506 sy~k~~i~a~~f-s~dG-slla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 506 SYHKTPITALCF-SQDG-SLLAVSFDDTITIWDYD 538 (792)
T ss_pred ccccCcccchhh-cCCC-cEEEEecCCEEEEecCC
Confidence 122222222233 4477 58889999999999843
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=6.2e-18 Score=161.39 Aligned_cols=294 Identities=19% Similarity=0.310 Sum_probs=195.5
Q ss_pred CCCCCCccchhHhhhcccccccc--cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC
Q 006424 165 PNSEKPKANKMEVKQNKKKCMEF--TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD 242 (645)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 242 (645)
...+...+..++.|.-......- ........|..|..+|+++.|+|+|..||||+++|.|.+|........ ..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cc
Confidence 33444444555555443332222 233445678899999999999999999999999999999987641110 00
Q ss_pred CCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE
Q 006424 243 GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL 321 (645)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~ 321 (645)
..-. ............+.+|...|..++|+|++ ++++++.|.++++||+..|+..
T Consensus 103 d~e~------------------------~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 103 DTEA------------------------DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred cchh------------------------hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 0000 00000123356778899999999999997 8999999999999999999999
Q ss_pred EEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec------------------------cCCCeEEEE
Q 006424 322 NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD------------------------VRDVISAIC 376 (645)
Q Consensus 322 ~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------------------------~~~~v~~l~ 376 (645)
..+. |...+..++|.| -++++++-+.|...+.+.+...+.....+ ...-...++
T Consensus 159 ~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 8885 999999999999 88999999999888887775543222111 112255678
Q ss_pred EccCCCEEEEEec----CC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC--------C--------C
Q 006424 377 YIPDGKGFIVGSI----TG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------E--------S 431 (645)
Q Consensus 377 ~sp~g~~l~~g~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~--------g--------~ 431 (645)
|+|+|.++++.+. ++ ..++|+-.....+...+... ..+...+.|+|- . .
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~------~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP------KKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC------CcceEEEEeeeeEEEecccccccccccccc
Confidence 9999999988542 22 23455444333332222111 123333443331 0 0
Q ss_pred cEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+++++....+.|++||.......+.. .-|-..++.++|++||.+|+..|.||...+--++..+
T Consensus 312 rlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 23444444568999998763332221 2378899999999999999999999988877776654
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.6e-19 Score=187.56 Aligned_cols=201 Identities=17% Similarity=0.290 Sum_probs=157.5
Q ss_pred ccCeEEEEEcCC-----CeEEEEeCCCcEEEEecCC---CeEE---EEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 287 KGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGC---NQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 287 ~~~V~~l~~s~~-----~~l~s~s~dg~I~iwd~~~---~~~~---~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
....+.++|.+. |.|+.|..||.|.+||... +... ..+ .|++.|..+.|++..++.||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456778899753 4689999999999999865 2222 222 399999999999977889999999999999
Q ss_pred EeCCCCcEEE---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 355 WGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 355 wd~~~~~~~~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
||+...+.-. .....+.|.+++|+.. ...|++++.+|.+.|||++..+..+. +..... ...+..+.|+|++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-ls~~~~----~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-LSDTPG----RMHCSVLAWHPDH 218 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc-cccCCC----ccceeeeeeCCCC
Confidence 9998744322 2234678999999884 45788889999999999998865443 222211 1457899999998
Q ss_pred CcEEEEEECCC---eEEEEECC---cceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCCC
Q 006424 431 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 431 ~~~l~~~s~dg---~I~iwd~~---~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~ 494 (645)
...+++++.|. .|.+||++ ...+++.+ |...|.++.|++.+ .+|++++.|++|.+|+.++++
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 88888888774 79999987 35555544 88999999999976 899999999999999999874
No 170
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.78 E-value=2.4e-19 Score=167.37 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=252.1
Q ss_pred ccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCc
Q 006424 92 ANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPK 171 (645)
Q Consensus 92 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (645)
.-.|++.++||++.++.....|.+.+ +.+++. |.++|.|+|+...++++++++.+..+....++..+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~------------drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e 79 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEG-VISVSE------------DRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE 79 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCC-eEEccc------------cceeeeEEeccccccCchhhhhCCCCceEeeeecc
Confidence 34588899999999999999999999 999999 99999999999999999999999999999999888
Q ss_pred cchhHhhhcccccccc------cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCc
Q 006424 172 ANKMEVKQNKKKCMEF------TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF 245 (645)
Q Consensus 172 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 245 (645)
...+-+.+......++ +.+...+....|.+.|..+-|+-...++++.+.|..+..--.+.+.....+.......
T Consensus 80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 8888888777765554 6677778888999999999999999999999999987665555544433222111111
Q ss_pred ccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEE
Q 006424 246 GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLN 322 (645)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~ 322 (645)
....... ..|..+........ ++....-.++..+.+|.+.+.+++|.+.+ .|++|..|..|.+||+. ++....
T Consensus 160 ~~~~d~~-~~fvGd~~gqvt~l---r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 160 ALQFDAL-YAFVGDHSGQITML---KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCceeeE-EEEecccccceEEE---EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 1011111 33444333333221 11222346678899999999999999865 89999999999999995 455566
Q ss_pred EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424 323 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402 (645)
Q Consensus 323 ~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~ 402 (645)
.++|.+.|..+...+ ....+++++.||.|.+||++..+.....-..+.-.. .=..-.+|+++..-
T Consensus 236 l~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ--------------~c~qpffwn~~~m~ 300 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQ--------------KCNQPFFWNFRQMW 300 (404)
T ss_pred eccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhh--------------hhCchHHHHHHHHH
Confidence 678999999998887 778899999999999999977655432111110000 00112344443211
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------cceeeEeecCCCCCeEEEEEecCC
Q 006424 403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------DVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
. ...+....+...+.+...+...+.+. ....+.+..-.+|+.|.- .+... .+.-...|+.+.+..+-
T Consensus 301 ~-~k~~glr~h~crkcg~avc~~c~s~~-~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~--phei~tgItamhlqetl 376 (404)
T KOG1409|consen 301 D-RKQLGLRQHHCRKCGKAVCGKCSSNR-SSYPTMGFEFSVRVCDSCYPTIKDEERTPLAI--PHEIKTGITAMHLQETL 376 (404)
T ss_pred h-hhhhhhhhhhhhhhhhhcCcccccCc-cccccccceeEEEEecccchhhhcCCCCcccc--ccccccceeEEEhhhhc
Confidence 1 11122223333333333333333332 345555666667776621 11222 23345679999999999
Q ss_pred CEEEEEeCCccEEEEeCCCC
Q 006424 474 KHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+|+|+|.|..|+|||+.+-
T Consensus 377 glLvTsG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 377 GLLVTSGTDRVIKIWDVRSV 396 (404)
T ss_pred cceeecCCceEEEEEechhh
Confidence 99999999999999998754
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=166.84 Aligned_cols=288 Identities=20% Similarity=0.277 Sum_probs=213.0
Q ss_pred cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
.++.+...|.+|.|.|+.+.|+..|..|++||.|..|.+||+..+.
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---------------------------------- 175 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---------------------------------- 175 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC----------------------------------
Confidence 4555677799999999999999999999999999999999998731
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecC-CCeEE---EEecCCCcEEEEEEeeCCC
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-CNQCL---NVFDHHNYVTCVQFNPIDD 340 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~-~~~~~---~~~~~~~~v~~l~~~p~~~ 340 (645)
..+.-..||...|....|-|. ..+++++.||.|++=.+. ++.+. ....|.++|..++.-|.+.
T Consensus 176 ----------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 176 ----------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred ----------cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 223334578888888888874 379999999999998774 34333 2235999999999999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEE----eeccCC---CeEEEEEccCCC-EEEEEecCCeEEEEEecCCcee-----eeE
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-----LEK 407 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~---~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~-----~~~ 407 (645)
.-|.+++.|+.+.-+|++.+.... ...+.. ..++++.+|... .+++|+.|-.+++||.+.-... ...
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 889999999999999998755322 222222 577889999554 8999999999999998754332 111
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--------------cce-eeEeecCCCCCeEEEEE-ec
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DVI-HKFKGLPKSGSQMSASF-TT 471 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--------------~~~-~~~~~~~~~~~i~~v~~-sp 471 (645)
+..+.........|++++|+.++ .-++++..|-.|+++.-. ... +.++++.+...|.++-| .|
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred cCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence 11111111334679999999887 567777778889999621 112 23677777777888875 78
Q ss_pred CCCEEEEEeCCccEEEEeCCCCCcCC-CcccCCcceeeeeecCCcEEEEe
Q 006424 472 TGKHIISIGDDCRVYVWNYDELCFPS-SKQKNSVRSCEHFFSEGVSVAVQ 520 (645)
Q Consensus 472 ~~~~l~t~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~ 520 (645)
...|+++||+-|.|.||+-.+++... ......++.|+..||.-+++|.+
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 89999999999999999998886332 23334477777777766665443
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=8.7e-17 Score=147.03 Aligned_cols=230 Identities=17% Similarity=0.306 Sum_probs=172.7
Q ss_pred cCccCeEEEEEcCCC------eEEEEeCCCcEEEEecCC--CeEE--EEe------cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424 285 GHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQCL--NVF------DHHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~------~l~s~s~dg~I~iwd~~~--~~~~--~~~------~~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
.|..+++.+.|.|+. +|+|++ ..+++|.+.. .+.. ..+ .+..++++..|+..+.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 589999999999863 344443 4799999863 2211 111 266789999999989999999999
Q ss_pred CCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 349 DGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 349 dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
|-+..|||+.++. ..++..|...|..++|...+. .||+.+.||.+++||++..........-.. ...+...
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~----~~~pLlR 247 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS----PSTPLLR 247 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC----CCCccee
Confidence 9999999999873 334789999999999998654 788999999999999997765433222221 1367889
Q ss_pred EEEcCCCCcEEEEEECC-CeEEEEECCc-ceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 424 IQFSRDESQRIMITSED-SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~d-g~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
++|++...+++++-..| ..|.|.|++. .........|.+.|++++|.|. ..+|.|+|+|..+.|||+...-...
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~--- 324 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN--- 324 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC---
Confidence 99999888899987776 5899999883 2333344559999999999996 5689999999999999998653211
Q ss_pred cCCcceeeeeecCCcEEEEecCCCC
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIG 525 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~ 525 (645)
.......+...+.+..+.|++..
T Consensus 325 --~~dPilay~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 325 --GEDPILAYTAGGEVNQIQWSSSQ 347 (364)
T ss_pred --CCCchhhhhccceeeeeeecccC
Confidence 11122334456778889998543
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=154.24 Aligned_cols=191 Identities=14% Similarity=0.227 Sum_probs=150.3
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCcEE---EeeccC-CCe
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI 372 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~-~~v 372 (645)
..++++-..|.|++||..+++.+..|. ++..++.+.|... .++.+.+|+.||+|++||+|..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468888889999999999999999986 7777888888753 4678999999999999999975433 233333 567
Q ss_pred EEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424 373 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 448 (645)
Q Consensus 373 ~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~ 448 (645)
.+++.+..++.+++|+. +-.+.+||++..+.... .-...|...|++++|+|..+++|++||.||.|.+||+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-----~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR-----QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhh-----hhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 77777778888988864 67899999998876432 2233456899999999999999999999999999998
Q ss_pred Ccc---eeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCCC
Q 006424 449 VDV---IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 449 ~~~---~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~ 494 (645)
... -.......+...|..+.|..++ +.|.+-+..++..+|+++.+.
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 732 1222233466779999998876 568888899999999999885
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=5.2e-17 Score=154.38 Aligned_cols=206 Identities=19% Similarity=0.271 Sum_probs=161.5
Q ss_pred ceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE-------E-EEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 280 LQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------L-NVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~-------~-~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.-.+.||+++|..++|+|- ..++|||.|.+|.||++..+.. + ...+|...|.-++|+|.-.+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 4456799999999999974 4899999999999999865432 2 3336999999999999888999999999
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.+|.+|++.+++.+-...|.+.|.+++|+.||.++++.+.|..|++||.+.+....+..... +..-..+.|-.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~ 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS 227 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence 99999999999877767799999999999999999999999999999999988754432222 345566778888
Q ss_pred CCcEEEEEE---CCCeEEEEECC---cceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 430 ESQRIMITS---EDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s---~dg~I~iwd~~---~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
| .++.+|- .+..+-+||.. ++...... .....|.---|++|.+.++.+| .|+.|+-|.+.+.
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 7 4444442 36789999955 33322222 2445566566788988877665 6999999999765
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.3e-17 Score=154.41 Aligned_cols=208 Identities=19% Similarity=0.307 Sum_probs=165.5
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC------CCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~------~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
+.+.+|.+.|+++.|+.++ +|++|+.|..+++|+++ +.+++...+ |.+.|.|++|.- ....+++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 4567899999999999877 89999999999999984 346666665 567899999998 7788999999999
Q ss_pred EEEEeCCCCcEEEeeccCC---CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
|...|+.+.+.+....+.. .|+.+..+|-.+.|++.+.+|.|.+||.+....+...+.... .+.....+.|+|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeecC
Confidence 9999999999888776655 899999999999999999999999999997765444333222 246678899999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeE------eecCC-CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKF------KGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~------~~~~~-~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
..+.+|++.+..+.+.+||.+.....+ .+... ...-.++.|+|+|..+.+--....-.+||+.+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 988999999999999999987432221 11111 223367889999999888766666677777664
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.4e-17 Score=154.10 Aligned_cols=187 Identities=19% Similarity=0.336 Sum_probs=146.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424 213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 292 (645)
Q Consensus 213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 292 (645)
..+|++...|.|++||..+ ++.+..+++|...++.
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------------------------------g~~l~~fk~~~~~~N~ 75 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------------------------------GQLLEEFKGPPATTNG 75 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------------------------------hhhhheecCCCCcccc
Confidence 5788999999999999987 5668889999999999
Q ss_pred EEEcCC---CeEEEEeCCCcEEEEecCCCeEEEEec---CC-CcEEEEEEeeCCCCEEEEEeC----CCcEEEEeCCCCc
Q 006424 293 LAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFD---HH-NYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEKR 361 (645)
Q Consensus 293 l~~s~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~-~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~~~~~ 361 (645)
+.|..+ ..+.+|+.||+|++||++.......+. ++ .+..|++.+- .++++++|.. +-.|.+||+|..+
T Consensus 76 vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 76 VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc
Confidence 999763 278999999999999998876655442 33 4677777765 6777877754 5679999999866
Q ss_pred E-EE--eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 362 V-VD--WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 362 ~-~~--~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
. +. ...|.+.|++++|+| +-+.|++|+.||.+.+||+......-. .-+...+...|.++.|..++...+.+-
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa----L~~viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA----LLHVINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh----HHHhhcccceeeeeeeecCCcceEEEE
Confidence 5 33 567999999999999 456999999999999999986532111 111223456799999998876678899
Q ss_pred ECCCeEEEEECC
Q 006424 438 SEDSKLRILDGV 449 (645)
Q Consensus 438 s~dg~I~iwd~~ 449 (645)
+...+..+|++.
T Consensus 231 TH~Etf~~~ele 242 (376)
T KOG1188|consen 231 THMETFAIYELE 242 (376)
T ss_pred EccCceeEEEcc
Confidence 999999999754
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=2e-18 Score=177.88 Aligned_cols=240 Identities=25% Similarity=0.424 Sum_probs=186.8
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
+...+.|.+|..+|.|+.|...|.++++|+.|..++||..++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-------------------------------------- 221 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-------------------------------------- 221 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence 345566889999999999999999999999999999999887
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
...+....||.+.|+.++.+.++ .++++|.|..|++|.+.++.++..+ +|++.|++++|+| - .+.+
T Consensus 222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~----~sss 289 (1113)
T KOG0644|consen 222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSS 289 (1113)
T ss_pred -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-c----ccCC
Confidence 45677889999999999998777 8899999999999999999998877 5999999999999 2 3778
Q ss_pred CCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 348 IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
.||++++||.+-...... ......+.++.|...+..+++|+.|+.-..|.+......- ..+.
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li 356 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI 356 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence 899999999982222211 2234567788888889999999999988887665332211 1111
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCE-EEEEeCCccEEEEeCCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~-l~t~s~dg~I~iwd~~~~~ 494 (645)
-+.++.+-..+.+++-.+-.+.+|++.+. .+...+ |...+..+.++|-... ..+++.||.+.|||+-.+-
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 22222232256777778889999997755 444444 7778888999996554 5678899999999998773
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=3.4e-16 Score=149.63 Aligned_cols=291 Identities=17% Similarity=0.263 Sum_probs=196.1
Q ss_pred cCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 200 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 200 ~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..+|.++.|.++.. .||||+.|..|++|.+........ ... -.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------~~~-----------------------V~ 56 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------DMK-----------------------VE 56 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------cee-----------------------EE
Confidence 35799999999876 999999999999999876321100 000 12
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--------C-----C---eEEEEe-cCCCcEEEEEEeeCCC
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD 340 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--------~-----~---~~~~~~-~~~~~v~~l~~~p~~~ 340 (645)
.+..+..|...|+++.|+|+| .|+||+.+|.|.+|-.. + . ...+.. .|...|..++|+| ++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence 245677899999999999998 99999999999999765 2 1 111222 4889999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE--eeccc-c--
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDR-K-- 414 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~-~-- 414 (645)
+++++++.|..+++||+..+.+.. ...|...+..++|.|-++++++-+.|...+.+.+.........- ..... .
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999877 66789999999999999999999999877777765443322110 01100 0
Q ss_pred -----------ccCCCCeEEEEEcCCCCcEEEEEEC----C-----CeEEEEECCccee-eEeecCCCCCeEEEEEec--
Q 006424 415 -----------KTSGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-- 471 (645)
Q Consensus 415 -----------~~~~~~i~~i~~s~~g~~~l~~~s~----d-----g~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp-- 471 (645)
..-......++|+|+| .++++.+. + +..++++.....+ .........+...+.|+|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy 294 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY 294 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE
Confidence 0011234567899998 67776543 2 2345665332111 111111333444444443
Q ss_pred ----------------CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424 472 ----------------TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 535 (645)
Q Consensus 472 ----------------~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~ 535 (645)
.+-.+|.++ ...|+|||.+...... .+.-+++ ..++.++|++||..|+..+.|+
T Consensus 295 ~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~------~v~nihy---~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 295 YELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA------VVDNIHY---SAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEeccccccccccccccceEEEEee-cceEEEeccccccceE------EEeeeee---eeecceeecCCCcEEEEeccCC
Confidence 223344444 5689999987652111 1111233 3478899999999999877776
Q ss_pred ccc
Q 006424 536 LRD 538 (645)
Q Consensus 536 ~~~ 538 (645)
...
T Consensus 365 yCS 367 (434)
T KOG1009|consen 365 FCS 367 (434)
T ss_pred ceE
Confidence 543
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=9.7e-17 Score=146.54 Aligned_cols=257 Identities=16% Similarity=0.244 Sum_probs=184.3
Q ss_pred cccccccccCcEEEEEECCC-CCEEEEEeCC-------CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424 192 TSQEIQAHKGCIWTLKFSPD-GRYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 263 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspd-g~~L~sgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (645)
..+.|..|.+.|+.++-+|- .+.|+|+..| -.+.||.+.........
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~------------------------- 109 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS------------------------- 109 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------------
Confidence 44567789999999999995 5577776542 23678877652111000
Q ss_pred ceeecCCCceeccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-EEEe------cCCCcEEEEE
Q 006424 264 VPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCVQ 334 (645)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-~~~~------~~~~~v~~l~ 334 (645)
.....+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+ ++....++-+
T Consensus 110 -----------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~ 177 (370)
T KOG1007|consen 110 -----------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA 177 (370)
T ss_pred -----------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc
Confidence 0012223333 355689999999987 666555 88999999987655 3332 2556778889
Q ss_pred Eee-CCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 335 FNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 335 ~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
|+| .+++.+++.+ |+++..||+++..... -..|...|..+.|+|+.+ +|++++.||.|++||.+..+.+.....-
T Consensus 178 WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~ 256 (370)
T KOG1007|consen 178 WSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG 256 (370)
T ss_pred cCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence 999 5677777665 8999999999866543 345778899999999876 6778899999999999988776554333
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-----------------------cee------eEeecCCC
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------------VIH------KFKGLPKS 461 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-----------------------~~~------~~~~~~~~ 461 (645)
|...+.++.|+|...+++++++.|..|.+|.... ... .-....|.
T Consensus 257 ------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 257 ------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 4579999999998778999999999999995210 000 01123478
Q ss_pred CCeEEEEEecCCCE-EEEEeCCccEEEEeCCC
Q 006424 462 GSQMSASFTTTGKH-IISIGDDCRVYVWNYDE 492 (645)
Q Consensus 462 ~~i~~v~~sp~~~~-l~t~s~dg~I~iwd~~~ 492 (645)
..|.+++||.-..+ +|+-|.||++.|=++..
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 89999999886665 56778999999876653
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-15 Score=164.19 Aligned_cols=265 Identities=11% Similarity=0.165 Sum_probs=178.5
Q ss_pred cccccccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcc
Q 006424 186 EFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 264 (645)
Q Consensus 186 ~~~~~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (645)
|..+-.++..|..|+..|..++.+++. .+++|||.||+|++|+.........
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------------------- 1086 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc---------------------------
Confidence 445555777889999999999998765 8999999999999999876321100
Q ss_pred eeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-------EEEec--CCC-cEEEE
Q 006424 265 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-------LNVFD--HHN-YVTCV 333 (645)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-------~~~~~--~~~-~v~~l 333 (645)
..+...++..-...+.++...+.+ .++.++.||.|++.+++.... ..... ..+ .|..-
T Consensus 1087 -----------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1087 -----------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred -----------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee
Confidence 011223333346678888887766 899999999999999875211 11111 222 33344
Q ss_pred EEeeCCCC-EEEEEeCCCcEEEEeCCCCcEE---EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 334 QFNPIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 334 ~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
+|...... .++.+..-+.|..||+++.... +.....+.|++++.+|.++++++|+..|.+.+||++=... ...+.
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-i~sw~ 1234 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-ILSWE 1234 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-eeccc
Confidence 45443344 6888888899999999886543 3344567899999999999999999999999999985443 33333
Q ss_pred eccccccCCCCeEEEEEcCCCC--cE-EEEEE-CCCeEEEEECCcceeeEeec-------------------CCCCCeEE
Q 006424 410 FHDRKKTSGNKITGIQFSRDES--QR-IMITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMS 466 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~--~~-l~~~s-~dg~I~iwd~~~~~~~~~~~-------------------~~~~~i~~ 466 (645)
+.. ..++..+..+|--+ .. +.+++ ..+.|.+|++.........- .+.-....
T Consensus 1235 ~P~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~ 1309 (1431)
T KOG1240|consen 1235 HPA-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS 1309 (1431)
T ss_pred Ccc-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee
Confidence 333 26677777665422 34 44444 57899999976433222211 11112223
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
..+..-+.++.+|+.|+.|+.||....+
T Consensus 1310 ~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1310 CGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eecccCCceeeecCCccceeeccCCCcc
Confidence 3444456789999999999999988763
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2.4e-16 Score=164.80 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=182.8
Q ss_pred ccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
-...|+|+.|+| +..+||.|+.+|.|.+||+..+..... .
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------s 281 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------S 281 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------------------------c
Confidence 456899999999 466888999999999999987432100 0
Q ss_pred CCceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeE------EEEe-------cCCCcEEEEEEeeCCCC
Q 006424 278 SPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~------~~~~-------~~~~~v~~l~~~p~~~~ 341 (645)
..-.....|..+|+.+.|..+ .-+++++.||.|..|+++.-.. .... .....+++++|.+.+.+
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 111223469999999999754 2599999999999998763221 1111 12346899999998899
Q ss_pred EEEEEeCCCcEEEEeC---CCCc------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424 342 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~---~~~~------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 412 (645)
.|++|+.+|.|.-=+. +... ......|.+.|+++.++|-+..++..+.|.++++|.......+.......
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~- 440 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS- 440 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence 9999999999887333 2222 22456788999999999987766666669999999987444333222211
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
...+++++|||..+..++++..||.+.+||+... ........+....+.+.|+++|+.|++|...|.+++|++
T Consensus 441 -----~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 441 -----PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 3569999999998889999999999999997621 112222223556677888999999999999999999999
Q ss_pred CCC
Q 006424 491 DEL 493 (645)
Q Consensus 491 ~~~ 493 (645)
...
T Consensus 516 ~~~ 518 (555)
T KOG1587|consen 516 SES 518 (555)
T ss_pred Cch
Confidence 754
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=158.78 Aligned_cols=340 Identities=16% Similarity=0.233 Sum_probs=231.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|+-.++|.++||+++++|+|..||.|.+|.--... -+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~ 241 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS 241 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence 477779999999999999999999999999633200 012
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
...+.++=|..+|.+++|+++| +|+||+..|.+.+|.+++++....-+-.++|..+.++| ++++.+....|..|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 3356677799999999999998 99999999999999999998444446888999999999 999999889999999998
Q ss_pred CCCCcEEEe------------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-----cCCC
Q 006424 357 VCEKRVVDW------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGN 419 (645)
Q Consensus 357 ~~~~~~~~~------------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~ 419 (645)
..+...... ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ +....... .+.-
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~~n~~v 399 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGDVNIQV 399 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee-EEEEeecccCCcceeEE
Confidence 765443321 11244567889999888888899999999999987766533 22111111 1234
Q ss_pred CeEEEEEcCCCCcEEEEEEC--------C--CeEEEEECCcceeeEe-----ecCCCCCeEEEEEec-CC-CEEEEEeCC
Q 006424 420 KITGIQFSRDESQRIMITSE--------D--SKLRILDGVDVIHKFK-----GLPKSGSQMSASFTT-TG-KHIISIGDD 482 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~--------d--g~I~iwd~~~~~~~~~-----~~~~~~~i~~v~~sp-~~-~~l~t~s~d 482 (645)
.++.+..+..| .+++|.-. | -.+++|......+.+. ...|...+...++.+ .. ...++++.|
T Consensus 400 ~itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 400 GITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred eeeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 57778888886 78887632 3 3578897543322222 244666665555544 33 379999999
Q ss_pred ccEEEEeCCCCCcCCCcccCCcceeeeee--cCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCcc--CCCCc
Q 006424 483 CRVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWI--RDSER 557 (645)
Q Consensus 483 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~--~~~~~ 557 (645)
|.++||-+.+.+....... ...|...+ +..++.+.+|+.||..|+...++. +.+|+.... .... ....-
T Consensus 479 g~~KiW~~~~~~n~~k~~s--~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~----Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKKSS--NWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT----ITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred CeEEEEEEecccccCcCcc--ceEEeeeeccccCcccchhhcCCCcEEEEecCCE----EEEecCCChhhhhcccccccc
Confidence 9999999966543333322 23333222 567788999999999988766653 456777552 1111 11112
Q ss_pred cccCccccCCCC---CCcCCCCCCCcCCCCCCccC
Q 006424 558 FSLGSWFSNDGP---CRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 558 ~~~~~~fs~dg~---~l~s~s~~d~~i~iWd~~~~ 589 (645)
...++.|..... .+..++ .+++-+|++-+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~WNll~~ 585 (792)
T KOG1963|consen 553 PIAELLFTAQTQNDGALVHAT--QQRLSVWNLLSM 585 (792)
T ss_pred chHhHhhhcccccccceeecc--CceEehHhhhhh
Confidence 233333433222 222333 458889998766
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.3e-17 Score=160.82 Aligned_cols=243 Identities=18% Similarity=0.314 Sum_probs=168.8
Q ss_pred cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
+..++.+.++|.||+|.|+|+.|+.+|.+|++||.|-.+.|||.-.
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~---------------------------------- 81 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE---------------------------------- 81 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence 4556667788999999999999999999999999999999999864
Q ss_pred eecCCCceeccCCCceee-ccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCC----------eEEEEec-CCCcE
Q 006424 266 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN----------QCLNVFD-HHNYV 330 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~----------~~~~~~~-~~~~v 330 (645)
.++++.+ .||...|.++.|-|. ..+++|+.|..|+++|+... .....+. |...|
T Consensus 82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV 150 (758)
T ss_pred -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence 3445544 489999999999874 38999999999999999742 1222233 88889
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-----------eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEe
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-----------~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~ 398 (645)
..++..|...+.+.+++.||+|+-||++...... +...--...++.++|. ..+|++|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999999555999999999999999998743211 1222234678899995 458999999999999996
Q ss_pred cCCceeeeEEeeccccccCCCCeEEEE-EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424 399 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~i~-~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~ 477 (645)
+........-..... .......|+. |+|.+ + ...+|.+.. ....++-+.|+|+|.-|+
T Consensus 231 Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCCTYVTFNPNGTELL 289 (758)
T ss_pred hhhccCCCCCccccC--CCCcccchhheecCcc---c--cCccccccc--------------ceeeeEEEEECCCCcEEE
Confidence 533222110000000 0011222332 34432 1 111111100 111356788999998777
Q ss_pred EEeCCccEEEEeCCCCC
Q 006424 478 SIGDDCRVYVWNYDELC 494 (645)
Q Consensus 478 t~s~dg~I~iwd~~~~~ 494 (645)
..-..-.|+++|+..++
T Consensus 290 vs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EeeCCeEEEEEeecCCC
Confidence 66666789999998765
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.4e-17 Score=146.47 Aligned_cols=296 Identities=14% Similarity=0.135 Sum_probs=197.7
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
..+...+++|.+.|+++.|..+++|++|...|.|++|++.+.+.+..++ +...|+.+.--| + ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence 3456677899999999999988899999999999999999988887776 667899999888 4 67888899999999
Q ss_pred EeCCCCcEEEeeccCCCeEEEEEcc-----CCC----EEEEEecCC-eEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 355 WGVCEKRVVDWADVRDVISAICYIP-----DGK----GFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 355 wd~~~~~~~~~~~~~~~v~~l~~sp-----~g~----~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
|++..+..+.... -.++++.|.+ .++ .++.-++.. .+++-|..... .............+.+.|.
T Consensus 82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeee
Confidence 9998866554322 3344444433 221 111111100 01112211111 1111112222334667777
Q ss_pred EEcCC-CC-cEEEEEECCCeEEEEECCcce----------eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 425 QFSRD-ES-QRIMITSEDSKLRILDGVDVI----------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 425 ~~s~~-g~-~~l~~~s~dg~I~iwd~~~~~----------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.+... ++ -++++|.++|.|.+||+.... .......|..+|.++.+.+.-..=++|+.+..+..|+++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 65432 22 356677889999999987542 2223345788999999987766667788888888888865
Q ss_pred CCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCc
Q 006424 493 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG 572 (645)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~ 572 (645)
.....+.... . . -...-+.++..-||++.++
T Consensus 237 s~gslq~~~e-------------~-~-----------------------------------lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 237 STGSLQIRKE-------------I-T-----------------------------------LKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred ccCcccccce-------------E-E-----------------------------------ecCCCccceEEccCCcEEe
Confidence 4111111000 0 0 0011133445668999999
Q ss_pred CCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 573 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 573 s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
+|.| |++|||+.-.+. .|......|...+..++|++ |..++++||.|++|-+|+.|
T Consensus 268 TAGW-D~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 268 TAGW-DHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKLY 323 (323)
T ss_pred eccc-CCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeecC
Confidence 9999 999999998887 24556667777777788888 57899999999999999987
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=1.7e-14 Score=152.22 Aligned_cols=320 Identities=24% Similarity=0.392 Sum_probs=224.4
Q ss_pred CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 201 GCIWTLKF-SPDGR-YLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 201 ~~V~~l~f-spdg~-~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
..+..+.+ ++++. +++..+. |+.+.+|+... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------------------------------~~ 145 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------------------------------PG 145 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------------------------------CC
Confidence 36777777 88887 5555455 99999999875 02
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCC-EEEEEeCCCcEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVR 353 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~-~l~s~s~dg~i~ 353 (645)
.....+.+|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. .+++++.|+.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEE
Confidence 3456778899999999999998 7778875 9999999999877777775 789999999998 776 556658999999
Q ss_pred EEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 354 IWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 354 vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
+||...+.... +..|.... ...|+|++..+++++.|+.+++|+........... ..|...+.++.|.|++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~- 296 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------SGHSSSVLSVAFSPDG- 296 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE------ecCCccEEEEEECCCC-
Confidence 99988776665 56666664 33899999899999999999999998766522222 2235789999999976
Q ss_pred cEEEEEECCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCE 508 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 508 (645)
..+++++.|+.+.+||.......... ..|...+..+.|.+++..++.+ ..|+.+.+|++.... ...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~---------- 365 (466)
T COG2319 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK---------- 365 (466)
T ss_pred CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE----------
Confidence 56666888899999987744333322 2466678999994333566665 678999999998773 000
Q ss_pred eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC--ccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424 509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE--RFSLGSWFSNDGPCRGSATWPAEKLPLWDV 586 (645)
Q Consensus 509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~ 586 (645)
.......+..+.+.+ ...... .......+.+|+............ ..+....+++++..++++.. ++.+++|+.
T Consensus 366 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 441 (466)
T COG2319 366 TLEGHSNVLSVSFSP-DGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS-DNTIRLWDL 441 (466)
T ss_pred EecCCceEEEEEECC-CCCEEE--EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC-CCcEEEEec
Confidence 011111145666666 422222 111223344455433333222222 56777888999998877555 788999987
Q ss_pred cc
Q 006424 587 TI 588 (645)
Q Consensus 587 ~~ 588 (645)
.+
T Consensus 442 ~~ 443 (466)
T COG2319 442 KT 443 (466)
T ss_pred cC
Confidence 76
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=140.45 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=191.5
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEecCCC--------------eEEEEecCCCcEEEEEEe-------eCCCCEEEEEe
Q 006424 290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--------------QCLNVFDHHNYVTCVQFN-------PIDDNYFISGS 347 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--------------~~~~~~~~~~~v~~l~~~-------p~~~~~l~s~s 347 (645)
...+.|+||| .|++-+.|..+.+|++... .....+.....|...+|- | +.+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeecc
Confidence 4457899998 8999999999999987321 111222355678888876 5 678999999
Q ss_pred CCCcEEEEeCCCCcEEEe---eccCC---CeEEEEEccCCCEEEEEecCCeEEEEEec-CCce-eeeEEeeccccccCCC
Q 006424 348 IDGKVRIWGVCEKRVVDW---ADVRD---VISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEKVDFHDRKKTSGN 419 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~---~~~~~---~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~ 419 (645)
.+.-|++||.-+++.... ..|.+ ...+++|+|||.+|++|. ...|++||+. .+.. +......++ +....+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccc
Confidence 999999999999887652 23333 456899999999998875 6799999993 3221 111111111 222346
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCC
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSS 498 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~ 498 (645)
-+.+++|+|..+..++.++....+-||.-......+....|.+.|+.+.|.++|+.|++|.. |-.|..||++....+..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 78999999988779999999988888764433333334459999999999999999999984 78999999987643222
Q ss_pred cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc---cCCccCCCCccccCccccCCCCCCcCCC
Q 006424 499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE---TAPWIRDSERFSLGSWFSNDGPCRGSAT 575 (645)
Q Consensus 499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~fs~dg~~l~s~s 575 (645)
.-...+ .....-+-....|++..|++.+.++ .+.+|+... .......+...+.++++.|-...+++++
T Consensus 289 ~L~rhv------~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 289 ALERHV------GDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhhhhc------cCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 211111 0112223444568888888765554 466787744 2334555667789999999988888877
Q ss_pred C
Q 006424 576 W 576 (645)
Q Consensus 576 ~ 576 (645)
.
T Consensus 360 G 360 (406)
T KOG2919|consen 360 G 360 (406)
T ss_pred C
Confidence 5
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.3e-15 Score=159.41 Aligned_cols=285 Identities=15% Similarity=0.154 Sum_probs=187.7
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+.+..+.-..+.|+|-...++++...-.|+|||.+.+...
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------------------- 1099 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------------------- 1099 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee----------------------------------------
Confidence 3444456677889998889999987788999999874432
Q ss_pred cCCCceeec---cCccCeEEEEEcCC---CeEEEEeCCCcEEEEecC-----CCeEEEEec--------CCCcEEEEEEe
Q 006424 276 EESPLQELH---GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-----CNQCLNVFD--------HHNYVTCVQFN 336 (645)
Q Consensus 276 ~~~~~~~l~---~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~-----~~~~~~~~~--------~~~~v~~l~~~ 336 (645)
..|. .....|+.+.+-++ ..+++|+.||.|+||+-- ..+.+.... ..+.-.-+.|.
T Consensus 1100 -----~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq 1174 (1387)
T KOG1517|consen 1100 -----NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ 1174 (1387)
T ss_pred -----ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh
Confidence 2222 13456888888653 289999999999999642 223332221 11111345777
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCcEEEe--eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 337 PIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 337 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
. ...+|++++.-..|+|||.....++.- .+....++++.-+- .|+.+++|..||.+++||.+............
T Consensus 1175 Q-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-- 1251 (1387)
T KOG1517|consen 1175 Q-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-- 1251 (1387)
T ss_pred h-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec--
Confidence 7 444555556578999999988777663 33455677766443 57999999999999999998665432211111
Q ss_pred cccCCCC--eEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEe-ecCCC--C-CeEEEEEecCCCEEEEEeCCccEE
Q 006424 414 KKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK-GLPKS--G-SQMSASFTTTGKHIISIGDDCRVY 486 (645)
Q Consensus 414 ~~~~~~~--i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~-~~~~~--~-~i~~v~~sp~~~~l~t~s~dg~I~ 486 (645)
.|... |..+.+.+.|-..|++|+.||.|++||++. ....+. ...|. + ..+++..+++...+|+|+. +.|+
T Consensus 1252 --~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1252 --EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred --ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 22333 999999998766799999999999999885 222222 21122 3 5899999999999999998 9999
Q ss_pred EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 535 (645)
Q Consensus 487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~ 535 (645)
||++...+........ .. .-...|....++|+|-...|+....|.
T Consensus 1329 Iy~~~G~~l~~~k~n~---~F-~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNP---GF-MGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred EEecChhhhcccccCc---cc-ccCcCCCcceeeecchhHhhhhccCCc
Confidence 9999876533222111 00 001233445566666666666554443
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=135.49 Aligned_cols=246 Identities=14% Similarity=0.221 Sum_probs=175.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|.+-+++|.+++|+.|+.+|.|.+..+.+....... .....++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------------------------~~gk~~i 55 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------------------------PPGKLKI 55 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------------------------CCCCcce
Confidence 34667789999999999999999999998763221110 0013445
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE----EEEe-----c-----CCCcEEEEEEeeCCCCEEEEE
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVF-----D-----HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~----~~~~-----~-----~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...++|.++|+.++|+ +.+|++|+. |.|+-|..+.... .... . .-..|+++...| ..+-++.+
T Consensus 56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence 5668999999999998 456777765 9999997643221 1111 0 123688999999 66666666
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc--ccc-CCCCeE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--KKT-SGNKIT 422 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~-~~~~i~ 422 (645)
+.|+.++.||++++++.. +.+|.+.+.++.--.....+++|++||++++||.++.+........... .+. .+..|.
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 689999999999999876 7899999999998666668999999999999999988764432222111 111 245567
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+++.+.+ ++++|+ ...+.+|+++ +....+.. ..++..+.|. .+.+++++..+.|.-|.+..-
T Consensus 213 ala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 213 ALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEeccCc---eEEecC-CCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence 7776554 555554 5679999988 44555554 4567778884 557888888889999988643
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=2.8e-15 Score=156.90 Aligned_cols=272 Identities=15% Similarity=0.230 Sum_probs=192.5
Q ss_pred CcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-------EEeeccCCCeEEEEEcc
Q 006424 308 KTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-------VDWADVRDVISAICYIP 379 (645)
Q Consensus 308 g~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~~~~~~v~~l~~sp 379 (645)
+.+.+|+++.. .+...+.....|+|++|+|.+.++++.|..+|.|.+||++.+.. .....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 37999999766 66667778899999999999999999999999999999987554 22456888999999977
Q ss_pred CCC--EEEEEecCCeEEEEEecCCceeeeEEeecccc-----ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--
Q 006424 380 DGK--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-- 450 (645)
Q Consensus 380 ~g~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-- 450 (645)
+.. -+++++.||.|..|+++.-..+.......... ......++++.|.+.....+++|+.+|.|.--+...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 49999999999999988766544422222111 122457899999998889999999999998854221
Q ss_pred -ce-eeE----eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424 451 -VI-HKF----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 524 (645)
Q Consensus 451 -~~-~~~----~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~ 524 (645)
.. ..+ ....|.++|..+.++|=+..++..+.|.+++||.......+.... ......+++++|||.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---------~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---------DSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---------hhccceeeeeEEcCc
Confidence 11 111 223478899999999988766666669999999977332222111 112233788999999
Q ss_pred CccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424 525 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ 604 (645)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~ 604 (645)
...++.+.++ +|.|.+||+......... .+
T Consensus 453 rpavF~~~d~-------------------------------------------~G~l~iWDLl~~~~~Pv~-------s~ 482 (555)
T KOG1587|consen 453 RPAVFATVDG-------------------------------------------DGNLDIWDLLQDDEEPVL-------SQ 482 (555)
T ss_pred CceEEEEEcC-------------------------------------------CCceehhhhhccccCCcc-------cc
Confidence 8877644432 788999998766322222 11
Q ss_pred hhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 605 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 605 ~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
... .......+.+..|+.|+.|+.-|+|.+|++-
T Consensus 483 ~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 KVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 111 1111222334359999999999999999873
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=2.1e-15 Score=138.07 Aligned_cols=240 Identities=14% Similarity=0.208 Sum_probs=173.1
Q ss_pred cccCcEEEEEECCCCC-----EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~-----~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.|.-+++.+.|.|+.. +|||.+. .+|+|.+...+...... .+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~-------------------------------~~ 140 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQ-------------------------------SV 140 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehh-------------------------------hh
Confidence 5888999999999863 6666554 59999987421100000 00
Q ss_pred eeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE----EEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
-....-..+..++++..|+.- +++.++|-|.+..|||++++.. .+.+.|...|..++|.....+.|++.
T Consensus 141 -----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 141 -----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred -----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe
Confidence 000111235678999999853 4899999999999999998733 34457999999999998556789999
Q ss_pred eCCCcEEEEeCCCCcEEE---eecc-CCCeEEEEEccC-CCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SIDGKVRIWGVCEKRVVD---WADV-RDVISAICYIPD-GKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~---~~~~-~~~v~~l~~sp~-g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.||.||+||++..+--+ -... ..+...++|++. -+++|+-..| ..|.+.|++....+...+. .|.+.
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~------~H~a~ 289 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR------NHQAS 289 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh------cCccc
Confidence 999999999999755322 2222 567888999884 4677775544 5799999998776654333 34689
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----eEeecCCCCCeEEEEEec-CCCEEEEEeC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGD 481 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~~~~~~i~~v~~sp-~~~~l~t~s~ 481 (645)
|+.++|.|..+..+++++.|..+-+||+.+... ........+.|+.+.|++ ....++.+..
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 999999998889999999999999999874333 111223567899999996 4667777653
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=1.1e-14 Score=148.93 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=172.8
Q ss_pred EEEEeCCCcEEEEecCC-Ce--EEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCC-CcEE--EeeccCCCeE
Q 006424 301 LLSCSMDKTVRMWQVGC-NQ--CLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCE-KRVV--DWADVRDVIS 373 (645)
Q Consensus 301 l~s~s~dg~I~iwd~~~-~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~-~~~~--~~~~~~~~v~ 373 (645)
+++...++.|.+||+.+ ++ .+..+.+.+....++++| ++++|++++ .++.|.+|++.. +.+. ..........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557789999999964 33 455565666788899999 888887664 578899999873 4432 2223344678
Q ss_pred EEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424 374 AICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 452 (645)
Q Consensus 374 ~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~ 452 (645)
.+.|+|+++++++++. ++.|.+|++.............. ......+++++|+|...+++...++.|.+||+....
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 8999999998888764 88999999974332211111110 113456788999984444566677999999986421
Q ss_pred e-------eEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424 453 H-------KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 524 (645)
Q Consensus 453 ~-------~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~ 524 (645)
. ..... .......+.|+|+|++++++.. ++.|.+|+++...... .. +..+...|.
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--------~~--------~~~~~~~p~ 222 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--------EC--------VQTLDMMPA 222 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--------EE--------EEEEecCCC
Confidence 1 11111 2334678999999999988876 8999999997431000 00 000000010
Q ss_pred CccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424 525 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ 604 (645)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~ 604 (645)
. ....++..++.|+|||+++.++...++.|.+|++...... .. ....
T Consensus 223 ~---------------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~-----~~~~ 269 (330)
T PRK11028 223 D---------------------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LS-----FEGH 269 (330)
T ss_pred c---------------------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EE-----EeEE
Confidence 0 0011223356688888877766555678999988543100 00 0000
Q ss_pred hhccCCCCCccCCCCcceEEEEec-CCCeEeEEEec
Q 006424 605 QCLNNVDDVRAISATWGLVIVTAG-CDGMIKTFHNY 639 (645)
Q Consensus 605 ~~~~~~~~~~~~~~~d~~~ivt~s-~Dg~Iriw~~~ 639 (645)
...........+++ ||++|+++. .+++|.+|++.
T Consensus 270 ~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 270 QPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeccccCCceEECC-CCCEEEEEEccCCcEEEEEEc
Confidence 00111222345555 677666555 59999999874
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.2e-14 Score=145.39 Aligned_cols=249 Identities=13% Similarity=0.204 Sum_probs=160.7
Q ss_pred ccCcEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+.+....++++|++++|++++ .++.|.+|++......
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l------------------------------------------ 70 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL------------------------------------------ 70 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce------------------------------------------
Confidence 345677899999999887664 5788999998631000
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecCC-C---eEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCC
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-N---QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDG 350 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~-~---~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg 350 (645)
....... ..+....++++|++ ++++++ .++.|.+|++++ + +.+..+.+.....+++++| +++++++++ .++
T Consensus 71 ~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~ 148 (330)
T PRK11028 71 TFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKED 148 (330)
T ss_pred EEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCC
Confidence 0011111 22345679999987 566655 488999999964 2 2233333444577889999 888775554 568
Q ss_pred cEEEEeCCCC-cEEE------eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCC--ceee-eEEeeccccccCCC
Q 006424 351 KVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKL-EKVDFHDRKKTSGN 419 (645)
Q Consensus 351 ~i~vwd~~~~-~~~~------~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~ 419 (645)
.|.+||+.+. .+.. ..........+.|+|+|++++++.. ++.|.+|++... .... ..+...........
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 228 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR 228 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence 9999999763 2211 1122445678999999999988876 899999999742 2211 11111111001112
Q ss_pred CeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcce--eeEeec-CCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCC
Q 006424 420 KITGIQFSRDESQRIMITS-EDSKLRILDGVDVI--HKFKGL-PKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE 492 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~~--~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~ 492 (645)
....+.++|+| ++++++. .++.|.+|++.... ..+... .-......+.++|+|++|+++.. +++|.+|+++.
T Consensus 229 ~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 229 WAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 33468899998 6676665 47899999975321 112221 11224567899999999998775 89999998863
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.9e-15 Score=148.98 Aligned_cols=261 Identities=14% Similarity=0.282 Sum_probs=175.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEe-----cCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.|...|.|+.|+.+...+.+++++..+..||+.+........ .++.++.... .-.........+...++-
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs-----~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRS-----SGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccc-----cCCCCCcceEEEEcCCce
Confidence 366677899999888777777666666666665433221111 1111110000 000000011111111111
Q ss_pred e---eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 273 F---QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 273 ~---~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
+ +-.++.......|.+.|.+-.|+|+| -|++++.||.|++|.-. |-.-.++ +...+|+|++|.|+..+.+++.+
T Consensus 87 f~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 87 FVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred EEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 1 11245556778899999999999998 79999999999999853 3332233 46778999999995555565544
Q ss_pred CCCcEEEEeCCC-CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 348 IDGKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 348 ~dg~i~vwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
+.+.+=-+.. .+++++..|.+-|.++.|++..+.+++|++|-..++||..+...-. ...|..+|++++|
T Consensus 166 --~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 166 --GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAF 235 (737)
T ss_pred --CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeee
Confidence 5666666553 5678899999999999999999999999999999999987655421 2234589999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
.|+ ..++.++.. +++ +. ....+.|..++||+||..++.|+..|.+.+=
T Consensus 236 npd--~~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 236 NPE--KDYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccc--cceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999 466666542 222 22 2367899999999999999999988877653
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.4e-15 Score=146.55 Aligned_cols=192 Identities=26% Similarity=0.380 Sum_probs=148.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424 204 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 283 (645)
Q Consensus 204 ~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (645)
.+++|+++|..|++|+.||++|||++.+ ...+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------------------------------------~~t~l~e 182 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------------------------------------MLTILEE 182 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc---------------------------------------------chhhhhh
Confidence 7899999999999999999999999765 3344556
Q ss_pred ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCC---CE--EEEEeCCCcEEE
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NY--FISGSIDGKVRI 354 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~---~~--l~s~s~dg~i~v 354 (645)
..|...|.++.|+||+ .|++.+.| ..+||+.+++.++.... .......+.|+. ++ .+ ++....-+.|+.
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence 6799999999999999 89999999 99999999997766553 333566777876 55 22 333334566777
Q ss_pred EeCCC--C----cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 355 WGVCE--K----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 355 wd~~~--~----~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
||+.. + +..+.......|++++.+++|++++.|+.||.|.+++....+.... .+..|...|+.+.|+|
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP 334 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence 77642 1 2222333456799999999999999999999999999986654322 2344568999999999
Q ss_pred CCCcEEEEEECCCeEEEEECC
Q 006424 429 DESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~ 449 (645)
+. +++++.+.|.+..+..+.
T Consensus 335 ds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 335 DS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred Cc-CcccccccCCceeEEEEe
Confidence 95 889999999888887644
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=134.79 Aligned_cols=244 Identities=19% Similarity=0.323 Sum_probs=182.0
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+.--..+|+|.+|++|+..+|.+.....|.||...+.+.
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------------------------------- 44 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------------------------------- 44 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------
Confidence 333457899999999999999999999999998876321
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec-CCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~-~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
.++.+++..|...|++++|+|.. .|++|+.|..-++|.. ..++- +..++++...+++.|+| .++.|++|+.-.
T Consensus 45 -w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar 122 (361)
T KOG1523|consen 45 -WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGAR 122 (361)
T ss_pred -ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCcc
Confidence 45678899999999999999975 9999999999999998 44433 33446899999999999 999999999999
Q ss_pred cEEEEeCCCCcEE-----EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee--------EEeec---ccc
Q 006424 351 KVRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDFH---DRK 414 (645)
Q Consensus 351 ~i~vwd~~~~~~~-----~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~~~---~~~ 414 (645)
.|.||-++...-- .-..+++.|++++|+|++-++++|+.|+.+++|..--.....+ .+.+. ...
T Consensus 123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 9999988765532 2345677899999999999999999999999997531111000 11111 011
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
...++.+..+.|+|+| ..|+-.+.|+.+.+-|.....+ ........-+..++.|-.+. .++.++.|..
T Consensus 203 ~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~ 271 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCG 271 (361)
T ss_pred ccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCC
Confidence 1345789999999998 8999999999999999664432 11112233677777775543 4455555533
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.6e-14 Score=152.31 Aligned_cols=198 Identities=16% Similarity=0.144 Sum_probs=138.5
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEE-
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVR- 353 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~- 353 (645)
.+.+..|...+.+.+|+|+| .|+.++.+ ..|++||+.+++.............++|+| +++.|+.++ .+|.+.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence 35566788889999999998 77776654 369999998876543333333445789999 998887764 577654
Q ss_pred -EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 354 -IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 354 -vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
+||+.++....+..+...+.+..|+|||+.++.++ .+|...+|++.........+ .. .. .+..|+|+|
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG- 344 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG- 344 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence 55777788777777777888999999999877655 57888999876443222221 11 12 357899998
Q ss_pred cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
..++.++.++ +.+||+.+......... .....+.|+|||++|+.++.+|.+.+|.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 6777776655 55689764432221111 123567899999999999999988888764
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=7.6e-14 Score=129.84 Aligned_cols=206 Identities=15% Similarity=0.228 Sum_probs=163.3
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~---~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
.+.-...+|+|.+|++++ .++.+.....|.||.....+ ...++ .|...|++++|+| ..+.|++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 344456799999999997 78888888999999987665 34444 3889999999999 889999999999999999
Q ss_pred CCC-Cc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 357 VCE-KR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 357 ~~~-~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
... ++ .+.+..++...+++.|+|.++.|++|+....|.+|-++...--.. .......+...|+++.|+|++ -
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence 844 33 445778899999999999999999999999999998875432110 011122234789999999997 8
Q ss_pred EEEEEECCCeEEEEECC-----c---------------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 433 RIMITSEDSKLRILDGV-----D---------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~-----~---------------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
++++|+.|+..+|+..- + ....+ ....+.+..+.|+|+|..|+-.+.|..+.+=|...
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99999999999998621 0 01111 13567899999999999999999999999999877
Q ss_pred CC
Q 006424 493 LC 494 (645)
Q Consensus 493 ~~ 494 (645)
+.
T Consensus 238 p~ 239 (361)
T KOG1523|consen 238 PS 239 (361)
T ss_pred Cc
Confidence 63
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=4.6e-13 Score=124.71 Aligned_cols=280 Identities=12% Similarity=0.240 Sum_probs=185.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
..+++|+.|..-++.|.++| .+||+++....... ..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~-------------------------------------------r~ 43 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------------------------------------------RQ 43 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh-------------------------------------------hc
Confidence 45599999999999998888 89999875211100 00
Q ss_pred eccCccCeEEEEEcCCCeEE-EEeCC------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 283 LHGHKGDVLDLAWSNSNYLL-SCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~~l~-s~s~d------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
+..-.-.+.-+-| ..++|+ .|+.+ ..|.|||=...+++..+....+|.++.+.+ +.+++.- .+.|+||
T Consensus 44 ~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~Vy 118 (346)
T KOG2111|consen 44 FIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVY 118 (346)
T ss_pred cccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEE
Confidence 0000011111111 123332 34333 479999988888999999999999999965 4555554 6789999
Q ss_pred eCCC-CcEEE---eeccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCC
Q 006424 356 GVCE-KRVVD---WADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 356 d~~~-~~~~~---~~~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.... .+... ....+....+++-+.+..+||. |..-|.|++-|+...... ...+. .|.+.|.|++++.+
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~------AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN------AHDSDIACVALNLQ 192 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE------cccCceeEEEEcCC
Confidence 9874 33332 2222334544443334444544 456799999999866542 22232 34589999999999
Q ss_pred CCcEEEEEECCCe-EEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC--------
Q 006424 430 ESQRIMITSEDSK-LRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-------- 498 (645)
Q Consensus 430 g~~~l~~~s~dg~-I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~-------- 498 (645)
| .++|++|..|+ |||||..+ .+..++.-.....|.+++|||++.+||++|+.|+++|+.+........
T Consensus 193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~ 271 (346)
T KOG2111|consen 193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK 271 (346)
T ss_pred c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence 8 89999999986 79999774 455555555677899999999999999999999999999976432222
Q ss_pred -----cccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccc
Q 006424 499 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRD 538 (645)
Q Consensus 499 -----~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~ 538 (645)
+...+..+...|+ +.|....++|..+...++..+.|+..+
T Consensus 272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 1222334444555 667777888988855555556655433
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=4.4e-15 Score=146.41 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=173.3
Q ss_pred cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcE-EEEEEee------CCCCEEEEEeCCCcEEEEe
Q 006424 285 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV-TCVQFNP------IDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v-~~l~~~p------~~~~~l~s~s~dg~i~vwd 356 (645)
.|...|.|+.|+...-++..+.|..+.+|.--+........ ....+ +.+..-+ .....|+.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 46677779999877666666777777776543332222221 11111 1111111 1235688899999999987
Q ss_pred CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
-...-......|.+.+.+-.|+|+|.-|+++++||.|++|.-.+.-.... .+ ...+|.|++|.|+....+++
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl---~Q-----~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTV---VQ-----NEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHH---hh-----cCceeEEEEECCCCCceEEe
Confidence 65544455778999999999999999999999999999998765432111 11 23789999999997555555
Q ss_pred EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcE
Q 006424 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 516 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 516 (645)
.+ +.+.|=.+......++-..|.+-|.++.|++..+.+++|++|-+.+|||-....... .-.++.++
T Consensus 164 ~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~-----------S~~~ey~I 230 (737)
T KOG1524|consen 164 QG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT-----------SAAEEYAI 230 (737)
T ss_pred cC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc-----------CChhccce
Confidence 44 455555555555566666799999999999999999999999999999976542111 11245678
Q ss_pred EEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCC
Q 006424 517 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW 576 (645)
Q Consensus 517 ~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~ 576 (645)
+.++|+|+..++.. +....+ +....-+.+..++||+||.-++.++.
T Consensus 231 TSva~npd~~~~v~-S~nt~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 231 TSVAFNPEKDYLLW-SYNTAR-------------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeeeeccccceeee-eeeeee-------------ecCCCccceEEEEEcCCCceeecccc
Confidence 89999999443331 111111 12334466788899999998877665
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=4.4e-14 Score=131.60 Aligned_cols=297 Identities=15% Similarity=0.187 Sum_probs=194.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284 (645)
Q Consensus 205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (645)
-++|||+|+|+|+++.- .+.|-|..+.+ ..+.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq---------------------------------------------~~qlf- 45 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ---------------------------------------------LHQLF- 45 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh---------------------------------------------HHHHH-
Confidence 47899999999999876 67777776521 11111
Q ss_pred cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCC-CEEEEEeCCCcEEEEeCCCC
Q 006424 285 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~-~~l~s~s~dg~i~vwd~~~~ 360 (645)
.--..|..+.|..+. .|.....|+.|.+|++...+-...++ ....+..++|+| +| .+|.+...|-.|.+|.+.+.
T Consensus 46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence 124567778888776 46667888999999999888877775 667899999999 77 55667777999999999998
Q ss_pred cEEEeeccCCCeEEEEEccCCCEEEEEecCC------------------------------------eEEEEEecCCcee
Q 006424 361 RVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------------------TCHFYKASGNDLK 404 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg------------------------------------~i~iwd~~~~~~~ 404 (645)
+...+...+..+..++|+|||++.+..+... .+.+||.--...
T Consensus 125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk- 203 (447)
T KOG4497|consen 125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK- 203 (447)
T ss_pred eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-
Confidence 8887777777788999999999988876422 233333221111
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------------cce-----------------
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVI----------------- 452 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------------~~~----------------- 452 (645)
...++. +-.+..+.|+|.+ +++++|+.|+.+||.+-- .+.
T Consensus 204 --v~aYe~-----~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 204 --VYAYER-----GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred --eeeeee-----ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 111111 2568889999987 899999999999885400 000
Q ss_pred ------------------------------eeEe----ecCCCCCeEEEEEecCCCEEEEEeCC--ccEEEEeCCCCCcC
Q 006424 453 ------------------------------HKFK----GLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDELCFP 496 (645)
Q Consensus 453 ------------------------------~~~~----~~~~~~~i~~v~~sp~~~~l~t~s~d--g~I~iwd~~~~~~~ 496 (645)
+.++ .......+.-++|++|..+++|-.+. ..+.+||++..+..
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence 0000 00112345678999999999997653 68999999877532
Q ss_pred CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCc
Q 006424 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRG 572 (645)
Q Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~ 572 (645)
..... ..++.+..|.|....|+.+.+... ...|....... ..+..+-.+..+.+..+|..++
T Consensus 356 avLiQ-----------k~piraf~WdP~~prL~vctg~sr---LY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 356 AVLIQ-----------KHPIRAFEWDPGRPRLVVCTGKSR---LYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred hhhhh-----------ccceeEEEeCCCCceEEEEcCCce---EEEEcCCCceEEecCCCCceeeeEEecCCCcEEE
Confidence 22211 234677778888777775554322 34555533222 1122222345555666666444
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=2.2e-13 Score=129.21 Aligned_cols=236 Identities=11% Similarity=0.188 Sum_probs=173.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
...+..+.|+.+...|..|+.|| .++|+......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--------------------------------------------- 38 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--------------------------------------------- 38 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence 34577888999999999999999 68887765211
Q ss_pred ceeeccCccCeEEEEEcCCCeEEEEeCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 280 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
..........|.-+-|+. .+++..+.+ ..+++.+.+.+..+..+.....|.++.++ .+.|+++-.+ .|+|||+
T Consensus 39 ~~~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI 113 (391)
T KOG2110|consen 39 CFSKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDI 113 (391)
T ss_pred hhcccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc---cceEEEEEcc-cEEEEec
Confidence 000111122344455553 344444444 45999999999999999889999999996 4566666554 4999999
Q ss_pred CCCcEEEe----eccCCCeEEEEEccCCCEEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 358 CEKRVVDW----ADVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 358 ~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
++.+++.. ..+...+.++++++.+.+++.- ...|.|.+||..+-.. ...+.. |.+.+.+++|+++|
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~a------H~~~lAalafs~~G- 185 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINA------HKGPLAALAFSPDG- 185 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEe------cCCceeEEEECCCC-
Confidence 99887763 2455567778887777788874 3468999999987654 333333 45899999999998
Q ss_pred cEEEEEECCCe-EEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 432 QRIMITSEDSK-LRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 432 ~~l~~~s~dg~-I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+||+++..|+ |||+.+.+....+.. -.....|.+++|+|++++|++.|+.++|+||.++...
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 89999999986 689998755444443 2234568899999999999999999999999998654
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.9e-14 Score=135.17 Aligned_cols=263 Identities=14% Similarity=0.108 Sum_probs=193.6
Q ss_pred ccCcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 199 HKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 199 H~~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
-...|+.++|.-+++ .|...+.|..+..+.+........
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~--------------------------------------- 94 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS--------------------------------------- 94 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc---------------------------------------
Confidence 445688888876654 555555666677666654322110
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCCEEEEEeCC--C
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--G 350 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--g 350 (645)
...+........+|..++.. ++.|++|-.+|.+.+|..+.+. .+..+.....+..+.-++....++++|+.. .
T Consensus 95 ~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 95 LDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccccccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhccc
Confidence 01122334456677777654 5789999999999999987543 233344456677787788677888889988 8
Q ss_pred cEEEEeCCCCcEEEe----------eccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 351 KVRIWGVCEKRVVDW----------ADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~----------~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
.+.+||+...+.+.. ...+-+++++.|-+. ...|++++.-+.+++||.+....+...+.+..
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------ 247 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------ 247 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------
Confidence 899999988743321 112345778899887 78999999999999999999988888887775
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
.+++++...|+| +++++|..-+.+..+|++....... .....+.|.++..+|.+++++++|-|..++|+|+++.+...
T Consensus 248 ~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 248 NPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CcceeeeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 789999999998 8999999999999999986544333 33468899999999999999999999999999999865544
Q ss_pred CcccCCcceee
Q 006424 498 SKQKNSVRSCE 508 (645)
Q Consensus 498 ~~~~~~~~~~~ 508 (645)
....+....++
T Consensus 327 kvYvKs~lt~i 337 (412)
T KOG3881|consen 327 KVYVKSRLTFI 337 (412)
T ss_pred hhhhhccccEE
Confidence 44444433333
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.5e-14 Score=140.08 Aligned_cols=290 Identities=16% Similarity=0.216 Sum_probs=189.9
Q ss_pred ccccccccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
+.+..+++.| +|...-+.|..+|||+|+ |||..--.|++||+.+............. .....+..+.+ ...
T Consensus 39 ~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~------V~feiLsDD~S-K~v 110 (703)
T KOG2321|consen 39 RQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV------VDFEILSDDYS-KSV 110 (703)
T ss_pred HHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccc------eeEEEeccchh-hhe
Confidence 3344455556 488889999999999975 56667789999999874332111110000 00011111111 111
Q ss_pred eecCCCceeccCC--CceeeccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCC
Q 006424 266 VVIPDEVFQIEES--PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDN 341 (645)
Q Consensus 266 ~~~~~~~~~~~~~--~~~~l~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~ 341 (645)
..-.+.......+ ....+ .-...-.+++++ ++.-|+.++....|+=.+++.|+.+..+.. ...++++..++ ...
T Consensus 111 ~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hg 188 (703)
T KOG2321|consen 111 FLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHG 188 (703)
T ss_pred EeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccc
Confidence 1111111000000 00000 011233455665 333566666667899999999999999974 47899999999 788
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEee-------ccCC-----CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 342 YFISGSIDGKVRIWGVCEKRVVDWA-------DVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~-----~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
+|++|+.+|.|..||.+....+... .+.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.......-
T Consensus 189 Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd- 267 (703)
T KOG2321|consen 189 LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD- 267 (703)
T ss_pred eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-
Confidence 9999999999999999987654422 2222 39999999999999999999999999999877543221
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
|. ...+|..+.|.+.+.+--+.+.....++|||-..... +........+..+|+-|++.+++++-+++.+..|=
T Consensus 268 -h~----~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 268 -HG----YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred -cC----CccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 11 2478999999887544455555667899999654433 33333566799999999999999999998888877
Q ss_pred CCCC
Q 006424 490 YDEL 493 (645)
Q Consensus 490 ~~~~ 493 (645)
+...
T Consensus 342 iP~L 345 (703)
T KOG2321|consen 342 IPSL 345 (703)
T ss_pred cccc
Confidence 6553
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.62 E-value=6.3e-15 Score=147.86 Aligned_cols=207 Identities=18% Similarity=0.294 Sum_probs=154.4
Q ss_pred ccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
....|+.+.|.| |...||.++.||.|++|.+..+.... ...
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------------------------------~~~ 667 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------------------------------NEM 667 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------------------------------ccC
Confidence 345799999999 67799999999999999998643211 124
Q ss_pred CCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
.+...+.+|...|+++.|+|- +.|+++++|-+|++||+.+++....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence 566788899999999999985 58999999999999999998876666 6999999999999 9999999999999999
Q ss_pred EeCCCCcEEEeec---cCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424 355 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 355 wd~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
|..++++.-...+ ....--.+.|--+|+++++.+.|. .|.+||..+-... .....+... ..+.--.+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y 821 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY 821 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence 9998765432211 122334567888999988877654 6888887754421 111111110 11122235
Q ss_pred cCCCCcEEEEEECCCeEEEEECC
Q 006424 427 SRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
.+|...++++|-.|..|++|.+-
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEec
Confidence 56655788889999999999864
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3.7e-14 Score=140.25 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=131.2
Q ss_pred CCC-eEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----------
Q 006424 297 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---------- 360 (645)
Q Consensus 297 ~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~---------- 360 (645)
+.+ -++.|-.-|.|.+.|....+..+.+. ....|+|+.|-|.+...++++-.+|.+++||..-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 345 57788888899999876543333332 45789999999988888999999999999976310
Q ss_pred ----c---------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 361 ----R---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 361 ----~---------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
. +..+.-..+.|+.++|+|||++||+.+.||.++|||..+..+.-. ....-+..
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL 335 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL 335 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence 0 111222345788999999999999999999999999987664321 11123678
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
.|++|+||| +++++|++|..|.||...+......++.|..+|..++|+|
T Consensus 336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999998 8999999999999999998888889999999999999983
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.5e-14 Score=149.76 Aligned_cols=254 Identities=20% Similarity=0.288 Sum_probs=176.1
Q ss_pred CcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 201 GCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 201 ~~V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..|+.+.+-. |..+|++|+.||.|+||+-..... ...++... ..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------------~~~eLVTa-------------------w~ 1155 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------------KKPELVTA-------------------WS 1155 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc---------------CCceeEEe-------------------ec
Confidence 4688888865 455999999999999997432110 00000000 00
Q ss_pred Ccee-eccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 279 PLQE-LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 279 ~~~~-l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
.+.. +.+-.+.=.-+.|... |+|+++|.-..|+|||.+..+++..+. ....|+++.-+-..++.+++|..||.|++
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEE
Confidence 0110 1111111133566643 688888878999999999888887764 55678887766556899999999999999
Q ss_pred EeCCCCc----EEEeeccCCC--eEEEEEccCCC-EEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424 355 WGVCEKR----VVDWADVRDV--ISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 355 wd~~~~~----~~~~~~~~~~--v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
||.+... +.....|... |..+.+.+.|- .+++|+.+|.|++||++..... ...+..+. ..++..+++..
T Consensus 1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTV 1312 (1387)
T ss_pred eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeee
Confidence 9998643 3345667666 99999998775 4999999999999999985221 11222211 11346899999
Q ss_pred cCCCCcEEEEEECCCeEEEEECC-cceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 427 SRDESQRIMITSEDSKLRILDGV-DVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++.. ..+++|+. +.|+||++. +....++. ....+.+.+++|+|..-++|+|+.|.+|.||.....
T Consensus 1313 H~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1313 HEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9986 68888888 999999965 22222221 124567899999999999999999999999987655
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=146.12 Aligned_cols=272 Identities=12% Similarity=0.169 Sum_probs=195.9
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 366 (645)
.|..++|-||| .|+.+. +..+.+||...|..+.++. |.+.|+|++|+. +|+.+++|+.|..|.+|.-.-.-.+. .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK-Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee-e
Confidence 89999999998 444433 3579999999999999885 999999999999 99999999999999999865443333 4
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.|.+.|.|+.|+|-...+++++-. ..-+|.......... . ...++.+.+|..|| ++++.|-.+|+|.+-
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~----k-----ss~R~~~CsWtnDG-qylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH----K-----SSSRIICCSWTNDG-QYLALGMFNGTISIR 159 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh----h-----hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence 688999999999988888887643 456777665443221 1 13678999999998 899999999999998
Q ss_pred ECC-cce-eeEeecCCCCCeEEEEEecCC-----CEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424 447 DGV-DVI-HKFKGLPKSGSQMSASFTTTG-----KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 519 (645)
Q Consensus 447 d~~-~~~-~~~~~~~~~~~i~~v~~sp~~-----~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 519 (645)
+.. +.. ..-+..+...+|.+++|+|.. ..++......++.++.+................|+.+.++|....+
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 743 222 222223467799999999964 5788888899999999876544333334444455556666665555
Q ss_pred ecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424 520 QWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 588 (645)
Q Consensus 520 ~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~ 588 (645)
.-+..+..+++- +++.. ......+.++-.++.-|+++..+-+-. ||+|-.+++..
T Consensus 240 GGsdk~L~~fTR--~GvrL-----------GTvg~~D~WIWtV~~~PNsQ~v~~GCq-DGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR--DGVRL-----------GTVGEQDSWIWTVQAKPNSQYVVVGCQ-DGTIACYNLIF 294 (1081)
T ss_pred ccCCCceEEEee--cCeEE-----------eeccccceeEEEEEEccCCceEEEEEc-cCeeehhhhHH
Confidence 544444333321 11110 112234567778888999998877777 89999998753
No 208
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.2e-15 Score=146.34 Aligned_cols=222 Identities=20% Similarity=0.248 Sum_probs=154.9
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
.....+|.+|.++|.|+++++++.++.+|+.||+|+.|++....- +.
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d------p~--------------------------- 380 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD------PD--------------------------- 380 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC------cc---------------------------
Confidence 345677999999999999999999999999999999998763100 00
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s 345 (645)
..++ .......+.||.+.|+.+++|... +|++|+.||+++.|+.....+ .+|+ ..+....+.+-.....+.++
T Consensus 381 -ds~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~ 457 (577)
T KOG0642|consen 381 -DSYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA 457 (577)
T ss_pred -cccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh
Confidence 0000 012346788999999999999765 899999999999999876666 4443 23344555554311122333
Q ss_pred EeCCCcEEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 346 GSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
...-+.--+++........+.. ....+.-+.++|.+...+++..|+.|+++|..+........ .|
T Consensus 458 s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-------a~ 530 (577)
T KOG0642|consen 458 SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-------AH 530 (577)
T ss_pred hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-------ec
Confidence 2222333333333333222211 12457778889999999999999999999999887644322 23
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 455 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~ 455 (645)
...++++++.|+| -+|++++.|+.+++|.+.......
T Consensus 531 ~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 531 KDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cceecceeecCCC-ceEEeecCCceeehhhccchheee
Confidence 4789999999998 799999999999999976444333
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.2e-13 Score=127.54 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=183.0
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.-.+..++|++.-.-+|++..|-.|++|+-.. ..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss----------------------------------------------t~ 131 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----------------------------------------------TC 131 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC----------------------------------------------CC
Confidence 34578899999777889999999999998664 11
Q ss_pred ceeec-cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCC----e--------EEEEec--CCCcEEEEEEeeCCCCE
Q 006424 280 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN----Q--------CLNVFD--HHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 280 ~~~l~-~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~----~--------~~~~~~--~~~~v~~l~~~p~~~~~ 342 (645)
...++ .....|+|++|-|.+ .|+.|+. +-|.+|..... . ....+. .+.+|++++|++ |+..
T Consensus 132 pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~ 209 (445)
T KOG2139|consen 132 PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI 209 (445)
T ss_pred CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence 12222 234679999999875 5666666 55999976421 1 111222 336899999999 9999
Q ss_pred EEEEeC-CCcEEEEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 343 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 343 l~s~s~-dg~i~vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+++++. |..|.+||..++....+. ...+.++-+.|+|||.+|++++-|+..++|+....-. .+..... .+.
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr 282 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR 282 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence 999886 567999999998887765 4566788999999999999999999999996543322 1222222 258
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCc--ce--------eeE--------eec----CCCCCeEEEEEecCCCEEEE
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VI--------HKF--------KGL----PKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~--------~~~--------~~~----~~~~~i~~v~~sp~~~~l~t 478 (645)
|...+|+|+|+.+|++.+....++-..... .. ... ... -..+.+.+++|+|.|.+||+
T Consensus 283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 999999999977777777766665443110 00 000 001 12467889999999999998
Q ss_pred EeCC--------ccEEEEeCCCCCcCCC----cccCCcceeeeee---cCCcEEEEecCCCCc
Q 006424 479 IGDD--------CRVYVWNYDELCFPSS----KQKNSVRSCEHFF---SEGVSVAVQWPGIGT 526 (645)
Q Consensus 479 ~s~d--------g~I~iwd~~~~~~~~~----~~~~~~~~~~~~~---~~g~~~~v~~s~~~~ 526 (645)
.-.. +.|.+||......... .........+.|+ .++..+.++|+.+..
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri 425 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI 425 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence 6543 3467777654421111 0111123344454 467888888887654
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.4e-14 Score=149.01 Aligned_cols=234 Identities=14% Similarity=0.087 Sum_probs=144.5
Q ss_pred CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCE
Q 006424 307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 383 (645)
Q Consensus 307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~ 383 (645)
+..|.+||.+.........+...+...+|+| +++.|+.++.+ ..|++||+.+++...+....+....++|+|||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4689999987655444445777899999999 99998887654 3699999998875554444445567899999998
Q ss_pred EEEEe-cCCeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeec
Q 006424 384 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL 458 (645)
Q Consensus 384 l~~g~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~ 458 (645)
|+.+. .+|.+.+| |+.+... ..+. . +...+....|+|+|..+++++..++...||++. .......
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt--~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-- 331 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTP--SQLT--S----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-- 331 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCe--Eeec--c----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence 88765 68876666 4444332 2221 1 124577899999985445555567888888753 2211111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424 459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD 538 (645)
Q Consensus 459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~ 538 (645)
.+.. ....|+|||++|+.++.++ +.+||+.++......... ....++|+|+|..++..+.++...
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~------------~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF------------LDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC------------CCCCceECCCCCEEEEEEcCCCce
Confidence 1222 3578999999999887765 566999877422111000 012355778877777655543322
Q ss_pred cCcccccccc-CCccCCCCccccCccccC
Q 006424 539 CSQKWDNLET-APWIRDSERFSLGSWFSN 566 (645)
Q Consensus 539 ~~~~w~~~~~-~~~~~~~~~~~~~~~fs~ 566 (645)
....++.... ...+..++..+...+|||
T Consensus 397 ~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 397 VLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 2222211111 112334445555566665
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.4e-14 Score=139.82 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=150.5
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424 291 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 367 (645)
Q Consensus 291 ~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~- 367 (645)
.+++|+.+| .+++++.||++|+|+..+...+... .|...|.++.|+| |+++|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 788999886 9999999999999997766655444 5999999999999 99999999999 89999999986555332
Q ss_pred --cCCCeEEEEEccCC-----CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 368 --VRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 368 --~~~~v~~l~~sp~g-----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.+.....+.|+.++ ..++.....+.|..||+...... ....... .......|++++.+++| ++++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-KIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-hhhccCcceeEEEcCCC-cEEEEeccC
Confidence 34456677888776 33333445667888777644431 1111111 11112579999999998 899999999
Q ss_pred CeEEEEECCcceeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 441 SKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 441 g~I~iwd~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
|.|-|++..++...+ ..+.|...|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999987654433 3356888999999999999999999999998887754
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.6e-14 Score=141.43 Aligned_cols=246 Identities=19% Similarity=0.238 Sum_probs=170.1
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCC-CEEEEEeCCCcEEEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDD-NYFISGSIDGKVRIW 355 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~-~~l~s~s~dg~i~vw 355 (645)
...+.||++.|+|+.|+.+| +|++||.|-.+.|||.-..+.+..+ +|...|.++.|-|..+ .++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 46788999999999999998 9999999999999999988888877 4999999999999544 468889999999999
Q ss_pred eCCCCc-----------EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccc---cccCCCC
Q 006424 356 GVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNK 420 (645)
Q Consensus 356 d~~~~~-----------~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~ 420 (645)
|+...+ ...+..|...|..++-.|++ ..+.++++||+++-||++....-......+.. ....--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 997421 12256678889999999988 78999999999999999863321110000000 0001134
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC--
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-- 498 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~-- 498 (645)
..|+..+|..+.+|++|+.|--.++||.+.....+...... .++|- -.++.|+-|--...+....
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~------~~~pp-------~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM------NTCPP-------KDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc------cCCCC-------cccchhheecCccccCccccc
Confidence 67899999988999999999999999976544444331110 01110 0122222221111100000
Q ss_pred cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424 499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD 538 (645)
Q Consensus 499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~ 538 (645)
.+.........|+|+|.-+.|.|+....+|+.+..+....
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0111123456788999889999999999999887775543
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.8e-12 Score=135.03 Aligned_cols=200 Identities=14% Similarity=0.182 Sum_probs=136.5
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEe---CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCC--cEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR 353 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg--~i~ 353 (645)
+.+..+...+.+.+|+|+| .|+..+ .+..|.+||+.+++..........+..+.|+| +++.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence 4445567789999999998 666543 24579999998887655444444556789999 88877754 4444 599
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-CeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+||+.+++...+..+...+....|+|||+.|+..+.+ |...+| |+.+... ..+... ........|+|+|
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence 9999998888877776778899999999988777654 444555 5554432 222222 1345578899998
Q ss_pred CcEEEEEEC-C--CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCcc---EEEEeCCCC
Q 006424 431 SQRIMITSE-D--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDEL 493 (645)
Q Consensus 431 ~~~l~~~s~-d--g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~---I~iwd~~~~ 493 (645)
.+++..+. + ..|.+||+.... ..+.. ........|+|||++|+.++.++. +++++++..
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 55655443 3 358888976432 22221 122346789999999999987764 777787654
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=9.1e-15 Score=151.25 Aligned_cols=282 Identities=18% Similarity=0.273 Sum_probs=194.6
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
+.++.+.||...|+|+.|...| ++++|+.|..|+||..+++.++... +|.+.++.++.+. +.-++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEE
Confidence 4456778999999999999887 8999999999999999999998888 5999999999987 77789999999999999
Q ss_pred eCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 356 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 356 d~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
.+..+..+. +.+|.+.|++++|+|-. +.+.||++++||.+-..... ............+.++.|...+ ..+
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y---~prp~~~~~~~~~~s~~~~~~~-~~f 331 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY---VPRPLKFTEKDLVDSILFENNG-DRF 331 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccccccc---CCCCCCcccccceeeeeccccc-ccc
Confidence 999998876 68999999999999954 67889999999998211111 1111111223567788888887 789
Q ss_pred EEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424 435 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 513 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 513 (645)
++++.|+.-..|....... +...+.-+.++.+ ..+.+++-.+-.+++|++.++...-.. ..+.
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l----------~ghs 395 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL----------MGHS 395 (1113)
T ss_pred ccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh----------cccc
Confidence 9999999999887542211 1111111222222 256677778899999999888422111 0111
Q ss_pred CcEEEEecCCCCcccc-ccCCCCccccCccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424 514 GVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 514 g~~~~v~~s~~~~~l~-~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
..+.++.++|-...++ +.+.| +...+|+..++.+ ...+ ...+....||+||+.++-.+. -|.+.|.....+
T Consensus 396 d~~yvLd~Hpfn~ri~msag~d---gst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~-hgql~i~g~gqs 470 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYD---GSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDD-HGQLYILGTGQS 470 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCC---CceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCC-CCceEEeccCCC
Confidence 2233444555444443 22222 3345566655544 1122 344667799999997766555 677877765444
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.2e-12 Score=134.50 Aligned_cols=203 Identities=15% Similarity=0.189 Sum_probs=142.0
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeC---CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCc--
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK-- 351 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~-- 351 (645)
..+.+..|...+.+.+|+|+| .|+..+. +..|.+||+.+++......+...+.+.+|+| +++.|+ +.+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCce
Confidence 345666788899999999998 6666553 4689999999887755555666778899999 887765 5555554
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
|++||+.++....+..+........|+|||+.++..+. +| .|+++|+.+.... .+... ...+....|+|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Sp 343 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSP 343 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECC
Confidence 88889999888887777777788999999998887764 33 5777787655432 22211 13456688999
Q ss_pred CCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC------ccEEEEeCCCC
Q 006424 429 DESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDEL 493 (645)
Q Consensus 429 ~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d------g~I~iwd~~~~ 493 (645)
+| ..++..+.+ ..|.+||.......... ....+....|+|||+.|+..+.+ ..++++|++++
T Consensus 344 dG-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 344 RG-DLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CC-CEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 98 566655443 36888886532221111 22346778999999998776543 25777787654
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.2e-12 Score=133.84 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=133.4
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCcEEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRI 354 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~i~v 354 (645)
.+.+..+...+.+.+|+|++ .|+..+.+ ..|.+||+.+++..........+.+..|+| +++.|+ +.+.++...+
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceE
Confidence 34455677889999999998 67666543 359999999887655544555667899999 888776 5566776555
Q ss_pred E--eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 355 W--GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 355 w--d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
| |+.++....+..+........|+|||+.++..+. +|...+|.+.........+...+ .......|+|+|
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG- 339 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG- 339 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-
Confidence 5 5666666666666666677899999998876654 56667776643222222222222 223457899998
Q ss_pred cEEEEEECCC---eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc---cEEEEeCC
Q 006424 432 QRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD 491 (645)
Q Consensus 432 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~ 491 (645)
++++..+.++ .|.+||+......... .........|+|||++|+.++.++ .+++.+.+
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 6676665543 6999997643222211 222346789999999998887543 34454553
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=5.3e-12 Score=117.91 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=182.8
Q ss_pred CcEEEEEECCCCCEEEE-EeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 201 GCIWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
+.|..+.|..|..++++ ...|+.|.+|++...+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--------------------------------------------- 83 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--------------------------------------------- 83 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------------------------
Confidence 45778899988876554 57789999999976322
Q ss_pred ceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--------
Q 006424 280 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-------- 349 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-------- 349 (645)
...+.....++.+++|+|+| .|.+...|-.|.+|.+.+.+....--....+..++|+| ++++.+.++.-
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHH
Confidence 33445567789999999998 67788899999999998877765544445668889999 88887766531
Q ss_pred ----------------------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424 350 ----------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 350 ----------------------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~ 401 (645)
..+.+||---.-.+......-.+..+.|+|.++++++|+.|+.+++.+--+.
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 2233444221111122233356888999999999999999998876432110
Q ss_pred ceee--------------------------------------------------e----EEeec-----cccccCCCCeE
Q 006424 402 DLKL--------------------------------------------------E----KVDFH-----DRKKTSGNKIT 422 (645)
Q Consensus 402 ~~~~--------------------------------------------------~----~~~~~-----~~~~~~~~~i~ 422 (645)
+... + ...++ .........+.
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence 0000 0 00000 00111224566
Q ss_pred EEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 423 GIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
-++|++|. .++++-... +.+.+||++... .........+|....|+|....|+.+....++++|..........
T Consensus 323 ~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-- 398 (447)
T KOG4497|consen 323 KLAFSCDS-TYAATRNDKYPNALWLWDLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-- 398 (447)
T ss_pred eeeecCCc-eEEeeecCCCCceEEEEechhhh-hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--
Confidence 78999995 666665443 689999987432 222223567899999999999999988888999998765311111
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
..+.-.+..+.|.-+|..++.++.|..
T Consensus 399 ---------P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 399 ---------PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ---------CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 111224667889888888887766644
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.1e-12 Score=135.36 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=137.8
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV 352 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg--~i 352 (645)
.+.+..|...+.+.+|+|++ .|+.++.+ ..|.+||+.+++............+..|+| +++.++ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence 34555677789999999998 67766643 469999998887655444455566889999 887665 455555 59
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CCe--EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
++||+.+++...+..+.......+|+|||+.++.++. +|. |+++|+.+... ..+...+ ......+|+|+
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g------~~~~~~~~SpD 346 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQG------NYNARASVSPD 346 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCC------CCccCEEECCC
Confidence 9999999988777766666678999999998887764 454 55556555432 2222222 23446899999
Q ss_pred CCcEEEEEECC-C--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424 430 ESQRIMITSED-S--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s~d-g--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~ 493 (645)
| +.++..+.+ + .|.+||.......... +........|+|||++|+..+.+ +.|++++++..
T Consensus 347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8 566655433 2 6899997643222111 22234567899999998877653 46788887644
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=7.6e-12 Score=118.41 Aligned_cols=256 Identities=13% Similarity=0.270 Sum_probs=164.6
Q ss_pred cCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 200 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 200 ~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
+..|+|++|-|.+ +-|+.|+..| |.+|......-...... .......
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~-------------------------------~~s~~~~ 187 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR-------------------------------MMSTHHL 187 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc-------------------------------cccccch
Confidence 4579999999964 5788888777 89998764111000000 0000011
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.+....|| .+|+++.|.+|| .+++++. |..|.|||.+++..+... ...+.++-+.|+| ++++|+.++.|+..++|
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW 265 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence 22334456 789999999998 7887776 578999999998877666 3556788999999 99999999999999999
Q ss_pred eCC-CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--eee------E----Eee-----ccccccC
Q 006424 356 GVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLE------K----VDF-----HDRKKTS 417 (645)
Q Consensus 356 d~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~~~------~----~~~-----~~~~~~~ 417 (645)
+.. +-......-..+.|...+|+|+|++|+.++.. .-.+|.+.-... ... . ..+ ......-
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~ 344 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC 344 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence 544 44444455556699999999999987765532 334444421110 000 0 000 0111122
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCC--------eEEEEECCc-ceeeEe--ecCCCCCeEEEEEec---CCCEEEEEeCCc
Q 006424 418 GNKITGIQFSRDESQRIMITSEDS--------KLRILDGVD-VIHKFK--GLPKSGSQMSASFTT---TGKHIISIGDDC 483 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg--------~I~iwd~~~-~~~~~~--~~~~~~~i~~v~~sp---~~~~l~t~s~dg 483 (645)
++.+.+++|.|.| .+|++.-..+ .|.+||.+. ....+. +........-++|+| ++.+|..+=+.|
T Consensus 345 cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 345 CGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG 423 (445)
T ss_pred cCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence 5778899999998 7888876553 366788663 222222 222223345667766 566777776778
Q ss_pred cEEEEeCC
Q 006424 484 RVYVWNYD 491 (645)
Q Consensus 484 ~I~iwd~~ 491 (645)
.+.-|++.
T Consensus 424 riq~ypl~ 431 (445)
T KOG2139|consen 424 RIQRYPLT 431 (445)
T ss_pred ceEeeeeE
Confidence 88877764
No 220
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=9.2e-12 Score=118.39 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=156.6
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE-EecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcE
Q 006424 287 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRV 362 (645)
Q Consensus 287 ~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~ 362 (645)
...+..+.|+.+. .|..|+.|| .+++..+...... .......|..+-|+ ..++|..+.+. .+++++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 3456666788776 455566665 6777765433311 11233456666674 46666666554 499999988887
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE-E-CC
Q 006424 363 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-S-ED 440 (645)
Q Consensus 363 ~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~-s-~d 440 (645)
+.-......|.++.++. +.|++.-.+ .|+|||+++.+......... .+...+..+++++.+ .+++.- + ..
T Consensus 81 ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~----~n~~gl~AlS~n~~n-~ylAyp~s~t~ 152 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTP----PNPKGLCALSPNNAN-CYLAYPGSTTS 152 (391)
T ss_pred EEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccC----CCccceEeeccCCCC-ceEEecCCCCC
Confidence 77667778899998865 355555544 49999999887643321111 123456666666665 455543 3 34
Q ss_pred CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc-EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424 441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 519 (645)
Q Consensus 441 g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 519 (645)
|.|.+||..+.........|.+.+.+++|+++|.+|||+|+.|+ |+|+.+.+++....-+.... + -.+..+
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~------~~IySL 224 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--P------VSIYSL 224 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--e------eEEEEE
Confidence 89999999877777777779999999999999999999999886 79999998864443332211 1 226778
Q ss_pred ecCCCCccccccCCCCcccc
Q 006424 520 QWPGIGTEQKSLCSSSLRDC 539 (645)
Q Consensus 520 ~~s~~~~~l~~~~~~~~~~~ 539 (645)
+|+|++.+|.+.++......
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred EECCCCCeEEEecCCCeEEE
Confidence 88888888887666544443
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.3e-12 Score=133.58 Aligned_cols=219 Identities=13% Similarity=0.061 Sum_probs=147.1
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
+.+..+...+.+.+|||||+.|+..+. +..+.+|++.++..
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------------------------------------ 235 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------------------------ 235 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------------------------------------
Confidence 335557778999999999998887643 34688898876321
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEEE-EeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s-~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+..+. +.+....|+|+| .|+. .+.+| .|.+||+.+++......+...+....|+| +++.|+.+
T Consensus 236 -------~~l~~~~---~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~ 304 (429)
T PRK03629 236 -------RQVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT 304 (429)
T ss_pred -------EEccCCC---CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence 1112222 334467999998 5554 34455 58899999887766665656778899999 99988777
Q ss_pred eCC-C--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~d-g--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.+ + .|+++|+.++....+...........|+|||++++..+.+ ..|.+||+.+..... + ... ..
T Consensus 305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--L--t~~-----~~ 375 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--L--TDT-----FL 375 (429)
T ss_pred eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--e--CCC-----CC
Confidence 654 3 4555677777766665555556778999999998876543 357888987765321 1 111 12
Q ss_pred eEEEEEcCCCCcEEEEEECCCe---EEEEECCc-ceeeEeecCCCCCeEEEEEec
Q 006424 421 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~---I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp 471 (645)
.....|+||| ..++.++.++. +.++++.. ....+.. +.+.+...+|+|
T Consensus 376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence 3357899998 67777776653 66777642 2333333 566778888887
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=1.1e-13 Score=134.79 Aligned_cols=230 Identities=16% Similarity=0.241 Sum_probs=181.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
-.-..+.|+.+|++|+.|+.-|.|-.+|+.+... .
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------------------------~ 164 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------------------------H 164 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee---------------------------------------------e
Confidence 3456889999999999999999999999987432 2
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
..+. -...|.++.|-.+..+++......++|||-. |..+..+.....|..+.|.| ..-+|++++..|.++.-|+.+|
T Consensus 165 ~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G 241 (545)
T KOG1272|consen 165 FEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG 241 (545)
T ss_pred eeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechh
Confidence 2222 3456888888877666667777899999964 77777777677899999999 7788999999999999999999
Q ss_pred cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
+++. +....+.+..++-+|-...+-+|...|+|.+|............ .|.++|.++++.++| ++++|++.
T Consensus 242 klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-------cH~g~V~siAv~~~G-~YMaTtG~ 313 (545)
T KOG1272|consen 242 KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-------CHRGPVSSIAVDRGG-RYMATTGL 313 (545)
T ss_pred hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-------hcCCCcceEEECCCC-cEEeeccc
Confidence 9876 44556778889999988899999999999999988766543322 234899999999998 89999999
Q ss_pred CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
|..++|||++...+...... ..+...+++|..| +++.|....|.||.
T Consensus 314 Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 314 DRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 99999999987654444432 4567788887655 33444566899994
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.1e-12 Score=114.58 Aligned_cols=187 Identities=16% Similarity=0.290 Sum_probs=143.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.|++|-..|..+-+++++.|+.+.-||+++ ++..+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~---------------------------------------------G~i~r 150 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLED---------------------------------------------GRIQR 150 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecC---------------------------------------------CEEEE
Confidence 589999999888788888999999999998 45568
Q ss_pred eeccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEec-----------CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 282 ELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----------HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----------~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
+++||++.|.++.-- .++.+++|+.||++++||.++++++..++ ...+|.+++. +...+++|+ .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-G 226 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-G 226 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-C
Confidence 899999999999984 45699999999999999999999988773 2345677776 456777765 5
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
..+.+|+++..+.......+..+..+.|.. +.+++++..+.+.-|.+.+.-.. .+... ....++..|+..
T Consensus 227 p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a--~ip~~------s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQA--NIPVE------STACYSASWQTS 296 (325)
T ss_pred CceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeeccEEEE--eccCC------ccceeeecccCC
Confidence 679999999999999999999999999864 46888888889999988753221 11111 134555556544
Q ss_pred CCcEEEEEECCCeEEEEE
Q 006424 430 ESQRIMITSEDSKLRILD 447 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd 447 (645)
--+++-.++....+.|+.
T Consensus 297 p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEEecccceeeeeee
Confidence 335666667777777664
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.3e-12 Score=134.60 Aligned_cols=205 Identities=14% Similarity=0.133 Sum_probs=130.2
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 384 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l 384 (645)
..|.++|...........+...+.+.+|+| +++.|+..+.+ ..|++||+.+++...+....+...+..|+|||+.+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 467777775444444446777899999999 99988877643 35999999998877666566677789999999988
Q ss_pred EE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC--Ccc-eeeEeecCC
Q 006424 385 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDV-IHKFKGLPK 460 (645)
Q Consensus 385 ~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~--~~~-~~~~~~~~~ 460 (645)
+. .+.+|...+|.+.........+ .. +........|+|||..+++++..++...+|.. ... ...+.. .
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~l--t~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~ 326 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRL--TQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T 326 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEEC--CC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence 75 5678877777654322112211 11 12345667899998444444444566666653 321 222222 2
Q ss_pred CCCeEEEEEecCCCEEEEEeCCc---cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 461 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 461 ~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
........|||||++|+..+.++ .|++||+.++........ +......|+|||..|+....
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~------------~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT------------TRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC------------CCccCceECCCCCEEEEEEe
Confidence 23344678999999998877654 699999987743221111 11134567777776665444
No 225
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=134.38 Aligned_cols=251 Identities=19% Similarity=0.246 Sum_probs=184.2
Q ss_pred cccccCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 196 IQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 196 l~~H~~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..||...|....|-|. .+.+++++.||.+++=.+.....
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~--------------------------------------- 221 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY--------------------------------------- 221 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc---------------------------------------
Confidence 4578888988889884 46899999999999866543111
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe----cCCC---cEEEEEEeeCCCCEEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCVQFNPIDDNYFI 344 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~---~v~~l~~~p~~~~~l~ 344 (645)
......+..|.++|.-++.-|+. .|++++.|+.+.-.|++.+.+...+ .+.. ....++.+|.+.+.++
T Consensus 222 ---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 222 ---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 11234556799999999998875 7999999999999999887665444 2333 5778999997778999
Q ss_pred EEeCCCcEEEEeCCCCcEE-------Ee------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--------
Q 006424 345 SGSIDGKVRIWGVCEKRVV-------DW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-------- 403 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~-------~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~-------- 403 (645)
+++.|..+++||.+.-... .+ ....-.|+++.|+.++.-++++..|-.|+++.-.-+..
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 9999999999998752211 11 12344699999999998888999999999995432221
Q ss_pred --eeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424 404 --KLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 404 --~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
......+.++.. ...|.++-|- |. ..++++|+..|.|.||+-.. .++.+.+ ....|+|+.-+|--..||+
T Consensus 379 ~~~~~k~vYKGHrN--~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K~t~eii~~Meg--Dr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 379 REQYVKRVYKGHRN--SRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDKKTGEIIRFMEG--DRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred hhhccchhhccccc--ccccceeeeccCc-cceEEecCccceEEEEecchhHHHHHhhc--ccceEeccCCCCCCchhhc
Confidence 111111233322 2347777765 44 47999999999999999653 3444444 3448999999999999999
Q ss_pred EeCCccEEEEeCCCC
Q 006424 479 IGDDCRVYVWNYDEL 493 (645)
Q Consensus 479 ~s~dg~I~iwd~~~~ 493 (645)
+|-|.-|+||--.+.
T Consensus 454 SGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTA 468 (559)
T ss_pred cCCccceeeecCCcc
Confidence 999999999987444
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=3.9e-12 Score=137.50 Aligned_cols=181 Identities=12% Similarity=0.208 Sum_probs=129.4
Q ss_pred EecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--------EEEeeccCCCeEEEEEccCCCE
Q 006424 313 WQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIPDGKG 383 (645)
Q Consensus 313 wd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~v~~l~~sp~g~~ 383 (645)
|+.+ |..+..+ .|...+..++.++.++.+|++||.||+|++||.+.-. ..++......+.++...+.+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6665 4555444 6888898999988566999999999999999987521 2234446778999999999999
Q ss_pred EEEEecCCeEEEEEecCCceeeeEEee-ccccccCCCCeEE-EEEcCCCCc-EEEEEECCCeEEEEECCcc--eeeEeec
Q 006424 384 FIVGSITGTCHFYKASGNDLKLEKVDF-HDRKKTSGNKITG-IQFSRDESQ-RIMITSEDSKLRILDGVDV--IHKFKGL 458 (645)
Q Consensus 384 l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~i~~-i~~s~~g~~-~l~~~s~dg~I~iwd~~~~--~~~~~~~ 458 (645)
+|+++.||.|++.++............ ........+.+.+ -+|...... .++.+..-+.|..||.+.. ....+..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998763222111110 0001111233333 344433223 7888888899999998743 2333444
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
...+.|++++.+|.+.++++|+..|.+.+||++-+.
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 467899999999999999999999999999998663
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=7.9e-12 Score=132.41 Aligned_cols=219 Identities=13% Similarity=0.137 Sum_probs=148.6
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
+.+..|.+.+.+.+|+|||+.|+..+. +..|.+||+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------------------------------------- 237 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------------------------------------- 237 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-------------------------------------
Confidence 456678889999999999999888764 4679999997632
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCc--EEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...+..+.+.+...+|+|+| .| ++.+.++. |.+||+.++.......+........|+| +++.++..
T Consensus 238 ---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~ 307 (435)
T PRK05137 238 ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFE 307 (435)
T ss_pred ---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEE
Confidence 12334456667788999998 44 46666665 7777988887665555666677889999 89888777
Q ss_pred eC-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+. +| .|+++|+.++....+......+....|+|+|+.++....+ ..|.+||+.+..... + .. ...
T Consensus 308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--l--t~-----~~~ 378 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--L--TS-----GFL 378 (435)
T ss_pred ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--c--cC-----CCC
Confidence 64 33 6888898888777666556667788999999999887653 357788875543221 1 11 123
Q ss_pred eEEEEEcCCCCcEEEE-EECC-----CeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 421 ITGIQFSRDESQRIMI-TSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~-~s~d-----g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
+....|+||| +.|+. +... ..++++|+...... ... ..+.+...+|+|
T Consensus 379 ~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 379 VEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCccCcccCC
Confidence 5678999998 45544 4333 25777776532221 111 233455666665
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=133.98 Aligned_cols=226 Identities=12% Similarity=0.137 Sum_probs=177.1
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 367 (645)
.-..+.|+.+| .++.|+..|.|-.+|..+++....+.....|..+.|.. +.+++|++- ...++|||-.+-++..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~GtElHClk- 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNNGTELHCLK- 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhhh-hceEEEecCCCcEEeehh-
Confidence 34567888887 89999999999999999999999999888999999998 777877765 678999997666655544
Q ss_pred cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
....|..+.|-|..-+|++++..|.++.-|+..+..... + ....+.+..++-+|-+ ..+-+|...|+|.+|.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-~------~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-I------RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS 279 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHH-H------HccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence 345788999999998999999999999999998876432 1 1123677888889986 6888999999999999
Q ss_pred CCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424 448 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 526 (645)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~ 526 (645)
........+...|.++|.++++.++|+|+||+|.|..++|||+++-..+.............++..|. +|+++.+.-.
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~G~~v~ 357 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSYGDHVQ 357 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-eeeecCCeee
Confidence 76544444555599999999999999999999999999999999876444444444444445555444 4666554433
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.5e-11 Score=120.45 Aligned_cols=320 Identities=17% Similarity=0.200 Sum_probs=201.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..++..++|++|+++|.+. +..++|++..+.. .+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---------------------------------------------~~ 68 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---------------------------------------------VV 68 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---------------------------------------------EE
Confidence 3478889999998888765 4569999887631 11
Q ss_pred eeeccCccCeEEEEEcCCC-eEEE-----EeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEe
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLS-----CSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s-----~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s 347 (645)
.... ...++++.|+|-+ +|.+ ...+ -.+.+|+++++.....+. .... ++..|++ |+.+.+- -
T Consensus 69 lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~-dEsl~ar-l 143 (566)
T KOG2315|consen 69 LCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI-DESLAAR-L 143 (566)
T ss_pred EEec--cceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc-chhhhhh-h
Confidence 1111 1267788888866 4443 1222 347799999865555553 2222 6889998 6554332 2
Q ss_pred CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC--EEEE-----EecCCeEEEEEecCCc--eeeeEEeeccccccCC
Q 006424 348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK--GFIV-----GSITGTCHFYKASGND--LKLEKVDFHDRKKTSG 418 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~~-----g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~ 418 (645)
..+.+++|++.+.+.....-+...++.+.++|.+. .+|+ ++.-+.+++|...... .....-.+- .
T Consensus 144 v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF------k 217 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF------K 217 (566)
T ss_pred hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc------c
Confidence 35779999998866666556678899999999643 4443 3445689999876221 111111111 1
Q ss_pred CCeEEEEEcCCCCcEEEEEECC-----------CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE--eCCccE
Q 006424 419 NKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRV 485 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~--s~dg~I 485 (645)
..-..+.|++.|..+|+.++.| .+++++++......... ...++|.++.|+|+++-++++ -.-.++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 2234578888876666655443 36777777633344443 258899999999999776654 356789
Q ss_pred EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcccc
Q 006424 486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 565 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs 565 (645)
.|||++.. .+.-.+.|+...+-|+|.|.+++.++-+.+
T Consensus 297 tifnlr~~-------------~v~df~egpRN~~~fnp~g~ii~lAGFGNL----------------------------- 334 (566)
T KOG2315|consen 297 TIFNLRGK-------------PVFDFPEGPRNTAFFNPHGNIILLAGFGNL----------------------------- 334 (566)
T ss_pred EEEcCCCC-------------EeEeCCCCCccceEECCCCCEEEEeecCCC-----------------------------
Confidence 99998754 112235677778888888888776665544
Q ss_pred CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecC------CCeEeEEEec
Q 006424 566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGC------DGMIKTFHNY 639 (645)
Q Consensus 566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~------Dg~Iriw~~~ 639 (645)
.|.|.+||..+.+ +.............++| ||++|+||.. |+-|+||+.+
T Consensus 335 ------------~G~mEvwDv~n~K-----------~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 335 ------------PGDMEVWDVPNRK-----------LIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ------------CCceEEEeccchh-----------hccccccCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEec
Confidence 3456677766651 11111111111123334 7888877764 6889999999
Q ss_pred Ccccc
Q 006424 640 GLPIR 644 (645)
Q Consensus 640 g~~~~ 644 (645)
|-+++
T Consensus 391 G~~l~ 395 (566)
T KOG2315|consen 391 GSLLH 395 (566)
T ss_pred Cceee
Confidence 98775
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=8.9e-12 Score=115.58 Aligned_cols=113 Identities=19% Similarity=0.428 Sum_probs=91.4
Q ss_pred CccCeEEEEEcCCC-eE--EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC
Q 006424 286 HKGDVLDLAWSNSN-YL--LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 359 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l--~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~ 359 (645)
..++|.+++|+|++ .+ ++|..++.|.+||++ ++.+..+. ...+..+.|+| +|+++++++.+ |.|.+||.++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999987 54 345567899999997 66666665 45678999999 99999998754 6699999998
Q ss_pred CcEEEeeccCCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCc
Q 006424 360 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND 402 (645)
Q Consensus 360 ~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~ 402 (645)
.+.+....+.. ++.++|+|+|++++++.. |+.++||+..+..
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 88877666654 789999999999999874 6888999987654
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.2e-11 Score=130.84 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=145.4
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++..
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------------------------------------ 240 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------------------------------------ 240 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------------------------------------
Confidence 4466677889999999999999988743 4699999876321
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+..+.+...+..|+|+| .+ ++.+.+| .|++||+.+++......+.......+|+| +++.|+.+
T Consensus 241 ----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~ 309 (433)
T PRK04922 241 ----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFT 309 (433)
T ss_pred ----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence 2222333445578999998 44 4556665 59999999887655545555567789999 89888777
Q ss_pred eC-CCc--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~-dg~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+. +|. |+++|+.+++...+..........+|+|+|++++..+.++ .|.+||+.+..... +. .. ..
T Consensus 310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~--Lt-~~------~~ 380 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT--LT-PG------SL 380 (433)
T ss_pred ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE--CC-CC------CC
Confidence 64 444 7777887777665544444556789999999998876543 68999987765431 11 11 12
Q ss_pred eEEEEEcCCCCcEEEEEEC-C--CeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 421 ITGIQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~-d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
.....|+|+| ++++..+. . +.|.+++..... ......+.+.+...+|+|
T Consensus 381 ~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 DESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence 3456899998 55554444 2 457777765322 111222345566677766
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-11 Score=115.11 Aligned_cols=264 Identities=17% Similarity=0.296 Sum_probs=170.1
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..+-|.++.|...|.+||||..+|.|.++.-...... ...+...-++ ...+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------------ey~~~t~fqs----------hepEFD 76 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------------EYNFQTEFQS----------HEPEFD 76 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------------ceeeeeeeec----------cCcccc
Confidence 3456899999999999999999999999975542110 0000000000 000001
Q ss_pred CceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCe-----------------------------------E
Q 006424 279 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C 320 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~-----------------------------------~ 320 (645)
-+..+. -...|..+.|.+++ .++..+.|.+|++|.+.... +
T Consensus 77 YLkSle-ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p 155 (433)
T KOG1354|consen 77 YLKSLE-IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP 155 (433)
T ss_pred hhhhhh-hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence 111111 34578889998763 67788899999999874321 1
Q ss_pred EEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-Cc---EEEee-----ccCCCeEEEEEcc-CCCEEEEEe
Q 006424 321 LNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR---VVDWA-----DVRDVISAICYIP-DGKGFIVGS 388 (645)
Q Consensus 321 ~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~---~~~~~-----~~~~~v~~l~~sp-~g~~l~~g~ 388 (645)
.+.+ .|.-.|+++.++. |...++++. |=.|.+|++.- .+ ++-+. ....-|++..|+| ..+.++-.+
T Consensus 156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 1112 2777899999998 787787764 78899999863 22 22222 2335688999999 456888889
Q ss_pred cCCeEEEEEecCCceeeeE---Eeeccc------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---cceeeEe
Q 006424 389 ITGTCHFYKASGNDLKLEK---VDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK 456 (645)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~---~~~~~~------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---~~~~~~~ 456 (645)
..|+|++-|++...+--.. +..... ....-..|..+.|+++| +++++-.. -+|++||+. .+..++.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcceEEe
Confidence 9999999999843321110 000000 00112568889999998 67765433 689999975 3455554
Q ss_pred ecCC----------CCC---eEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 457 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 457 ~~~~----------~~~---i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+.. ... -..++|+-++.+++||+.....++++...+.
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 4321 112 2457899999999999999999999977663
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.1e-11 Score=111.99 Aligned_cols=149 Identities=14% Similarity=0.289 Sum_probs=102.6
Q ss_pred EEEEEeeCCCCEEEEEeC----------CCcEEEEeC--CCCcEEEe-eccCCCeEEEEEccCCCEEEEE--ecCCeEEE
Q 006424 331 TCVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHF 395 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~----------dg~i~vwd~--~~~~~~~~-~~~~~~v~~l~~sp~g~~l~~g--~~dg~i~i 395 (645)
..+.|+| +|++|++-.. -+...+|.+ .......+ ....++|.+++|+|+|+.|++. ..++.+.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567888 7766554332 123445544 33333333 2234569999999999987664 45779999
Q ss_pred EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424 396 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 472 (645)
Q Consensus 396 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~ 472 (645)
||++.... ..+. ...+..+.|+|+| +++++++.+ |.|.+||.++....... ....++.++|+||
T Consensus 88 yd~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd 154 (194)
T PF08662_consen 88 YDVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD 154 (194)
T ss_pred EcCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence 99972221 1122 2567889999998 788877643 67999999865554443 3345789999999
Q ss_pred CCEEEEEeC------CccEEEEeCCCC
Q 006424 473 GKHIISIGD------DCRVYVWNYDEL 493 (645)
Q Consensus 473 ~~~l~t~s~------dg~I~iwd~~~~ 493 (645)
|++|++++. |..++||++...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999874 788999999754
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.9e-11 Score=115.85 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=160.8
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
....+++|..++.. || .|++|-.+|.+.+|..+.+...
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h---------------------------------------- 138 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH---------------------------------------- 138 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence 44566777777765 33 7888899999999999864321
Q ss_pred cCCCceeeccCccCeEEEEEcCC--CeEEEEeCC--CcEEEEecCCCeEEEEe----------cCCCcEEEEEEeeCC--
Q 006424 276 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMD--KTVRMWQVGCNQCLNVF----------DHHNYVTCVQFNPID-- 339 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~d--g~I~iwd~~~~~~~~~~----------~~~~~v~~l~~~p~~-- 339 (645)
..++..+..+ ..+..+.-++. +.+++|+.. ..+.+||++..+.+..- ..+-+++.+.|-+ .
T Consensus 139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~ 215 (412)
T KOG3881|consen 139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP 215 (412)
T ss_pred -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence 1223333323 33444544543 367779998 88999999887555432 1344678899988 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 340 DNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
...|++++.-+.+++||.+.++ +..+.-...+++++...|+|+.+++|..-|.+..||++........+ ...
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------kg~ 289 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------KGI 289 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc------CCc
Confidence 6789999999999999998754 34566668899999999999999999999999999999887643322 223
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
.+.|+++..+|.+ .++++++-|..|||+|+.+........ -...++++-+.+
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 4789999999997 799999999999999987632222221 233455555544
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=2.1e-10 Score=117.30 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=161.4
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRI 354 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~v 354 (645)
.+.+..+......-..+.|+||+ +++.++.||.|.++|+.+++.+..+.......++++++ ++++++++. ..+.+.+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeE
Confidence 34455665443333457789987 78888999999999999999999998888889999999 999888765 5899999
Q ss_pred EeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 355 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 355 wd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+|.++.+.+.... ....+.++..+|....+++.-. .+.|-+.|........... ... ........
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~-----g~~~~D~~ 178 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKV-----GRFPHDGG 178 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE-------TTEEEEE
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecc-----cccccccc
Confidence 9999988766332 2346778888888886666655 4788888876653322111 111 24567889
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcceeeEee----cCCCCCeEEEEEecCC-CEEEEEeC---------CccEEEEeCC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTG-KHIISIGD---------DCRVYVWNYD 491 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~i~~v~~sp~~-~~l~t~s~---------dg~I~iwd~~ 491 (645)
|+|++..++++...++.|-++|..+....... ..|..++..+ .+|.. ...++++. ...+.+||..
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhh
Confidence 99998445555666789999998754433322 2233344443 23432 22222221 1223333333
Q ss_pred CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc---CCCCccccCccccccccC--CccC-CCCccccCcccc
Q 006424 492 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL---CSSSLRDCSQKWDNLETA--PWIR-DSERFSLGSWFS 565 (645)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~---~~~~~~~~~~~w~~~~~~--~~~~-~~~~~~~~~~fs 565 (645)
+.+. .. ...-.|.-+.+..+|++.++|.- ..+ ...+.+.+..... ..+. .....+..+.|+
T Consensus 258 ~wkv---------v~--~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 258 AWKV---------VK--TIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp BTSE---------EE--EEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred cCeE---------EE--EEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 3221 11 11112222566667777777744 222 2233333332211 1111 111237788999
Q ss_pred CCCCCCcCCCCCCC-cCCCCCCccC
Q 006424 566 NDGPCRGSATWPAE-KLPLWDVTID 589 (645)
Q Consensus 566 ~dg~~l~s~s~~d~-~i~iWd~~~~ 589 (645)
+||+.+-.+.|..+ .|.++|..+.
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCCEEEEEEecCCCEEEEEECCCc
Confidence 99996655666444 7999998887
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.4e-11 Score=122.30 Aligned_cols=249 Identities=17% Similarity=0.261 Sum_probs=176.1
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.....|+.|+.+..|+|+|+.||.+++-.+.+... +......+... .-..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-------d~~~~glaa~s-----------------------nLsm 63 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-------DLNKSGLAAAS-----------------------NLSM 63 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC-------ccccccccccc-----------------------ccch
Confidence 34578999999999999999999999998876321 11000000000 1233
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
-+++.||.+.|.-+.|+.+. .|-|...+|.|.+|-+-.|.-.... ...+.|.+++|+. +|..+...-.||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence 47889999999999999765 7889999999999998777654433 3567899999999 99999999999999988
Q ss_pred eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEc----
Q 006424 356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFS---- 427 (645)
Q Consensus 356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s---- 427 (645)
.+.+.++....-.......+.|++|.+.++.+-..|.+++||..+.-.... .+...+.....+..|..+.|.
T Consensus 143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 887776654322233355788999999999999999999999875432111 122222222223446666664
Q ss_pred ----CCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 428 ----RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 428 ----~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
|+. ..++++...|.+.|..-.+ ....... ....+.++.|+++|..||.+|.|
T Consensus 223 ~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 223 QPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 343 5789999999998876432 2222222 23578899999999999999865
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=3.2e-10 Score=120.13 Aligned_cols=200 Identities=19% Similarity=0.261 Sum_probs=136.1
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCC--cE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV 352 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg--~i 352 (645)
.+.+..+...+...+|+|++ +|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence 34455566778899999998 66665543 479999999887655555666677899999 8876654 44444 59
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
++||+.++....+..+........|+|+|+.|+..+. ++ .|+++|+.+.... .+... ........|+|+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd 332 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD 332 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence 9999998887777666655667899999998877654 33 5777777655432 22222 245667899999
Q ss_pred CCcEEEEEECCC---eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc---cEEEEeCC
Q 006424 430 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD 491 (645)
Q Consensus 430 g~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~ 491 (645)
| .+++.++.++ .|.+||+......... .........|+|+|++|+..+.++ .+++.+..
T Consensus 333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 8 6777777665 7888887643222211 122334568999999988877654 45555544
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=3.2e-10 Score=115.90 Aligned_cols=322 Identities=14% Similarity=0.080 Sum_probs=179.5
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEecCCCcE-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc
Q 006424 301 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 379 (645)
Q Consensus 301 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp 379 (645)
+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+.+..........++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 456667899999999999999999754444 4567899 99999999999999999999999988777778889999999
Q ss_pred CCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEe
Q 006424 380 DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK 456 (645)
Q Consensus 380 ~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~ 456 (645)
||+++++++ ..+.+.++|.++.+.... +..... ......++..+..+|....++++.-+.+.|.+.|...... ...
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 999999875 689999999988765432 222211 1113457788888888644455555558999988664311 112
Q ss_pred ecCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcc---cCCcce-eeeeecCC-cEEEEecCCCCccc-c
Q 006424 457 GLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQ---KNSVRS-CEHFFSEG-VSVAVQWPGIGTEQ-K 529 (645)
Q Consensus 457 ~~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~---~~~~~~-~~~~~~~g-~~~~v~~s~~~~~l-~ 529 (645)
............|+|+++|++.+ ..+..|-++|..+.+...... ...... ....|+.. .+.+.. ..+... .
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~~~~ 244 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYFAIP 244 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSSEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccceecc
Confidence 22234567789999999988765 456789999988775322211 111111 11234432 333332 222222 2
Q ss_pred ccCCCCcc-ccCccccccccCCccCCCCccccCccccCCCCCCcCC---CCCCCcCCCCCCccCCCCCcCChhhhHhhhh
Q 006424 530 SLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA---TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ 605 (645)
Q Consensus 530 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~---s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~ 605 (645)
..+.+... .....|......+. .+.. ..+.-+||++++... ......|.++|..+.+.. . . ...
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~---~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~-~------~-i~~ 312 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPT---QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV-K------T-ITP 312 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE-E--------HHH
T ss_pred cccCCccccchhhcCeEEEEEEC---CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee-E------E-Eec
Confidence 33443332 22344544433322 2222 455668999977554 332568999998886200 0 0 001
Q ss_pred hccCCCCCccCCCCcce-EEEEecCCC-eEeEEEec
Q 006424 606 CLNNVDDVRAISATWGL-VIVTAGCDG-MIKTFHNY 639 (645)
Q Consensus 606 ~~~~~~~~~~~~~~d~~-~ivt~s~Dg-~Iriw~~~ 639 (645)
.......-..|+. ||. +.+|.-.++ .|.+||..
T Consensus 313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETT
T ss_pred cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECC
Confidence 1111111134555 565 445555555 89999854
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.36 E-value=1.9e-11 Score=121.40 Aligned_cols=163 Identities=20% Similarity=0.405 Sum_probs=115.7
Q ss_pred ccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.+..|+|+.|-|.+. .++.+-.+|.+.+||...... ...+. .......+...+.... .....
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~---~t~p~--~~~~k~~~~f~i~t~k------------sk~~r 280 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG---ATAPS--YQALKDGDQFAILTSK------------SKKTR 280 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeecccccc---CCCCc--ccccCCCCeeEEeeee------------ccccC
Confidence 347899999999654 566667899999998742100 00000 0000000000000000 00012
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.++..+.--.+.|...+|+||| +|++.+.||.++|+|..+.+.+..+. --+...|++|+| |++++++|++|..|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence 4445555456689999999998 99999999999999999887776664 445789999999 99999999999999999
Q ss_pred eCCCCcEEEe-eccCCCeEEEEEcc
Q 006424 356 GVCEKRVVDW-ADVRDVISAICYIP 379 (645)
Q Consensus 356 d~~~~~~~~~-~~~~~~v~~l~~sp 379 (645)
.+..++++.. .+|+++|+.++|.|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999998874 78999999999998
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.6e-10 Score=119.56 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=127.3
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeC-CC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCCc--EE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR 353 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg~--i~ 353 (645)
+.+..+...+.+..|+|+| .|+..+. ++ .|.+||+.+++...............|+| +++.|+. .+.++. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 3445567788899999998 6665543 33 58888998877544333334445789999 8887664 555664 88
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
++|+.+++...+..+.......+|+|||+.++..+. +| .|+++|+.+... ..+.... .......|+|+|
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g------~~~~~~~~SpDG 361 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEG------EQNLGGSITPDG 361 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCC------CCCcCeeECCCC
Confidence 889998888777766666788999999998877654 44 455566655543 2222222 223456899998
Q ss_pred CcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-c--cEEEEeCCCC
Q 006424 431 SQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDEL 493 (645)
Q Consensus 431 ~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g--~I~iwd~~~~ 493 (645)
..++++...++ .|.++|+......... .........|+|||++|+..+.+ | .+++++.+..
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 44444444445 4555676543222111 11122345799999988776643 3 3677776543
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=9.1e-11 Score=117.51 Aligned_cols=207 Identities=9% Similarity=0.087 Sum_probs=146.8
Q ss_pred cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe--------------------------------------
Q 006424 285 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-------------------------------------- 324 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~-------------------------------------- 324 (645)
.|...-+.+..+||| .+++|.+.-.|++||+..-.....-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 477888999999998 5778889999999998643211100
Q ss_pred --cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424 325 --DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 325 --~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~ 401 (645)
..+..-..++++.....++ +++....|+-+++..|+.+.... ..+.++++..++-..+|++|+.+|.|.+||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0011123344443233444 44445678889999999877444 4488999999999999999999999999999876
Q ss_pred ceeeeEEeeccccccCC-----CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEEEEecC--C
Q 006424 402 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTT--G 473 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~-----~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v~~sp~--~ 473 (645)
... ..+........+. ..|+++.|+.+| -.+++|+.+|.|.|||++.....+ ..+....+|..+.|-+. +
T Consensus 208 srv-~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 208 SRV-GTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhh-eeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 543 2222222222222 349999999997 899999999999999998544433 34556778999999765 4
Q ss_pred CEEEEEeCCccEEEEeCCCCCc
Q 006424 474 KHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
+.+++. +...++|||-.+++.
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred ceEEec-chHHhhhcccccCCc
Confidence 556554 567899999988853
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=1.6e-10 Score=122.35 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=135.6
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
+.+..+...+.+..|+|||++|+.++.+ ..|++||+.++.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~------------------------------------- 225 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ------------------------------------- 225 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-------------------------------------
Confidence 4455677789999999999999987654 479999987632
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...+..+.+.+.+++|+|++ .|+ +.+.++ .|++||+.++.......+........|+| +++.|+.+
T Consensus 226 ---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~ 295 (417)
T TIGR02800 226 ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT 295 (417)
T ss_pred ---------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence 12223344556678999997 454 555444 58889998876655545555556778999 88887766
Q ss_pred eCC-C--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~d-g--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.. + .|+++|+.+++...+..+........|+|+|++++.++.++ .|.+||+.+..... + ... ..
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l--~~~-----~~ 366 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--L--TDT-----GL 366 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--c--cCC-----CC
Confidence 543 3 58888988887776666666778899999999999988776 78888887644321 1 111 12
Q ss_pred eEEEEEcCCCCcEEEEEECCC---eEEEEEC
Q 006424 421 ITGIQFSRDESQRIMITSEDS---KLRILDG 448 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg---~I~iwd~ 448 (645)
.....|+|+| ..|+..+.++ .+++.+.
T Consensus 367 ~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 367 DESPSFAPNG-RMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCCceECCCC-CEEEEEEeCCCcEEEEEEEC
Confidence 3446899998 5555554443 3455553
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.2e-10 Score=119.46 Aligned_cols=206 Identities=13% Similarity=0.165 Sum_probs=136.3
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCC
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG 350 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg 350 (645)
++...+.+..+...+....|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| +++.|+ +.+.+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence 344456666677889999999998 67665543 368999999887655444445566789999 888776 444454
Q ss_pred --cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 351 --KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 351 --~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
.|++||+.++....+..+........|+|||+.++..+. +| .|+++++.+.... .+.... .......
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~ 337 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPR 337 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceE
Confidence 588889999888777666666778899999998876654 33 5666777655432 222221 2234578
Q ss_pred EcCCCCcEEEEEEC-CC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424 426 FSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 493 (645)
Q Consensus 426 ~s~~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~ 493 (645)
|+|+| ..++..+. ++ .|.++|+......... .........|+|||++++..+.+ ..|++++++..
T Consensus 338 ~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 338 LSADG-KTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ECCCC-CEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99998 55555543 33 5788887643222211 11222356899999999877653 35677777543
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.9e-08 Score=102.98 Aligned_cols=250 Identities=16% Similarity=0.174 Sum_probs=157.8
Q ss_pred CcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 201 GCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
..-..++++|++++|.++.. +|.|..|++......
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~----------------------------------------- 75 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT----------------------------------------- 75 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------------------------------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------------------------------
Confidence 34567889999999988876 568888887652000
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecCC-CeEEEE---ec-----------CCCcEEEEEEeeCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPID 339 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~-~~~~~~---~~-----------~~~~v~~l~~~p~~ 339 (645)
-..+............++++|++ +|+++. .+|.|.++++.. +..... +. ......++.|+| +
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-d 154 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-D 154 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-T
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-C
Confidence 01122222233445578888887 666665 489999999976 443322 21 234578999999 8
Q ss_pred CCEEEEEeC-CCcEEEEeCCCCc--EEE----eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeE---E
Q 006424 340 DNYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEK---V 408 (645)
Q Consensus 340 ~~~l~s~s~-dg~i~vwd~~~~~--~~~----~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~---~ 408 (645)
++++++... ...|.+|++.... +.. ........+.+.|+|+++++++..+ ++.|.+|++......... +
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 888877654 3579999987654 322 2345667899999999998877654 678999999832222221 1
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEee-cCCCCCeEEEEEecCCCEEEEEe-CCc
Q 006424 409 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKG-LPKSGSQMSASFTTTGKHIISIG-DDC 483 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s-~dg 483 (645)
...............+.++|+|..++++....+.|.+|++.. ....... .........+.++|+|++|+++. .++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 111111111236788999999844444445678999999731 1222221 21344579999999999999887 567
Q ss_pred cEEEEeCCC
Q 006424 484 RVYVWNYDE 492 (645)
Q Consensus 484 ~I~iwd~~~ 492 (645)
.|.+|+++.
T Consensus 315 ~v~vf~~d~ 323 (345)
T PF10282_consen 315 TVSVFDIDP 323 (345)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEEeC
Confidence 999998753
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.4e-10 Score=118.24 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=134.9
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
.+..+...+.+..|||||++|+..+. ++ .|.+||+.++..
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~------------------------------------- 254 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR------------------------------------- 254 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------------------
Confidence 34456678889999999998887654 33 477888766321
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCc--EEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
..+....+......|+|+| .|+ +.+.+|. |.++|+.+++......+.......+|+| +++.++..+
T Consensus 255 ---------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s 324 (448)
T PRK04792 255 ---------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTS 324 (448)
T ss_pred ---------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEE
Confidence 1111112233467899997 454 5566665 7778888877655545555667889999 888776655
Q ss_pred C-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 348 I-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 348 ~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
. ++ .|+++|+.+++...+..........+|+|||++++..+. ++ .|.++|+.+..... + ... ...
T Consensus 325 ~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--l--t~~-----~~d 395 (448)
T PRK04792 325 ERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--L--TST-----RLD 395 (448)
T ss_pred CCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--c--cCC-----CCC
Confidence 4 33 477778888776655433333456789999998887655 34 45556766654321 1 111 111
Q ss_pred EEEEEcCCCCcEEEEEECCCe--EEEEECCcc-eeeEeecCCCCCeEEEEEec
Q 006424 422 TGIQFSRDESQRIMITSEDSK--LRILDGVDV-IHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~--I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp 471 (645)
....|+|+|..++++...++. +++++.... ...+. .+.+.+...+|+|
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence 234799998555555555543 666675422 22222 2344566677776
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=3.6e-09 Score=99.11 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=119.5
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC-CCeEEEEec---CCCcEEEEEEeeCCC-CEEEE-EeCCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDD-NYFIS-GSIDG 350 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~---~~~~v~~l~~~p~~~-~~l~s-~s~dg 350 (645)
.+++.++. ...+|.++.+.++..++. ..+.|+||... ..+.+..+. .+..+.+ ..|..+ .+||. |-.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccc
Confidence 34455554 678899999987653332 35789999886 445555553 3344433 344233 33443 33458
Q ss_pred cEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCe-EEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 351 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 351 ~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
.|.|-|+...+. ..+..|...|.|++.+-+|..+|+++..|+ |+|||..++....+...-. ....|.+++|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~iy~iaF 234 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADIYCIAF 234 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheEEEEEe
Confidence 999999987655 778899999999999999999999999996 7899999988765522222 2378999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCc
Q 006424 427 SRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
+|+. .+|+++|..|++.|+.++.
T Consensus 235 Sp~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCc-cEEEEEcCCCeEEEEEeec
Confidence 9997 8999999999999998763
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=8.3e-10 Score=117.20 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=138.8
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
+.+..|...+....|||||+.|+..+.+ ..|.+||+.++..
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------------------------ 235 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------------------------ 235 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------------------------
Confidence 4455677889999999999999877643 3588888876321
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+....+.+....|+|+| .|+ +.+.+| .|.+||+.+++......+........|+| +++.++..
T Consensus 236 ----------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~ 304 (430)
T PRK00178 236 ----------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT 304 (430)
T ss_pred ----------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence 1222223344568999997 554 555555 58888998887655445555566789999 88877666
Q ss_pred eC-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-C--eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+. ++ .|+++|+.+++...+...........|+|+|+.++..+.+ + .|.+||+.+..... +. .. ..
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt-~~------~~ 375 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT-DT------SL 375 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--cc-CC------CC
Confidence 54 33 5888888887765544333344567899999999887653 3 57788887765322 11 11 11
Q ss_pred eEEEEEcCCCCcEEEEEECCC--eEEEEECCccee-eEeecCCCCCeEEEEEec
Q 006424 421 ITGIQFSRDESQRIMITSEDS--KLRILDGVDVIH-KFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp 471 (645)
.....|+|+|..++++...++ .+.+++...... .+. .+.+.+...+|+|
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP--TAQGEVREPSWSP 427 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence 224589999854444444443 466666542222 222 2344556666765
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.7e-09 Score=107.23 Aligned_cols=263 Identities=14% Similarity=0.209 Sum_probs=164.1
Q ss_pred cEEEEEECCCCCEEEEE-----eCC-----CcEEEEEcCCCceeee-----------EecCCCCcccCCCCceEEecccC
Q 006424 202 CIWTLKFSPDGRYLASG-----GED-----GVVRIWHVTSVAASCK-----------SFTDDGGFGSNAKEGKIKFGKKK 260 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sg-----s~D-----g~I~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 260 (645)
.++++.|||-|.||.|= ..+ -.+.+|+++++..... .|+.+..+.+......+.|....
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 58899999999998773 122 3477999988322111 11122222222222222222111
Q ss_pred CCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC---eEEE-----EeCCCcEEEEecCCCeEEEEec----CCC
Q 006424 261 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHN 328 (645)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s-----~s~dg~I~iwd~~~~~~~~~~~----~~~ 328 (645)
......-.-|...|+.+.++|.+ .+++ .|.-..|+||.......-.... ...
T Consensus 155 ----------------~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 155 ----------------SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred ----------------CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 11111122357789999999863 3442 4556789999876322211111 122
Q ss_pred cEEEEEEeeCCCCEEEEEeC--C---------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEE--EecCCeEEE
Q 006424 329 YVTCVQFNPIDDNYFISGSI--D---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHF 395 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~--d---------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--g~~dg~i~i 395 (645)
.-..+.|++....+|+.++. | .+++++++.+..+..-....++|+++.|+|+|+.+++ |.+-..+.|
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 22356787733334444432 2 4688888886566555666899999999999987766 566789999
Q ss_pred EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424 396 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 472 (645)
Q Consensus 396 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~ 472 (645)
||++..-. ..+. .++-+++-|+|.| ++++.++.+ |.+-|||..+....... .-..-+-+.|+||
T Consensus 299 fnlr~~~v----~df~------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~Pd 365 (566)
T KOG2315|consen 299 FNLRGKPV----FDFP------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPD 365 (566)
T ss_pred EcCCCCEe----EeCC------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCC
Confidence 99986543 1122 2667889999998 677777665 89999998763333222 2334466799999
Q ss_pred CCEEEEEeC------CccEEEEeCCCC
Q 006424 473 GKHIISIGD------DCRVYVWNYDEL 493 (645)
Q Consensus 473 ~~~l~t~s~------dg~I~iwd~~~~ 493 (645)
|++++|++. |+.++||++...
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999874 788999999765
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=107.89 Aligned_cols=319 Identities=16% Similarity=0.177 Sum_probs=201.5
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
-.-++..++|||.|.+|++....| |.+|.-....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~--------------------------------------------- 64 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA--------------------------------------------- 64 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh---------------------------------------------
Confidence 444788999999999999987776 8899866532
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCC---------------CcEEEEecCCCeEEEEecCC-Cc--EE-EEEEeeC
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFDHH-NY--VT-CVQFNPI 338 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---------------g~I~iwd~~~~~~~~~~~~~-~~--v~-~l~~~p~ 338 (645)
.+..+. ...|..+.|+|.+ +|.+=+.. ..+.+||+.+|..+..+... .+ .+ -+.|+-
T Consensus 65 ~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~- 141 (561)
T COG5354 65 KLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI- 141 (561)
T ss_pred heeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence 122222 2457777778776 66654332 35999999999999988522 22 34 678887
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEE--eecc-CCCeEEEEEccCCC--EEEE-----EecCCeEEEEEecCCceeeeEE
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RDVISAICYIPDGK--GFIV-----GSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~-~~~v~~l~~sp~g~--~l~~-----g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
+++++|-. ....++++++ ++.... +... ...+....|+|.|+ .|+. ....+.+++|.+..+......-
T Consensus 142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~ 219 (561)
T COG5354 142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN 219 (561)
T ss_pred cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence 77776554 3457999997 443332 2222 35688888999643 3443 4567889999988554432221
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEE----------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424 409 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
-+. ..-..+.|.+.|..+++-.- ....++++++.+....... .-.++|...+|.|.++.+++
T Consensus 220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence 111 12245778888743332221 1256788887643222221 35789999999999888776
Q ss_pred Ee--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC
Q 006424 479 IG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE 556 (645)
Q Consensus 479 ~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 556 (645)
.+ .+..+.++|++.. .....|++.-....|+|.+.++...+-+.+...+.+|+............
T Consensus 292 i~g~~pa~~s~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~ 358 (561)
T COG5354 292 ISGYMPASVSVFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN 358 (561)
T ss_pred Eecccccceeecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence 55 6788999998765 22233455555666777777777766666666677777655444331222
Q ss_pred cc-ccCccccCCCCCCcCCC-----CCCCcCCCCCCccC
Q 006424 557 RF-SLGSWFSNDGPCRGSAT-----WPAEKLPLWDVTID 589 (645)
Q Consensus 557 ~~-~~~~~fs~dg~~l~s~s-----~~d~~i~iWd~~~~ 589 (645)
.. ..-..|||||+++-.+. ..|..|.+|++...
T Consensus 359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 22 22236899999554432 33568999998765
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=1.4e-09 Score=111.29 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=169.3
Q ss_pred EEEEeCC----CcEEEEec--CCCeEE--EEecCCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEeCCCC--cEEE--
Q 006424 301 LLSCSMD----KTVRMWQV--GCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVD-- 364 (645)
Q Consensus 301 l~s~s~d----g~I~iwd~--~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~~~~--~~~~-- 364 (645)
++.|+.. +.|.+|++ ++++.. ...........++++| ++++|+++.. ++.|..|++... .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 68888888 455443 2333455677889999 8899988877 468999987653 4332
Q ss_pred -eeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEe---ecc----ccccCCCCeEEEEEcCCCCcEEE
Q 006424 365 -WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVD---FHD----RKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 365 -~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~---~~~----~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
..........++++|++++++++. .+|.+.++++........... ..+ ..+.......++.++|+|..+++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222456678899999999999887 589999999987533333211 111 11223456789999999844444
Q ss_pred EEECCCeEEEEECCcce------eeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccCCccee-
Q 006424 436 ITSEDSKLRILDGVDVI------HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSC- 507 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~------~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~- 507 (645)
+.-....|.+|+..... ..+. .........+.|+|++++++... .++.|.++++............ ....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~-~~~~~ 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT-ISTLP 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EESCE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE-eeecc
Confidence 44455789999976322 1222 23456678999999999887765 4788999999832211100000 0000
Q ss_pred eeeecCCcEEEEecCCCCccccccCCCCccccCccccc------cccCCccCCCCccccCccccCCCCCCcCCCCCCCcC
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL 581 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i 581 (645)
..+........+..+|||.+|+......- .+.+++. +.........+..-++++|+|||++++.+...++.|
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~--sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSN--SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTT--EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCC--EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence 01111123557777888888775544321 1111111 111112222334467889999999998887768889
Q ss_pred CCCCCc
Q 006424 582 PLWDVT 587 (645)
Q Consensus 582 ~iWd~~ 587 (645)
.+|++.
T Consensus 317 ~vf~~d 322 (345)
T PF10282_consen 317 SVFDID 322 (345)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988764
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-10 Score=108.63 Aligned_cols=235 Identities=15% Similarity=0.318 Sum_probs=151.2
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeE--ecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 201 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKS--FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
..|+.+.|.++++ .++..+.|++|++|.+......... ....+ .......+. .++... ....++
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~---~~~~~~~lr--------~p~~~~-~~~~ve 152 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG---PPGTITSLR--------LPVEGR-HDLEVE 152 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC---CCCccceee--------ceeecc-ccceee
Confidence 4588899988765 6677788999999998763322100 00000 000000000 000000 001112
Q ss_pred CCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEe--c------CCCcEEEEEEeeCCCCEEEEE
Q 006424 277 ESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 277 ~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~--~------~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+.+.+. +|+..|++++++.|+..+..+.|-.|.+|+++- .+..... . ...-|++..|+|...+.++..
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 23344443 799999999999888555556778999999863 2222221 1 334689999999888899999
Q ss_pred eCCCcEEEEeCCCCcEEE-----------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 347 SIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
+..|+|++-|++...+.- +.+.-..|..+.|+++|+++++-+. -+|++||+.....+.....
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence 999999999998543221 1122345888999999999987542 5899999977777777666
Q ss_pred eccccccC------CCC---eEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 410 FHDRKKTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 410 ~~~~~~~~------~~~---i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
++...... ... -..++|+.++ .++++|+..+.++++++.
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCC
Confidence 65432110 111 2357888887 799999999999999955
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1e-09 Score=117.81 Aligned_cols=184 Identities=13% Similarity=0.172 Sum_probs=147.6
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE-----EEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCCe
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVI 372 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~-----~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~v 372 (645)
..++.++.+..+.+||...+.......+...+. -+-+++ +.-++++|+.-+.|.+|+... .....+.+|.+.+
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 478888999999999998887777776554322 223345 566899999999999999864 3344689999999
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc
Q 006424 373 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV 451 (645)
Q Consensus 373 ~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~ 451 (645)
.++.++.||+++++.++|.++++|++.+.+... ..--.|..++..++|.|+ .+++++.|-+.++|+.. ..
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccce
Confidence 999999999999999999999999999877643 223345789999999987 89999999999999754 22
Q ss_pred eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...+..+ ....+..++.+++...++|++.||.+++|++...
T Consensus 250 l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 250 LEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 3344443 4567899999999999999999999999998653
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.1e-08 Score=107.38 Aligned_cols=208 Identities=11% Similarity=0.088 Sum_probs=126.8
Q ss_pred CCCceeeccCccCeEEEEEcCCC-e--EE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-C
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-D 349 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~--l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-d 349 (645)
+...+.+......+..-.|+||| . ++ +...+| .|.+.++.+++........+.....+|+| ||+.|+..+. +
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~ 252 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRY 252 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCC
Confidence 34444555555667778999996 3 32 343333 57778888877655555555566789999 9988776553 2
Q ss_pred C----cEEEEeCCC---CcEEEeecc-CCCeEEEEEccCCCEEEEEe-cCCeEEEEEec--CCceeeeEEeeccccccCC
Q 006424 350 G----KVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 350 g----~i~vwd~~~---~~~~~~~~~-~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~ 418 (645)
| .+..|++.. +....+... .......+|+|||+.|+..+ .+|...+|.+. ........+... .
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~------~ 326 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK------Y 326 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC------C
Confidence 2 344467664 333444333 23456789999999887765 46655555443 211111111111 2
Q ss_pred CCeEEEEEcCCCCcEEEEEEC-C--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC---CccEEEEeCCC
Q 006424 419 NKITGIQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDE 492 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~-d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---dg~I~iwd~~~ 492 (645)
..+....|+||| +.|+..+. + ..|.+||+......... .....+....|+|||++|+..+. ...|++||+.+
T Consensus 327 ~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 327 RNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 356678999998 55555443 3 47899997643322211 12335677899999998875443 35788889877
Q ss_pred C
Q 006424 493 L 493 (645)
Q Consensus 493 ~ 493 (645)
+
T Consensus 405 g 405 (428)
T PRK01029 405 K 405 (428)
T ss_pred C
Confidence 6
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=5.5e-09 Score=105.83 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=114.7
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEE
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI 375 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l 375 (645)
.++-|...|.|.+|++..|+....+. |.+.|.++.++. +-..|.+++.|+.+..|+...+.... +...+..+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 68888999999999999999888774 889999999987 77899999999999999999988766 55667789999
Q ss_pred EEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC-----CCcEEEEEECCCeEEEEECC
Q 006424 376 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 376 ~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~-----g~~~l~~~s~dg~I~iwd~~ 449 (645)
+++|||..+++++ +.|++||+++.+.... +. +|.++|.+++|-.+ |..+|.+...+..+.+|-..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~---ft----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVIT---FT----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEE---ec----CCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999998886 6899999998876432 33 34689999999876 53445555566777777543
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=8.6e-09 Score=102.41 Aligned_cols=324 Identities=14% Similarity=0.128 Sum_probs=197.1
Q ss_pred CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---------------
Q 006424 286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------------- 350 (645)
Q Consensus 286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--------------- 350 (645)
..-++..++|||.|.++....-..|.+|+-..+..+..+.|.. |..+.|+| .+++|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~-V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPD-VKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeecCC-ceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence 5567889999999955555555679999988877777777765 89999999 999999866433
Q ss_pred cEEEEeCCCCcEEEeecc-CCC--eE-EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 351 KVRIWGVCEKRVVDWADV-RDV--IS-AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~-~~~--v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
.+.+||..++.++..... ..+ .. -+.|+.+.+++|-. ....++++++ +...... .+.. .....|....|
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~--p~~~---lr~~gi~dFsi 181 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH--PFKN---LRPVGILDFSI 181 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC--chhh---ccccceeeEEe
Confidence 499999999998864332 222 23 57888888776654 4457899997 3332211 1111 11256888899
Q ss_pred cCCCC-cEEEE-----EECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEe-----------CCccEEE
Q 006424 427 SRDES-QRIMI-----TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIG-----------DDCRVYV 487 (645)
Q Consensus 427 s~~g~-~~l~~-----~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-----------~dg~I~i 487 (645)
+|.+. ..|+. .+.++.+++|.+... +..... ....-..+.|.+.|++|..-- ....++|
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 99731 22332 356788999987622 111111 122234678899998876421 1346778
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCC
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND 567 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~d 567 (645)
+++.....+... .-.+++...+|.|.+...+.+.+-.- ..+.+.+. .+.......+..-..+.|||.
T Consensus 260 ~~~~e~~i~V~~-----------~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~l-r~Nl~~~~Pe~~rNT~~fsp~ 326 (561)
T COG5354 260 LRITERSIPVEK-----------DLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDL-RGNLRFYFPEQKRNTIFFSPH 326 (561)
T ss_pred Eeecccccceec-----------cccccceeeeecccCCceeEEecccc-cceeeccc-ccceEEecCCcccccccccCc
Confidence 887744222221 22466778888888877765442100 00111111 111222233334456789999
Q ss_pred CCCCcCCCCCC--CcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEec------CCCeEeEEEec
Q 006424 568 GPCRGSATWPA--EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNY 639 (645)
Q Consensus 568 g~~l~s~s~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s------~Dg~Iriw~~~ 639 (645)
+++++.+..+. |.|.+|+....- +..............+++ |++++.++- -|..|+||+++
T Consensus 327 ~r~il~agF~nl~gni~i~~~~~rf----------~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDPAGRF----------KVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccEEEEecCCccccceEEeccCCce----------EEEEEeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEec
Confidence 99888766532 578889877651 001011111112223444 788876653 48899999999
Q ss_pred Ccccc
Q 006424 640 GLPIR 644 (645)
Q Consensus 640 g~~~~ 644 (645)
|.++.
T Consensus 396 g~~~f 400 (561)
T COG5354 396 GAKVF 400 (561)
T ss_pred Cchhh
Confidence 98864
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=3.8e-08 Score=111.68 Aligned_cols=283 Identities=12% Similarity=0.219 Sum_probs=172.1
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeE-ecCCC-----CcccCCCCceEEecccCCCcceeecCCCc
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FTDDG-----GFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
-.+.|.|++||||+..|+.++.+|++.+.+. +.+..... ..++. ....+++.....|-+..+..+.....+..
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 3468999999999999999999999988753 33322221 11111 11111111111111111111100000000
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeC------CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM------DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~------dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~ 344 (645)
. .......+. +...-..++|-.|| +++..+. -..++||+-+ |....+-+ ..+--.+++|.| .|+++|
T Consensus 198 ~--~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA 272 (928)
T PF04762_consen 198 V--PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIA 272 (928)
T ss_pred C--CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEE
Confidence 0 000112233 55567789999998 6665543 2579999976 65444333 333345789999 999999
Q ss_pred EEeC---CCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeecccccc
Q 006424 345 SGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT 416 (645)
Q Consensus 345 s~s~---dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~ 416 (645)
+... ...|.+|.-++-+--. +......|..+.|++++..||+...|. |.+|...+...-.+ .+.+..
T Consensus 273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~---- 347 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS---- 347 (928)
T ss_pred EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC----
Confidence 8765 3457777755533322 224466799999999999999987665 99999998776544 222222
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-----------------------ccee-eEe-----------ecCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV-----------------------DVIH-KFK-----------GLPKS 461 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-----------------------~~~~-~~~-----------~~~~~ 461 (645)
...+..+.|+|..+..|...+.+|.+..++.. +... .+. ...-.
T Consensus 348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~ 426 (928)
T PF04762_consen 348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP 426 (928)
T ss_pred -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence 23455599999877778877776766555411 0000 000 01135
Q ss_pred CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+|..++|++++..+++-..||.|.+|.....
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 68999999999988999999999999996554
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.1e-09 Score=109.39 Aligned_cols=206 Identities=10% Similarity=0.012 Sum_probs=123.2
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCE--E-EEEeCCC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCC
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSIDG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGK 382 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~--l-~s~s~dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~ 382 (645)
..|.+.|.+.+..............-.|+| +++. + ++...+| .|++.++.+++...+....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 357777776555544444555667789999 8764 2 2443343 58888999888777766666677889999999
Q ss_pred EEEEEec-CC----eEEEEEecCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCc--c-
Q 006424 383 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD--V- 451 (645)
Q Consensus 383 ~l~~g~~-dg----~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~--~- 451 (645)
.|+..+. +| .+..|++..... ....+. ... .......+|+|||..++++...+|...+| ++.. .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEA----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEee-cCC----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 8887653 23 334466554211 111111 110 12345679999984444445456655555 4421 1
Q ss_pred eeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccc
Q 006424 452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ 528 (645)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l 528 (645)
...+.. ....+....|||||++|+..+.+ ..|++||+.+++....... .+......|+|||..|
T Consensus 319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-----------~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-----------PENKESPSWAIDSLHL 385 (428)
T ss_pred eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-----------CCCccceEECCCCCEE
Confidence 222222 33466788999999999876643 4799999987743221111 1223456788888777
Q ss_pred cccC
Q 006424 529 KSLC 532 (645)
Q Consensus 529 ~~~~ 532 (645)
+...
T Consensus 386 ~f~~ 389 (428)
T PRK01029 386 VYSA 389 (428)
T ss_pred EEEE
Confidence 6433
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=2.6e-09 Score=98.93 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=136.9
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE--Ee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEE
Q 006424 290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVD 364 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~ 364 (645)
..++.|++.+ .++++-.+|.+.+-+........ .. .|.-+++.+.|+..+.+++++|+.|+.+..||+|... .+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4577788776 78899999999966655444433 33 3888899999998788999999999999999999433 222
Q ss_pred --eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424 365 --WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441 (645)
Q Consensus 365 --~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg 441 (645)
...|...|.++.-+| .+.++++|+.|-.|++||.++...+...... ++.|..+.++|.-...++.++.-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-------~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-------GGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-------ccceEEEEecchhhhHHHHHHHhc
Confidence 355778899998877 5779999999999999999977665532222 378999999997534455555555
Q ss_pred eEEEEECCcceee-----EeecCCCCCeEEEEEecCCCEEEEEe-CCccEE-EEeCCCC
Q 006424 442 KLRILDGVDVIHK-----FKGLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDEL 493 (645)
Q Consensus 442 ~I~iwd~~~~~~~-----~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~-iwd~~~~ 493 (645)
..+|.+....... .....|.+-...-.|.....+|||++ .|+.++ +|-.-++
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5677765432221 11123555555556644456788876 466644 6654433
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=1.8e-09 Score=101.98 Aligned_cols=253 Identities=15% Similarity=0.163 Sum_probs=176.1
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+.+.+.++||.+.|+....-|-..-+++.+.|.+++||--.+.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds------------------------------------ 56 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS------------------------------------ 56 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc------------------------------------
Confidence 34467778999999999999998888999999999999965431
Q ss_pred CCCceeccCCCc-eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC----CCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424 269 PDEVFQIEESPL-QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----CNQCLNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 269 ~~~~~~~~~~~~-~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~----~~~~~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
++.- ........+++++.+.++. .|+.|-..|++.-+.+. .....+.+ .|...+..+-|+- ...
T Consensus 57 --------~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e 127 (404)
T KOG1409|consen 57 --------GQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THE 127 (404)
T ss_pred --------cccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-Cce
Confidence 1111 1112245788899998876 78888888999888653 23333333 4889999999987 778
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 342 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
.+++.+.|..+.---.+.+..+.-.......+++.+.-. +..+|...|.+..-.+....... ..+...|.+.+
T Consensus 128 ~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~ 200 (404)
T KOG1409|consen 128 WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEV 200 (404)
T ss_pred eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCce-----EEEEcCcccce
Confidence 888888887654333343332211111111112222111 56667777777766655443322 22234456899
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
++++|.+.. ..+++|..|..+.+||+. .....+....|...|..+..-+.-+.+++++.||.|-+|+++...
T Consensus 201 ~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 201 TCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 999999986 899999999999999976 333344455588888888888888999999999999999998653
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.8e-09 Score=104.98 Aligned_cols=318 Identities=14% Similarity=0.212 Sum_probs=193.4
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEeC
Q 006424 290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGV 357 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-----------dg~i~vwd~ 357 (645)
=+.+.|||.| +|+|--. .-|.+|--.+-..++.|.|++ |.-+.|+| ..+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4568999998 6666554 458999877777777787876 88999999 9999998663 256999999
Q ss_pred CCCcEEEeecc---CCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 358 CEKRVVDWADV---RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 358 ~~~~~~~~~~~---~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
++|.+...... ... -.-+.||.|++++|.... ..|.||+.....+ .. ........|....|+|.+ ++
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l-ld------~Kslki~gIr~FswsP~~-~l 360 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML-LD------KKSLKISGIRDFSWSPTS-NL 360 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee-ec------ccccCCccccCcccCCCc-ce
Confidence 99987763322 222 234689999999998765 5788998765332 11 111123568889999985 66
Q ss_pred EEEEECC-----CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe----------CCccEEEEeCCCCCcCCC
Q 006424 434 IMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG----------DDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 434 l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s----------~dg~I~iwd~~~~~~~~~ 498 (645)
||-=+.. .++-+..+......-...-+.-.=..+.|-.+|.+|+.-- .-..+-|+.++....+.
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv- 439 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV- 439 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-
Confidence 6543321 2344444332111111111222223566777888887532 11235566665543222
Q ss_pred cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC---ccC-CCCccccCccccCCCCCCcCC
Q 006424 499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIR-DSERFSLGSWFSNDGPCRGSA 574 (645)
Q Consensus 499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~-~~~~~~~~~~fs~dg~~l~s~ 574 (645)
....-...+++.+|-|.|...+.+........+.++....... .+. -..-+.+.+.|||.|++++.+
T Consensus 440 ---------e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 440 ---------EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred ---------eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEE
Confidence 2222245688999999999998877776655555544432111 111 122467888999999977654
Q ss_pred CCC--CCcCCCCCCccCCCCCcCChhhhHhhhhhc-cCCC-CCccCCCCcceEEEEecC------CCeEeEEEecCc
Q 006424 575 TWP--AEKLPLWDVTIDSDGYCQDPQQQRLQQQCL-NNVD-DVRAISATWGLVIVTAGC------DGMIKTFHNYGL 641 (645)
Q Consensus 575 s~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~d~~~ivt~s~------Dg~Iriw~~~g~ 641 (645)
..- .|.+..+|+.-. .++...+ .|.. ..+.+.|. |++++|++. |.--|||.++|-
T Consensus 511 ~l~s~~g~l~F~D~~~a-----------~~k~~~~~eh~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYA-----------DLKDTASPEHFAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EecccccceEEEecchh-----------hhhhccCccccccccceECCC-CCEEEEeeehhhhccccceEEEEeecH
Confidence 432 566777776642 1122222 1211 12334454 999999875 455678888874
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.9e-07 Score=87.66 Aligned_cols=254 Identities=16% Similarity=0.234 Sum_probs=169.0
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
-.+.+..+-|+|+|++++|.++-.+ |.|..|.++... +.+.+.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------G~Lt~l---------------- 81 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------GRLTFL---------------- 81 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------CeEEEe----------------
Confidence 3577789999999999999888654 677777776410 000000
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCC-CeE---EEEecCCCc----------EEEEEEee
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQFNP 337 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~-~~~---~~~~~~~~~----------v~~l~~~p 337 (645)
. .....| .+-..++.++++ +++++.. -|.|.++-+.. |.. +....|.+. +.+..+.|
T Consensus 82 ---n--~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 82 ---N--RQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred ---e--ccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 0 011112 222778888888 6776655 47899998854 433 233345544 88899999
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeec
Q 006424 338 IDDNYFISGSI-DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 338 ~~~~~l~s~s~-dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
+++++++... --.|.+|++..+.+.. ........+.|.|+|++++.++.++ +++|.+|...........+...
T Consensus 155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred -CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 9999888764 2469999999877654 2345567889999999999887765 8899999998753333322221
Q ss_pred cc---cccCCCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcc--eeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-
Q 006424 412 DR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV--IHKFKG--LPKSGSQMSASFTTTGKHIISIGDD- 482 (645)
Q Consensus 412 ~~---~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~--~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d- 482 (645)
.. ..........|..+++| ++|.++.+ ...|.++.+... ...+.. ..+........|++.|++|+++..+
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred ccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 11 11123567789999998 67776654 357888876532 222222 2233446889999999999998864
Q ss_pred ccEEEEeCCCC
Q 006424 483 CRVYVWNYDEL 493 (645)
Q Consensus 483 g~I~iwd~~~~ 493 (645)
..|.+|..+..
T Consensus 313 d~i~vf~~d~~ 323 (346)
T COG2706 313 DNITVFERDKE 323 (346)
T ss_pred CcEEEEEEcCC
Confidence 57999987654
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=4.9e-10 Score=125.64 Aligned_cols=188 Identities=18% Similarity=0.286 Sum_probs=149.5
Q ss_pred ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
+.|-..|.++.-+|.. +.+||+.||.|++|....++.+..++ .+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 3355677777777765 88999999999999999998888775 447899999999 8999999999999999999977
Q ss_pred cEEEeeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 361 RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
.......|....+.+.|-. ..+++++ .++.+.+||..-...... .+ ..|...++++++.|.. +++++|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~---~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL---VH---TCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce---ee---eecCCCceEEEEcCcc-eEEEec
Confidence 7777888988888888865 5566653 568999999754332211 11 3356889999999996 899999
Q ss_pred ECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 438 SEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 438 s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+.+|.|++||++.. .+.+.. ++ ...++++|+..|.|+||++...
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999998743 322222 44 6789999999999999999876
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=4.1e-08 Score=94.22 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=170.5
Q ss_pred CCcEEEEecCCC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC--CcEEEe---eccCCCeEE
Q 006424 307 DKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE--KRVVDW---ADVRDVISA 374 (645)
Q Consensus 307 dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~--~~~~~~---~~~~~~v~~ 374 (645)
+.-|++|++.+. ..+........++-++|+| +.+.|+++..+ |.|-.|.+.. |++..+ .....+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999999732 2334445777889999999 88888887654 6677776654 555432 222344588
Q ss_pred EEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEee--cccc----ccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEE
Q 006424 375 ICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDF--HDRK----KTSGNKITGIQFSRDESQRIMITS-EDSKLRIL 446 (645)
Q Consensus 375 l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--~~~~----~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iw 446 (645)
++++++|++++++. ..|.|.++-++........+.. +... +.....+-+..+.|++ ++|++.. .-.+|.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEE
Confidence 99999999988875 4689999998764333222111 1111 1112237788999998 5666654 34689999
Q ss_pred ECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecC
Q 006424 447 DGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 522 (645)
Q Consensus 447 d~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s 522 (645)
++.+....... .........|.|+|++++....++ +++|-+|.++........-......-..|..+...-++.-+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 97633221111 124556789999999999887775 89999999988521111100000001124444455567778
Q ss_pred CCCccccccCCCCccccCccccc----cccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 523 GIGTEQKSLCSSSLRDCSQKWDN----LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
+||.+|..+....-.-....-+. +.........+.+-+...|+++|++|+.+......|.++.+.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 88888876554321000000011 111222333344467778999999888887766678888654
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=117.01 Aligned_cols=147 Identities=24% Similarity=0.439 Sum_probs=125.5
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeecc
Q 006424 206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 285 (645)
Q Consensus 206 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (645)
+.++++.-++++|+.-+.|.+|+... +..+. .+.|
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------------------dn~p~-~l~G 173 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHE--------------------------------------------DNKPI-RLKG 173 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccc--------------------------------------------cCCcc-eecc
Confidence 44567777999999999999999863 12233 6789
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 362 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 362 (645)
|.+.|.++.|+.+| +++++|.|.++++|++++.+... -|+|+..|+.+.|+| + .+++++.|-+.++|+.....+
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence 99999999999887 99999999999999999887765 568999999999998 4 999999999999998877766
Q ss_pred EEeecc-CCCeEEEEEccCCCEEEEEecCCeEEEEEecC
Q 006424 363 VDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASG 400 (645)
Q Consensus 363 ~~~~~~-~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~ 400 (645)
..+.+| ...+..+...++....++++.||.+++|++.+
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 666666 45689999999999999999999999999864
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2.7e-07 Score=106.92 Aligned_cols=205 Identities=13% Similarity=0.148 Sum_probs=134.7
Q ss_pred CeEEEEEcCCC-eEEEE-eCCCcEEEEecCCCeEEEEecC-----------------CCcEEEEEEeeCCCCEEEEEeCC
Q 006424 289 DVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFDH-----------------HNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~-s~dg~I~iwd~~~~~~~~~~~~-----------------~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
....+++++++ .|+.+ ...+.|+++|..++......+. -.....++++|.++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 35678888764 55544 4567899999877654322110 12346789998555666777778
Q ss_pred CcEEEEeCCCCcEEEeecc---------------CCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEE-----
Q 006424 350 GKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV----- 408 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~---------------~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~----- 408 (645)
+.|++||..++....+.+. -.....++++|+|+.|+++ +.++.|++||+.+........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988766543221 1235679999999865554 556899999988654321100
Q ss_pred -----eeccc----cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEeecC------------CCCCeEE
Q 006424 409 -----DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQMS 466 (645)
Q Consensus 409 -----~~~~~----~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~------------~~~~i~~ 466 (645)
.+... .........+++++++| .++++-+.++.|++||..... ..+.+.. .-....+
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00000 00001234688999998 688888889999999976432 2222211 1125678
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
++++++|+.+++-+.+++|++||+.++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999998899999999998764
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=6.2e-08 Score=88.73 Aligned_cols=228 Identities=11% Similarity=-0.051 Sum_probs=147.2
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC-CCeEE
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISA 374 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~v~~ 374 (645)
.++|+.|+..|...+|...+.+....+ . +...|+-+.=.-.....+..++.|.++++.++..+......... -.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 358999999999999999876654333 2 33333222111102234667788999999988765433321111 33889
Q ss_pred EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 454 (645)
Q Consensus 375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~ 454 (645)
+.++++++++++.+....|.+|.+.........+..... ...-.+.+|+... ..+|++..||++.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t----~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT----SDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc----CCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence 999999999999999999999999876554443222221 2445678899886 79999999999999998743221
Q ss_pred -----EeecCCCCCeEEEEEecCCC--EEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCc-EEEEecCCCCc
Q 006424 455 -----FKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQWPGIGT 526 (645)
Q Consensus 455 -----~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~v~~s~~~~ 526 (645)
-....|.+.+..+.|++.|. +|+..-.-+.+.+-|++++............ .+.|... +....|+.++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---ERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---cccccccccccccccCCCc
Confidence 12244889999999998663 4555555688999999987422211111111 2233333 56666776666
Q ss_pred cccccCC
Q 006424 527 EQKSLCS 533 (645)
Q Consensus 527 ~l~~~~~ 533 (645)
.......
T Consensus 316 s~~v~~e 322 (344)
T KOG4532|consen 316 SNDVKNE 322 (344)
T ss_pred ccccccc
Confidence 5554333
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=4.8e-08 Score=97.65 Aligned_cols=269 Identities=11% Similarity=0.023 Sum_probs=154.3
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC----------CCcEEEEeCCCCcEEEeeccCC-------
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRD------- 370 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~------- 370 (645)
++|.+.|..+++.+..+........+ ++| +++.++++.. +..|.+||..+.+.........
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 89999999999999988755444555 899 8887776665 7889999999988876444322
Q ss_pred -CeEEEEEccCCCEEEEEe-c-CCeEEEEEecCCceeeeEEeecccccc-CCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 371 -VISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 371 -~v~~l~~sp~g~~l~~g~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
....+.++|||+++++.. . ++.+.+.|+.+.+...+ +...+.... ....-..+..+.||....++...+|....=
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 234789999999999876 3 68999999998876432 222211000 001111222334443233333333332210
Q ss_pred ECCcceeeEeec---CCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc---eeeeeecCCcEEEE
Q 006424 447 DGVDVIHKFKGL---PKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR---SCEHFFSEGVSVAV 519 (645)
Q Consensus 447 d~~~~~~~~~~~---~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~v 519 (645)
. ...+... ....+ .|++ +|+++....+ |.|++-|+............... .-..+.|.|.- .+
T Consensus 184 ~----~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q-~i 253 (352)
T TIGR02658 184 P----TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ-QV 253 (352)
T ss_pred e----eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce-eE
Confidence 0 0111110 00112 4456 8888877766 99999997665322211110000 00023344432 37
Q ss_pred ecCCCCccccccCCCCc-------cccCccccccccCC-ccCCCCccccCccccCCCC-CCcCCCCCCCcCCCCCCccC
Q 006424 520 QWPGIGTEQKSLCSSSL-------RDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 520 ~~s~~~~~l~~~~~~~~-------~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~-~l~s~s~~d~~i~iWd~~~~ 589 (645)
++++++..++.+..... ...+.+.+...... ....-+....+++|||||+ ++..+.+.++.|.+.|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 78888887776432111 01122222211111 1112345677899999999 77777765788999998887
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=6.8e-09 Score=96.17 Aligned_cols=198 Identities=16% Similarity=0.188 Sum_probs=134.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
-.++.|++.+.-++++-.+|.+.+-+.... .-+.++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------------------------------------------~le~vq~ 160 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-------------------------------------------VLEKVQT 160 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-------------------------------------------eeeeccc
Confidence 457788888888888888888874433221 0233567
Q ss_pred eccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecC-CCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 283 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~-~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
+++|..+++.+.|+.. +.+++|+.|+.+..||++ .++.+... .|...|.++.-+|..+.++++|+.|..|++||.
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence 8899999999999854 489999999999999998 44444432 388899999999878899999999999999999
Q ss_pred CC-CcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 358 CE-KRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 358 ~~-~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
|. ++.+.-....+.|..+..+|.-. .++.++.-.-.++-+.+....... +.+. ....|.+-+..-.|.... .+++
T Consensus 241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~-~~~~-s~~~hdSl~YG~DWd~~~-~~lA 317 (339)
T KOG0280|consen 241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ-IVLP-SDKIHDSLCYGGDWDSKD-SFLA 317 (339)
T ss_pred hcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh-eeee-ccccccceeecccccccc-ceee
Confidence 94 77777667778999999999432 333334444456666665443311 1111 112233444444553332 4677
Q ss_pred EEE-CCCeEE-EE
Q 006424 436 ITS-EDSKLR-IL 446 (645)
Q Consensus 436 ~~s-~dg~I~-iw 446 (645)
+++ .|+.++ +|
T Consensus 318 TCsFYDk~~~~~W 330 (339)
T KOG0280|consen 318 TCSFYDKKIRQLW 330 (339)
T ss_pred eeeccccceeeee
Confidence 754 344433 44
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.3e-06 Score=87.53 Aligned_cols=245 Identities=12% Similarity=0.097 Sum_probs=143.3
Q ss_pred ECCCCCEEEEEeC----------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 208 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 208 fspdg~~L~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+||||+.|..+.. +..|.+||..+.........+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---------------------------------- 98 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---------------------------------- 98 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC----------------------------------
Confidence 9999997776655 78899999998544322111100
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEe-C-CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~-dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
+. +. ....-..++++|+| +|+... . +..|.+.|+.+++.+..+.-.+...-...++ +. .+ +-+.||....
T Consensus 99 -p~--~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~-~~-~~~~Dg~~~~ 171 (352)
T TIGR02658 99 -PR--FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DT-FF-MHCRDGSLAK 171 (352)
T ss_pred -ch--hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-Cc-cE-EEeecCceEE
Confidence 00 00 11223457889998 555444 3 7899999999999999887655333333332 22 22 2233555444
Q ss_pred EeCCC-CcEEE----eecc-CCCe-EEEEEcc-CCCEEEEEecCCeEEEEEecCCceeee-EEeecccc----ccCCCCe
Q 006424 355 WGVCE-KRVVD----WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI 421 (645)
Q Consensus 355 wd~~~-~~~~~----~~~~-~~~v-~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~----~~~~~~i 421 (645)
..+.+ ++... +... ..++ ..-.|.+ +|+++.+... |.|.+.|+.+...... .+...... .-....+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33322 22111 1111 0000 0003455 8888888777 9999999765433222 11111100 0112334
Q ss_pred EEEEEcCCCCcEEEEEE---------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEeC
Q 006424 422 TGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY 490 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s---------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~ 490 (645)
.-++++++++..++... ..+.|.++|..+........ -...+.+++++||++ +|++.. .++.|.+.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 44999999844444332 22589999987655544443 345889999999999 887666 5788999999
Q ss_pred CCCCc
Q 006424 491 DELCF 495 (645)
Q Consensus 491 ~~~~~ 495 (645)
.+++.
T Consensus 330 ~t~k~ 334 (352)
T TIGR02658 330 ETGKE 334 (352)
T ss_pred cCCeE
Confidence 88753
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.8e-07 Score=93.94 Aligned_cols=271 Identities=12% Similarity=0.187 Sum_probs=169.5
Q ss_pred ccCcEEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 199 HKGCIWTLKFSPDGRYLASGGE-----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
|.+ |.-+.|||..+||+|=+. ...++|||+.+|...
T Consensus 249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-------------------------------- 295 (698)
T KOG2314|consen 249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-------------------------------- 295 (698)
T ss_pred CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh--------------------------------
Confidence 444 889999999999999753 256899999985432
Q ss_pred cCCCceeccCCCceeecc---CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424 268 IPDEVFQIEESPLQELHG---HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~---h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l 343 (645)
+.+.. ....-.-..||.|+.+++.-...+|.||+..+..++..-. ....|....|+| .+++|
T Consensus 296 -------------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll 361 (698)
T KOG2314|consen 296 -------------RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL 361 (698)
T ss_pred -------------cceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence 22221 1111223578888744444344689999887644433222 345688999999 77777
Q ss_pred EEEeCC-----CcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEecCCceeeeE
Q 006424 344 ISGSID-----GKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGS----------ITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 344 ~s~s~d-----g~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~ 407 (645)
|.-... ..+.+-.+.+++.++... +.-.-..+.|-.+|.+|++-- .-.++.|+.++....+...
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 765432 246666666655544322 222223466777888887632 2235678888888887776
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEe---
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG--- 480 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s--- 480 (645)
+.+. ..|...+|-|.|.++.+..+.+ .++.+|...+....... .-.....+.+.|+|.|++++.+.
T Consensus 442 velk-------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 442 VELK-------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred eecc-------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc
Confidence 6665 5789999999985544444443 67888876632222211 11234567899999999998764
Q ss_pred CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 481 DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 481 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
..|.+.++|++-.......... .....-+-|.|.|.++.++.+
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~e----------h~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPE----------HFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEecchhhhhhccCcc----------ccccccceECCCCCEEEEeee
Confidence 5789999998753211111111 112345779999998886554
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.8e-09 Score=119.78 Aligned_cols=189 Identities=13% Similarity=0.230 Sum_probs=144.3
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
++.|-..|.++.=+|...+-+||+.||.|++|....+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~------------------------------------------ 2241 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ------------------------------------------ 2241 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC------------------------------------------
Confidence 45567789999999999999999999999999987632
Q ss_pred cCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe---CC
Q 006424 276 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---ID 349 (645)
Q Consensus 276 ~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s---~d 349 (645)
.+..+. +-...|+.+.|+.+| .+..+..||.+.+|.+. .++.... -|+.......|-. ..+++++ .+
T Consensus 2242 ---~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2242 ---QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDN 2314 (2439)
T ss_pred ---eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCC
Confidence 222222 223788889998876 88899999999999988 3333333 3888888888863 5666654 46
Q ss_pred CcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 350 GKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 350 g~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
+.+.+||..- +.......|.+.++++++-|..+.|++|+.+|.|++||++..+.... -.. +.
T Consensus 2315 ~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~------------~~~----~~ 2378 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT------------FQA----LD 2378 (2439)
T ss_pred CcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH------------hhh----hh
Confidence 8899999643 33333378999999999999999999999999999999997665321 111 33
Q ss_pred CCCCcEEEEEECCCeEEEEECCcc
Q 006424 428 RDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
. ..++++|+..|.++||++...
T Consensus 2379 -~-~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2379 -T-REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred -h-hheeeccCcccceEEEEcccc
Confidence 2 368999999999999997743
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.3e-09 Score=108.60 Aligned_cols=246 Identities=12% Similarity=0.169 Sum_probs=163.9
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
...+.||+..|..+.--.+.+-+++++.|++|++|.++...-...
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-----------------------------------
Confidence 456789999999998888888999999999999999876210000
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeC-CCCEEEE-E
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFIS-G 346 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~-~~~~l~s-~ 346 (645)
......++..|+.+|.++.|-.+. +++ +.||.|.+||.--++.+.... ..+.+..+...|. +..+++. +
T Consensus 773 ---tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc 847 (1034)
T KOG4190|consen 773 ---TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC 847 (1034)
T ss_pred ---cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec
Confidence 022345778899999999998765 454 457899999987777765442 2222333333331 3344444 4
Q ss_pred eCCCcEEEEeCCCCcEEE------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+...+|+++|.+..+... -.+....+.+++..+.|+.++++-..|.|.+.|.+++..... +... ...
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs-wrpm------ecd 920 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS-WRPM------ECD 920 (1034)
T ss_pred cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-CCcc------cch
Confidence 778999999999866432 233456689999999999999999999999999998875322 1100 011
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEE-EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~i-wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
...++ .|.. +.++....|..+.+ |..-.....+.......+..-+ -.-|.-|+++.....+.+|.
T Consensus 921 llqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 921 LLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 12222 2333 67888888999988 8765555555543222221111 12366788887777788874
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-07 Score=86.38 Aligned_cols=189 Identities=12% Similarity=0.084 Sum_probs=127.3
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--EEE--eeccCCCeEE
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVD--WADVRDVISA 374 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~--~~~~~~~v~~ 374 (645)
.+..++.|.++++.+++.+......... -.+.++++++ ++.++++.+....|..|.+.... ... .....+.-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 5778889999999988644332222111 2388999999 99999999999999999886532 222 3334455567
Q ss_pred EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEEEEECCCeEEEEECCccee
Q 006424 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIMITSEDSKLRILDGVDVIH 453 (645)
Q Consensus 375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~-~l~~~s~dg~I~iwd~~~~~~ 453 (645)
..|+.....+|++..||++.|||++....+..... ..+..|.+.+..+.|++.|.. +|+..-.-+.+.+.|+++...
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 88999999999999999999999998776654332 223346789999999987643 444444558899999885432
Q ss_pred eEee--------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 454 KFKG--------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 454 ~~~~--------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.... ......|....|+.++..+.+.+++ .+.=|++.+
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 2111 1122346777777777666655443 344455543
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.94 E-value=2.2e-06 Score=84.79 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCcEEEEEECCC-eEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 419 NKITGIQFSRDESQRIMITSEDS-KLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg-~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
..|.-..+..++ .-++.|..|| .+-|+|.+... ..+.. .-+.|.++..+|+|++++.+.+...|.+.|++++...
T Consensus 360 ~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 360 GGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 345555555554 4678888887 88889877543 33332 6778999999999999999999999999999998533
Q ss_pred CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC-CccccCccccccccCC-ccCCCCccccCccccCCCCCC
Q 006424 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS-SLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCR 571 (645)
Q Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~-~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l 571 (645)
. +.-+..+.++...|+|++..++-.--+ -....+++.+...... .......+-.+.+|.|||++|
T Consensus 437 ~----------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 437 L----------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred E----------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 2 223345677888888888887743332 2333344444433222 333444566788999999965
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=98.46 Aligned_cols=257 Identities=14% Similarity=0.193 Sum_probs=168.5
Q ss_pred cccccccccccCcEEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg------------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (645)
.+.++++..|+..|+.+.|.|.. -.||++...|.|.+||...
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-------------------------- 98 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-------------------------- 98 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--------------------------
Confidence 44677788899999999998732 1677888889999999876
Q ss_pred ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC---C--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEE
Q 006424 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN---S--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT 331 (645)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~---~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~ 331 (645)
...+..+..|..++..++|-+ + ..|++-....++.+|+..+|+....+. ......
T Consensus 99 -------------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 99 -------------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred -------------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 333556677889999999974 2 257777777899999999999988876 445677
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCC-------CcEEEe-eccCC------------C-------------eEEEEEc
Q 006424 332 CVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDW-ADVRD------------V-------------ISAICYI 378 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~-------~~~~~~-~~~~~------------~-------------v~~l~~s 378 (645)
|+.+.|.+.+.+..-+..|.+.+-+.-. ++..++ ..|.+ . .-.++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 8999998888888777788877776532 222221 11111 0 1135678
Q ss_pred cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEECCCeEEEEECCcceeeEee
Q 006424 379 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKFKG 457 (645)
Q Consensus 379 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~-~~l~~~s~dg~I~iwd~~~~~~~~~~ 457 (645)
|.-+.++.......+.++|++-.... ..+.+.. +.+.-+.+-|++. ..|++...||.+.+|-.+..-..++.
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l-~vvpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCL-AVVPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhcee-EEEEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 87777777777888999999866543 2333332 3344456666542 57889999999999975432222211
Q ss_pred c-----------------CCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424 458 L-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 458 ~-----------------~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
. .....+......|. ...++.--.+|.+.+|.+.++.....
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~ 371 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD 371 (1062)
T ss_pred cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc
Confidence 0 01111122222343 33344444688899999987754433
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=9.1e-08 Score=98.63 Aligned_cols=249 Identities=15% Similarity=0.233 Sum_probs=168.6
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.+.+..-++|.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+-++....
T Consensus 58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E------------------------------ 107 (1189)
T KOG2041|consen 58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE------------------------------ 107 (1189)
T ss_pred ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH------------------------------
Confidence 34555778899999999999999999999999999999999887642210
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 345 (645)
...-....+.|.+++|+.+| .++..-.||.|.+=.++.++....--.......+.|++ |...++.
T Consensus 108 -------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf 173 (1189)
T KOG2041|consen 108 -------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALF 173 (1189)
T ss_pred -------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHh
Confidence 01111245678899999887 78888888888877666443322111122345788999 8888888
Q ss_pred EeCCCcEEEEeCCCCc-------E-EE----eeccCCCeEEEEEc--------cCCCEEEEEecCCeEEEEEecCCceee
Q 006424 346 GSIDGKVRIWGVCEKR-------V-VD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~-------~-~~----~~~~~~~v~~l~~s--------p~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
+-.+|.+.+||....- + +. +...+..+-.++|. |+...++++...|.+.+..-.+...+.
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 8889999999986521 1 11 12223345666663 477899999999999987665554433
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---------CeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCE
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~ 475 (645)
. +.. +..+..+.|+++| ..|++++.+ +.|.+|..- ....+++. ....|++++|-..|-.
T Consensus 254 v---~dt-----gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 254 V---VDT-----GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGLR 322 (1189)
T ss_pred E---Eec-----ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCceE
Confidence 2 111 2678899999998 788887765 356666632 34444544 5667888888766655
Q ss_pred EEEEeCCccEEEEeCC
Q 006424 476 IISIGDDCRVYVWNYD 491 (645)
Q Consensus 476 l~t~s~dg~I~iwd~~ 491 (645)
+|.+ -|+.|++=+++
T Consensus 323 iA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFANIR 337 (1189)
T ss_pred EEEE-ecceEEEEeec
Confidence 5544 35555554443
No 277
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=7.3e-06 Score=79.86 Aligned_cols=221 Identities=17% Similarity=0.190 Sum_probs=145.1
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424 205 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 283 (645)
Q Consensus 205 ~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (645)
+..|.+ ++.++++--..+.|..|+..++.. ..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~ 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence 567887 677777777788999999876321 112
Q ss_pred ccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeCC-------
Q 006424 284 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID------- 349 (645)
Q Consensus 284 ~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~~p~~~~~l~s~s~d------- 349 (645)
... . ...+++. +++.++.+..++ +.++|..+++...... .....+.+++.| ++++.++....
T Consensus 38 ~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 38 DLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID 113 (246)
T ss_dssp ESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred ecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence 211 1 6666776 678777777755 4555998886654443 235788999999 89877776643
Q ss_pred -CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEE
Q 006424 350 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 350 -g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~ 426 (645)
|.|..++.. ++.......-...+.++|+|+++.|++ -+..+.|..|++........ ...+.. ........-.+++
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v 191 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV 191 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence 557888877 666555555667899999999997765 46678899999975443111 111111 0111134778999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEe-cCCCEEEEEe
Q 006424 427 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIG 480 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s 480 (645)
..+| ++.++....+.|.++|... ....+.. ....+++++|. ++.+.|+..+
T Consensus 192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp BTTS--EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCC-CEEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEEe
Confidence 9998 7777778899999999763 3333444 33489999994 6766665543
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.90 E-value=8e-07 Score=92.69 Aligned_cols=186 Identities=10% Similarity=-0.020 Sum_probs=115.1
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE----
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS---- 373 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~---- 373 (645)
++.++.++.++.+..+|..+|+.+........+.+.-.. .++.++.++.++.++.||.++++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 468888899999999999999988777644444332222 24567777889999999999988765433322211
Q ss_pred --EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc-CCCC---e-EEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 374 --AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNK---I-TGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 374 --~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~---i-~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
+... .+..++++..+|.+..+|..++..... ......... .... + ....+. + ..+++++.+|.++.+
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~-~~~~~~~g~~~~~~~~~~~~~p~~~-~--~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE-QRVALPKGRTELERLVDVDGDPVVD-G--GQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee-eccccCCCCCchhhhhccCCccEEE-C--CEEEEEEcCCEEEEE
Confidence 1111 234678888899999999987765322 111100000 0000 0 011111 2 478888889999999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
|..+......... ...... ..++..++.++.||.++.+|..+++.
T Consensus 257 d~~tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 257 DLRSGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred ECCCCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE
Confidence 9875544443321 111122 23567888888999999999988743
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=5.3e-07 Score=102.50 Aligned_cols=242 Identities=11% Similarity=0.198 Sum_probs=157.2
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..+.|.++.|-++..-|+.+..+|.|.+....... +..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~------------------------------------------~~~ 111 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP------------------------------------------DED 111 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC------------------------------------------CCc
Confidence 45789999999999999999999999998332100 012
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---------------CCeEE--------EEe----------
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------------CNQCL--------NVF---------- 324 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---------------~~~~~--------~~~---------- 324 (645)
.+.....-...|.+++||||+ .|+..+.++++.+-+-. ..+.+ ..|
T Consensus 112 ~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~ 191 (928)
T PF04762_consen 112 EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR 191 (928)
T ss_pred eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence 233333456789999999997 77778878888775311 00111 111
Q ss_pred ---------------cCCCcEEEEEEeeCCCCEEEEEeC---C---CcEEEEeCCCCcEEEe-eccCCCeEEEEEccCCC
Q 006424 325 ---------------DHHNYVTCVQFNPIDDNYFISGSI---D---GKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGK 382 (645)
Q Consensus 325 ---------------~~~~~v~~l~~~p~~~~~l~s~s~---d---g~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g~ 382 (645)
...+.-..++|-. ||.++|+.+. . +.++||+-+ |.+... ....+--.+++|.|.|+
T Consensus 192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 192 QLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN 269 (928)
T ss_pred hccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC
Confidence 0112345678988 9999998875 2 579999976 554442 23334456789999999
Q ss_pred EEEEEec---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----eeeE
Q 006424 383 GFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----IHKF 455 (645)
Q Consensus 383 ~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----~~~~ 455 (645)
++|+... ...|.+|.-++.+.. .+.+.. ......|..+.|++++ ..|+....|. |.+|-..+. .+.+
T Consensus 270 lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~--~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERNGLRHG--EFTLRF--DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEI 343 (928)
T ss_pred EEEEEEEcCCCcEEEEEecCCcEee--eEecCC--CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEE
Confidence 9998764 346777776554332 222221 1224678999999997 7888877655 999987642 2333
Q ss_pred eecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCC
Q 006424 456 KGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 456 ~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~ 491 (645)
... ....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 344 ~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 344 RFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred Ecc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 322 23345559999964 457777777887766653
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-08 Score=95.42 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=154.7
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..+.|+++.|...|.||++|...|+|.+|.-.... .+ +.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~c---------------------------------------eyk 64 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GC---------------------------------------EYK 64 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-cc---------------------------------------chh
Confidence 34569999999999999999999999999765422 00 011
Q ss_pred CceeeccC------------ccCeEEEEEcCC-C--eEEEEeCCCcEEEEecCCCeE--EEEecC--------CCcEEEE
Q 006424 279 PLQELHGH------------KGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQC--LNVFDH--------HNYVTCV 333 (645)
Q Consensus 279 ~~~~l~~h------------~~~V~~l~~s~~-~--~l~s~s~dg~I~iwd~~~~~~--~~~~~~--------~~~v~~l 333 (645)
....+++| ...|..+.|..+ + .++..+.|.+|++|.+..... +..-.. .+++++.
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~ 144 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST 144 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence 12223333 356788888754 3 677888999999999864422 111111 1111110
Q ss_pred ------EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 334 ------QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 334 ------~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
..+. ...++++ ....+....|...+++++|+.|...++++ .|=.|.+|++.-.......
T Consensus 145 ~~l~lprls~--hd~iiaa------------~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnI 209 (460)
T COG5170 145 KELLLPRLSE--HDEIIAA------------KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNI 209 (460)
T ss_pred HHhhcccccc--cceEEEe------------ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEE
Confidence 1111 0111111 11112234577789999999888777655 5778999998765554444
Q ss_pred Eeeccccc-cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc------eeeEee----c------CCCCCeEEEEEe
Q 006424 408 VDFHDRKK-TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV------IHKFKG----L------PKSGSQMSASFT 470 (645)
Q Consensus 408 ~~~~~~~~-~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~------~~~~~~----~------~~~~~i~~v~~s 470 (645)
+....+.. .-...|++..|+|.....+.-++..|.|++-|+++. ...+.. . .-...|..+.|+
T Consensus 210 VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs 289 (460)
T COG5170 210 VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFS 289 (460)
T ss_pred EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEc
Confidence 44333211 113468899999987788888999999999998721 111111 0 113467889999
Q ss_pred cCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 471 TTGKHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 471 p~~~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
++|+++++-+ =-+|+|||++..+.+...
T Consensus 290 ~ngryIlsRd-yltvkiwDvnm~k~pikT 317 (460)
T COG5170 290 DNGRYILSRD-YLTVKIWDVNMAKNPIKT 317 (460)
T ss_pred CCCcEEEEec-cceEEEEecccccCCcee
Confidence 9999998864 468999999987655443
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3.5e-07 Score=93.02 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=142.3
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEe------e-------------CCCCEEEEEeCCCcEEEEe
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~------p-------------~~~~~l~s~s~dg~i~vwd 356 (645)
+++..+.||.+++||...++....|. ..+..++..|. | .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 88999999999999999998887774 34455555553 1 1445788888999999999
Q ss_pred CCCCcEEEe---eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 357 VCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 357 ~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
+..+++... ..|.+.|.++.++.+-..|.+++.|+.+..|+........ .+... ...+.+++.+||| ..
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-~~~~~------~~~~~sl~is~D~-~~ 158 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-IWKEQ------KPLVSSLCISPDG-KI 158 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-eeccC------CCccceEEEcCCC-CE
Confidence 999988763 4688999999999999999999999999999998765432 22222 2578899999997 67
Q ss_pred EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-----CCEEEEE-eCCccEEEEeCCC
Q 006424 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE 492 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-----~~~l~t~-s~dg~I~iwd~~~ 492 (645)
+++++ +.|++||+.+........+|.++|.++.|..+ |.++.++ ..+.-|.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77776 57999998865555555559999999999877 6776654 3466788887665
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=2.6e-06 Score=79.74 Aligned_cols=189 Identities=17% Similarity=0.204 Sum_probs=113.7
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--------cCCCcEEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006424 288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPID-----DNYFISGSIDGKVR 353 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--------~~~~~v~~l~~~p~~-----~~~l~s~s~dg~i~ 353 (645)
..=.-++|+||+ .|+.+...|+|+++|+..... ..+ .....|..+.|.+.. ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 345678999998 888899999999999974332 222 134567777776522 22566777788888
Q ss_pred EEeCCCC---c---E--EEee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 354 IWGVCEK---R---V--VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 354 vwd~~~~---~---~--~~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
-|-+..+ . . ..+. .....|.++.++|..++|++|+.... +... .......+++-
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaW 185 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAW 185 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEE
Confidence 7775322 1 1 1122 24678999999999998888764322 0000 00001233333
Q ss_pred EEcCCCCcEEEEEEC-CCe------EEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 425 QFSRDESQRIMITSE-DSK------LRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~-dg~------I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
..-.+.+.+..+.+. |+. ..+|.+-. ...+.. ......|..|..||||+.||+...+|.|.+|++.+...
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 333332223222222 221 12222221 111111 23567899999999999999999999999999988743
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=1.7e-06 Score=90.33 Aligned_cols=202 Identities=11% Similarity=0.133 Sum_probs=127.0
Q ss_pred CCCceeeccCccCeEEEEEcCCC-e-EEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCC-
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSID- 349 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~-l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~d- 349 (645)
+...+.+... +......|+|++ . ++..+.+ ..|.++|+.+++........+......|+| |++.++. .+.+
T Consensus 178 g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g 255 (419)
T PRK04043 178 LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKG 255 (419)
T ss_pred CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCC
Confidence 3333434333 377889999997 3 5544443 568999999888766666666677788999 8876654 3333
Q ss_pred -CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 350 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 350 -g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
..|.++|+.++....+..+........|+|||+.|+..+. .| .|+++|+.++... .+...+ .. ...
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g------~~--~~~ 325 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG------KN--NSS 325 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccCC------Cc--Cce
Confidence 4688889988887776665554456789999998777664 33 5777777665542 121211 11 248
Q ss_pred EcCCCCcEEEEEECC--------CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424 426 FSRDESQRIMITSED--------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 493 (645)
Q Consensus 426 ~s~~g~~~l~~~s~d--------g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~ 493 (645)
|+|+|..++++.... ..|.+.|+.... ..+.. ........|+|||+.|+..+.+ ..+.+.+++..
T Consensus 326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 999995444444332 367888865332 22222 1233357899999988776543 24666666554
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.1e-08 Score=103.66 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=162.7
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.+.+.++..+|.|+-+|.++.-| +.+-|+... ..+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p--------------------------------------------~~p 58 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP--------------------------------------------FTP 58 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCC--------------------------------------------CCC
Confidence 45688999999999999998877 556676651 222
Q ss_pred ceeec-cCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCC--CeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 280 LQELH-GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGC--NQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 280 ~~~l~-~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~--~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.+-+. -..-.|-.+.|++. .+-+.......-.+|++.. .+.+. ..+|...|+.+.|+|.....+++++.|..
T Consensus 59 pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~ 138 (1081)
T KOG0309|consen 59 PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY 138 (1081)
T ss_pred ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc
Confidence 22222 11234566777754 2333444445566888742 23333 33688999999999988899999999999
Q ss_pred EEEEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
+..||+++... ..+......-..+.|+.....+.+.+....|.+||++.+..+...+.- |...|..+.|..-
T Consensus 139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~------~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG------HVSSVNSIDFNRF 212 (1081)
T ss_pred ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc------cceeeehHHHhhh
Confidence 99999998543 334555667788999987777777888899999999987766543322 3467888888765
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEE--EeCCccEEEEeCCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIIS--IGDDCRVYVWNYDELC 494 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t--~s~dg~I~iwd~~~~~ 494 (645)
-...+.+.+.|++|+.||..+...... ......+|..-.+-|-|+-..+ --.+..+.+++.++..
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d 280 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD 280 (1081)
T ss_pred hhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence 446789999999999999664322221 1223456677677775542222 2223356666665543
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=1.5e-06 Score=85.89 Aligned_cols=246 Identities=10% Similarity=0.137 Sum_probs=159.7
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCC-cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
+|.+.|.-..+..+++-++.|..|| .+-|+|..++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------------------------------------------- 392 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------------------------------------------- 392 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence 5777788888888888888888888 7888887653
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC----
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG---- 350 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg---- 350 (645)
.+..+.+.-+.|.++..+++| +++.+.....+.+.|++++.....-. ..+-|+.+.|+| +++.+|-+-.+|
T Consensus 393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq 469 (668)
T COG4946 393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence 345566677889999999998 67777777899999999987654433 556899999999 999999887665
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-------CCeEEEEEecCCceeeeEEeeccc----------
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDR---------- 413 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~---------- 413 (645)
.|+++|+.+++..........-.+-+|.|++++|.--+. |..+.-+....-..+.......+.
T Consensus 470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~ 549 (668)
T COG4946 470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDE 549 (668)
T ss_pred eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchh
Confidence 699999999999887777766777889999998776542 333322222111111110000000
Q ss_pred cccC---------CCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------------cceeeEee-----cCCCCCe
Q 006424 414 KKTS---------GNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVIHKFKG-----LPKSGSQ 464 (645)
Q Consensus 414 ~~~~---------~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------------~~~~~~~~-----~~~~~~i 464 (645)
.... ...+.-+-..+ +....+++-.+|.|.++... ..+..+.. ..-...+
T Consensus 550 ~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nv 628 (668)
T COG4946 550 ANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNV 628 (668)
T ss_pred cCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhccc
Confidence 0000 00000011111 12345555666666665421 00111111 1123467
Q ss_pred EEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 465 MSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 465 ~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.++..|+|++.+.. -.||.++++|++.
T Consensus 629 ss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 629 SSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 89999999999988 7899999999986
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=1.9e-06 Score=90.10 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=162.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.-.++.|+|.| ++|-|+.. .|.+-|..+ .+.++
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s---------------------------------------------~q~iq 49 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRS---------------------------------------------LQLIQ 49 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhh---------------------------------------------hhhhh
Confidence 35678899888 67777654 577777765 56678
Q ss_pred eeccCccCeEEEEEcC----------C--C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC--CC-CEEE
Q 006424 282 ELHGHKGDVLDLAWSN----------S--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFI 344 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~----------~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~--~~-~~l~ 344 (645)
.+.-|...|+.+.|.| . . .|+++...|.|.+||...+..+..+. +.+++..++|-|. +. ..|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 8888999999999974 1 1 47778888999999999888888776 6678999999772 22 4566
Q ss_pred EEeCCCcEEEEeCCCCcEEEee-ccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCce---eeeEEeeccccc----
Q 006424 345 SGSIDGKVRIWGVCEKRVVDWA-DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDRKK---- 415 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~~~-~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~---- 415 (645)
.-....++.+|+..+|+..--. .......|+.+.| |.+.+..-+..|.+.+-+.-.... +.+.+.......
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH 209 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence 6666789999999988876543 3444566689998 667777777788777766532221 122221111100
Q ss_pred ---------cCCC------C---eEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecC--C
Q 006424 416 ---------TSGN------K---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT--G 473 (645)
Q Consensus 416 ---------~~~~------~---i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~--~ 473 (645)
.+.. - ...++|+|.- +.++-......+.++|++ ........ ..+.+.-+.+-|+ .
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpi--er~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEe--ccCCcceeEeccCCCc
Confidence 0000 0 1134577874 445555667789999976 33333333 3444445555554 5
Q ss_pred CEEEEEeCCccEEEEeCCC
Q 006424 474 KHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~ 492 (645)
..|++.-.||.+.+|-.+.
T Consensus 287 d~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEecCCeEEEEEeec
Confidence 6799999999999998765
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=1.8e-06 Score=100.18 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=129.4
Q ss_pred EEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecC---------------CCcEEEEEEeeCCCCEEEEEe-CCCcE
Q 006424 291 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV 352 (645)
Q Consensus 291 ~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~~p~~~~~l~s~s-~dg~i 352 (645)
..+++++. + .+++-+.++.|+++|.. +..+..+.. -.....+++++ +++.|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 35677753 5 56676778899999986 444433321 12357889998 777666554 45779
Q ss_pred EEEeCCCCcEEEeecc-----------------CCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-
Q 006424 353 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR- 413 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~-----------------~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~- 413 (645)
+++|+.++.+..+.+. -.....++++| ++..+++.+.++.|++||..+..... +.-.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--EecCCcc
Confidence 9999988776554221 12346799999 55556666778899999987654321 110000
Q ss_pred --------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee-Eee-c-------------------CCCCCe
Q 006424 414 --------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQ 464 (645)
Q Consensus 414 --------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~-~-------------------~~~~~i 464 (645)
..........++++|+|..++++.+.++.|++||....... ..+ . ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 00011345679999998556677777899999997643211 110 0 001134
Q ss_pred EEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 465 MSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 465 ~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+++++++|+.+++-+.+++|++||..++
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 68899999999888889999999998765
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=2.1e-06 Score=89.73 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=117.4
Q ss_pred cEEEEEECCCCCE-EEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 202 CIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 202 ~V~~l~fspdg~~-L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.+....|||||+. ++..+.+ ..|.++|+.++..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------------------------------------------- 225 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------------------------------------------- 225 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------------------------
Confidence 7789999999984 6644443 4578888866321
Q ss_pred CCceeeccCccCeEEEEEcCCC-eE-EEEeCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YL-LSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-G-- 350 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-g-- 350 (645)
..+....+......|+||| .+ ++.+.+ ..|.++|+.++.......+........|+| +++.|+..+.. +
T Consensus 226 ---~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 226 ---EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYP 301 (419)
T ss_pred ---EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCc
Confidence 2222234455667899997 44 444444 467788888777554444443344568999 88877666632 3
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---------CeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
.|++.|+.+++...+...... ...|+|+|+.++..... ..|.+.|+.+..... +... ...
T Consensus 302 ~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~-------~~~ 370 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN-------GVN 370 (419)
T ss_pred eEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC-------CCc
Confidence 588889988887654433222 24899999988876653 267788877665321 1111 122
Q ss_pred EEEEEcCCCCcEEEEEECCCe--EEEEECC
Q 006424 422 TGIQFSRDESQRIMITSEDSK--LRILDGV 449 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~--I~iwd~~ 449 (645)
....|+|||...+++....+. +.+.++.
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 357899998544444433333 4455554
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=8.2e-08 Score=99.35 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=138.2
Q ss_pred ceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCe-EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~-~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
...+.||...|+.+.|+++. .+++++.|..|..||+++.. ++..+. -......++|+..+++.+|+. ....|.+|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~i~vw 185 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGNDIFVW 185 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCceEEE
Confidence 34678999999999999875 89999999999999998754 344443 334567789998677766654 45779999
Q ss_pred eCCCCc--EEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 356 GVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 356 d~~~~~--~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
|++.+. +....+|-..|+.+.|+.- ...+.+.+.||+|++||........+.. .....+|..-.+.|-|..
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~------vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT------VTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee------ccccCcceeccccccCce
Confidence 998764 4456678888888888763 3467888999999999987554322211 111255666666665432
Q ss_pred EEEEEE-CCCeEEE---------E---ECCcceeeEeecCCCCCeEEEEEec--------C--CCEEEEEeCCccEEEEe
Q 006424 433 RIMITS-EDSKLRI---------L---DGVDVIHKFKGLPKSGSQMSASFTT--------T--GKHIISIGDDCRVYVWN 489 (645)
Q Consensus 433 ~l~~~s-~dg~I~i---------w---d~~~~~~~~~~~~~~~~i~~v~~sp--------~--~~~l~t~s~dg~I~iwd 489 (645)
+.+.-. .+..+-+ | |..+.+..|.+ |...|...-|-. | .-.|+|-|.|..+++|.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 222211 1122222 2 23456666766 666666555522 1 23699999999999999
Q ss_pred CCCC
Q 006424 490 YDEL 493 (645)
Q Consensus 490 ~~~~ 493 (645)
+.+.
T Consensus 338 I~~~ 341 (1081)
T KOG0309|consen 338 IDSQ 341 (1081)
T ss_pred ccHH
Confidence 8753
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.2e-08 Score=99.99 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=161.7
Q ss_pred CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424 170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 249 (645)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 249 (645)
++++.++.|.-+..-.+.......-+++.|+.+|.++.|-.+-++++++ ||-|.+||.--+......
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~----------- 820 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM----------- 820 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh-----------
Confidence 3344444444444444444444667788999999999999998888865 778999997543221100
Q ss_pred CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEec---
Q 006424 250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD--- 325 (645)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~--- 325 (645)
.. ..-.+-.+.|.|+.--.... ++-|+...+|+++|.+.+.....+.
T Consensus 821 --------------------------~d---apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 821 --------------------------ED---APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred --------------------------hc---CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc
Confidence 00 00112223344443212233 4445788999999999887766553
Q ss_pred ---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEE-EEecC
Q 006424 326 ---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASG 400 (645)
Q Consensus 326 ---~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i-wd~~~ 400 (645)
.+..+++++..| .|+.++.+-.+|.|.+.|.++|+++. +.........++ .|..+.++....|.++.+ |-...
T Consensus 872 a~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 872 APGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 345789999999 99999999999999999999999765 333332222232 255566666667777777 75544
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECC------cceeeEeecCCCCCeEEEEEecCC
Q 006424 401 NDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGV------DVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
+.... ..... ..+ ..|- .-| .-+++......+.+|.-. ..+..++.....+..++++.-|-.
T Consensus 950 gimh~-----q~kpp--pep---ahflqsvg-pSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen 950 GIMHL-----QDKPP--PEP---AHFLQSVG-PSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred Ceeee-----ccCCC--Ccc---hhhhhccC-ceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence 33211 11000 001 1111 123 357777777788888522 222333344456677888888877
Q ss_pred CEEEEEeCCccEEE
Q 006424 474 KHIISIGDDCRVYV 487 (645)
Q Consensus 474 ~~l~t~s~dg~I~i 487 (645)
.-+..|.+.|.|.+
T Consensus 1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhccCCCCceee
Confidence 77888888888765
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=6.2e-08 Score=91.81 Aligned_cols=148 Identities=15% Similarity=0.258 Sum_probs=114.2
Q ss_pred EEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 344 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
++.+.+..|-+-|+.++-...+. ..+.|.++.|...++++..|+..|.|..+|++....-.. ...+.-.|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---WCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC---cceEEEEcCcchhh
Confidence 56666788999999988776665 677899999999899999999999999999987622110 01111123578999
Q ss_pred EEEcC-CCCcEEEEEECCCeEEEEECCc--c---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 424 IQFSR-DESQRIMITSEDSKLRILDGVD--V---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 424 i~~s~-~g~~~l~~~s~dg~I~iwd~~~--~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
+..-. ++ ++|++.+.+|+|++||.+. . +..+.+|.+...-.-+...+....++++++|...+||.++.+...
T Consensus 304 lq~Lq~s~-q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQ-QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhcccc-ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 88776 44 7999999999999999872 2 567777666655566667788889999999999999999988543
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.66 E-value=3e-07 Score=89.27 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=115.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
....+..+|++++||.+..++...++++...... .+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~ 102 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD 102 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence 3556677889999999988888778777652210 01111
Q ss_pred ee--ccCccCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 282 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 282 ~l--~~h~~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
.. ..-...+..+....... .-.++....+.+|....+.+...++|-+.++.++|+| |+++++++..|..|++-...
T Consensus 103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence 11 11223344444333232 2244556677778777788888889999999999999 99999999999999998876
Q ss_pred CCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 359 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 359 ~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
..-.+. ..+|...|..++.-+ +..|++|+.|+++++||+.+++..
T Consensus 182 a~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence 655443 578999999999876 456999999999999999988764
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=3.1e-07 Score=83.94 Aligned_cols=196 Identities=11% Similarity=0.185 Sum_probs=120.1
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEee---------CCCCEEEEEeCCCcEEEEeC
Q 006424 290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP---------IDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p---------~~~~~l~s~s~dg~i~vwd~ 357 (645)
++.+.+..+-.|+++..++.+......++.+....+ ..++..+++.+. ..++-++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 666666666678888888777776655554443322 111222222211 14567899999999999998
Q ss_pred CCCcEEE--eeccCCCeEEEEEccCCCEEEEEe-----cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 358 CEKRVVD--WADVRDVISAICYIPDGKGFIVGS-----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 358 ~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+.-.... .......-.+.++...++.+.++. .-+..+.|+++....... .. . ....|++++-+|..
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~---~-~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP---SK---K-ALDAVTALCSHPAQ 191 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc---cc---c-ccccchhhhCCccc
Confidence 7621111 000111111223333454444432 223455666653332111 00 0 12458999999987
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCC
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~ 492 (645)
...+++|+.||.+-+||.++...... ...|...+..+.|+| ++..|+++++||.+.-||-.+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 78889999999999999885422221 244889999999999 568999999999999999775
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=3.9e-07 Score=83.28 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=70.6
Q ss_pred cEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE--EeeccCCCeEEEEEcc-CCCEE
Q 006424 309 TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGF 384 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~v~~l~~sp-~g~~l 384 (645)
..+.|+++..+....- .....|.+++-+|...+++++|+.||.+-+||.+..... .+..|+.++..+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4556665533322211 233459999999977788899999999999999886433 2567899999999999 67799
Q ss_pred EEEecCCeEEEEEecC
Q 006424 385 IVGSITGTCHFYKASG 400 (645)
Q Consensus 385 ~~g~~dg~i~iwd~~~ 400 (645)
+++++||.+-.||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999875
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=6.9e-08 Score=63.72 Aligned_cols=37 Identities=38% Similarity=0.869 Sum_probs=35.0
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 228 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd 228 (645)
+.+++++|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4577999999999999999999999999999999997
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=3.4e-08 Score=103.97 Aligned_cols=227 Identities=17% Similarity=0.192 Sum_probs=152.6
Q ss_pred ccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424 183 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262 (645)
Q Consensus 183 ~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (645)
+..-|+++...++++.|....+|++|+-+.++|+.|+..|.|+++++.+
T Consensus 1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s------------------------------- 1132 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS------------------------------- 1132 (1516)
T ss_pred chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-------------------------------
Confidence 3345688889999999999999999999999999999999999999987
Q ss_pred cceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCC-cEEEEecCC-CeEEEEecCCCcEEEEEEeeC
Q 006424 263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPI 338 (645)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg-~I~iwd~~~-~~~~~~~~~~~~v~~l~~~p~ 338 (645)
+.......+|...|+-+.-+.+| .|.+++... -..+|++.+ +...++|. .-.++.|+.
T Consensus 1133 --------------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn- 1194 (1516)
T KOG1832|consen 1133 --------------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN- 1194 (1516)
T ss_pred --------------ccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-
Confidence 44456778899999999888777 444444444 578999853 44444443 345778886
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
....-+.|.......+||+.++..+.. ......-++..|+|+..+++- || .+||.+........-.+.
T Consensus 1195 ~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft-- 1267 (1516)
T KOG1832|consen 1195 SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT-- 1267 (1516)
T ss_pred hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--
Confidence 444445555556789999998764431 222333477889998887763 44 589998764322211111
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
.-..-.|+|.| ..++..+. |||+++....... ..-.-+.+.|...|..++..
T Consensus 1268 ------~~~~G~FHP~g-~eVIINSE-----IwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1268 ------DYGGGGFHPSG-NEVIINSE-----IWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ------ecccccccCCC-ceEEeech-----hhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence 11123589998 66666653 8998743221111 12234677888888766543
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=2e-07 Score=87.15 Aligned_cols=234 Identities=13% Similarity=0.251 Sum_probs=140.9
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeE--------ecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 201 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKS--------FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 201 ~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
..|..+.|-.++. .++..+.|++|++|.+......... ..+.+..+. ....+...........+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~--s~~~l~lprls~hd~ii---- 159 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT--STKELLLPRLSEHDEII---- 159 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC--CHHHhhcccccccceEE----
Confidence 3577888876543 5666678999999998753221110 001010000 00001110000000000
Q ss_pred CceeccCCCceee-ccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE----EEEec-----CCCcEEEEEEeeCCC
Q 006424 271 EVFQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVFD-----HHNYVTCVQFNPIDD 340 (645)
Q Consensus 271 ~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~-----~~~~v~~l~~~p~~~ 340 (645)
...+.+.+ ..|...|.+++|+.+...+-.+.|-.|.+|+++-..- +..-. ...-|++..|+|...
T Consensus 160 -----aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 160 -----AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred -----EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 12233333 4788999999999887555556778899999863221 11111 234588999999777
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEE-----------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
+.+...+..|.|++-|++...+.- +.+....|..+.|+++|+++++-+ --++++||.+....
T Consensus 235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~ 313 (460)
T COG5170 235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN 313 (460)
T ss_pred ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence 888888889999999998533211 122345688899999999988754 35899999998887
Q ss_pred eeeEEeecccccc------CCCCe---EEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 404 KLEKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 404 ~~~~~~~~~~~~~------~~~~i---~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
++..+.++..... ....| ..+.|+.+. ..+++|+..+..-+|-
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp 365 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYP 365 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeec
Confidence 7776655432111 01222 246777775 6788888776665554
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=3.2e-05 Score=80.65 Aligned_cols=174 Identities=11% Similarity=0.025 Sum_probs=108.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCC-----c------E-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----Y------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~------v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
++.++.+..++.+..+|.++|+.+....... . + ....+ .++.+++++.+|.++.||..+++....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 3577888889999999999998765442110 0 0 11112 345778888899999999999877654
Q ss_pred eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEE
Q 006424 366 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 445 (645)
Q Consensus 366 ~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~i 445 (645)
..... ..... ..+..+++++.+|.+..+|..+++.......... ....+... .+ ..+++++.+|.|++
T Consensus 267 ~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i--~g-~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 267 RDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAV--VG-GYLVVGDFEGYLHW 334 (377)
T ss_pred eccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEE--EC-CEEEEEeCCCEEEE
Confidence 33222 11222 3567888889999999999987765432111111 11122222 23 48889999999999
Q ss_pred EECCcceeeEeecCCCCCeE-EEEEecCCCEEEEEeCCccEEEE
Q 006424 446 LDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 446 wd~~~~~~~~~~~~~~~~i~-~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
+|..+.........+...+. +..+ .+ +.|+.++.||.|+.|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~-~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVV-VG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEE-EC-CEEEEEeCCceEEEe
Confidence 99775544444332332222 2222 23 458888899999876
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.3e-06 Score=85.85 Aligned_cols=286 Identities=16% Similarity=0.150 Sum_probs=185.3
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-. .-.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------------------------GvE 44 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------------------------GVE 44 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------------------------cee
Confidence 88888877654 45699999999999999754310 012
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC---EEE-EEeCCCcE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN---YFI-SGSIDGKV 352 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~---~l~-s~s~dg~i 352 (645)
.+..+..|-+.|.+++.+-++ .+.|.+. |..++++|+++-..+..+........+.|....+. .++ +.-.++.+
T Consensus 45 fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 45 FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKI 124 (558)
T ss_pred ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCc
Confidence 345667889999999999888 5667677 99999999987766554443333333444331231 233 33457889
Q ss_pred EEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccc-------cccCCCCe
Q 006424 353 RIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDR-------KKTSGNKI 421 (645)
Q Consensus 353 ~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~-------~~~~~~~i 421 (645)
.++|-....+ ..-.-|..+|..+.+++.+..+++....|.|.-|..... +.+...+.+.-. ........
T Consensus 125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred EEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence 9999776442 234457889999999999999999999999999998741 111111111100 11123567
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeE---------------ee----------------cCCCCCeEEEE
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF---------------KG----------------LPKSGSQMSAS 468 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~---------------~~----------------~~~~~~i~~v~ 468 (645)
+++.|+|+| ..+.+-+.|..|++++.... .+.+ .. ......-+.+.
T Consensus 205 ts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 205 TSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred cceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 899999998 78999999999999974311 0000 00 01223446788
Q ss_pred EecCCCEEEEEeCCccEEEEeCCCCCcCCCc--------------------------ccCCcceeeeeecCCcEEEEecC
Q 006424 469 FTTTGKHIISIGDDCRVYVWNYDELCFPSSK--------------------------QKNSVRSCEHFFSEGVSVAVQWP 522 (645)
Q Consensus 469 ~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~~~~g~~~~v~~s 522 (645)
|+..|++|+-|+-=| |++.++.++...... ..........+.++..+++.+|-
T Consensus 284 fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~k 362 (558)
T KOG0882|consen 284 FDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFK 362 (558)
T ss_pred EcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeee
Confidence 999999999887554 677777665321100 01122223346667777788888
Q ss_pred CCCcccc
Q 006424 523 GIGTEQK 529 (645)
Q Consensus 523 ~~~~~l~ 529 (645)
.+..+|+
T Consensus 363 k~rfylf 369 (558)
T KOG0882|consen 363 KNRFYLF 369 (558)
T ss_pred cceEEEE
Confidence 7777776
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.54 E-value=4.2e-05 Score=74.06 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=121.1
Q ss_pred CCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-eccC----CC
Q 006424 297 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV 371 (645)
Q Consensus 297 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~----~~ 371 (645)
.++.+++++.++.+..||..+|+.+..+.....+...... .+..+++++.++.++.+|..+++.... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 4568888899999999999999998887644433222222 456677777888999999999887664 2211 11
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc----CCCCeEEEEEcCCCCcEEEEEECCCe-EEEE
Q 006424 372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT----SGNKITGIQFSRDESQRIMITSEDSK-LRIL 446 (645)
Q Consensus 372 v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~s~dg~-I~iw 446 (645)
.........+..++++..++.+..+|+++++.... ......... ....+..-....++ .++.++.++. +.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~- 188 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK-YPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV- 188 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE-EESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEE-eecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-
Confidence 22233333488899999999999999998876433 222211000 00112222233343 6777777775 555
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
|..+........ ...+.. ....++..|+.++.++.|..||+.+++.
T Consensus 189 d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 189 DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 988766544332 222222 2456788888888999999999999854
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.53 E-value=0.00026 Score=68.90 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=121.0
Q ss_pred EEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec--
Q 006424 292 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-- 367 (645)
Q Consensus 292 ~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-- 367 (645)
+..|.+ ++ ++++--..+.|..|+..++.... +.... ...+++...+ ..++.+.. +.+.++|..+++...+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeecc
Confidence 467887 56 45555568899999998876643 33333 6777787315 55555555 446666999887655433
Q ss_pred ----cCCCeEEEEEccCCCEEEEEecC--------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 368 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 368 ----~~~~v~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
.....+.+++.|+|++.++.... |.+..++.. ...... ... -...+.++|+|++..+++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~-----~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG-----LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE-----ESSEEEEEEETTSSEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC-----cccccceEECCcchheee
Confidence 23568899999999966665433 456666665 232221 111 145789999999855556
Q ss_pred EEECCCeEEEEECCc--c----eeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 436 ITSEDSKLRILDGVD--V----IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~--~----~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
+-+..+.|..++... . ...+.. ....+..-.++++.+|++.++.-..+.|.+++.+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 777889999998642 1 122222 2122347889999999988888889999999977
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.49 E-value=2.9e-06 Score=82.58 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=102.2
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEE
Q 006424 293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVD 364 (645)
Q Consensus 293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~ 364 (645)
+..++++ +++.+..+....++++.... +...+.....-+++.|.. +......+. ....+.+|....+....
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCcch
Confidence 3445666 56666666666676664332 333333344445555554 344444433 34455556555578888
Q ss_pred eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
..+|-+.++.++|+||+++++++..|..|++-....... +. .-.-+|...|..++.-++ +.|++++.|++|+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-Ie-----sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-IE-----SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-hh-----hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 899999999999999999999999999999877654332 22 222234578999999987 5799999999999
Q ss_pred EEECCcc
Q 006424 445 ILDGVDV 451 (645)
Q Consensus 445 iwd~~~~ 451 (645)
+||..+.
T Consensus 219 ~Wd~~sg 225 (390)
T KOG3914|consen 219 LWDITSG 225 (390)
T ss_pred EEecccC
Confidence 9997743
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.46 E-value=8.9e-05 Score=69.61 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=104.2
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
=..++||||+.+||.+...|+|+++|+........ .+.. .
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I--~p~~--------------------------------------~ 85 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI--PPAM--------------------------------------S 85 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEc--Cccc--------------------------------------c
Confidence 35689999999999999999999999875322111 1100 0
Q ss_pred ec-cCccCeEEEEEcC-----C--CeEEEEeCCCcEEEEecCC-----CeEEEEec----CCCcEEEEEEeeCCCCEEEE
Q 006424 283 LH-GHKGDVLDLAWSN-----S--NYLLSCSMDKTVRMWQVGC-----NQCLNVFD----HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 283 l~-~h~~~V~~l~~s~-----~--~~l~s~s~dg~I~iwd~~~-----~~~~~~~~----~~~~v~~l~~~p~~~~~l~s 345 (645)
+. .-...|..+.|.+ + -.|+.-..+|.++=|-+.. .+....|. +...|.++.++| ..++|++
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlV 164 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLV 164 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEE
Confidence 00 1123444444432 1 1577777888877776532 22333332 567899999999 7788877
Q ss_pred EeCCCc-----------EEEEeCCCCcEEEeeccCCCeEEEEE-ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 346 GSIDGK-----------VRIWGVCEKRVVDWADVRDVISAICY-IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 346 ~s~dg~-----------i~vwd~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
|+.... +..|.+-.+. .....+ +.+...-...... .+|.+-+.. +...
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~-------~fs~ 224 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDS----------PYYKQVTSSEDDITASSKRR---GLLRIPSFK-------FFSR 224 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCC----------CcEEEccccCcccccccccc---ceeecccee-------eeec
Confidence 765322 2222211111 000000 0011111111111 122221111 1111
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 452 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~ 452 (645)
.......|..|..|||| ..|++...+|.|.+|++-...
T Consensus 225 ~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence 11224789999999998 899999999999999976443
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.8e-06 Score=84.87 Aligned_cols=203 Identities=13% Similarity=0.175 Sum_probs=143.9
Q ss_pred CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCC
Q 006424 286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEK 360 (645)
Q Consensus 286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~---~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~ 360 (645)
|...|+.+.-....++++++.||.++.|.-..-. .+..+ .|...+.+++.+. ++.++.+.+. |..++++|+..-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeecc
Confidence 7888888877766799999999999999764312 22222 3777888888888 8889999777 999999999775
Q ss_pred cEEEeeccCCCeEEEEEcc-CC---CEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 361 RVVDWADVRDVISAICYIP-DG---KGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp-~g---~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
..............++|.. .| ..++++ ..+|.+.++|-.....+... ...-|..+|.++.+.+.+ ..++
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~-Ds~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAG-DSAV 160 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccc-ccee
Confidence 5443332222222333322 22 134443 45789999998776644321 122345899999999987 7888
Q ss_pred EEECCCeEEEEECCcceee---------------EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 436 ITSEDSKLRILDGVDVIHK---------------FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~~---------------~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
+....|.|.-|......+. +..........++.|+|+|..+.+-+.|..|+++++.+++.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 8888999999986521111 11122456678999999999999999999999999998864
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=0.0004 Score=67.35 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=143.7
Q ss_pred EEEEEECC-CCCEEEEEeCCCc-EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 203 IWTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 203 V~~l~fsp-dg~~L~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
...++.+| .+..++.+-.-|+ ..+||..++....... ...-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------------------------a~~g 49 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------------------------APPG 49 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------------------------CCCC
Confidence 34677888 4556777766664 6788888765433222 2234
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEE-----eCCCcEEEEecC-CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe-----
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS----- 347 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~-----s~dg~I~iwd~~-~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s----- 347 (645)
+.|.|| -.|+++| +|++. +..|.|-|||.. +-+.+..+. +.-....+.+.| ++..|+++.
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~T 122 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIET 122 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCcc
Confidence 567777 4789998 66665 334889999998 556667774 444566778899 887777653
Q ss_pred -------------CCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCC-------eEEEEEecCCc
Q 006424 348 -------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGND 402 (645)
Q Consensus 348 -------------~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg-------~i~iwd~~~~~ 402 (645)
.+..+.+.|..+++++.. ..|.-.+..+++.++|..++..-..| .+-+++....
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~- 201 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA- 201 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-
Confidence 133566677778877653 33666899999999987665544333 2333332221
Q ss_pred eeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424 403 LKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
......... ...-...+-+|++++++....+++-..+.+.+||..+....-.. .-..+..++-.+++ ++++.+
T Consensus 202 --~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG- 275 (305)
T PF07433_consen 202 --LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSG- 275 (305)
T ss_pred --ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCC-
Confidence 111111110 11223678999999998545566677899999997654322222 34456777776666 666554
Q ss_pred CccE
Q 006424 482 DCRV 485 (645)
Q Consensus 482 dg~I 485 (645)
.|.+
T Consensus 276 ~G~~ 279 (305)
T PF07433_consen 276 QGQL 279 (305)
T ss_pred CccE
Confidence 4443
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.8e-05 Score=83.65 Aligned_cols=186 Identities=16% Similarity=0.249 Sum_probs=132.9
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.+.+.|++++ +++|+-|+.+|.|++.+... .+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~ 70 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP 70 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence 4568888886 56999999999999998764 22
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID-----DNYFISGSIDGKVR 353 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~-----~~~l~s~s~dg~i~ 353 (645)
.+...|+.. ..+| +++|||.||+|.|-.+.+.+....+....++.+++++| + .+.+++|+.-| +.
T Consensus 71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EE
Confidence 222334433 3346 99999999999999999999988899899999999999 5 46799999888 88
Q ss_pred EEeCC---CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 354 IWGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 354 vwd~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
++.-+ ....+......++|.+++|. |+++|-++.+| |++||......... +............-..+.|.++.
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC
Confidence 87643 23334466778899999995 77888887665 79999987765432 22222111222334568888874
Q ss_pred CcEEEEEECCCeEEEEECC
Q 006424 431 SQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~ 449 (645)
.|+.|= ..+|+|..++
T Consensus 218 --~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 --RLVIGW-GDSVKICSIK 233 (846)
T ss_pred --eEEEec-CCeEEEEEEe
Confidence 555554 4467777765
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00017 Score=75.64 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=113.2
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEE--
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI-- 375 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l-- 375 (645)
++.++.++.++.+..+|.++|+.+-.......+.+--.- .+..++.+..++.++.+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 457888889999999999999988877644443322111 2456777788999999999999877543322111000
Q ss_pred EEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCCeEEEEEcC--CCCcEEEEEECCCeEEEEECCc
Q 006424 376 CYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 376 ~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~s~--~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
.-+| .+..+++++.+|.+..+|..+++.... .......... ......+..+| .+ ..+++++.+|.+..+|..+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence 0112 234577788899999999887765322 1111100000 00001111112 12 3677778899999999876
Q ss_pred ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
.....+... .....+. ..+..|+.++.+|.++.+|..+++..
T Consensus 276 G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 276 GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 544444321 1111222 24667888888999999999887543
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00014 Score=77.73 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=130.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.|+| |++.+..++.|+.+|.|.+.+-. .+.++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~ 58 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR 58 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence 4555 56788899999999998887643 23345
Q ss_pred eeccCccC-eEEEEEcCC-CeEEEEeCCCc-----EEEEecCC------CeEE---EEec-----CCCcEEEEEEeeCCC
Q 006424 282 ELHGHKGD-VLDLAWSNS-NYLLSCSMDKT-----VRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD 340 (645)
Q Consensus 282 ~l~~h~~~-V~~l~~s~~-~~l~s~s~dg~-----I~iwd~~~------~~~~---~~~~-----~~~~v~~l~~~p~~~ 340 (645)
.++.+... |..+....+ ++|++.+.|+. +++||++. .+++ ..+. .+.++.+++.+. +-
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l 137 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL 137 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence 66666666 444443344 37888777754 89999853 2344 2222 345788999998 78
Q ss_pred CEEEEEeCCCcEEEEeC---C--CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424 341 NYFISGSIDGKVRIWGV---C--EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~---~--~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
+.+|+|-.+|.|.++.- + ..+.......+++|+.+.+..+++.++-......|.+|.+.+..........
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~----- 212 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN----- 212 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc-----
Confidence 89999999999999942 1 2233334566789999999999987555555678999999866522222222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
++....|..+++.- ..+++++ +..+.+||....
T Consensus 213 -~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 213 -NGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred -CCccceeeecCCCC-ccEEEec-CceEEEEcCCCc
Confidence 35788999998874 3243333 456899986643
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=8.1e-06 Score=87.18 Aligned_cols=150 Identities=13% Similarity=0.196 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC 358 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~ 358 (645)
.|+-+..+ +..+++|...|+|.+-|.++.+.++++. |.+.|..+.. .|+.|++++. |.-|+|||+|
T Consensus 179 ~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence 45555542 3478899999999999999999999996 9999988777 6899999885 5668999999
Q ss_pred CCcEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 359 EKRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 359 ~~~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
..+.+.-........-+.|+|. ...+++.+..|...+-|..+..-+.. ...+.. .+..+..+.+++++ ..++.
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p----~~s~i~~fDiSsn~-~alaf 329 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP----NGSGISAFDISSNG-DALAF 329 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc----CCCcceeEEecCCC-ceEEE
Confidence 9887765554444566778884 45788899999999999433222211 111111 13559999999997 89999
Q ss_pred EECCCeEEEEE
Q 006424 437 TSEDSKLRILD 447 (645)
Q Consensus 437 ~s~dg~I~iwd 447 (645)
|..+|.|.+|.
T Consensus 330 gd~~g~v~~wa 340 (1118)
T KOG1275|consen 330 GDHEGHVNLWA 340 (1118)
T ss_pred ecccCcEeeec
Confidence 99999999997
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.34 E-value=5.8e-06 Score=88.24 Aligned_cols=162 Identities=16% Similarity=0.266 Sum_probs=125.0
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+....+...-..+.|+-|+. ++++|.+|...|+|.+-|..+
T Consensus 166 ~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s------------------------------------- 206 (1118)
T KOG1275|consen 166 TEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS------------------------------------- 206 (1118)
T ss_pred cceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-------------------------------------
Confidence 33333333333444666665 678999999999999999887
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeC---------CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID 339 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~ 339 (645)
.+.++++..|++.|.++... ++.|++||. |.-|+|||++..+.+.-++......-+.|+|.-
T Consensus 207 --------~~~iht~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl 277 (1118)
T KOG1275|consen 207 --------FETIHTFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL 277 (1118)
T ss_pred --------Cceeeeeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc
Confidence 56789999999999988764 358888876 456899999988887777655555778899966
Q ss_pred CCEEEEEeCCCcEEEEe---CCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424 340 DNYFISGSIDGKVRIWG---VCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd---~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~ 398 (645)
...+++++..|...+-| +... ...........+.+++++++|+.++.|..+|.|.+|.-
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77899999999999999 3333 23334455666999999999999999999999999973
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=82.15 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=116.4
Q ss_pred EEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-----cEEEe
Q 006424 293 LAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDW 365 (645)
Q Consensus 293 l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~ 365 (645)
++|+-+ ++-++.+.+..|-+-|+++|.. +.|...+.|.++.|.- .+++++.|..+|.|..+|++.+ .+...
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 366633 4457788888999999987754 4455778899999998 8899999999999999999874 45567
Q ss_pred eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 366 ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 366 ~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
.-|.+.|+++..-. ++++|++.+.+|+|.+||++..+.......+.+|...+. -.-+...+.+ ..+++++.|...+
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~l~~~v~~ee-g~I~s~GdDcytR 371 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--YLPAHVKEEE-GSIFSVGDDCYTR 371 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--cccccccccc-ceEEEccCeeEEE
Confidence 78999999998777 788999999999999999997766444444555432221 1122344554 5888899999999
Q ss_pred EEECCc
Q 006424 445 ILDGVD 450 (645)
Q Consensus 445 iwd~~~ 450 (645)
||.+..
T Consensus 372 iWsl~~ 377 (425)
T KOG2695|consen 372 IWSLDS 377 (425)
T ss_pred EEeccc
Confidence 999874
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00013 Score=80.77 Aligned_cols=197 Identities=13% Similarity=0.188 Sum_probs=128.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
+.|.++.|..++.-++.+..+|.|.+-|..+.. +
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----------------------------------------------~ 102 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE----------------------------------------------L 102 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc----------------------------------------------e
Confidence 679999999999999999999999998876532 2
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec----CCCeEE-------------------EEec-----------
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD----------- 325 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~----~~~~~~-------------------~~~~----------- 325 (645)
.....-...|.+++|+||. .++..+.++++.+-+- -..+.+ ..|.
T Consensus 103 eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~ 182 (1265)
T KOG1920|consen 103 EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQK 182 (1265)
T ss_pred eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccc
Confidence 2223346789999999997 6777777777766432 111111 0110
Q ss_pred -----------CCCcEEEEEEeeCCCCEEEEEe----CC-CcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEe
Q 006424 326 -----------HHNYVTCVQFNPIDDNYFISGS----ID-GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 326 -----------~~~~v~~l~~~p~~~~~l~s~s----~d-g~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~ 388 (645)
..+.=+.+.|-- ||.++++.. .+ +.|++||.+ +.+-. -....+.-.+++|-|.|..+++-.
T Consensus 183 ~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 183 IEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred ccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeee
Confidence 011123478887 898988833 23 789999987 44332 222334456899999999888753
Q ss_pred ---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE---EECCCeEEEEECCc
Q 006424 389 ---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVD 450 (645)
Q Consensus 389 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~---~s~dg~I~iwd~~~ 450 (645)
.|+.|.+|.-++-....-.+..+. ....+..++|+.++ ..|++ ......|++|-..+
T Consensus 261 ~~~sd~~IvffErNGL~hg~f~l~~p~----de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 261 CKTSDSDIVFFERNGLRHGEFVLPFPL----DEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ecCCCCcEEEEecCCccccccccCCcc----cccchheeeecCCC-CceeeeecccccceEEEEEecC
Confidence 456788988765543221121211 22448999999996 67777 44455699998764
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=1.6e-06 Score=57.08 Aligned_cols=36 Identities=33% Similarity=0.722 Sum_probs=33.6
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 314 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd 314 (645)
++..+.+|.+.|++++|+|++ +|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999986 999999999999997
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8.5e-05 Score=72.50 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=73.2
Q ss_pred CCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
+..+-+.+|...|.+++|+|. |.+..++.+.+|+|.|+++..++..+.....+++++|.-++.++++.|..+|.|.+|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 334566788899999999986 478899999999999999999999998779999999998677889999999999999
Q ss_pred eCCCCc
Q 006424 356 GVCEKR 361 (645)
Q Consensus 356 d~~~~~ 361 (645)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998643
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=8.8e-06 Score=85.95 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=109.3
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 326 ~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
....++|++++ +.+|+.|+.+|.|++++..... .....|... ..+|.++++++.||++.+..+-+.+..
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~- 106 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI- 106 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc-
Confidence 34567788884 6899999999999999987654 333334332 568999999999999999888766542
Q ss_pred eEEeeccccccCCCCeEEEEEcCC----CCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~~----g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
....++ .++.+++++|+ .+..+++|+.-| +.++.-+ ........+...++|.++.| .|+++|=+
T Consensus 107 ~~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 107 TQYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred eeEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence 233333 57899999998 346799999988 8887633 22223345567899999999 57888887
Q ss_pred eCCccEEEEeCCCCCc
Q 006424 480 GDDCRVYVWNYDELCF 495 (645)
Q Consensus 480 s~dg~I~iwd~~~~~~ 495 (645)
+++| |+|||+...+.
T Consensus 177 nd~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQR 191 (846)
T ss_pred cCCC-cEEEeccccce
Confidence 7665 89999988763
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.23 E-value=0.0022 Score=62.29 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=129.4
Q ss_pred EEEEEcCCC--eEEEEeCCCc-EEEEecCCCeEEEEecCCC---cEEEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC
Q 006424 291 LDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVCE 359 (645)
Q Consensus 291 ~~l~~s~~~--~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~---~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~ 359 (645)
..++.+|.. .++.+-.-|+ ..+||..+++....+.... .--.-.|++ ++++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 355667743 5556666554 6789999998887764211 122457999 9999988654 47899999983
Q ss_pred --CcEEEeeccCCCeEEEEEccCCCEEEEEec------------------CCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 360 --KRVVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 360 --~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
.++-++..+.-....+.+.|||+.|+++.. +.++.+.|..++...- +..+. ...|..
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp--~~~~~l 163 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELP--PDLHQL 163 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecC--cccccc
Confidence 234457777777888999999988887631 2244555555555422 22221 012346
Q ss_pred CeEEEEEcCCCCcEEEEEECCC-------eEEEEECCcceeeEee-----cCCCCCeEEEEEecCCCEEEEEe-CCccEE
Q 006424 420 KITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVY 486 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg-------~I~iwd~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~ 486 (645)
.|..+++.++| ..++..-..| .|.+++.......+.. ..-.+.+-+|++++++.++++++ ..+++.
T Consensus 164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 78999999997 3333332222 3455554443333332 12356899999999998886665 578999
Q ss_pred EEeCCCCCcCC
Q 006424 487 VWNYDELCFPS 497 (645)
Q Consensus 487 iwd~~~~~~~~ 497 (645)
+||..++....
T Consensus 243 ~~d~~tg~~~~ 253 (305)
T PF07433_consen 243 VWDAATGRLLG 253 (305)
T ss_pred EEECCCCCEee
Confidence 99999885433
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.00031 Score=72.67 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=84.9
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEe----CCCc----EEEEeCCCCcEE----EeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424 325 DHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGT 392 (645)
Q Consensus 325 ~~~~~v~~l~~~p~~~~~l~s~s----~dg~----i~vwd~~~~~~~----~~~~~~~~v~~l~~sp~g~~l~~g~~dg~ 392 (645)
.......++.|+-.+++.+.+.. .+|. -.+|+...+++. .....+..+.+++++|+...++.|+.||.
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 34445577788875666665543 2343 456776655433 24567889999999999999999999999
Q ss_pred EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
|.+||........... .-..+.++|+|+| ..+++|+..|.+.+||..
T Consensus 283 iiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 283 IILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence 9999987664332211 1457889999998 899999999999999965
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=1.8e-06 Score=91.41 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=135.1
Q ss_pred CCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC--cE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KV 352 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg--~i 352 (645)
.+..+.++.|....+|++|+-+ +.|+.|+..|.|+++++.+|....... |.+.|+.+.-+. ++..+++.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchH
Confidence 3456778889999999999976 499999999999999999998887775 999999998887 787766655433 46
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
.+|++.+ .......-..-.++.|+.....-++|+......+||+.+.......+.-.. .....-++..|+|+. .
T Consensus 1170 aLW~~~s--~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---TSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred HHhcccc--ccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch---hhhhhccccccCCCc-c
Confidence 7999865 111111122345778887766677788888899999998765433111110 011223678899986 4
Q ss_pred EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+++ .|| .+||.+.............. ..-.|+|.|.-++.-++ |||+++-.
T Consensus 1244 LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred eEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHH
Confidence 444 233 47997743222211111111 23368999999998775 89998764
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.0028 Score=67.39 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=112.3
Q ss_pred EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEeCCCCcEEEeeccCCCeEEEEEc
Q 006424 303 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYI 378 (645)
Q Consensus 303 s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~v~~l~~s 378 (645)
+.-..+.+.+.|.++.+....+........++++| ++.++++.+.+. ++..-+.............. + -.+.
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-i--ea~v 285 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-I--EEAV 285 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHH-H--HHhh
Confidence 34445678888888888877776666667889999 888888776322 23333332211111111100 0 0234
Q ss_pred cCCCEEEEEecCCeEEEEEecC----CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424 379 PDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 454 (645)
Q Consensus 379 p~g~~l~~g~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~ 454 (645)
++|++..+ .++.|.+.|..+ .......+... .....+.++|||...++++..+.+|.|.|+.+....
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 57887776 367899999887 22223333322 456789999999656666667999999998754321
Q ss_pred E----------ee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 455 F----------KG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 455 ~----------~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
+ .. ..-.......+|+++|+...|---|..|..||+..
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 11 11122345678999998888888899999999976
No 320
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.0011 Score=68.46 Aligned_cols=265 Identities=17% Similarity=0.181 Sum_probs=136.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-eEecCC-----CCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDD-----GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
.|+++.|+++..-|+.|...|.|.||.....+... ....+. ..+......+.+.-...... ..+ ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~-------~~~-~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP-------PSL-KE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC-------ccc-cc
Confidence 48999999999999999999999999887633221 000000 00001111111111111000 000 00
Q ss_pred cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---------CCCcEEEEEEee----CCC--
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD-- 340 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---------~~~~v~~l~~~p----~~~-- 340 (645)
.-.+...+....++|++++.|+=|+++.|..+|.+.|.|++....+..-. ....++++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 12344555666899999999877999999999999999998887776532 234688888863 122
Q ss_pred -CEEEEEeCCCcEEEEeCC--C-Cc-EE---Ee-eccCCCeEEEE-EccCC--------------------CEEEEEecC
Q 006424 341 -NYFISGSIDGKVRIWGVC--E-KR-VV---DW-ADVRDVISAIC-YIPDG--------------------KGFIVGSIT 390 (645)
Q Consensus 341 -~~l~s~s~dg~i~vwd~~--~-~~-~~---~~-~~~~~~v~~l~-~sp~g--------------------~~l~~g~~d 390 (645)
-.+++|...|.+.+|.+. . +. .. .. ..+.+.+..+. ++.+. ..+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 368899999999999874 2 21 11 12 24556666555 32211 235555667
Q ss_pred CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc----CCCCcEEEEEECCCeEEEEECCcceeeEeecC----CCC
Q 006424 391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----KSG 462 (645)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s----~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----~~~ 462 (645)
..++++...+.+...+.+ .. ......+.+- ..+...|++-..+|.|++|.+-.........- ...
T Consensus 235 ~~irv~~~~~~k~~~K~~--~~-----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF--DD-----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp SEEEEE-TT---EEEEE---SS------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred cceEEEeCCCCcccceee--cc-----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 889999887766544333 11 0122333442 12236888899999999999875444333321 112
Q ss_pred CeEEEEEecCCCEEEEEeC
Q 006424 463 SQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 463 ~i~~v~~sp~~~~l~t~s~ 481 (645)
.+...+++++|..++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 3345667888887666543
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.08 E-value=0.0023 Score=61.86 Aligned_cols=184 Identities=16% Similarity=0.061 Sum_probs=111.1
Q ss_pred CCcEEEEecCCCeEEEEecCCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE
Q 006424 307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 384 (645)
Q Consensus 307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l 384 (645)
+|+|..||..+|+.+............. ..+ +++.+++++.++.|+.||..+++.+-.......+...- ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6899999999999988886422122222 222 56778888899999999999998776444443332222 2355677
Q ss_pred EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC-
Q 006424 385 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS- 463 (645)
Q Consensus 385 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~- 463 (645)
++++.++.+..+|..+++........... ...........+. + ..++++..++.|..+|..+.............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 77888899999998888765442221110 0000111222222 4 57888888999999998865554443222211
Q ss_pred ---------eEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 464 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 464 ---------i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
+..-....++ .++.++.+|.+.-+|+.+++..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 1122222244 77777778864444999886333
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.00076 Score=70.45 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=121.2
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
...-....+.++|+|++++. +.||...|+.....
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------------------------------------------- 63 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------------------------------------------- 63 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---------------------------------------------
Confidence 34445789999999999888 55677777763321
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
+. ...+.-...+|.+.+.+++-...++|.++.--+......+..+..+..+-. |.+|+..+. +.|.+||+
T Consensus 64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 11 113445667898888888888889999963222333234443333444422 677777664 48999999
Q ss_pred CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC--------ce--eeeEEeeccccccCCCCeEEEEEc
Q 006424 358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--------DL--KLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~--------~~--~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
.+++.+....... |..+.|+++|.+++..+.+ .+.+++.... .. .... .+. ....|.+..|.
T Consensus 134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~--~~E----~~~~IkSg~W~ 205 (443)
T PF04053_consen 134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFEL--IHE----ISERIKSGCWV 205 (443)
T ss_dssp TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEE--EEE----E-S--SEEEEE
T ss_pred hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEE--EEE----ecceeEEEEEE
Confidence 9999988777654 8999999999999998855 6677665433 00 0111 111 02578888898
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+ -++.+... .++.+-..+ ...+.. -..++.=+.+.|..+.+.....|+.|..+.++..
T Consensus 206 ~d--~fiYtT~~--~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 206 ED--CFIYTTSN--HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TT--EEEEE-TT--EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred cC--EEEEEcCC--eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 76 34444443 676644322 222222 2335566667777788888888889988887653
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00079 Score=70.10 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=118.2
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEE--eCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSC--SMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG 350 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~--s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg 350 (645)
+...+.+..-...+..-+|+|++ .++.. ... ..+.++|+++++..........-...+|+| +++.++.+ ..||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCC
Confidence 33344444445567777888886 32222 222 359999999888777666566666778999 77765544 4555
Q ss_pred c--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 351 K--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 351 ~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
. |+++|+.++....+....+.-..-.|+|||+.++-.+. .| .|.+++..+... ..+..... .-..-.
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~------~~~~p~ 332 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGG------GNSNPV 332 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCC------CCcCcc
Confidence 4 77778888876665555555557789999998877654 44 455566665544 33333321 122678
Q ss_pred EcCCCCcEEEEEECCCe--EEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 426 FSRDESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
|+|+|..+++....+|. |.+.|...... ............-+|.+++..+...+..
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 99999544444534455 45555432221 2222233344456778888877765543
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.06 E-value=0.00024 Score=78.80 Aligned_cols=244 Identities=12% Similarity=0.106 Sum_probs=139.4
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
...|.++.|.- +.+.++.+..+|.|.+-|..+............|.+++|+||+..++..+.++++.+.+-. ......
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAE 145 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhc
Confidence 35799999998 8888899999999999999888887777888899999999999999999988888765432 111110
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-----C
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-----D 481 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-----~ 481 (645)
..+... ....+....+-|-... .=+-| ..|...-.+............-...-++++|--||+++|+.. .
T Consensus 146 -~~L~~d-~~~~sk~v~VGwGrke--Tqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 146 -KPLDAD-DERKSKFVNVGWGRKE--TQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred -cccccc-cccccccceecccccc--eeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 001000 0001222233333221 01111 111111111110001011011222335789999999999843 3
Q ss_pred CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC-----ccCCCC
Q 006424 482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-----WIRDSE 556 (645)
Q Consensus 482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~ 556 (645)
...|+|||-+ +....... ...+.-.+++|-|.|..+++....+....+.+.....-.+ ..+...
T Consensus 221 ~RkirV~drE-g~Lns~se----------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSE----------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred ceeEEEeccc-chhhcccC----------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 3899999987 32211110 1133345677777777777665544444333333322111 122223
Q ss_pred ccccCccccCCCCCCcC---CCCCCCcCCCCCCccC
Q 006424 557 RFSLGSWFSNDGPCRGS---ATWPAEKLPLWDVTID 589 (645)
Q Consensus 557 ~~~~~~~fs~dg~~l~s---~s~~d~~i~iWd~~~~ 589 (645)
..+..++|+.++..|+. ... ...|.+|-+.+.
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTGNY 324 (1265)
T ss_pred cchheeeecCCCCceeeeecccc-cceEEEEEecCe
Confidence 34788999999998876 333 445899976544
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00035 Score=74.33 Aligned_cols=235 Identities=14% Similarity=0.175 Sum_probs=132.0
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEE--
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV-- 363 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~-- 363 (645)
.+++++|+|.. .|+.|-.-|.+.+|...+.+.-... .|+.+|..+.|+| +|+.++++..-|.|.+|.... +++.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccc
Confidence 35669999987 6778888899999998766554443 4999999999999 999999999999999997652 1110
Q ss_pred ----------------Eee---------------ccCCCeE------------EE--EEccCCCEEEEEecCCeEEEEEe
Q 006424 364 ----------------DWA---------------DVRDVIS------------AI--CYIPDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 364 ----------------~~~---------------~~~~~v~------------~l--~~sp~g~~l~~g~~dg~i~iwd~ 398 (645)
++. +....+- ++ .=.|+|..++.++.+|+|+..|-
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq 219 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ 219 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC
Confidence 000 0000000 00 11356778888889999888876
Q ss_pred cCCceeeeEEeec--cccccCCCCeEEEE-EcCCCCcEEE------------------EEECCCeEEEEECC---cceee
Q 006424 399 SGNDLKLEKVDFH--DRKKTSGNKITGIQ-FSRDESQRIM------------------ITSEDSKLRILDGV---DVIHK 454 (645)
Q Consensus 399 ~~~~~~~~~~~~~--~~~~~~~~~i~~i~-~s~~g~~~l~------------------~~s~dg~I~iwd~~---~~~~~ 454 (645)
.+....+...... -........|.++. +..+ .++. .|+..|.|.+=... .....
T Consensus 220 ~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~--~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK 297 (1416)
T KOG3617|consen 220 NGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRD--CLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK 297 (1416)
T ss_pred CCcEEEEEEccchHHHHHhcccceEEEEeeecee--eEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc
Confidence 5544333211100 00000112222221 1111 0000 11111222111111 00111
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC-CCCcCCCcccCCcceeee-eecCCcEEEEecCCCCcccc
Q 006424 455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~ 529 (645)
.+......+++++++..+..|..|...|.+.+|.-. .+-.... ......... -...|.+..+.|.|-...++
T Consensus 298 -yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p--~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 298 -YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDP--TIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred -hhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCC--CcceEEecCchhhccceEEEEeccccchhh
Confidence 122345679999999999999999999999999533 3211111 111111111 12357788899988666555
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=0.00047 Score=71.31 Aligned_cols=74 Identities=8% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
...+.+++++|+. ..++.|+.||.|.+||.......+.. ..-..+.++|+|+|..+++|++.|.+.+||+.-..
T Consensus 259 ~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 259 PSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 3789999999997 89999999999999998765555443 44567899999999999999999999999987543
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.04 E-value=0.0024 Score=66.87 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=107.3
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCc--------EEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 369 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------v~~l~~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 369 (645)
+.++.++.+|.+...|..+|+.+..+....+ ...+.-+| ..++.++.++.+|.+..+|..+++..-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 5677788899999999998887655431110 00111111 02456777778999999999998866433322
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
. ...+. ..+..+++++.+|.+..+|..++........... ....+.... + ..++.++.+|.+...|..
T Consensus 286 ~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 286 S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINRE 353 (394)
T ss_pred C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEECC
Confidence 2 11122 2566788888999999999987764322111111 111222222 3 478889999999999977
Q ss_pred cceeeEeecCCCCCeEE-EEEecCCCEEEEEeCCccEEEEeC
Q 006424 450 DVIHKFKGLPKSGSQMS-ASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 450 ~~~~~~~~~~~~~~i~~-v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
+.....+.......+.+ ..+ .+..|+.++.||.++.++.
T Consensus 354 tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 65444333222222222 122 3557888899999998764
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.2e-05 Score=72.29 Aligned_cols=131 Identities=9% Similarity=-0.015 Sum_probs=87.4
Q ss_pred EEEEeCCCCcEE-EeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
+++.+..+-+.. ....+...|..++|+|..+ ++..++.+..|++.|+++....... .. ...+.+++|.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a-----~~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IA-----YNQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ec-----cCCceeeeeccC
Confidence 455544332222 3456677899999999777 6888999999999999987654321 11 267899999999
Q ss_pred CCcEEEEEECCCeEEEEECCcce---eeEeecCCCCCeEEEEE------ecCCCEEEEEeCCccEEEEeCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVI---HKFKGLPKSGSQMSASF------TTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~---~~~~~~~~~~~i~~v~~------sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
...++++|...|.|.|||++... ..+.......+|..++. .+.|.+|+..+.+ ...|++..
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF 316 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence 88899999999999999988432 23333223445554432 3345556555543 55666653
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.01 E-value=2.7e-06 Score=87.44 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=131.2
Q ss_pred ccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCeEE---EEecCCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEe
Q 006424 287 KGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCL---NVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG 356 (645)
Q Consensus 287 ~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd 356 (645)
...+.|+++..+ . .++.|..+|.|-+-.++...-. .+-++...+++++|++.|.+.||.|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445777777643 2 6888999999999887644322 22357788999999998788888874 356799999
Q ss_pred CCCCcEE-----Eee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 357 VCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 357 ~~~~~~~-----~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+.++-.. .+. +......++||..+.+.+.+|.....++++|++........+. ...+..+...|-.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFS 207 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCC
Confidence 9876211 122 2445567899998999999999999999999984433222111 1345667777733
Q ss_pred CcEEEEEECCCeEEEEEC-CcceeeEeecCC-----CCCeEEEEEecCCC-EEEEEe-CCccEEEEeCCCC
Q 006424 431 SQRIMITSEDSKLRILDG-VDVIHKFKGLPK-----SGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~-----~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~~~~ 493 (645)
..++++.. ||.|.+||. ++....+....+ ...+..++|+|... .+++.+ +.++|+++|+..-
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 35665555 999999993 322222211111 22488999999643 445554 4589999998643
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0059 Score=62.84 Aligned_cols=231 Identities=13% Similarity=0.129 Sum_probs=120.6
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-C-----------------CCcEEEEEEeeCCCCEEEEEeC
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~-----------------~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
...+....|+|+|..++--.++.|.+++..++...+... . -+.-..+-|+| ++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence 567888999999844444456889999988775543321 1 11235678999 8888776543
Q ss_pred C-Cc-----------------------------------EEEEeCCCCcEEEe------eccCCCeEEEEEccCCCEEEE
Q 006424 349 D-GK-----------------------------------VRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV 386 (645)
Q Consensus 349 d-g~-----------------------------------i~vwd~~~~~~~~~------~~~~~~v~~l~~sp~g~~l~~ 386 (645)
| .. +.|+|+.+++...+ ......+..+.|.++++.+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 22 23334444332111 123345778899999884444
Q ss_pred Ee--cCC---eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEE--EECCcceeeEeec
Q 006424 387 GS--ITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRI--LDGVDVIHKFKGL 458 (645)
Q Consensus 387 g~--~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~i--wd~~~~~~~~~~~ 458 (645)
.- .+. .+.++|..++............ --..-....|. +++..++.....||.-+| ++....... ...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~---Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDG---WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSS---SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCc---ceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence 32 222 4667777665544332111111 11222345554 676678888888875444 454433322 222
Q ss_pred CCCCCeEE-EEEecCCCEEE-EEeCC----ccEEEEeCC-CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424 459 PKSGSQMS-ASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 531 (645)
Q Consensus 459 ~~~~~i~~-v~~sp~~~~l~-t~s~d----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~ 531 (645)
...-.|.. +.++++++.|+ ++..+ ..++.-+++ .+......... +....+.++|++.+++..
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-----------~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-----------GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-----------STTEEEEE-TTSSEEEEE
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-----------CCceEEEECCCCCEEEEE
Confidence 23445644 67888877665 44432 245555665 33221111111 111466677777776644
Q ss_pred CC
Q 006424 532 CS 533 (645)
Q Consensus 532 ~~ 533 (645)
++
T Consensus 346 ~s 347 (353)
T PF00930_consen 346 YS 347 (353)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=4.8e-06 Score=85.59 Aligned_cols=202 Identities=15% Similarity=0.211 Sum_probs=133.7
Q ss_pred CcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 201 GCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 201 ~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
..+.|++++-+ ...++.|..+|.|-+-.+.... ..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------------------------------dS 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------------------------------DS 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------------------------------cc
Confidence 35777776543 3589999999999998776521 11
Q ss_pred CceeeccCccCeEEEEEcCC--CeEEEE----eCCCcEEEEecCCC--eEEEE--e--cCCCcEEEEEEeeCCCCEEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNS--NYLLSC----SMDKTVRMWQVGCN--QCLNV--F--DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~--~~l~s~----s~dg~I~iwd~~~~--~~~~~--~--~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.-....+|....++++|++- +.|++| -.|..+.|||+.++ .+... | +.......++|.. +.+++.+|
T Consensus 94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaG 172 (783)
T KOG1008|consen 94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAG 172 (783)
T ss_pred cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcc
Confidence 12344578889999999974 366665 23568999999876 22211 1 1334566888886 88899999
Q ss_pred eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEE-ecCCceeeeEEeeccccccCCCCeEEE
Q 006424 347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYK-ASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
.....++++|++........-....+..+...| .+++++.-. ||.|.+|| .+.-+.+...+ .+. .......+..+
T Consensus 173 m~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~~ 249 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFAL 249 (783)
T ss_pred cccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH-hhC-CCCcccceeeE
Confidence 999999999998543322222233566777888 677777655 99999999 44333222211 111 11122468999
Q ss_pred EEcCCCCcEEEEEECC-CeEEEEECC
Q 006424 425 QFSRDESQRIMITSED-SKLRILDGV 449 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~d-g~I~iwd~~ 449 (645)
+|+|.....+++...| ++|+.+|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EeccCCcchhhhhccCcceEEEeccc
Confidence 9999755577777766 789999854
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=0.015 Score=54.06 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=80.5
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCe-EEEEEc
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI 378 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v-~~l~~s 378 (645)
+++.|+..+.+.--|..+|..+........+.+-+.- -+++++.|...|.+++.+..++........-+.| ......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 7888999999999999999887776666666665554 4778999999999999999999654432222222 234456
Q ss_pred cCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 379 PDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 379 p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
+++..+.+|+.|++.+..|.++.....+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 7899999999999999999988776443
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0015 Score=70.09 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=122.3
Q ss_pred CeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCc-EEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCC
Q 006424 289 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK 360 (645)
Q Consensus 289 ~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~-v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~ 360 (645)
.|.|+ +++ +.++.|+.+|.|.+.+-. -+.+..+. +... |..+.... ..++|++.+.|+ .+++||+..-
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEeccccc
Confidence 44443 444 589999999999888743 23334443 3334 44444433 446888877765 4899998542
Q ss_pred ------cEE---Eeec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee--eeEEeeccccccCCCCeEEE
Q 006424 361 ------RVV---DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 361 ------~~~---~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i 424 (645)
.+. .... ...++.+++.+.+-+.+|+|-.+|.|..+.-.-.+-. .......+ ..+|+.+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-----~~pITgL 177 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-----KEPITGL 177 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----CCCceee
Confidence 233 2222 3567889999999999999999999998854311111 11222222 4899999
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+..++...+++++ -..|.+|.+........ ...+.....|..+++....+++++ +..+.+|+.+..
T Consensus 178 ~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 178 ALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred EEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 99999854333333 34688887663222222 344677888888887666455554 457999998754
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00013 Score=77.53 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=58.2
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
+++++|+|..-.|+.|-.-|.+.+|...+. +.-..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------------------------------------------e~htv 96 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------------------------------------------ETHTV 96 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---------------------------------------------eeeee
Confidence 567999999989999999999999987752 22233
Q ss_pred eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC
Q 006424 283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG 316 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~ 316 (645)
...|+.+|..+.||++| .++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45699999999999998 89999999999999865
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0083 Score=57.46 Aligned_cols=205 Identities=13% Similarity=0.204 Sum_probs=116.3
Q ss_pred eeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 281 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
+.+.+-...+..++|+|+ + .++.....+.|...+. +|+.+..+. ..+..-.+++.. ++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 455666777999999997 4 5556666788888886 478887775 335678888875 555555544588999998
Q ss_pred CCCC--c--E---EE----ee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC--CceeeeEEeeccc--cccCCCC
Q 006424 357 VCEK--R--V---VD----WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDR--KKTSGNK 420 (645)
Q Consensus 357 ~~~~--~--~---~~----~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~--~~~~~~~ 420 (645)
+... . . .. +. .++..+-.++|+|.++.|+++-...-..+|.+.. ............. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 8331 1 1 11 11 2445689999999988888888877777888765 2111111111110 1122345
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecC-------CCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~-------~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
+.+++++|....+++.+..+..|.++|... ....+.... .-...-+|+|+++|++.++ ++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 788999998667888888889999999552 233333321 1124678999999865555 456655554
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0063 Score=62.82 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=116.2
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE-------------------------------------------EEe
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-------------------------------------------NVF 324 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~-------------------------------------------~~~ 324 (645)
.|+.+.|.++. .|+.|...|.|.+|.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888888874 8999999999999865322111 001
Q ss_pred c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---------cCCCeEEEEEcc-----CC---CEEEE
Q 006424 325 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIP-----DG---KGFIV 386 (645)
Q Consensus 325 ~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~v~~l~~sp-----~g---~~l~~ 386 (645)
. ..++|++++.+ +=.+++.|..+|.+.|.|+|+..++.... ....++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 34678999987 56799999999999999999988776422 233678888863 33 47889
Q ss_pred EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE-EcCC-C------------------CcEEEEEECCCeEEEE
Q 006424 387 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRD-E------------------SQRIMITSEDSKLRIL 446 (645)
Q Consensus 387 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~s~~-g------------------~~~l~~~s~dg~I~iw 446 (645)
|+..|.+.+|.+--.........+......+.+++..+. ++.+ | -.-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999987521111111111111122335555554 3221 1 0124555557789999
Q ss_pred ECCcceeeEeecCCCCCeEEEEE-----ecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASF-----TTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~-----sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
...+.....+..........+.+ ...+..|++-..+|.|+++.+...+.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 87654444443322222333444 23567788888999999999988753
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.88 E-value=0.0058 Score=62.07 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=103.9
Q ss_pred CcEEEEecCCC-----eE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEEeeccCCCeEEEEEcc
Q 006424 308 KTVRMWQVGCN-----QC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP 379 (645)
Q Consensus 308 g~I~iwd~~~~-----~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~v~~l~~sp 379 (645)
|.|.++++... +. +......++|++++-. .+. ++++. ++.|++|++...+ +.....+...+...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999874 22 2333578889998876 344 44444 4889999998877 666444444334444445
Q ss_pred CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---------
Q 006424 380 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------- 450 (645)
Q Consensus 380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------- 450 (645)
.++++++|+....+.++..+........+.-.. ....++++.|-+++ ..++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~----~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDY----QPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES----S-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecC----CCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence 577999999999999887765333232222111 13568899998776 5999999999999987431
Q ss_pred -ceeeEeecCCCCCeEEE---EEec--CCC------EEEEEeCCccEEE
Q 006424 451 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYV 487 (645)
Q Consensus 451 -~~~~~~~~~~~~~i~~v---~~sp--~~~------~l~t~s~dg~I~i 487 (645)
.............|+++ ++.| .+. .++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 12222222234566666 4444 122 3677777887773
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.026 Score=57.33 Aligned_cols=200 Identities=15% Similarity=0.254 Sum_probs=120.8
Q ss_pred CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCC------CCEEEEEeC----------CCcEEEEeCCCC-----cEE-
Q 006424 308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI----------DGKVRIWGVCEK-----RVV- 363 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~------~~~l~s~s~----------dg~i~vwd~~~~-----~~~- 363 (645)
..|++.|..+.+.+..+. ....+.+++..... ..++++|+. .|.|.++++... ++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358888888887776664 44456655443212 457777653 288999999884 332
Q ss_pred -EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc-eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424 364 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441 (645)
Q Consensus 364 -~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg 441 (645)
.....+++|++++-- ++ +++++ .++.|.+|++.... .... ..... ...++++.... .++++|....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~---~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFK---NYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEET---TEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEeccc---cEEEEEEccc
Confidence 345568889998865 34 44444 46899999999887 3222 21222 24677776664 4888998888
Q ss_pred eEEEEECC--c-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEE
Q 006424 442 KLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 518 (645)
Q Consensus 442 ~I~iwd~~--~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 518 (645)
.+.++... . ....+........++++.|-++++.++.+..+|.+.++.++..................|+-...++.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 88877433 2 23333333345678899998777899999999999999987432211111102333445665555655
Q ss_pred E
Q 006424 519 V 519 (645)
Q Consensus 519 v 519 (645)
+
T Consensus 230 ~ 230 (321)
T PF03178_consen 230 F 230 (321)
T ss_dssp E
T ss_pred E
Confidence 5
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.80 E-value=0.0092 Score=59.96 Aligned_cols=184 Identities=11% Similarity=0.018 Sum_probs=92.3
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEe----------------------
Q 006424 293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGS---------------------- 347 (645)
Q Consensus 293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s---------------------- 347 (645)
..+++++ .++-...+..|+-.|+++.+....+. ....+-...|... ++..++-.-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 3445554 55555556788888888887666665 3344444556431 344433211
Q ss_pred CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
....|.-.|+.+++...+......+..+.|+|....+++=+..| .-++|-++........+..+. ....+.
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~----~~e~~g 241 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM----EGESVG 241 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC----CCcccc
Confidence 12346667888888888888888999999999665555544433 247787775544333222111 134455
Q ss_pred EEEEcCCCCcEEEEEE-C---CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 423 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s-~---dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
.=-|.|+|..+...+. . +..|.-+|..+....... .......+.-++||++++-=+.|
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence 5668999865555443 2 334555666543322211 11134456667899888754443
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.017 Score=60.43 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=95.2
Q ss_pred cEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---c-----CCCeEEEEEcc
Q 006424 309 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---V-----RDVISAICYIP 379 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~-----~~~v~~l~~sp 379 (645)
.|.+|+.. |+.+..+. ..+.+.++.|.. ...|++...||.+++||+.+.. ....+ . ...+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 58889876 55666654 237899999986 4556667789999999997554 11111 1 11122223333
Q ss_pred CCCEEEEEecCCeEEEEEecCCceeeeEE-eeccccc-cC-CCCeEE-EEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424 380 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK-TS-GNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF 455 (645)
Q Consensus 380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~-~~~i~~-i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~ 455 (645)
+| +++-..++.+.+.+--......... ....... .+ ...... ..++.+. ...+....++.+.+.+......
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc--
Confidence 44 4444555555444322221111110 0111000 00 001111 2344443 4455555566677555332211
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
....+++..|+.||+|++||.-..+|.+.+.+.+-.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 123568999999999999999999999999876544
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0049 Score=64.99 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=94.7
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|...|.--+++..+++++.|+.-|.+.+|+-..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------------------------------------------- 67 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------------------------------------------- 67 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------------------------------------------
Confidence 445566666777889999999999999998765321
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE-----EEe--cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~-----~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
......+-.+.+..+..+++. +++.|+..|.|.++-+..+.+- ... .|...|+|++|++ ++..+++|...|
T Consensus 68 ~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G 146 (726)
T KOG3621|consen 68 RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG 146 (726)
T ss_pred hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence 112222344555666677766 6778888899999987654321 111 2788999999999 999999999999
Q ss_pred cEEEEeCCCC-----cEEEeeccCCCeEEEEEc
Q 006424 351 KVRIWGVCEK-----RVVDWADVRDVISAICYI 378 (645)
Q Consensus 351 ~i~vwd~~~~-----~~~~~~~~~~~v~~l~~s 378 (645)
+|.+-.+... ....+....+.|-.+.+.
T Consensus 147 kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 147 KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9999888762 122344556666666654
No 342
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.74 E-value=0.0019 Score=66.41 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC----------------
Q 006424 306 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR---------------- 369 (645)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------- 369 (645)
..+.+.++|+++++..........+....|+| +++.++... ++.|++++..++...++....
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred cceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 34679999999987766665567789999999 899988886 678999998887665543221
Q ss_pred --CCeEEEEEccCCCEEEEEec
Q 006424 370 --DVISAICYIPDGKGFIVGSI 389 (645)
Q Consensus 370 --~~v~~l~~sp~g~~l~~g~~ 389 (645)
+.-.++-|||||++|+....
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEE
Confidence 22457889999999887643
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.73 E-value=0.003 Score=67.19 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeee-EEe--
Q 006424 339 DDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVD-- 409 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~-~~~-- 409 (645)
++++... .++.|.+.|.++ ...............+.++|||+++++++. ++++.++|+........ .+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 5666655 357899999998 567777788888999999999998887665 88999999987542110 000
Q ss_pred --eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 410 --FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 410 --~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
.... ..-+......+|.++| ..+.+..-|..|..||+..
T Consensus 365 ~~vvae-vevGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAE-PELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEe-eccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 0000 0012334567899997 6788888899999999765
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.001 Score=69.93 Aligned_cols=141 Identities=9% Similarity=0.123 Sum_probs=100.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
...|.--+++. .+++++.|+.-|.+++|+-.++....... ..+.+..++.+++..++|+|+..|.|.++-+.... +
T Consensus 33 ~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p 110 (726)
T KOG3621|consen 33 PARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-P 110 (726)
T ss_pred cceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-C
Confidence 33344444555 78999999999999999988877665444 56667778899999999999999999999988733 3
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceee---EeecCCCCCeEEEEEe
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK---FKGLPKSGSQMSASFT 470 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~---~~~~~~~~~i~~v~~s 470 (645)
.....+......|...|++++|++++ ..+++|...|.|..-.+.. .... .......+.|..+...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 33332333333467899999999998 8999999999998877654 1111 1111235567666653
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.53 E-value=0.0024 Score=70.43 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC-------CCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 339 DDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 339 ~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~-------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
+.++|+.- .....|+-.|+..|+++.--.....+.-..+.|+ ....++|-.+..+..||.+-...... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--DS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee--ec
Confidence 34444443 3457899999999998874333333323344453 33567788899999999986542111 11
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
..+........+|++-+.+| +||+|+.+|.||+||--.....-....-..+|.+|+.+.||++|++.+ +..+.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 22222334678899988887 899999999999999432222222233568999999999999988776 567777775
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.48 E-value=0.082 Score=52.28 Aligned_cols=192 Identities=13% Similarity=0.165 Sum_probs=104.4
Q ss_pred CeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEE---------------EecCCCcEEEEE-EeeCCCCEEEEEeCCCc
Q 006424 289 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK 351 (645)
Q Consensus 289 ~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~---------------~~~~~~~v~~l~-~~p~~~~~l~s~s~dg~ 351 (645)
.|..+...++ +.++.- .|+.+.++++..-.... .+.....+...+ -....+...+.......
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 3888888876 444443 35999999986544333 222333455444 11213334444444568
Q ss_pred EEEEeCCCC-----cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc------cccCCCC
Q 006424 352 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNK 420 (645)
Q Consensus 352 i~vwd~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~ 420 (645)
|.+|..... +...-....+.+.+++|. ++.+++|..+ ...+.|+.+..... ....... ......+
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 191 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKP 191 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCc
Confidence 999887652 334445567889999998 5678888755 46788888554321 1111110 0111233
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECC-ccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
+..+....+ .+|++. |..-.+.|.. ...+ .+.. .....++++ ...||+..+.++ |.||++.+++.
T Consensus 192 ~~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 192 LGIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGEL 259 (275)
T ss_pred eEEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcE
Confidence 444444433 455542 3333333422 1111 2222 234556666 356888877654 99999999854
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.45 E-value=0.071 Score=57.47 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=101.2
Q ss_pred CCCcEEEEecCCCeEEEEecCC-C--------------------cE-EEEEEeeCCCCEEEEEeCCC-------------
Q 006424 306 MDKTVRMWQVGCNQCLNVFDHH-N--------------------YV-TCVQFNPIDDNYFISGSIDG------------- 350 (645)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~~~~~-~--------------------~v-~~l~~~p~~~~~l~s~s~dg------------- 350 (645)
.++.+..+|..+|+.+-.+... . .+ ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4678889999999887766421 0 01 1234444 456777777665
Q ss_pred -----cEEEEeCCCCcEEEeeccC-C------CeEEEEEc----cCCC---EEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424 351 -----KVRIWGVCEKRVVDWADVR-D------VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 351 -----~i~vwd~~~~~~~~~~~~~-~------~v~~l~~s----p~g~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
.|.-+|..+++..-..... . ......+. -+|. .+++++.+|.+..+|..+++....... .
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~-~ 330 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE-V 330 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe-e
Confidence 6999999998877543211 1 00111111 1333 678888999999999998876543211 1
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEE------------------ECCCeEEEEECCcceeeEeecCCC--------CCeE
Q 006424 412 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM 465 (645)
Q Consensus 412 ~~~~~~~~~i~~i~~s~~g~~~l~~~------------------s~dg~I~iwd~~~~~~~~~~~~~~--------~~i~ 465 (645)
. ..+..+| + .++.+ ..+|.+.-.|..+.....+..... .+..
T Consensus 331 ~---------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 331 E---------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred c---------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 0 0112222 1 11111 134556666655433333321110 1111
Q ss_pred EEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424 466 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 501 (645)
Q Consensus 466 ~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~ 501 (645)
.-.....+..|+.++.||.|+.+|.++++.......
T Consensus 399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 111112567899999999999999999986665543
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.01 Score=48.21 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=71.1
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 203 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 203 V~~l~fsp---dg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|++|++.. || +.|+.||.|..|++|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------------------------- 34 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------------------------- 34 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------------------------
Confidence 66777654 43 4899999999999997543
Q ss_pred CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCcEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVRI 354 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~s~dg~i~v 354 (645)
.+..+. -.+.|++++-...+.++.+-.+|+|-+|+-. ..+...+....+.++.+...++ ..|++|-.+|.|-+
T Consensus 35 ~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 35 IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 233333 4567888887777899999999999999752 3333444455577777764232 26888888887743
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.43 E-value=0.037 Score=53.02 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=107.1
Q ss_pred cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+.+.+-...+..++|+|+.+ ++++....+.|...+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------------------------- 53 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------------------------- 53 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------------------------------------
Confidence 44666667799999999865 555666677777777542
Q ss_pred eeccCCCceeecc-CccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCe------EEEEe--c----CCCcEEEEEEeeC
Q 006424 273 FQIEESPLQELHG-HKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQ------CLNVF--D----HHNYVTCVQFNPI 338 (645)
Q Consensus 273 ~~~~~~~~~~l~~-h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~------~~~~~--~----~~~~v~~l~~~p~ 338 (645)
+.++.+.- -.+..-.+++..++.++.. -.++.+.+.++.... ....+ + ++..+-.++|+|
T Consensus 54 -----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~- 127 (248)
T PF06977_consen 54 -----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP- 127 (248)
T ss_dssp ------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-
T ss_pred -----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-
Confidence 22333221 1355677888777754444 458899999883321 11222 1 445789999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC---CcEEE---e------eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceee
Q 006424 339 DDNYFISGSIDGKVRIWGVCE---KRVVD---W------ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~---~~~~~---~------~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
.++.|+.+-...-..+|.+.. ..... . ......+.+++++|.. .+++.+.....+..+|..+...
T Consensus 128 ~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~-- 205 (248)
T PF06977_consen 128 KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV-- 205 (248)
T ss_dssp TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE--
T ss_pred CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE--
Confidence 666666777666667776653 11111 1 1123457899999964 5666677778888888554422
Q ss_pred eEEeeccccc---cCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 406 EKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 406 ~~~~~~~~~~---~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
....+..... ..-...-.|+|.++| .|+..++-+..+++
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 2222222110 011346789999997 56666677766655
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.061 Score=55.88 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=135.0
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEeCCCCcEEEe
Q 006424 291 LDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 291 ~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~ 365 (645)
..++.++.+ .+++...++.|.+.|..+.+.............++++| +++.+.++.. ++++.+.|..+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 355666655 45555567899999988888887776555778899999 7766666555 68899999988887765
Q ss_pred eccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--Ce
Q 006424 366 ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SK 442 (645)
Q Consensus 366 ~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~ 442 (645)
......-..++++|+|+.+++.. .++.+.+.|........ ...............+.++|+|....++...+ +.
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 44433348999999999777765 78899999976654421 01000111123456788999985444444444 58
Q ss_pred EEEEECCcceeeEeecCCCC-CeEEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424 443 LRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGD-DCRVYVWNYDELC 494 (645)
Q Consensus 443 I~iwd~~~~~~~~~~~~~~~-~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~ 494 (645)
+...|............-.. ....+..+|+|+.+.+... .+.+.+-|..+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 88888775433332111111 4567889999999988854 4788888877653
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.065 Score=53.32 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=99.8
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEeCC
Q 006424 296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGVC 358 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~~p~~~~~l~s~s~-----------dg~i~vwd~~ 358 (645)
...+.|+++.. .+.+++.+++..+..+. .....+.+...| ++.+.++... -|.|+.+|.
T Consensus 75 d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 34456666654 36666766555533321 224566778888 7776665433 133555554
Q ss_pred CCcEEE-eeccCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCc
Q 006424 359 EKRVVD-WADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 359 ~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
.+.... ...+-..-+.++||||++.|+.+... +.|.-|++........ ..... ...+..-.++...+| .
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~----~~~G~PDG~~vDadG-~ 225 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD----EEPGLPDGMAVDADG-N 225 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc----CCCCCCCceEEeCCC-C
Confidence 344443 44446667889999999988887654 7888887763111111 11111 112445567778887 4
Q ss_pred EEEEEECCC-eEEEEECC-cceeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424 433 RIMITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIGD 481 (645)
Q Consensus 433 ~l~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~ 481 (645)
+.+++..+| .|.+|+.. .....+.. ....+++++|- |+.+.|+..+.
T Consensus 226 lw~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence 554444443 89999876 33444444 33677788884 45555555443
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.34 E-value=0.29 Score=51.70 Aligned_cols=241 Identities=15% Similarity=0.184 Sum_probs=126.8
Q ss_pred cEEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 202 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sg-s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+....+||||++||-+ +..| .+++.|+.++....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------------------------------------- 164 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------------------------------------- 164 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE----------------------------------------
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC----------------------------------------
Confidence 44578899999988865 4444 49999998843211
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCC-----------CcEEEEecCCCeE--EEEec--CCCc-EEEEEEeeCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----------KTVRMWQVGCNQC--LNVFD--HHNY-VTCVQFNPID 339 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d-----------g~I~iwd~~~~~~--~~~~~--~~~~-v~~l~~~p~~ 339 (645)
..+.. ..-..+.|.+++ .|+....+ ..|+.|.+.+... ...++ .... ...+..++ +
T Consensus 165 ----d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d 237 (414)
T PF02897_consen 165 ----DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-D 237 (414)
T ss_dssp ----EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-T
T ss_pred ----Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-c
Confidence 11111 111238999885 44433322 2478888876543 24443 2222 56788888 8
Q ss_pred CCEEEEEeCC----CcEEEEeCCCC-----cEEEeeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeE
Q 006424 340 DNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 340 ~~~l~s~s~d----g~i~vwd~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~ 407 (645)
+++++..+.. ..+++.|+..+ ....+......+....-+..+.+++... ..+.|.-.++.........
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~ 317 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW 317 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence 8887654432 34788888774 4444444444443333333443443332 2356666777665531111
Q ss_pred -EeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEE-Ee-C
Q 006424 408 -VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IG-D 481 (645)
Q Consensus 408 -~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t-~s-~ 481 (645)
.-+... ....+..+....+ .+++....++ .|++++.. ............+.|..+...++++.+.. .+ .
T Consensus 318 ~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~ 392 (414)
T PF02897_consen 318 TVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSF 392 (414)
T ss_dssp EEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred eEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence 112211 0124555555443 5666666664 67888987 33332222223445666665566554432 22 2
Q ss_pred --CccEEEEeCCCCC
Q 006424 482 --DCRVYVWNYDELC 494 (645)
Q Consensus 482 --dg~I~iwd~~~~~ 494 (645)
-++++.||+.+++
T Consensus 393 ~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 393 TTPPTVYRYDLATGE 407 (414)
T ss_dssp TEEEEEEEEETTTTC
T ss_pred CCCCEEEEEECCCCC
Confidence 3688888988874
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.33 E-value=0.00035 Score=44.71 Aligned_cols=36 Identities=39% Similarity=0.939 Sum_probs=32.4
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 228 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd 228 (645)
...+.+|.+.|+++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345678999999999999999999999999999996
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.32 E-value=0.21 Score=49.53 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=112.0
Q ss_pred EEEcCCC-eEE--EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC-CCcEEE----
Q 006424 293 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD---- 364 (645)
Q Consensus 293 l~~s~~~-~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~-~~~~~~---- 364 (645)
++++.++ +++ -.+--.+|.|-|+..++.+..+...+... .-|..++-|.+-+.||.+.-..+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~---iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL---IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE---EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE---EEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 3556665 333 33445678999999999988887665332 233234567788889999888886 344332
Q ss_pred -eeccCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeecccccc----CCCCeEEEEEcCCCCcEEEEE
Q 006424 365 -WADVRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT----SGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 365 -~~~~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~ 437 (645)
+....++ +..-.+...+..++--+.+|.|+-.|+........ .+........ ..+...-+++++....+++..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1112222 22334445555666688899999999987764332 2222110000 012233466665432333332
Q ss_pred EC-------C--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEeCCCCCc
Q 006424 438 SE-------D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELCF 495 (645)
Q Consensus 438 s~-------d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~~~~~~ 495 (645)
.. | ..|.++|+.+.....+.. -..++.++..+.+.+ +|++.+ .++.+.+||..+++.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 21 1 257777877554444432 133577899998876 665544 579999999998853
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.27 E-value=0.17 Score=47.37 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=69.7
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEE-EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC-eEEE
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAI 375 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l-~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-v~~l 375 (645)
.++++.|...|.+++.+..+|.....+..-+.|.+- ...+ ++..+..|+.|++.+..|.++..++......+. ..+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 457999999999999999999887777644444433 3344 899999999999999999998777664444333 3344
Q ss_pred EEccCCCEEEEEecCCeEEEEEec
Q 006424 376 CYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 376 ~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
+..|-...|+.+...|.+.--..+
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eecCCCceEEEEeccceEEEEccC
Confidence 555633345555555655444433
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.19 Score=52.22 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=107.1
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCcEE
Q 006424 289 DVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV 363 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~ 363 (645)
....+++++++ .++.+. .++++.+.|-.+++..........-..+++.| +++.++.+. .++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 55678888886 544443 37899999999998888754333338999999 888655554 7889999998877766
Q ss_pred E-----eeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 364 D-----WADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 364 ~-----~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
. ..........+.++|+|+++.+.... +.+...|..+............ . ....+..+|+| ..+.
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-----~-~~~~v~~~p~g-~~~y 268 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-----G-APRGVAVDPAG-KAAY 268 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc-----C-CCCceeECCCC-CEEE
Confidence 4 23334456778999999977776554 4888888877654332111111 1 34568899998 4555
Q ss_pred EE-ECCCeEEEEECCcce
Q 006424 436 IT-SEDSKLRILDGVDVI 452 (645)
Q Consensus 436 ~~-s~dg~I~iwd~~~~~ 452 (645)
+. +..+.+.+.|.....
T Consensus 269 v~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 269 VANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEecCCCeEEEEeCCCCc
Confidence 44 556899999976533
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.21 E-value=0.017 Score=46.91 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=72.1
Q ss_pred EEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 330 VTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 330 v~~l~~~p~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
|+++++...++ +.|++|+.|..|++|+-. .++.-....+.|++++-... ..++.+..+|+|-+|+-......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR-- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR-- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee--
Confidence 56676665333 689999999999999753 55555556677888887665 57999999999999987544332
Q ss_pred EEeeccccccCCCCeEEEEEc---CCCCcEEEEEECCCeEEE
Q 006424 407 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLRI 445 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s---~~g~~~l~~~s~dg~I~i 445 (645)
.... ..++++.+. .+|...|++|-.+|.|-+
T Consensus 77 ---iKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 ---IKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2221 346666654 345567999988888753
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.4 Score=50.28 Aligned_cols=194 Identities=11% Similarity=0.145 Sum_probs=99.8
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---CCCcE-----EEEEEeeCCCCEEEEEeC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYV-----TCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v-----~~l~~~p~~~~~l~s~s~ 348 (645)
++.+..+.=-.+.|.++.|+.+..|+....||.++++|+. |+....++ ....| .+..+.. +| .++ -..
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~ 145 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTG 145 (410)
T ss_pred CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC-CC-EEE-ECC
Confidence 3344443322389999999988788899999999999986 33311111 11122 2222222 33 322 233
Q ss_pred CCcEEEEeCCCCc-E-EEeeccCCCeE----------EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 349 DGKVRIWGVCEKR-V-VDWADVRDVIS----------AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 349 dg~i~vwd~~~~~-~-~~~~~~~~~v~----------~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
++.+.+..--... . ........... ...++.+....+....++.+.+.+-..... ..
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~----- 214 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ID----- 214 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------cc-----
Confidence 4555444322211 1 11111111000 022334444444444455555333222110 11
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
..+++..++.||+| ++++.-..+|.+.+.... +....+... .......+.|.-+...++.- ...+.+..
T Consensus 215 ~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 215 SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 12689999999998 799999999999998743 333333332 23456778886554433333 33455544
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.059 Score=59.86 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=82.0
Q ss_pred CCCceeeccCccC-eEEEEEcC------CCeEEEEeCCCcEEEEecCCC--eEEE----EecCCCcEEEEEEeeCCCCEE
Q 006424 277 ESPLQELHGHKGD-VLDLAWSN------SNYLLSCSMDKTVRMWQVGCN--QCLN----VFDHHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 277 ~~~~~~l~~h~~~-V~~l~~s~------~~~l~s~s~dg~I~iwd~~~~--~~~~----~~~~~~~v~~l~~~p~~~~~l 343 (645)
++.+..+..|... |..++-.. +...+.|-.+..+..||.+-. +++. .+.......|++-.. ..+|
T Consensus 514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~i 591 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYI 591 (794)
T ss_pred CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceE
Confidence 4556666666543 55554321 125677888889999998753 2332 223455677877764 5689
Q ss_pred EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424 344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~ 398 (645)
|+|+.+|.||+||--+.+..+ +.+...+|..|+.+.||+++++.+ +..+.+++.
T Consensus 592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 999999999999954433333 557789999999999999988665 456667665
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0019 Score=67.14 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=77.7
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE-EEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 326 ~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
....+.-+.|+| .-.++|.+..+|.|.+..+.-.++..+.-++..++ +++|.|||+.+|+|-.||+|++.|...+...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88999999999999999998777777775666666 9999999999999999999999999887653
Q ss_pred eeEEeeccccccCCCCeEEEEEcCC
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
... .......|.++-|++.
T Consensus 98 ~~~------~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 98 VSF------LFSVETDISKGIWDRI 116 (665)
T ss_pred ecc------ccccccchheeecccc
Confidence 321 1112367888888753
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.024 Score=59.16 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=96.1
Q ss_pred CCcEEEEEEeeCCCCEEEEEe---CC-CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCe--EEEEEec
Q 006424 327 HNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT--CHFYKAS 399 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s---~d-g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~--i~iwd~~ 399 (645)
...+..-+|+| ++..++..+ .. ..++++|+.+++........+.-...+|+|||+.++.. ..||. |+++|+.
T Consensus 192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34566678888 666544432 22 35999999988776666666666677899999977765 45665 5566666
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCc-ceeeEeecCCCCCeEEEEEecCCCEE
Q 006424 400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKHI 476 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l 476 (645)
+..... +. .. .+.-+.-.|+|+|+.++++.+..|.-.|| +... ....+... .+.-..-.|+|||++|
T Consensus 271 ~~~~~~--Lt-~~-----~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKNLPR--LT-NG-----FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCccee--cc-cC-----CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCEE
Confidence 655322 11 11 12233667999997777787777765555 4332 12222221 1111266789999999
Q ss_pred EEEeC-Ccc--EEEEeCCCC
Q 006424 477 ISIGD-DCR--VYVWNYDEL 493 (645)
Q Consensus 477 ~t~s~-dg~--I~iwd~~~~ 493 (645)
+..+. +|. |.+.|+.++
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEEeccCCceeeEEeccCCC
Confidence 88774 344 555555544
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.018 Score=58.95 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=91.9
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC-------EEEEEeCCCcEEEEeCCCCc--EEEe-ec--
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDW-AD-- 367 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~-------~l~s~s~dg~i~vwd~~~~~--~~~~-~~-- 367 (645)
.|.++.....++-.|++.|+.+........|.-+.+.| +.+ .-+.|-.|..|.-||.|-.. .+.. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 45577777889999999999999988666687778877 432 23456668889999987422 2222 12
Q ss_pred --cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEE
Q 006424 368 --VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 445 (645)
Q Consensus 368 --~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~i 445 (645)
......|++-..+| ++++|+.+|.|++||--....... ++ +-+.+|..+..+.+| .++++.+ +..+.+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTA---lP----gLG~~I~hVdvtadG-Kwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTA---LP----GLGDAIKHVDVTADG-KWILATC-KTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhc---cc----ccCCceeeEEeeccC-cEEEEec-ccEEEE
Confidence 22345566655555 899999999999999743322111 22 235899999999998 5555544 445555
Q ss_pred EE
Q 006424 446 LD 447 (645)
Q Consensus 446 wd 447 (645)
.+
T Consensus 497 i~ 498 (644)
T KOG2395|consen 497 ID 498 (644)
T ss_pred EE
Confidence 54
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.98 E-value=0.46 Score=51.21 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=108.7
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCc------EE-EEEEeeCCCCEEEEEe---------CCCcEEEEeCCCCcE
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV 362 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------v~-~l~~~p~~~~~l~s~s---------~dg~i~vwd~~~~~~ 362 (645)
+.++.++.++.|..+|.++|+.+-.+..... +. ...+. +..++.++ .++.+..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6888889999999999999999887763332 11 12222 24455554 367899999999886
Q ss_pred EEeeccC-C--------------------Ce-EEEEEccCCCEEEEEecCC------------------eEEEEEecCCc
Q 006424 363 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND 402 (645)
Q Consensus 363 ~~~~~~~-~--------------------~v-~~l~~sp~g~~l~~g~~dg------------------~i~iwd~~~~~ 402 (645)
+-..... . .+ .+..+.+.+..+++++.++ .+.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6432221 0 01 1244555567788887665 68888888887
Q ss_pred eeeeEEeecccc----ccCCCCe-EEEEEcCCC--CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCE
Q 006424 403 LKLEKVDFHDRK----KTSGNKI-TGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 403 ~~~~~~~~~~~~----~~~~~~i-~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 475 (645)
..-.. ....+. .....++ ..+. .-+| ...+++++.+|.+...|..+.......... ...++.+| ..
T Consensus 268 ~~W~~-~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFY-QTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GL 340 (488)
T ss_pred EEEEe-eCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ce
Confidence 65431 111100 0000111 1111 0122 136788889999999998765554443211 11223333 22
Q ss_pred EEEE------------------eCCccEEEEeCCCCCcCCCcc
Q 006424 476 IISI------------------GDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 476 l~t~------------------s~dg~I~iwd~~~~~~~~~~~ 500 (645)
++.+ ..+|.+.-.|..+++..+...
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 3222 235778888888777555443
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.015 Score=59.51 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=98.5
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-------EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 339 DDNY-FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 339 ~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
+.++ +.++.....++-.|+..|+++.--.....|+-+.+.|+.+ .-++|-.+..|.-||.+-.......+ .
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-V 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-e
Confidence 3444 3445555678888999999887555555588888888653 23557788899999998544311111 1
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
+.+.........|++-..+| ++++|+.+|.|++||--.....-....-..+|..+..+.+|++|+..+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22222224566777777776 899999999999999532222222333677999999999999988766 455555554
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0037 Score=65.04 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=76.0
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.-.|.-+.|+|.-.++|.+..+|.|.+..+.- +.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----------------------------------------------qR 53 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW----------------------------------------------QR 53 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc----------------------------------------------ce
Confidence 34588999999999999999999999988752 33
Q ss_pred ceeeccCccCeE-EEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE--ecCCCcEEEEEEee
Q 006424 280 LQELHGHKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNP 337 (645)
Q Consensus 280 ~~~l~~h~~~V~-~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~v~~l~~~p 337 (645)
+.++.-|...++ +++|.||| .|+.|-.||+|++.|++++..+.. +.....|.++.|.+
T Consensus 54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 455555666666 99999998 888999999999999999988887 45677888888864
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.91 E-value=0.15 Score=55.65 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=98.7
Q ss_pred cCeEEEEEcCCC-eEEEEe------CCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---------
Q 006424 288 GDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------- 349 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s------~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--------- 349 (645)
..+...+.+|++ .++... .|. .+.+++.. +.. ..+-.....+.-.|+| ++..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 467788899987 444332 243 45555542 222 2222223477889999 87766665432
Q ss_pred ---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEE---EEecCCceeee-EEeeccccccCCCCeE
Q 006424 350 ---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGNKIT 422 (645)
Q Consensus 350 ---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i---wd~~~~~~~~~-~~~~~~~~~~~~~~i~ 422 (645)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....+..... ...+. ......+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCccc
Confidence 233333444443332 3456799999999999888866 477766 33223321111 00111 11123468
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEE--CCcceeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
++.|.+++ . |+++..++...+|. +....... ........+..++-+++ .++....+|.+
T Consensus 501 ~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 89999997 4 44555555555554 33222111 22222456666666653 34444555533
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.68 E-value=0.2 Score=52.62 Aligned_cols=134 Identities=11% Similarity=0.173 Sum_probs=72.3
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC------------cEEEee
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK------------RVVDWA 366 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~------------~~~~~~ 366 (645)
|.++....++.|.+||+.+++.+..+.... |..+.|++ ++++++..+. ..+.+++.... ......
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~ 193 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIH 193 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEE
Confidence 634444444589999999999999998765 99999999 8899888875 57888876655 444455
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.....|.+.+|..+ .++-.+.. .++. +-++.... +..- ..++.=+.+.+.. ..+.....|+.|..+
T Consensus 194 E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~--i~~l------d~~~yllgy~~~~-~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 194 EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI--IAHL------DKPLYLLGYLPKE-NRLYLIDRDGNVISY 259 (443)
T ss_dssp EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE--EEE-------SS--EEEEEETTT-TEEEEE-TT--EEEE
T ss_pred EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce--EEEc------CCceEEEEEEccC-CEEEEEECCCCEEEE
Confidence 55778888888765 44444433 5554 33332211 1111 1345555566643 567777777777766
Q ss_pred ECC
Q 006424 447 DGV 449 (645)
Q Consensus 447 d~~ 449 (645)
.+.
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 543
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.65 E-value=0.0039 Score=39.54 Aligned_cols=36 Identities=42% Similarity=0.752 Sum_probs=31.1
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 314 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd 314 (645)
+...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667899999999999875 899999999999996
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.60 E-value=0.2 Score=54.77 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=102.6
Q ss_pred EEEEEcCCCeEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc-----EEEEeC
Q 006424 291 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGV 357 (645)
Q Consensus 291 ~~l~~s~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~-----i~vwd~ 357 (645)
.+++...+...++||.| .++..||..+++-...-. ....-.+++.. ++.+.++|+.||. +..||.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 34454444477888888 357788888776443222 11111122222 7889999999864 888888
Q ss_pred CCCcEEEeeccCCCeEEEEE-ccCCCEEEEEecCC------eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 358 CEKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 358 ~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~g~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
.+.+-............... .-+|...++|+.++ .+..||..++......- +.... .. ..++...+
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~-M~~~R----~~-~g~a~~~~- 476 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP-MNTRR----SG-FGVAVLNG- 476 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC-ccccc----cc-ceEEEECC-
Confidence 87765544333222222222 23677777887554 56788888776643211 11111 11 12333333
Q ss_pred CcEEEEEECCC-----eEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCC
Q 006424 431 SQRIMITSEDS-----KLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 493 (645)
Q Consensus 431 ~~~l~~~s~dg-----~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~ 493 (645)
.+++.|+.|+ +|..||.....-.... ......+..+. -+++..++|+.|| +|-.||..+.
T Consensus 477 -~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 477 -KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred -EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 6888888776 3667776532222211 11111221122 2567778888775 4666655544
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.71 Score=44.38 Aligned_cols=165 Identities=9% Similarity=0.150 Sum_probs=109.3
Q ss_pred ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
.|-...|.++.|+|+. .|++......-.||=-.+|+.+.++. .-.....+.+.. ++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999986 78888887888888777899988875 223455677776 6666666666888888877554
Q ss_pred cE-E-------Ee--ecc-CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-E-eecc-ccccCCCCeEEEEE
Q 006424 361 RV-V-------DW--ADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-V-DFHD-RKKTSGNKITGIQF 426 (645)
Q Consensus 361 ~~-~-------~~--~~~-~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~-~~~~-~~~~~~~~i~~i~~ 426 (645)
.. . .+ ..+ +...-.++|+|....|.++-+..-+.+|........... . ..+. ...-.-..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 21 1 11 112 556788999999999998888887888777643321110 0 0000 00001235678889
Q ss_pred cCCCCcEEEEEECCCeEEEEECC
Q 006424 427 SRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
.+....+++.+.+++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 87655778888888888888865
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.005 Score=56.32 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=75.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 343 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+...+.||.|+-++++..+... ..-+... ...-.-+..+++|+.+|.|.+|............... ...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~------~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG------EES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcc------ccc
Confidence 3444567888887776533221 1111111 1111245679999999999999887332211111111 123
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceee-EeecCCC-CCeEEEEEecCCCEEEEE--eCCccEEEEeCCC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDE 492 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~-~~i~~v~~sp~~~~l~t~--s~dg~I~iwd~~~ 492 (645)
|.++.-.-+...+..+++.||.|+.|+....... +.++ |. .++.....+..+++++.+ |.|..++.|++..
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333222222258899999999999997633222 2222 33 444444445555566665 6666666666654
No 372
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.34 E-value=1.6 Score=45.29 Aligned_cols=182 Identities=10% Similarity=0.124 Sum_probs=96.4
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--------------------
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------- 359 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-------------------- 359 (645)
.++.-+.||.+.+++-+.......+..---...+.+.+ ..+.|++++.+..+..|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78888999999999987655444444323334567888 778899998888999986521
Q ss_pred CcEEE---eeccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE------c
Q 006424 360 KRVVD---WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S 427 (645)
Q Consensus 360 ~~~~~---~~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------s 427 (645)
++... .......+..+..-. ....+++-+ ..++...+..+ .. .....+.. .+.....| .
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G-~l-~~~krLd~------~p~~~~~Y~~~~~~~ 296 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG-SL-RFQKRLDY------NPSCFCPYRVPWYNE 296 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC-eE-EEEEecCC------ceeeEEEEEeecccC
Confidence 01000 122233344443322 222233222 23444444432 11 11111111 11111111 2
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe--EEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ--MSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i--~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++....+++++.++.+.||.-.+..-.... ...+| .-..|..-...|++-+.+|.+.+-=+.+.
T Consensus 297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 222235899999999999985543333222 22222 22223333567788888888887665543
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.29 E-value=0.4 Score=52.51 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=62.3
Q ss_pred eEEEEEcCCC-eEEEEeCC------------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE--
Q 006424 290 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-- 354 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v-- 354 (645)
.+.-.|+|+| .+++.+.. +.+.+.+++.+.... .....|..+.|+| ||..++... ++.|++
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 6667888884 55555322 233333444433322 3356799999999 999887766 577777
Q ss_pred -EeCCCCcEE-----Ee-eccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 355 -WGVCEKRVV-----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 355 -wd~~~~~~~-----~~-~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
-....+... .+ ......+.++.|..++.+ +++..++.-.+|.+.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 443444411 12 223344688999998885 466655555555543
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=1.2 Score=42.92 Aligned_cols=160 Identities=12% Similarity=0.172 Sum_probs=97.5
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+.|-...|.++.|+|+.+.|++......-.||=...|+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl----------------------------------------- 119 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL----------------------------------------- 119 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-----------------------------------------
Confidence 455666699999999999888887776666664443322
Q ss_pred cCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE----------EecC-CCcEEEEEEeeCCCC
Q 006424 276 EESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----------VFDH-HNYVTCVQFNPIDDN 341 (645)
Q Consensus 276 ~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~----------~~~~-~~~v~~l~~~p~~~~ 341 (645)
++++. + -..--.+.|..+| +.++--.++.+.++.+.....+. ...+ +.....++|.| .++
T Consensus 120 ----irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~ 193 (316)
T COG3204 120 ----IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDH 193 (316)
T ss_pred ----EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCc
Confidence 22221 1 1122234555455 44555566777777665442211 1123 55788999999 777
Q ss_pred EEEEEeCCCcEEEEeCCCCc-EEE---eecc-------CCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCc
Q 006424 342 YFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGND 402 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~-~~~---~~~~-------~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~ 402 (645)
.|+.+-+..-+.||.+.... ... ...+ -..+.++.|++ .+.+++.+.+++.+.-.|.....
T Consensus 194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 77777777778888765432 111 1111 13467788887 45567777778888888877654
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.16 E-value=1.9 Score=44.25 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=84.4
Q ss_pred CCC-eEEEE--eC----CCcEEEEecCCCeEEEEecC----CCcEEEEEEeeCCCCEEEEEeC-----------------
Q 006424 297 NSN-YLLSC--SM----DKTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI----------------- 348 (645)
Q Consensus 297 ~~~-~l~s~--s~----dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~~p~~~~~l~s~s~----------------- 348 (645)
|+| .++|+ .. -|-+.+.|-++.+....... ...-+.+-|.| ..+.++|...
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhc
Confidence 566 55554 22 24677888777777666542 23456777888 7788887653
Q ss_pred ---CCcEEEEeCCCCcEEEeeccC---CCeEEEEEcc--CCCEEEEEe-cCCeEEE-EEecCCceeeeE-Eeecccc---
Q 006424 349 ---DGKVRIWGVCEKRVVDWADVR---DVISAICYIP--DGKGFIVGS-ITGTCHF-YKASGNDLKLEK-VDFHDRK--- 414 (645)
Q Consensus 349 ---dg~i~vwd~~~~~~~~~~~~~---~~v~~l~~sp--~g~~l~~g~-~dg~i~i-wd~~~~~~~~~~-~~~~~~~--- 414 (645)
..++.+||+.+.+.++..... ..+..+.|.. +..+=++|+ -.++|.. |....+....+. +.+....
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 357999999999988866554 3455677754 444433333 3344444 333445444332 2222110
Q ss_pred ----------ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---eeEee----------------cCCCCCeE
Q 006424 415 ----------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFKG----------------LPKSGSQM 465 (645)
Q Consensus 415 ----------~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~---~~~~~----------------~~~~~~i~ 465 (645)
.....-|+.|..|.|.+.+.+++=.+|.|+.||+..+. ..-+. ..-.+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 00124579999999984444455568999999987422 11111 01122345
Q ss_pred EEEEecCCCEEEEEe
Q 006424 466 SASFTTTGKHIISIG 480 (645)
Q Consensus 466 ~v~~sp~~~~l~t~s 480 (645)
-+..|-||+.|...+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 677888998887654
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.14 E-value=2.2 Score=44.92 Aligned_cols=192 Identities=14% Similarity=0.152 Sum_probs=101.1
Q ss_pred eEEEEEcCCC-eEE-EEeCCC----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC-----------cE
Q 006424 290 VLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------KV 352 (645)
Q Consensus 290 V~~l~~s~~~-~l~-s~s~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg-----------~i 352 (645)
+....++|++ +++ +.+..| .+++.|+++|+.+...-.......+.|.+ +++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 4457788987 444 445544 49999999998765431111223399999 777766655433 37
Q ss_pred EEEeCCCCc---EEEeeccC-CC-eEEEEEccCCCEEEEEecC----CeEEEEEecCC---ceeeeEEeeccccccCCCC
Q 006424 353 RIWGVCEKR---VVDWADVR-DV-ISAICYIPDGKGFIVGSIT----GTCHFYKASGN---DLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 353 ~vwd~~~~~---~~~~~~~~-~~-v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 420 (645)
+.|.+.+.. .+-+.... .. ...+..+++++++++.... ..+.+.++... ......+.... .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~~ 279 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DGV 279 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS-
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cce
Confidence 888887643 12222222 22 5688899999998875443 34667777654 22222222221 122
Q ss_pred eEEEEEcCCCCcEEEEEEC---CCeEEEEECCccee---eEeecCCCC--CeEEEEEecCCCEEEEE-eCC--ccEEEEe
Q 006424 421 ITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSG--SQMSASFTTTGKHIISI-GDD--CRVYVWN 489 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~--~i~~v~~sp~~~~l~t~-s~d--g~I~iwd 489 (645)
...+... .+ .+++.... .+.|.-.++..... ......+.. .+..+. ..+.+|+.. ..+ ..|++++
T Consensus 280 ~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEE
Confidence 2333333 32 44444433 35677777664431 112222333 344444 445555544 344 3688888
Q ss_pred CC
Q 006424 490 YD 491 (645)
Q Consensus 490 ~~ 491 (645)
+.
T Consensus 356 ~~ 357 (414)
T PF02897_consen 356 LD 357 (414)
T ss_dssp TT
T ss_pred CC
Confidence 88
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.046 Score=61.02 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=95.7
Q ss_pred CCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424 370 DVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 443 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I 443 (645)
..+..+...+|+...++... +-.|..||++.-..... .+..+...........++.|.|.-....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34556666778776555443 33788999875433221 1111111111234567888999765677888899999
Q ss_pred EEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424 444 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 523 (645)
Q Consensus 444 ~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~ 523 (645)
++..+................++++|+|.|+.++.|-..|++.-|...-. .....+.. -+...+.++.+.|-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~P------p~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEP------PVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCC------CcCCCcceeEEEEec
Confidence 99886644333333335567899999999999999999999998865422 11111111 122245677777776
Q ss_pred CCcccccc
Q 006424 524 IGTEQKSL 531 (645)
Q Consensus 524 ~~~~l~~~ 531 (645)
...+++..
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 66666543
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.87 E-value=2 Score=42.23 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-------------
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------------- 364 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~------------- 364 (645)
+..|+.|+.+| +.++++..............|..+...| +-+.+++-+ |+.++++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 34888998888 9999984333333333444499999998 666666665 5999999987533222
Q ss_pred --eeccCCCeEEEE--EccCCCEEEEEecCCeEEEEEecCCce----eeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 365 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 365 --~~~~~~~v~~l~--~sp~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
.......+..++ -...+...++......|.+|....... ....+.+. ..+.+++|.++ .++.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v 153 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICV 153 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEE
Confidence 112223344444 122344444445555999998876422 22333333 67889999944 5666
Q ss_pred EECCCeEEEEECC
Q 006424 437 TSEDSKLRILDGV 449 (645)
Q Consensus 437 ~s~dg~I~iwd~~ 449 (645)
|..+ ...+.|+.
T Consensus 154 ~~~~-~f~~idl~ 165 (275)
T PF00780_consen 154 GTSK-GFYLIDLN 165 (275)
T ss_pred EeCC-ceEEEecC
Confidence 6644 47777766
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.81 E-value=2.3 Score=42.41 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=105.5
Q ss_pred EEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-EEeec---
Q 006424 294 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD--- 367 (645)
Q Consensus 294 ~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~--- 367 (645)
.|.++. .+.+--..+.|.-|+..+++. ..+...+.+.++.... .+..|+++. ..+.+++...+.. ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 345543 455556677888888876543 3444445555555444 444555543 3467777765554 22211
Q ss_pred --cCCCeEEEEEccCCCEEEEEec-----------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 368 --VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 368 --~~~~v~~l~~sp~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
.....+.....|+|.+.+.... -|.++.+|.. ... .... .. +-..-+.++||||+..++
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~-~~l~--~~----~~~~~NGla~SpDg~tly 178 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGV-VRLL--DD----DLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCE-EEee--cC----cEEecCceEECCCCCEEE
Confidence 1245667888899876655333 1334444432 221 1111 11 013346899999985555
Q ss_pred EEEECCCeEEEEECCc-------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc-cEEEEeCC
Q 006424 435 MITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYD 491 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg-~I~iwd~~ 491 (645)
++=+..+.|.-|+... ....+......+..-.++...+|.+-+++-.+| .|.+|+.+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 5556668888887541 111122222456667788888888886555554 99999988
No 380
>PHA02713 hypothetical protein; Provisional
Probab=95.80 E-value=0.49 Score=51.82 Aligned_cols=184 Identities=9% Similarity=0.077 Sum_probs=93.6
Q ss_pred CeEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCcEEEe
Q 006424 299 NYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDW 365 (645)
Q Consensus 299 ~~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~ 365 (645)
..++.||.+ ..+..||..++.-...-. ....-.+++.. ++.+.+.||.++ .+..||..+.+-...
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 356666653 347788887765432211 11111122222 678888888764 488899887765543
Q ss_pred eccCCCeEEE-EEccCCCEEEEEecCC-----------------------eEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 366 ADVRDVISAI-CYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 366 ~~~~~~v~~l-~~sp~g~~l~~g~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
.....+.... ...-+|+..++|+.++ .+..||..+....... .+... ...
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~----r~~- 456 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTG----TIR- 456 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcc----ccc-
Confidence 3322221111 1123677777776542 4677887766553211 11110 011
Q ss_pred EEEEEcCCCCcEEEEEECC------CeEEEEECCc-ceee-Ee-ecCCCCCeEEEEEecCCCEEEEEeCCc--cEEEEeC
Q 006424 422 TGIQFSRDESQRIMITSED------SKLRILDGVD-VIHK-FK-GLPKSGSQMSASFTTTGKHIISIGDDC--RVYVWNY 490 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~d------g~I~iwd~~~-~~~~-~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg--~I~iwd~ 490 (645)
.+++.. +| .+.+.|+.+ ..+..||..+ ..-. .. ..........+. -+|+..++||.|| .+-.||.
T Consensus 457 ~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 457 PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence 122222 33 566777654 2467788664 2211 11 111112222222 2788889999888 6777777
Q ss_pred CCCC
Q 006424 491 DELC 494 (645)
Q Consensus 491 ~~~~ 494 (645)
.+.+
T Consensus 533 ~~~~ 536 (557)
T PHA02713 533 YTYE 536 (557)
T ss_pred cccc
Confidence 6653
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.66 E-value=1.1 Score=47.24 Aligned_cols=151 Identities=13% Similarity=0.244 Sum_probs=92.2
Q ss_pred ccCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEeCCCcEEEEeCCC-
Q 006424 287 KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWGVCE- 359 (645)
Q Consensus 287 ~~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s~dg~i~vwd~~~- 359 (645)
-.+|..++|.... .+++.- .+|.+++=| ...+..| ..|..+.|.|. +.-.+++......|.||.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 3578899998654 344432 233333222 2334444 34889999983 122344445568899998852
Q ss_pred ----CcEEE--eecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 360 ----KRVVD--WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 360 ----~~~~~--~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
++... .-.. .--...+.|+|....|++-+....-.+++++......+ ..... .+.|.|.+|.+|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCACWT~D 166 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCACWTKD 166 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEEecCc
Confidence 22211 1111 11234577999999888877776667777775554433 22232 378999999999
Q ss_pred CCcEEEEEECCCeEEEEECC
Q 006424 430 ESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~ 449 (645)
|.+++++.+..=.-++||-.
T Consensus 167 G~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCEEEEEeCCeEEEEEecCc
Confidence 97666666777778999944
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.98 Score=43.13 Aligned_cols=184 Identities=13% Similarity=0.191 Sum_probs=102.4
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 207 KFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 207 ~fspdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.|||||.+|...-.| |.|-|||...+ .+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg 155 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG 155 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence 589999988876443 77889988752 23455
Q ss_pred eeccCccCeEEEEEcCCCeEEEEeCCC-------------------cEEEEecCCCeEEEEec-----CCCcEEEEEEee
Q 006424 282 ELHGHKGDVLDLAWSNSNYLLSCSMDK-------------------TVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP 337 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~~l~s~s~dg-------------------~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p 337 (645)
.+..|.-.-..+.|.+||.++.....| ++.+.|..+|..+.... +.-.|..++..+
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 666676666778888888433332211 23333434444443321 334577777776
Q ss_pred CCCCEEEEEeCCCc-----EEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCce
Q 006424 338 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDL 403 (645)
Q Consensus 338 ~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~ 403 (645)
++..++-+-..|. -.+=....++.+++.. ....|-+++.+.+..+++..+-. +...+||..++..
T Consensus 236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 6655554433221 1111112233222221 23457778887766666655554 4667899998876
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
.... .+ .....+.-... -+++.+.+|.+.++.
T Consensus 315 v~~a-~l--------~daaGva~~~~---gf~vssg~G~~~~~s 346 (366)
T COG3490 315 VSEA-AL--------PDAAGVAAAKG---GFAVSSGQGRIIFYS 346 (366)
T ss_pred Eecc-cc--------cccccceeccC---ceEEecCCceEEecc
Confidence 4321 11 11223333333 377777888888775
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.60 E-value=1.2 Score=44.33 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=104.4
Q ss_pred EEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc--
Q 006424 205 TLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL-- 280 (645)
Q Consensus 205 ~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 280 (645)
.+++|.||++++.. +---+|.|-|+...+.......+.+..............+..++...+..... ++..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~-----Gk~~~~ 173 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDAD-----GKEAQK 173 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETST-----SSEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCC-----CCEeEe
Confidence 35788888877664 33456888888877665555555444333333222222222222222222110 1111
Q ss_pred --eeeccCccCeE-EEEEcC-CCeEEEEeCCCcEEEEecCCCeEE--EEec-----------CCCcEEEEEEeeCCCCEE
Q 006424 281 --QELHGHKGDVL-DLAWSN-SNYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 281 --~~l~~h~~~V~-~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~--~~~~-----------~~~~v~~l~~~p~~~~~l 343 (645)
..+..-..++. .-++.. ++.++--+.+|.|+--|+...... .... -.+.-.-+++++ ..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeE
Confidence 11111122221 223333 346666888899888888655422 1111 112234467777 44444
Q ss_pred EEEeC---C-------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEE-ecCCeEEEEEecCCcee
Q 006424 344 ISGSI---D-------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVG-SITGTCHFYKASGNDLK 404 (645)
Q Consensus 344 ~s~s~---d-------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g-~~dg~i~iwd~~~~~~~ 404 (645)
++.-. + ..|-++|+.+++.+........+.+|..+.+.+ +|++. ..++.+.+||..+++..
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 43221 1 148888999999988777777888999999877 55444 45789999999988654
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.59 E-value=0.058 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
....|..++|+|...+||.++.+|.|.+++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34578999999999999999999999999994
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.50 E-value=0.048 Score=36.99 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 230 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~ 230 (645)
...|.+++|+|...+||.|+.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999984
No 386
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.46 E-value=3.4 Score=41.98 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=82.8
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CC-cEEEE--eCCCCcEEEeecc--CCCeEEEEEcc
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DG-KVRIW--GVCEKRVVDWADV--RDVISAICYIP 379 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~---dg-~i~vw--d~~~~~~~~~~~~--~~~v~~l~~sp 379 (645)
..|.--|+.+|+....+.....+..+.|+|.++.+|+.|-+ +. .-+|| +..+.....+..+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 34666688888888888888899999999988888888764 22 12556 4444444443333 22334445889
Q ss_pred CCCEEEEEe--c---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-------------
Q 006424 380 DGKGFIVGS--I---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS------------- 441 (645)
Q Consensus 380 ~g~~l~~g~--~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg------------- 441 (645)
||..+.--+ . +..|.-+|+.+..... + ... .....+..+++| .+++-=+.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~-~~~------p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--L-MEM------PWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEE--E-EEE-------SEEEEEE-TTS-SEEEEEE----------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceE--E-EeC------CceeeeEEcCCC-CEEEecCCCCCccccccccceec
Confidence 998665422 2 2345556666554321 1 111 234455567787 5554433332
Q ss_pred ---eEEEEECCcceee-EeecC-------C--CCCeEEEEEecCCCEEEEEe-CCccEEEEeC
Q 006424 442 ---KLRILDGVDVIHK-FKGLP-------K--SGSQMSASFTTTGKHIISIG-DDCRVYVWNY 490 (645)
Q Consensus 442 ---~I~iwd~~~~~~~-~~~~~-------~--~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~ 490 (645)
-|++++....... +..+. + ...=....|+|||++++-.| ..|...||-+
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4556665532221 11110 0 01124678999999877655 4676666643
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.31 Score=54.61 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=71.5
Q ss_pred CeEEEEeCCCcEEEEecCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEE-
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA- 374 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~- 374 (645)
..++.|+..|.|...|+...-. ..--....+|++++|+. ++..++.|-.+|.|.+||+..++..+ +..+..+.+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 3688888899999988875422 11123567999999998 99999999999999999999877655 4445544444
Q ss_pred --EEEccCCCEEEEEecCCeEEEEEec
Q 006424 375 --ICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 375 --l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 344456667888888886 66553
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.34 E-value=2.8 Score=40.25 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=105.4
Q ss_pred cEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 202 CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
-...+.|..+|.++-+.+.-| .|+.+|+.+++......-+...+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--------------------------------- 92 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--------------------------------- 92 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E---------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc---------------------------------
Confidence 345688877888888888766 688899988654332222111100
Q ss_pred ceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
.-+.-+.+.+..+.| .++...+||..+-+.+..+.....=+.++. +++.|+.......++++|..+
T Consensus 93 -EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 93 -EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp -EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT
T ss_pred -eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCcc
Confidence 001112233444444 457899999999999999987777788874 666777766677899999877
Q ss_pred CcEEE---eeccC---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc---------cccCCCCeEEE
Q 006424 360 KRVVD---WADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGI 424 (645)
Q Consensus 360 ~~~~~---~~~~~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~i~~i 424 (645)
-+... ..... ..++.+.|- +|...|=.-....|...|..++..... +.+.+- ........+.|
T Consensus 159 f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 159 FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp -SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEeE
Confidence 55433 22222 234556664 555444444555666677766665322 222111 11113568899
Q ss_pred EEcCCCCcEEEEE
Q 006424 425 QFSRDESQRIMIT 437 (645)
Q Consensus 425 ~~s~~g~~~l~~~ 437 (645)
++.|....+++||
T Consensus 237 Ayd~~~~~l~vTG 249 (264)
T PF05096_consen 237 AYDPETDRLFVTG 249 (264)
T ss_dssp EEETTTTEEEEEE
T ss_pred eEeCCCCEEEEEe
Confidence 9999875666665
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.96 E-value=4.3 Score=40.29 Aligned_cols=230 Identities=13% Similarity=0.099 Sum_probs=101.9
Q ss_pred CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe--cC----CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DH----HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~----~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
-...+.+|.|..++.-...+..+.|.. -.+.|+.-... .. .-...++.|.. ...+++| ..+ +.+.-.+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence 355889999986553333344554322 22222221111 11 22466777753 4445554 344 44444444
Q ss_pred CcEEEee----ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 360 KRVVDWA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 360 ~~~~~~~----~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
++.-... ..+.....+....++...+ ++..|.| |.....-..-....... ...+..+.-+++| .+++
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~-----~gs~~~~~r~~dG-~~va 160 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSET-----SGSINDITRSSDG-RYVA 160 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S---------EEEEEE-TTS--EEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCC-----cceeEeEEECCCC-cEEE
Confidence 4432221 2233444455444443333 3444543 33333322222221111 2678888999998 6777
Q ss_pred EEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424 436 ITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 514 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 514 (645)
+++......-||.... -..... .....|..|.|+|++.+.+.+ ..|.|++=+.......+...... ....+
T Consensus 161 vs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~------~~~~~ 232 (302)
T PF14870_consen 161 VSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIP------IKTNG 232 (302)
T ss_dssp EETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-T------TSS--
T ss_pred EECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCC------cccCc
Confidence 7766666678885532 333332 256789999999998877755 78888877722221111111100 00122
Q ss_pred -cEEEEecCCCCccccccCCCCcc
Q 006424 515 -VSVAVQWPGIGTEQKSLCSSSLR 537 (645)
Q Consensus 515 -~~~~v~~s~~~~~l~~~~~~~~~ 537 (645)
-++.++|.+++...+..+++.+.
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-EE
T ss_pred eeeEEEEecCCCCEEEEeCCccEE
Confidence 25777888776665555554443
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.92 E-value=8.6 Score=43.63 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc---------EEEEEEee---------------CCCCEEEEEeCCCcEE
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY---------VTCVQFNP---------------IDDNYFISGSIDGKVR 353 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---------v~~l~~~p---------------~~~~~l~s~s~dg~i~ 353 (645)
++.++.++.++.|.-.|..+|+.+-.+..... .+.+.+.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56888888899999999999998888753322 22233321 0234788888999999
Q ss_pred EEeCCCCcEEEeeccCCCeE-------------EEEEcc--CCCEEEEEec----------CCeEEEEEecCCceeee
Q 006424 354 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE 406 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~-------------~l~~sp--~g~~l~~g~~----------dg~i~iwd~~~~~~~~~ 406 (645)
-.|.++++.+...+..+.+. .+.-.| .+..+++|+. +|.|+-+|.++++..-.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999998876443332221 111122 2345666643 68899999998886543
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.90 E-value=0.1 Score=48.00 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=38.2
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEec-CC-CcEEEEEEeeCCCCEEEEE--eCCCcEEEEeCC
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC 358 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~-~~-~~v~~l~~~p~~~~~l~s~--s~dg~i~vwd~~ 358 (645)
+..+++.||.|+.|++..++.+...+ |+ .++..+..+. .+..++++ |.|..++.|++.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 78899999999999999888877665 44 3344444443 44455555 555556666553
No 392
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.32 Score=54.72 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=88.4
Q ss_pred CeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeE--------EEE----ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 289 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC--------LNV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 289 ~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~--------~~~----~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
++..+...+|. .++..+.+-.|..||+++-.. +.. +.......++.|+|.-....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 33444444453 344445556788999864321 111 123345678899985556677788899999
Q ss_pred EEeCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 354 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 354 vwd~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+..+.... .+.........++++|+|.|+.+++|...|++.-|........ . .+.........|.+++|-...
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~--~--ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS--E--IPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee--c--ccCCCcCCCcceeEEEEecce
Confidence 98775432 2333456678999999999999999999999998876533211 1 122111224789999998763
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.17 Score=56.46 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
-+..++.|+..|.+-..|+.+.-. ..-....++|++++|+.+|..++.|-.+|.|.+||+...+... .+..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-~i~e~~a--- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-VITEHGA--- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-eeeecCC---
Confidence 445688888889999999877532 3334557899999999999999999999999999998766533 2333322
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
....+.-+.+..++ ..++++...|. +|.
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc--eEE
Confidence 12334444455554 46777777776 454
No 394
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.48 E-value=1.3 Score=45.77 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=56.5
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCC-----e--E-EEEecC-----CCcEEEEEEeeCCCCEEEEEeCC-----
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----Q--C-LNVFDH-----HNYVTCVQFNPIDDNYFISGSID----- 349 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~-----~--~-~~~~~~-----~~~v~~l~~~p~~~~~l~s~s~d----- 349 (645)
.....+++.+++ |+.++.....++.|.... + . +..+.. ......++|.| ++.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 345778888888 555555443344454321 1 1 122221 34477899999 88876655421
Q ss_pred --------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe
Q 006424 350 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 350 --------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~ 388 (645)
|.|.-+|..+++...+...-.....++|+|+|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555665555444333334456789999888766533
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.39 E-value=9.3 Score=41.58 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=58.9
Q ss_pred CCcEEEEecCCCeEEEEecC--CC------------------------------cEE-EEEEeeCCCCEEEEEeCC----
Q 006424 307 DKTVRMWQVGCNQCLNVFDH--HN------------------------------YVT-CVQFNPIDDNYFISGSID---- 349 (645)
Q Consensus 307 dg~I~iwd~~~~~~~~~~~~--~~------------------------------~v~-~l~~~p~~~~~l~s~s~d---- 349 (645)
+|.|..+|.++|+.+-.+.. .. .++ .+++.| ..++++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~ 258 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW 258 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence 67888889888887765531 00 111 235566 45566555421
Q ss_pred -C-----------cEEEEeCCCCcEEEee---ccC-------CCeEEEEEccCCC---EEEEEecCCeEEEEEecCCce
Q 006424 350 -G-----------KVRIWGVCEKRVVDWA---DVR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 350 -g-----------~i~vwd~~~~~~~~~~---~~~-------~~v~~l~~sp~g~---~l~~g~~dg~i~iwd~~~~~~ 403 (645)
+ .|.-.|++++++.-.. .|. ....-+.+..+|+ .++.+..+|.+++.|..+++.
T Consensus 259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2 5777788888876422 221 1122233334666 778899999999999988765
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.25 E-value=2.9 Score=45.85 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=99.9
Q ss_pred eEEEEeCC------CcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEe
Q 006424 300 YLLSCSMD------KTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW 365 (645)
Q Consensus 300 ~l~s~s~d------g~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~ 365 (645)
.++.|+.+ ..+..+|..+++..... .....-.+++.. ++.+.++|+.| .++..||.++++-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55666666 46888898877544433 233344555555 57888999988 3588899888775443
Q ss_pred eccCCCeEEEEEc-cCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 366 ADVRDVISAICYI-PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 366 ~~~~~~v~~l~~s-p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
......-...... -+|...++|+.|| ++..||..+............ ......+.+ +| .+.++|+.
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-----r~~~gv~~~--~g-~iYi~GG~ 436 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-----RSGHGVAVL--GG-KLYIIGGG 436 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-----eeeeEEEEE--CC-EEEEEcCc
Confidence 3322221222211 2678888899887 467788776665332100000 011111222 33 67778876
Q ss_pred CC------eEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCCC
Q 006424 440 DS------KLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC 494 (645)
Q Consensus 440 dg------~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~~ 494 (645)
++ .+..||..+..-.... ....... +++ .-++...+.||.|+ +|..||..+.+
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 54 4566775432211111 1111111 122 23677888888776 36777776654
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=2.7 Score=40.25 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=72.6
Q ss_pred CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc-EEEEeCCCCcEEE-e--eccCCCeEEEEEccCCCEEEEEec----
Q 006424 318 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSI---- 389 (645)
Q Consensus 318 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~-~--~~~~~~v~~l~~sp~g~~l~~g~~---- 389 (645)
|+++...........++|+|....-++.+-.-|+ ..++|..+.+... . .......-.=.|||||.+|+..-.
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 5566666556666778888866667777766665 5788887755332 1 111222223479999999987644
Q ss_pred -CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 390 -TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 390 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
.|.|-+||.+..-...-.+ ..++-....+.|.+|| ..++.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~------~t~GiGpHev~lm~DG-rtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEF------STHGIGPHEVTLMADG-RTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceeccc------ccCCcCcceeEEecCC-cEEEEeC
Confidence 3789999998554433222 2334556678999998 5555543
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.12 E-value=1.5 Score=46.34 Aligned_cols=155 Identities=9% Similarity=0.140 Sum_probs=85.6
Q ss_pred CcEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC----CCEEEEEecCCeEEEEEecC
Q 006424 328 NYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPD----GKGFIVGSITGTCHFYKASG 400 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~~g~~dg~i~iwd~~~ 400 (645)
.++..++|. ||+.++-.. .+|.+++=|- ...+.-..|..++|.|- ...+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889997 566554432 1233322221 12334456899999984 33566666788999999863
Q ss_pred CceeeeEEeeccc-cccCCCC--eEEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEE
Q 006424 401 NDLKLEKVDFHDR-KKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHI 476 (645)
Q Consensus 401 ~~~~~~~~~~~~~-~~~~~~~--i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l 476 (645)
......+....+. .....-+ -..+.|+|.. ..|++-.....-.+++.+ +..+........+.|.+.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2222111111110 0000111 2356799985 555555544443445544 222222223467889999999999987
Q ss_pred EEEe-CCccEEEEeCC
Q 006424 477 ISIG-DDCRVYVWNYD 491 (645)
Q Consensus 477 ~t~s-~dg~I~iwd~~ 491 (645)
+.+- +.=.-+|||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 7653 34456888743
No 399
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.08 E-value=1.9 Score=36.50 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=71.1
Q ss_pred EEcCCC-eEEEEeCCCcEEEEecCC--------CeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEeCCCC
Q 006424 294 AWSNSN-YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 294 ~~s~~~-~l~s~s~dg~I~iwd~~~--------~~~~~~~~~~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
.|.... .|+.++.-|.|.|++... ...+..+.....|++++--+. ..+.|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 444333 688888889999998753 334566677788888876552 345677776 567999999998
Q ss_pred cEEEeeccCCCeEEEEEcc----CCCEEEEEecCCeEEEEEecCC
Q 006424 361 RVVDWADVRDVISAICYIP----DGKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp----~g~~l~~g~~dg~i~iwd~~~~ 401 (645)
.-+......+.++++.+-. ....+++| .+-.|.-||....
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 8887778888888888743 23344443 3444555554443
No 400
>PHA03098 kelch-like protein; Provisional
Probab=94.06 E-value=3.2 Score=45.52 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=88.3
Q ss_pred CeEEEEeCCC------cEEEEecCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEe
Q 006424 299 NYLLSCSMDK------TVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDW 365 (645)
Q Consensus 299 ~~l~s~s~dg------~I~iwd~~~~~~~~~~~~--~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~ 365 (645)
..++.|+.++ .+..||..+++....-.. ...-.+++. - ++.+++.||.+ ..+..||..+++-...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 3556666542 577888877765432221 111112222 2 67788888865 3477888877664443
Q ss_pred eccCCC--eEEEEEccCCCEEEEEecC------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 366 ADVRDV--ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 366 ~~~~~~--v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
.....+ -.+++ .-+++..+.|+.+ ..+..||..+....... ..... ... .++... ++ .+++.|
T Consensus 374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~----r~~-~~~~~~-~~-~iyv~G 444 (534)
T PHA03098 374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPIS----HYG-GCAIYH-DG-KIYVIG 444 (534)
T ss_pred CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCcc----ccC-ceEEEE-CC-EEEEEC
Confidence 222111 11222 2356666666632 35788888766543211 01110 011 122222 33 566666
Q ss_pred ECC--------CeEEEEECCccee-eEeecC-CCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424 438 SED--------SKLRILDGVDVIH-KFKGLP-KSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 493 (645)
Q Consensus 438 s~d--------g~I~iwd~~~~~~-~~~~~~-~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~ 493 (645)
+.+ ..+.+||..+..- ...... .......+. .+++.++.||.+ ..|.+||..+.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 543 2378888653211 111100 111111222 267777777654 46777777655
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.03 E-value=6.3 Score=38.26 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=91.3
Q ss_pred cEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEE-ecCCcee
Q 006424 329 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK 404 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd-~~~~~~~ 404 (645)
.+...++++ +++.++... ....++++.......... ....+..-.|++++...++...+...+++. .......
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999 787766555 334455555433322222 334788889999987777766666666664 2233222
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE--CCCeEEEEECC---cc-e----eeEee-cCCCCCeEEEEEecCC
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-I----HKFKG-LPKSGSQMSASFTTTG 473 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s--~dg~I~iwd~~---~~-~----~~~~~-~~~~~~i~~v~~sp~~ 473 (645)
......... ...|+.+.+||||.+..+... .++.|.+--+. .. . ..... ......+..+.|.+++
T Consensus 102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 222222221 127999999999954444442 34667665422 11 0 11111 1234678999999999
Q ss_pred CEEEEEeCCc-cEEE-EeCCCC
Q 006424 474 KHIISIGDDC-RVYV-WNYDEL 493 (645)
Q Consensus 474 ~~l~t~s~dg-~I~i-wd~~~~ 493 (645)
.+++.+...+ .+.. .....+
T Consensus 178 ~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred EEEEEeCCCCCceeEEEEccCC
Confidence 8887776543 3443 444443
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.93 E-value=1.8 Score=44.38 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCCcEEEEecCCCeEEEEecCC---CcEEEEEEeeC-CCCE-EEEEeCCCcEEEEeC-CCCc-----EEEeec-------
Q 006424 306 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD------- 367 (645)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~~p~-~~~~-l~s~s~dg~i~vwd~-~~~~-----~~~~~~------- 367 (645)
...++.+||+.+.+.++++... ..+..+.|.+. +..+ ++.+...++|..|-- ..++ ++.+..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999999999998743 34567777651 2223 444444556655543 3332 222211
Q ss_pred ---c-------CCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeee
Q 006424 368 ---V-------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 368 ---~-------~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~ 406 (645)
. ..-|+.|.+|.|.++|++++ ..|.++.||+.....+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 1 34578999999999998876 589999999987665544
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.54 E-value=7.7 Score=40.44 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=91.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-----EEEeeccCCCeEEEEEcc----CC-CEEEEEecCCeEEEEEecCCcee----
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP----DG-KGFIVGSITGTCHFYKASGNDLK---- 404 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~v~~l~~sp----~g-~~l~~g~~dg~i~iwd~~~~~~~---- 404 (645)
+...+++||..|.++||+...+. ++--...+.+|..+..-+ .. ..||+ -.-..+.+|.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45689999999999999986533 333445667888777543 22 34444 56778888888432211
Q ss_pred --ee-EEeeccccccCCCCeEEEEEcC----CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424 405 --LE-KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 405 --~~-~~~~~~~~~~~~~~i~~i~~s~----~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~ 477 (645)
.. ...+.... .....+++.-| .|..++.+-+.||.+.+|+-+...-..... .---...++|.+....++
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEEE
Confidence 01 11111111 12233333333 224688899999999999976543222221 122233567888899999
Q ss_pred EEeCCccEEEEeCCC
Q 006424 478 SIGDDCRVYVWNYDE 492 (645)
Q Consensus 478 t~s~dg~I~iwd~~~ 492 (645)
+++.+..+..|.+..
T Consensus 191 t~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 191 TASSSWTLECYKYQD 205 (418)
T ss_pred EecCceeEEEecHHH
Confidence 999999999998754
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.50 E-value=9.7 Score=38.67 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCeEEEEEcCCC------CcEEEEEECCCeEEEEECCccee---eEee-cCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424 419 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDVIH---KFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVY 486 (645)
Q Consensus 419 ~~i~~i~~s~~g------~~~l~~~s~dg~I~iwd~~~~~~---~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~ 486 (645)
..++.+.|.... ..++++.-..+.|....+..... .... ......+..+++.|||.+.++.+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 456667766431 14555555566777776542211 1111 22344799999999999999888888875
No 405
>PHA02713 hypothetical protein; Provisional
Probab=93.50 E-value=7.7 Score=42.59 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEeeccCCCeE-EEEEcc
Q 006424 309 TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVIS-AICYIP 379 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~v~-~l~~sp 379 (645)
.+..||..+++....-. ....-.+++.. ++.+++.|+.+ ..+..||..++.-........+-. .....-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 56778887665433222 11111223332 67777888754 347889988776544332221111 111223
Q ss_pred CCCEEEEEecCC-----eEEEEEecCCce
Q 006424 380 DGKGFIVGSITG-----TCHFYKASGNDL 403 (645)
Q Consensus 380 ~g~~l~~g~~dg-----~i~iwd~~~~~~ 403 (645)
+|+..++|+.++ .+..||..+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 677778887654 478899887654
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.42 E-value=9 Score=38.07 Aligned_cols=190 Identities=9% Similarity=0.034 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-E
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-V 363 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~ 363 (645)
...++.|..+..+++| ..+ +.+...+.|+.-..+. .+.....+.... ++ ....++..|.|+.-. +.++. .
T Consensus 63 ~l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEES-STTSSEE
T ss_pred eEEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEeC-CCCCCee
Confidence 3566777654444444 344 3333334444333322 223334444444 33 333344455544322 23332 1
Q ss_pred -EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424 364 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 442 (645)
Q Consensus 364 -~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~ 442 (645)
........+..+.-+++|++++++.......-||......... .+....+|.++.|.|++ .+.+ ..+.|.
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~ 208 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ 208 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence 2344557788888999999999887666666777654333221 11123789999999997 4444 448999
Q ss_pred EEEEECCcceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 443 LRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 443 I~iwd~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
|+.=+.......+.. ....-.+..++|.+++...++|+. |.+. ...+.++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGk 263 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGK 263 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTS
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCc
Confidence 998873322222221 123345899999998888877664 4333 3556664
No 407
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.20 E-value=9.6 Score=37.75 Aligned_cols=166 Identities=11% Similarity=0.146 Sum_probs=94.5
Q ss_pred cEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCC----CEEEEEe-CCCcEEEEeCCCCcEEEeecc--------
Q 006424 309 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISGS-IDGKVRIWGVCEKRVVDWADV-------- 368 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~----~~l~s~s-~dg~i~vwd~~~~~~~~~~~~-------- 368 (645)
.|.+||+.+++.++.+. ..+.+..+.+...++ .+++.+. ..+.|.|+|+.+++..++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999888774 345678888876332 2333333 345799999999876554322
Q ss_pred ------------CCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCcee-----ee-----EEeeccccccCCCCeEE
Q 006424 369 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLK-----LE-----KVDFHDRKKTSGNKITG 423 (645)
Q Consensus 369 ------------~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~-----~~-----~~~~~~~~~~~~~~i~~ 423 (645)
.+.+..++.+| +|+.|+-+...+. ++|.+.+..+. .. .+...+. .......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 12255556555 5556665544332 23333211110 00 0001111 1135667
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCc-----ceeeEeecCC-CCCeEEEEEec--CCCEEEEE
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK-SGSQMSASFTT--TGKHIISI 479 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~-----~~~~~~~~~~-~~~i~~v~~sp--~~~~l~t~ 479 (645)
++++++| .++++--..+.|..|+... ....+..... -..+.++.+.+ +|.+.+.+
T Consensus 191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8888987 8888888999999999775 3333333222 45778888888 66655554
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.11 E-value=8.7 Score=37.00 Aligned_cols=184 Identities=8% Similarity=0.091 Sum_probs=101.9
Q ss_pred CeEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424 289 DVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 363 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 363 (645)
-...+.|.+++ .+-+.+.-| .|+.+|+.+++......... --..++.. ++.+....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 34567775666 555666665 79999999999877665332 23344554 4455555667899999999987776
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424 364 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 443 (645)
Q Consensus 364 ~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I 443 (645)
........=..++ .+++.|+.+.....++++|..+.... ..+...... ..-..++-+.|. +| ...|=.=....|
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-~~i~V~~~g-~pv~~LNELE~i-~G-~IyANVW~td~I 197 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-RTIQVTDNG-RPVSNLNELEYI-NG-KIYANVWQTDRI 197 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE-EEEE-EETT-EE---EEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceE-EEEEEEECC-EECCCcEeEEEE-cC-EEEEEeCCCCeE
Confidence 6555555556666 57888888888889999998765543 233322210 011234445554 22 333333333444
Q ss_pred EEEECC-----------cceeeEee----cCCCCCeEEEEEecCCCEEEEEe
Q 006424 444 RILDGV-----------DVIHKFKG----LPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 444 ~iwd~~-----------~~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
...|.. ........ .....-.++++++|..+.+...|
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444433 22111111 11245679999998876655544
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.06 E-value=9.2 Score=37.12 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=85.0
Q ss_pred CeEEEEEcCCC-eEEEEe-CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe-CCCCc--EE
Q 006424 289 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV 363 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd-~~~~~--~~ 363 (645)
.+...+.++++ .++... .++.-.+|-...+...........+..-.|++ ++...+....+...+++. ...+. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68888999987 444433 23333444333333333332334778889999 777777766666667763 33332 22
Q ss_pred E--eeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCcee--eeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 364 D--WADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 364 ~--~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
. .......|.++.++|||..++... .++.|.+--+.....- ................++.+.|.+++ .+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEE
Confidence 2 222223899999999999888766 3467776655321111 11111111111123678999999997 55554
Q ss_pred EEC
Q 006424 437 TSE 439 (645)
Q Consensus 437 ~s~ 439 (645)
+..
T Consensus 183 ~~~ 185 (253)
T PF10647_consen 183 GRS 185 (253)
T ss_pred eCC
Confidence 443
No 410
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.05 E-value=16 Score=39.82 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=108.0
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCC--cEE----------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT----------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~v~----------~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
++.++.++.++.|.-.|..+|+.+-.+.... .+. .+++ .+..++.++.|+.|..+|.++++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 5688888888999999999999887775321 111 1222 235677788899999999999988753
Q ss_pred eccCCC--eEEEEEcc--CCCEEEEEec------CCeEEEEEecCCceeeeEEeecccc---------------------
Q 006424 366 ADVRDV--ISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK--------------------- 414 (645)
Q Consensus 366 ~~~~~~--v~~l~~sp--~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~--------------------- 414 (645)
...... -..+.-+| .+..++++.. +|.|.-+|..+++..-.........
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 332110 01111122 1234555543 6889999998877644321111100
Q ss_pred ----ccCCCCeEEEEEcCCCCcEEEEEECC-----C-----------eEEEEECCcceee--EeecCCC-------CCeE
Q 006424 415 ----KTSGNKITGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIHK--FKGLPKS-------GSQM 465 (645)
Q Consensus 415 ----~~~~~~i~~i~~s~~g~~~l~~~s~d-----g-----------~I~iwd~~~~~~~--~~~~~~~-------~~i~ 465 (645)
......-..+++.|.. .+++.+... + .|.-.|.++.... ++...|. ....
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0000111234566653 455555422 2 3444444433222 2222221 1112
Q ss_pred EEEEecCCC---EEEEEeCCccEEEEeCCCCCc
Q 006424 466 SASFTTTGK---HIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 466 ~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~ 495 (645)
-+.+..+|+ .++.++.+|.+++.|..+++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 223334665 788999999999999999875
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.78 E-value=4.5 Score=44.19 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=70.9
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee--ccCCCeEEEEEc--cCCCEEEEEecCCeEEEEEec-----CC
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYI--PDGKGFIVGSITGTCHFYKAS-----GN 401 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~v~~l~~s--p~g~~l~~g~~dg~i~iwd~~-----~~ 401 (645)
.-+.-+. -++..++-+....+.|||.+.+.+.... ...+.|..+.|. |+|+.+++.+..+.|.+|.-. ..
T Consensus 33 ~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 33 SLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred ceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3333443 3444444444567999999988765433 447889999985 588888888889999888542 11
Q ss_pred c---eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 402 D---LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 402 ~---~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
. .+...+..... ...+|.+..|.++| .+++|+ ++.+.|+|
T Consensus 112 ~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 112 GPSWAPIRKIDISSH---TPHPIGDSIWLKDG--TLVVGS-GNQLFVFD 154 (631)
T ss_pred CcccceeEEEEeecC---CCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence 1 12233333322 13678999999998 444444 45788887
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.58 E-value=3.1 Score=46.69 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=53.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEecC---------Cce--eeeEEeecc--ccccCCCCeEEEEEcCCC--CcE
Q 006424 369 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDL--KLEKVDFHD--RKKTSGNKITGIQFSRDE--SQR 433 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~---------~~~--~~~~~~~~~--~~~~~~~~i~~i~~s~~g--~~~ 433 (645)
.-.|..+.++|+|++++..+..|.+.+.=.+. +.. ....+.+.. ........|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34588999999999999988876544432221 111 111121111 112334678899999973 378
Q ss_pred EEEEECCCeEEEEECC
Q 006424 434 IMITSEDSKLRILDGV 449 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~ 449 (645)
|++-+.|+++|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999976
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.52 E-value=6.6 Score=40.60 Aligned_cols=148 Identities=10% Similarity=0.112 Sum_probs=75.6
Q ss_pred CcEEEEEEeeCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc---EEEeeccCCCeEEEEEccCCCEEEEEecC
Q 006424 328 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KR---VVDWADVRDVISAICYIPDGKGFIVGSIT 390 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s-----------~dg-~i~vwd~~~--~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~d 390 (645)
.....++|.+ +++++++-. ..+ .|.+++-.. ++ ...+...-...+.+++.++| +++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 3467788888 787766642 123 676665432 22 22333334456889999888 5555544
Q ss_pred CeEEEEEecCCcee---eeEE--eeccccccCCCCeEEEEEcCCCCcEEEEEECC-------------------CeEEEE
Q 006424 391 GTCHFYKASGNDLK---LEKV--DFHDRKKTSGNKITGIQFSRDESQRIMITSED-------------------SKLRIL 446 (645)
Q Consensus 391 g~i~iwd~~~~~~~---~~~~--~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-------------------g~I~iw 446 (645)
...++.|....... .+.+ .+......+......+.|.|+| .+.++-+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 43334454332111 1111 1111101113457789999998 444433311 334444
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
+........... .......++|+|+|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 443222222121 223456889999998877644
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.21 E-value=2.5 Score=43.80 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-------EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 339 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 339 ~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
+.++++ .|+....++-.|+..|+++..-.....+ -+.|.|..+ .-++|-.+..|.-.|.+.....+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 445444 3444556777788888887754444445 677777432 2345666666666676544322221111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
..- .......|..-..+| ++++++..|.|++||.-.....-....-...|..+..+.+|+++++.+ ...+.+-|+
T Consensus 557 KdY--~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 557 KDY--KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred hhc--cccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 110 011334444444454 999999999999999432222222333566889999999999887766 456666676
Q ss_pred C
Q 006424 491 D 491 (645)
Q Consensus 491 ~ 491 (645)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 415
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.09 E-value=0.51 Score=31.04 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=26.6
Q ss_pred CcEEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q 006424 201 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS 231 (645)
Q Consensus 201 ~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~ 231 (645)
|+|.+|.|||+. .+|+-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999985
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.91 E-value=18 Score=37.72 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=38.3
Q ss_pred CcEEEEEEeeC----------CCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc
Q 006424 328 NYVTCVQFNPI----------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 379 (645)
Q Consensus 328 ~~v~~l~~~p~----------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp 379 (645)
..|+++.+-|. +...+++|..+|.|++|......+....-|..+|..+.+..
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 57888877663 35678999999999999986655555555677777777643
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.74 E-value=28 Score=39.58 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=105.1
Q ss_pred eEEEEeCCCcEEEEecCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCcEE
Q 006424 300 YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVV 363 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--------------g~i~vwd~~~~~~~ 363 (645)
.++++.. +.+++--++.-+. +++.........+++.+ ....+++.+.. ..++++|-.+-+..
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 3444443 4566666543322 23344445566667765 34444433321 23677777776665
Q ss_pred EeeccC-----CCeEEEEEccC-CCEEEEEec----------CCeEEEEEecC-CceeeeEEeeccccccCCCCeEEEEE
Q 006424 364 DWADVR-----DVISAICYIPD-GKGFIVGSI----------TGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 364 ~~~~~~-----~~v~~l~~sp~-g~~l~~g~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
...... ..+.++.|..| +.++++|+. .|.|.+|.... +.... ..-.. -.+.+.++..
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~--v~e~~----v~Gav~aL~~ 837 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL--VAETV----VKGAVYALVE 837 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee--eeeee----eccceeehhh
Confidence 543322 23455558777 778888863 57888888876 22211 11111 1244555443
Q ss_pred cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
-. | +++| +-...|++|+..+.........+..++..+...-.|..++.|..=+.+.+-.++..+
T Consensus 838 fn-g-kllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 838 FN-G-KLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred hC-C-eEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 33 2 3443 445689999876543333333467788889998899999999888888777666543
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=91.72 E-value=9.3 Score=41.13 Aligned_cols=103 Identities=8% Similarity=0.076 Sum_probs=56.4
Q ss_pred eEEEEeCCC-----cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEeCCCCcEEEeeccCC
Q 006424 300 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD 370 (645)
Q Consensus 300 ~l~s~s~dg-----~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~ 370 (645)
.++.||.++ ++..||..+++....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+++-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 556676543 56778887765443322 1111112222 2 67777888754 358888887765544333322
Q ss_pred CeEE-EEEccCCCEEEEEecCC---eEEEEEecCCcee
Q 006424 371 VISA-ICYIPDGKGFIVGSITG---TCHFYKASGNDLK 404 (645)
Q Consensus 371 ~v~~-l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~ 404 (645)
+... ....-+|+..++|+.++ .+..||..+....
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 2211 11223677777777553 4677887766543
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.70 E-value=11 Score=41.83 Aligned_cols=110 Identities=12% Similarity=0.149 Sum_probs=74.7
Q ss_pred cCeEEEEEc---CCCeEEEEeCCCcEEEEecCC-------C-------------eEEEEecCCCcEEEEEEe--eCCCCE
Q 006424 288 GDVLDLAWS---NSNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNY 342 (645)
Q Consensus 288 ~~V~~l~~s---~~~~l~s~s~dg~I~iwd~~~-------~-------------~~~~~~~~~~~v~~l~~~--p~~~~~ 342 (645)
..|+.+... ....|+.|..||.|.+|.+++ . ++-..+.....+++++++ . ..++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceE
Confidence 345555443 234899999999999996521 1 012223456689999998 6 6778
Q ss_pred EEEEeCCCcEEEEeCCC--CcEEE--eeccCCCeEEEEEccCC---C---EEEEEecCCeEEEEEe
Q 006424 343 FISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA 398 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~--~~~~~--~~~~~~~v~~l~~sp~g---~---~l~~g~~dg~i~iwd~ 398 (645)
+|+++....|.||-... .+... ...+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888885543 22111 22466778999997743 2 7778889999999888
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.56 E-value=0.062 Score=58.57 Aligned_cols=118 Identities=11% Similarity=0.075 Sum_probs=65.7
Q ss_pred eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCcee---eeEEeeccccccCCCCeEEEEEcC---CCCcEEEEEE
Q 006424 366 ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK---LEKVDFHDRKKTSGNKITGIQFSR---DESQRIMITS 438 (645)
Q Consensus 366 ~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~s~---~g~~~l~~~s 438 (645)
.+..+.+-.+.|-. +...+. ..-|.+.+||+.--.-. ...+..... .+..+.-+.|+| +. .++..+-
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p---~gs~~~~V~wcp~~~~~-~~ic~~~ 202 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP---YGSDPQLVSWCPIAVNK-VYICYGL 202 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc---CCCCcceeeeccccccc-ceeeecc
Confidence 34455565666532 111111 33467888887532111 111111111 123445556655 43 5777777
Q ss_pred CCCeEEEEECCcce-eeEeecCCCCCeEEE-----------EEecCCCEEEEEeCCccEEEEeCC
Q 006424 439 EDSKLRILDGVDVI-HKFKGLPKSGSQMSA-----------SFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 439 ~dg~I~iwd~~~~~-~~~~~~~~~~~i~~v-----------~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.++.|++.+..+.. ..+.. |...++.+ ..||||..+++++.||.+++|.+.
T Consensus 203 ~~~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 88899887755322 23333 44444443 368999999999999999988753
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.51 E-value=0.61 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.8
Q ss_pred CcEEEEEEeeCCC--CEEEEEeCCCcEEEEeCCC
Q 006424 328 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 328 ~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~ 359 (645)
+.++++.|+|..+ ++|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998455 6888888889999999985
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=24 Score=38.77 Aligned_cols=183 Identities=13% Similarity=0.260 Sum_probs=90.2
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE--ec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD---HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~--~~---~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
+..+..+.-..+.+..+.|+.+..|+....+|++++|++. |..+.. .+ ....|..+.+.. +|=.+.+ .+|.
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~GVavlt--~~g~ 148 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-NGVAVLT--VSGQ 148 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-CceEEEe--cCCc
Confidence 3444444333448889999988899999999999999985 333333 21 223355555544 4433333 3455
Q ss_pred EEEE-eCCCCcEEEeecc---CCCeEEEEEccCCC---EEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 352 VRIW-GVCEKRVVDWADV---RDVISAICYIPDGK---GFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 352 i~vw-d~~~~~~~~~~~~---~~~v~~l~~sp~g~---~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
+.+- +............ ...-+|-...+++. .++-.. ..| ..++-..........+.. ....+..
T Consensus 149 v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~------~~~~~~k 221 (829)
T KOG2280|consen 149 VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW------PNSSVVK 221 (829)
T ss_pred EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC------CCceEEE
Confidence 4443 3433333332221 11112222222221 111110 000 011111111111110100 1256888
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT 472 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~ 472 (645)
+..||+. ++|+.-...|.|.+-+.. +....+....+. +...++|.-+
T Consensus 222 i~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 222 ISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred EEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 9999996 799999999999988754 444444432222 2235666443
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=4 Score=44.50 Aligned_cols=198 Identities=14% Similarity=0.143 Sum_probs=100.3
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW- 365 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~- 365 (645)
+...++..+|....=..+.--.|+|+++. |+.+...- ....+..+.|+. ...|++...+|++++|++........
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccc
Confidence 33445555554311111333468888875 66655543 233788999984 66778888999999999876544331
Q ss_pred ---eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-
Q 006424 366 ---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS- 441 (645)
Q Consensus 366 ---~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg- 441 (645)
......|..+.+..+| +++-..+|.+.+-+-........ ..... ....+-+|-...+++.+......-+-
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~---~~diP-~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK---MPDIP-YNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh---CCCCC-CccCCCcceeEecCCCcceeEEeechh
Confidence 2223345555555555 55555566555433222211111 11100 00111122222222111111111110
Q ss_pred -eEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 442 -KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 442 -~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
...++.... ..+........+.+..+..||+.++|+--..+|.|.+-+.+..+
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 001111111 11111122234678889999999999999999999998887654
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=91.26 E-value=12 Score=38.05 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=62.1
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 361 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 361 (645)
...++++.+.+++.++..+..|.+++=..+.+..-.... ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence 457888899888865666677776543344443322221 123578888988 666555 455676553 344444
Q ss_pred EEEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006424 362 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397 (645)
Q Consensus 362 ~~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd 397 (645)
.-.. .......+.+.|..+++.+++ +..|.|.-|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 3222 122345777887766666554 4567766554
No 425
>PRK10115 protease 2; Provisional
Probab=91.22 E-value=30 Score=39.07 Aligned_cols=194 Identities=9% Similarity=0.094 Sum_probs=89.3
Q ss_pred EEEEEcCCC--eEEEEeCC-----CcEEEEecCCC--eEEEEecC-CCcEEEEEEeeCCCCEEEEEeC---CCcEEEEeC
Q 006424 291 LDLAWSNSN--YLLSCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSI---DGKVRIWGV 357 (645)
Q Consensus 291 ~~l~~s~~~--~l~s~s~d-----g~I~iwd~~~~--~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~ 357 (645)
..++|.+++ .+++.-.+ ..|+.+++.++ +....+.. .....-..+.+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458998775 34443322 36888888877 33334432 2222222233326666554443 357888884
Q ss_pred C--CCcEEEeeccC-CCeEEEEEccCCCEEEEEecC--CeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 358 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 358 ~--~~~~~~~~~~~-~~v~~l~~sp~g~~l~~g~~d--g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
. .+......... .....+. + .+..+..-+.. ...++. ++.... ....+ +... ....+..+.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~l-~~~~---~~~~i~~~~~~~~- 326 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEEL-IPPR---ENIMLEGFTLFTD- 326 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc-cCeEE-ECCC---CCCEEEEEEEECC-
Confidence 3 33322222222 2222222 2 23444443332 233333 333211 11111 1110 1246777888744
Q ss_pred CcEEEEEECCCeEEEE--ECCc-ceeeEeecCCCCCeEEEEEe--cCCC-EEEEEeC---CccEEEEeCCCCC
Q 006424 431 SQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDELC 494 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~i~~v~~s--p~~~-~l~t~s~---dg~I~iwd~~~~~ 494 (645)
.++++...++.-+++ +... ....+.. .....+..+.++ +++. ++++.++ -+.++.+|+.++.
T Consensus 327 -~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 327 -WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 577777777765555 4321 1222211 112223333344 3433 4444443 4788888887654
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.99 E-value=6.9 Score=42.80 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec-CCCCCeEEEEEe--cCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFT--TTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~i~~v~~s--p~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
..+-+.-+.-+ ...++.+....+.|||.+.....+... ...+.|..+.|. |+|+.+++.|-...|.++--......
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444443 344444445689999988666555442 357889999984 68999999999999999864321111
Q ss_pred CCcc-cCCcce--eeeeecCCcEEEEecCCCCccccccCCC
Q 006424 497 SSKQ-KNSVRS--CEHFFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 497 ~~~~-~~~~~~--~~~~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
.... -..... ...+.+ .++....|.++|..++..+..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~-h~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTP-HPIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred cCCcccceeEEEEeecCCC-CCccceeEecCCeEEEEeCCE
Confidence 0000 001111 111111 346688999999988866553
No 427
>PHA03098 kelch-like protein; Provisional
Probab=90.95 E-value=11 Score=41.25 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=53.8
Q ss_pred eEEEEeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEee
Q 006424 300 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 300 ~l~s~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~ 366 (645)
.++.||.+ ..+..||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+..||..+++-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55666654 357778887665432211 11111122222 57777777732 35889998876654432
Q ss_pred ccCCC--eEEEEEccCCCEEEEEecC--------CeEEEEEecCCcee
Q 006424 367 DVRDV--ISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLK 404 (645)
Q Consensus 367 ~~~~~--v~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~ 404 (645)
....+ -.++ ...++..++.|+.+ ..+..||..+....
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 22111 1122 22356666666543 23788888776553
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.73 E-value=33 Score=38.68 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=47.5
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCcEEEEecC----------CCeE--E-EEe---------cCCCcEEEEEEeeC--CCC
Q 006424 287 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----------CNQC--L-NVF---------DHHNYVTCVQFNPI--DDN 341 (645)
Q Consensus 287 ~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~----------~~~~--~-~~~---------~~~~~v~~l~~~p~--~~~ 341 (645)
...|..+..+++| .++-.|..| |.|-.+. .|+. . +++ .....|..+.|+|. ++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4578889999998 555555544 4444331 1111 1 111 23457899999994 257
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 006424 342 YFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~ 359 (645)
.|++-..|+++++||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 888888999999999965
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.61 E-value=14 Score=34.23 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=78.0
Q ss_pred CEEEEEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecC---C---eEEEEE---ec-CCceeeeEE
Q 006424 341 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT---G---TCHFYK---AS-GNDLKLEKV 408 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g---~i~iwd---~~-~~~~~~~~~ 408 (645)
+.|+.+...+.|.+|++.+ .+.......-+.|..+.++..|+++++--.+ . .+++|- .. ....+.. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-V 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-E
Confidence 5555556668899999984 3344455556889999999999999986432 2 556652 21 1111111 1
Q ss_pred eeccc-----------------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----eEee-------cC
Q 006424 409 DFHDR-----------------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKG-------LP 459 (645)
Q Consensus 409 ~~~~~-----------------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~-------~~ 459 (645)
..-++ ......++.+++..|-.++ |+.|+ ++.+.+|.+..... .+-. +.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 11110 0001246678888886433 44444 45788887542221 0111 11
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
..-....+++ -+.|+|..+ +-.+++..+
T Consensus 186 ~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 1222445555 366787775 556666654
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.52 E-value=18 Score=35.36 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=110.7
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecC------CCeE-EEEec------CCCcEEEEEEeeCCCC------------E
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y 342 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~------~~~~-~~~~~------~~~~v~~l~~~p~~~~------------~ 342 (645)
.-+.|+++|.+ .-++....+...+||.. ..+. +-.+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45788999987 55566667889999986 1222 22221 234677888875 222 3
Q ss_pred EEEEeCCCcEEEEeCCCC------cEEEeecc-CCCe-EEEEEcc--CCCEEEEE-ecCCeEEEEEecCCceeeeEEeec
Q 006424 343 FISGSIDGKVRIWGVCEK------RVVDWADV-RDVI-SAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~------~~~~~~~~-~~~v-~~l~~sp--~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
++.+++||+|.-|...-. ..+.+... ...| ..+++.. .+.+|+.+ -..++|.+||-.-...... -.+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence 677889999999985322 22222211 2333 3445443 34555554 4578888887653322110 0011
Q ss_pred cccccCCCCeEEEE------------EcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEec------C
Q 006424 412 DRKKTSGNKITGIQ------------FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T 472 (645)
Q Consensus 412 ~~~~~~~~~i~~i~------------~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp------~ 472 (645)
.........-..|+ -.++. ..=+.+..-|.|.+||.. +.++++.....-...+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00000001111111 11111 112223334789999976 5555565544455567777755 4
Q ss_pred CCEEEEEeCCccEEEEeCCCCC
Q 006424 473 GKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 473 ~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+.+|+--=.||+|..||..++.
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 5666665569999999998775
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.42 E-value=37 Score=38.66 Aligned_cols=156 Identities=11% Similarity=0.080 Sum_probs=87.7
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
....+..+-..++.|+-... ..|++++-. +....+... ..++....+.+...+++++.++.+...++........ .
T Consensus 450 ~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~-~ 525 (1096)
T KOG1897|consen 450 DEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV-S 525 (1096)
T ss_pred cCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeee-e
Confidence 33444444434555444432 457887755 333333333 3334444445556788888778877777765552111 1
Q ss_pred eeccccccCCCCeEEEEEcCC--CCc---EEEEEECCCeEEEEECC-cc-eee---EeecCCCCCeEEEEEecCCCEEEE
Q 006424 409 DFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILDGV-DV-IHK---FKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~--g~~---~l~~~s~dg~I~iwd~~-~~-~~~---~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
...-...|.|+.++|- +++ +++.|..+..+.+.-.- +. ... +.+..-...|.-..|-.|..+|.+
T Consensus 526 -----~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv 600 (1096)
T KOG1897|consen 526 -----HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLV 600 (1096)
T ss_pred -----eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEE
Confidence 1111367899999875 333 88889888766655322 11 111 111112234555566667889999
Q ss_pred EeCCccEEEEeCCCC
Q 006424 479 IGDDCRVYVWNYDEL 493 (645)
Q Consensus 479 ~s~dg~I~iwd~~~~ 493 (645)
+..||.+.-|.++..
T Consensus 601 algdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 601 ALGDGALLYFVLDIN 615 (1096)
T ss_pred EcCCceEEEEEEEcc
Confidence 999999887766544
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.12 E-value=11 Score=41.74 Aligned_cols=119 Identities=10% Similarity=0.110 Sum_probs=72.8
Q ss_pred CeEEEEEcc--CCCEEEEEecCCeEEEEEecCCce-------eee----EEeecc-ccccCCCCeEEEEEc--CCCCcEE
Q 006424 371 VISAICYIP--DGKGFIVGSITGTCHFYKASGNDL-------KLE----KVDFHD-RKKTSGNKITGIQFS--RDESQRI 434 (645)
Q Consensus 371 ~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~-------~~~----~~~~~~-~~~~~~~~i~~i~~s--~~g~~~l 434 (645)
.|+.|.... +...|+++..||.|.+|.++.-.. ... ...... -....+..+.+++++ ... +++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 355555443 445888999999999997631100 000 000000 001123577888887 553 788
Q ss_pred EEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCC---C---EEEEEeCCccEEEEeC
Q 006424 435 MITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG---K---HIISIGDDCRVYVWNY 490 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~---~---~l~t~s~dg~I~iwd~ 490 (645)
|+++....|.||-... .......+.+...|-+++|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888886432 11111123366788899996643 2 7888889999999888
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=21 Score=34.68 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=115.0
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 363 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 363 (645)
.+-+..+.++. .+.+.+..+.-++|.|+.+...-.. +...+.-.++.. .|++..++..|.-+.+.|+.+...-
T Consensus 86 ~~l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence 34455556653 4666777778899999976544333 333355566655 6889999887777888998764422
Q ss_pred E---ee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 364 D---WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 364 ~---~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
. .. .....-..++. .|++-.++..|+-+.+.|+.+...+...-.... +..+.++..+++- -+++ -.
T Consensus 162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-----g~g~~sv~vsdnr--~y~v-vy 231 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-----GPGTYSVSVSDNR--AYLV-VY 231 (370)
T ss_pred eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-----CCceEEEEecCCe--eEEE-Ec
Confidence 2 21 22222344554 477888889999999999988776554332222 2367777777762 3333 33
Q ss_pred CCeEEEEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 440 DSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 440 dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+--+.+-|..... ..+-......++..-.+.-.+++......+.-+-+-|+.+..
T Consensus 232 ~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 232 DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 3446666655433 222222222222221333356677776667777777877654
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.44 E-value=0.2 Score=54.85 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=72.3
Q ss_pred eeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecC--CCeEEEEe-----c-CCCcEEEEEEeeC--CCCEEEEEeCC
Q 006424 282 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF-----D-HHNYVTCVQFNPI--DDNYFISGSID 349 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~--~~~~~~~~-----~-~~~~v~~l~~~p~--~~~~l~s~s~d 349 (645)
.++|..+.|-.+.|...+ .+. -.-|.+.|||++ .|+....+ . ....+.-+.|.|. +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 355778888888885422 222 333678899875 34332222 1 2334455555541 44566677778
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEE-----------EEccCCCEEEEEecCCeEEEEEec
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAI-----------CYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l-----------~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
+++++.........-+.+|...+..+ ..+|||..++.++.||.+++|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 88888877654433233354443332 368999999999999999999875
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.06 E-value=4.6 Score=41.88 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=84.2
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC-------CCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCC
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDV 371 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~-------~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~ 371 (645)
.+..|+....++--|++.|+.+........| -+.|.|. +.+.|+ |-.+..|.-.|.+- +..+........
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhc
Confidence 4456777778888899999999988866656 6777771 223344 44455566566553 322222222223
Q ss_pred eEEEEEcc----CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 372 ISAICYIP----DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 372 v~~l~~sp----~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
.+.-.|+. ...++|+|+..|.|++||--+...... + +..+..|..+..+.+| .++++.+. ..+-+-|
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKta---l----P~lG~aIk~idvta~G-k~ilaTCk-~yllL~d 630 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTA---L----PGLGDAIKHIDVTANG-KHILATCK-NYLLLTD 630 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhc---C----cccccceeeeEeecCC-cEEEEeec-ceEEEEe
Confidence 33223332 344999999999999999755443222 1 1224678899999998 55555543 3565666
Q ss_pred C
Q 006424 448 G 448 (645)
Q Consensus 448 ~ 448 (645)
+
T Consensus 631 ~ 631 (776)
T COG5167 631 V 631 (776)
T ss_pred c
Confidence 4
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.65 E-value=2 Score=40.59 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred EccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-------cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 377 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 377 ~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
+..++.++++-+.+|.+++||+.+.+.......+..... .....|..+.++.+| .-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccc
Confidence 445788999999999999999998776544322211111 245678888888887 4455444 5778888743
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=88.58 E-value=25 Score=37.81 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=53.6
Q ss_pred CC-eEEEEeCC--CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCcEEEeeccC
Q 006424 298 SN-YLLSCSMD--KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVR 369 (645)
Q Consensus 298 ~~-~l~s~s~d--g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~ 369 (645)
++ ..+.|+.+ .++..||..+++-...-. ....-.+++.. ++.+.+.|+.++ .+..||.++.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 34 45566653 457888876654433222 11111122222 678888887653 4778888776654432221
Q ss_pred CCeE-EEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 370 DVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 370 ~~v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
.+.. .....-+|+..+.| |.+.+||..+....
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 1111 11122356666665 45778888776553
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.79 E-value=4.6 Score=38.16 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------e--------ccCCCeEEEEEccCCCEEEEEecCC
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A--------DVRDVISAICYIPDGKGFIVGSITG 391 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~--------~~~~~v~~l~~sp~g~~l~~g~~dg 391 (645)
..++..+.. .++++++.+.+|.+++||+.+++.... . .....|..+.++.+|.-+++- .+|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence 344444443 678899999999999999998775431 1 344567788888777665544 457
Q ss_pred eEEEEEecCCc
Q 006424 392 TCHFYKASGND 402 (645)
Q Consensus 392 ~i~iwd~~~~~ 402 (645)
..+.|+..-..
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 77888766443
No 439
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.77 E-value=33 Score=36.59 Aligned_cols=149 Identities=13% Similarity=0.218 Sum_probs=79.2
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 364 (645)
..+|..+.+.-.|.+..|+.|| +..||..+++.++.-. ....|..+.-+- ...+.+|+.+| +++.+.++.+...
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--qg~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--QGRLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--cCcEEEEeccc-eEEEchhhccccc
Confidence 4678888888788888888887 5667777777766543 224566655543 34567777665 7888877633322
Q ss_pred ee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424 365 WA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 442 (645)
Q Consensus 365 ~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~ 442 (645)
.. -....|..+.-..+| .+..|+..|..+. ..............+ ...+.|.++....+| -+-+++.++.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~----l~~S~vnsL~~D~dG--sLWv~t~~gi 311 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMH----LGVSTVNSLWLDTDG--SLWVGTYGGI 311 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccC----CccccccceeeccCC--CEeeeccCce
Confidence 11 112233333323333 5666666654432 222121111111111 012455566666665 3556666665
Q ss_pred EEEEE
Q 006424 443 LRILD 447 (645)
Q Consensus 443 I~iwd 447 (645)
+++-+
T Consensus 312 v~~~~ 316 (671)
T COG3292 312 VRYLT 316 (671)
T ss_pred EEEec
Confidence 55543
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.67 E-value=13 Score=37.87 Aligned_cols=110 Identities=17% Similarity=0.264 Sum_probs=57.2
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC---CCcEEEEEECC------C
Q 006424 371 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S 441 (645)
Q Consensus 371 ~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~---g~~~l~~~s~d------g 441 (645)
..++|+|.|+|+.++ +...|.|.+++ .........................++++|+ +..+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 467899999987655 56699999999 3333211111111222223467889999994 21344443321 2
Q ss_pred --eEEEEECCc-------ceeeEee----cCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 442 --KLRILDGVD-------VIHKFKG----LPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 442 --~I~iwd~~~-------~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
.|.-|.... ....+.. .........+.|.|||.+.++.++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 333332211 1111111 1234456779999999877776654
No 441
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.62 E-value=34 Score=34.56 Aligned_cols=104 Identities=9% Similarity=0.146 Sum_probs=55.2
Q ss_pred CCeEEEEeCC-----CcEEEEecCCCeE---EEEec---CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 006424 298 SNYLLSCSMD-----KTVRMWQVGCNQC---LNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR 361 (645)
Q Consensus 298 ~~~l~s~s~d-----g~I~iwd~~~~~~---~~~~~---~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~ 361 (645)
+..++.|+.+ ..+..+|+.+.+. ..... ....-.+++.. ++.+++.|+.. ..+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 3455666654 3566777766553 12221 11111222232 56777777642 358889988776
Q ss_pred EEEeeccC--CCeEEEEEccCCCEEEEEecCC----eEEEEEecCCce
Q 006424 362 VVDWADVR--DVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL 403 (645)
Q Consensus 362 ~~~~~~~~--~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~ 403 (645)
-....... ......+...+++..+.|+.++ .+..||..+...
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 55443211 1222233334677777777654 346788877654
No 442
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.62 E-value=44 Score=37.07 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=51.7
Q ss_pred eEEEEEccCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 372 ISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 372 v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
-..++|-|+|..+++-..|| .+.++..++-..---... ......+...+|+-.. .+......+.+++|
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-----~~~dEk~~~~~wn~~s--~vlav~~~n~~~lw 321 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-----VGCDEKAFLENWNLLS--TVLAVAEGNLLKLW 321 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-----CCchhhhhhhhhhHHH--HHHHHhhcceEEEE
Confidence 34588999999999876555 355554433221100000 0112345566776652 34455567789999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCC
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
-..+..--++....-..+.-+.|+|..
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeecccc
Confidence 866533333322233345567777754
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.56 E-value=9 Score=39.87 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=38.5
Q ss_pred cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 006424 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 233 (645)
Q Consensus 188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~ 233 (645)
.++.....|......+.+++.+|++++.|+...=|.|.++|+.++.
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 4455666788888899999999999999988888999999998753
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=16 Score=38.27 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=53.8
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEEec---------CCceeee--EEeecccccc--CCCCeEEEEEcCCC--CcEEE
Q 006424 371 VISAICYIPDGKGFIVGSITGTCHFYKAS---------GNDLKLE--KVDFHDRKKT--SGNKITGIQFSRDE--SQRIM 435 (645)
Q Consensus 371 ~v~~l~~sp~g~~l~~g~~dg~i~iwd~~---------~~~~~~~--~~~~~~~~~~--~~~~i~~i~~s~~g--~~~l~ 435 (645)
.|..+..++.|..++..+.+|.+.++=.+ .++..+. .+........ ..-.+..++|+|+. ...+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 47788899999999999999987665421 2211111 1111111100 11345567899974 46888
Q ss_pred EEECCCeEEEEECCcceeeE
Q 006424 436 ITSEDSKLRILDGVDVIHKF 455 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~~~ 455 (645)
.-+.|+.|++||.......+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 89999999999987655444
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=18 Score=37.26 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=67.4
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
..+++|.++.|++|.+.+|+--.+..|.+++....+.... ...........|....|+.+ .-++.-+..| +.+|
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~---~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE---YTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFY 137 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH---HHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEE
Confidence 3456899999999999999999999999999855443322 11111222356889999887 3455544433 5555
Q ss_pred ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEe
Q 006424 447 DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 447 d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
........++. ..+...|.-..|.++.+.+.-++
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 53322222221 23566777778888777654443
No 446
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=37 Score=33.05 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=102.6
Q ss_pred EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006424 321 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397 (645)
Q Consensus 321 ~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd 397 (645)
+......+.+..+.++ +++...+..+.-+++.|+.+...-+ .....+.-.++ .-.|++..++.-+.-+.++|
T Consensus 80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEE
Confidence 3334455667778884 5788888888889999998754322 33333334444 44688999998777788899
Q ss_pred ecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCC-CeEEEEEecCCCE
Q 006424 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSG-SQMSASFTTTGKH 475 (645)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~i~~v~~sp~~~~ 475 (645)
+.+...+...-..... ...-..++.|- ++-..+..|+-+.+.|+..+ ...+.++-..+ .+.++..+++..+
T Consensus 155 vsdpssP~lagrya~~----~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 155 VSDPSSPQLAGRYALP----GGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred CCCCCCceeeeeeccC----CCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence 9887766543322221 22234555553 46777888999999998743 33444444444 6778877777666
Q ss_pred EEEEeCCccEEEEeCCCCC
Q 006424 476 IISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 476 l~t~s~dg~I~iwd~~~~~ 494 (645)
++.. +--+.+-|..+..
T Consensus 228 ~vvy--~egvlivd~s~~s 244 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEc--ccceEEEecCCCC
Confidence 6654 3346666776654
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.53 E-value=53 Score=34.77 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=36.4
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------e-ccCCCeEEEEEccCC
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A-DVRDVISAICYIPDG 381 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~-~~~~~v~~l~~sp~g 381 (645)
...+.|+|.| ++++|++--..|.|++++..++..... . ........|+++|+-
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4578899999 887776655469999998655432211 1 135678899999874
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.43 E-value=33 Score=32.25 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=98.9
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCc--EEE----e--ecc
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKR--VVD----W--ADV 368 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~s~dg~i~vwd~~~~~--~~~----~--~~~ 368 (645)
++..-=..|.|.-||+.+++..+.--...++.++.+ |..+ .+.+.++..-.|.-||..... +.. . ...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 444444557777799887665443211122223333 2122 233333333335556633221 111 1 112
Q ss_pred CCCeEEEEEccCCCEEEEEec----------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 369 RDVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
....+.-..+|+|+++ .|.. .|.++.|-....-... ... -.--+.++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--~~~-------v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELI--WNC-------VGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceee--ehh-------ccCCccccccccCcEEEEEcc
Confidence 3456666788999984 4432 2344444433221111 000 123356889988767777888
Q ss_pred CCCeEEEEECC-------cceeeEeecC----CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 439 EDSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 439 ~dg~I~iwd~~-------~~~~~~~~~~----~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
.+-.|.-||.. +....+.... ..-..-.++++.+|++.+++-+.|+|...|..+++..
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL 246 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE
Confidence 88899888822 2222232211 1112235666778888888888999999999998643
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=10 Score=44.31 Aligned_cols=165 Identities=13% Similarity=0.236 Sum_probs=93.0
Q ss_pred ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCCeEEEE--------EccCCCEEEEEecCCeEE
Q 006424 324 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAIC--------YIPDGKGFIVGSITGTCH 394 (645)
Q Consensus 324 ~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~v~~l~--------~sp~g~~l~~g~~dg~i~ 394 (645)
+.|...-..+-+.|.=+..-++ .|..+.+|+..+ +....+.+....|..+. |-|.=+++++-+.--.|.
T Consensus 75 ~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ 152 (1311)
T KOG1900|consen 75 FSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIV 152 (1311)
T ss_pred hcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEE
Confidence 3333333344444523333333 578899999987 55555666666666554 333445555555555666
Q ss_pred EEEecCCceeeeEEeecc--ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECC------cc-------------
Q 006424 395 FYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGV------DV------------- 451 (645)
Q Consensus 395 iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~------~~------------- 451 (645)
++-+.-.........+.. .....+..|+|+....+| .++.++.||.|+-. ... .+
T Consensus 153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred EEEEEeccccCcccccccceeeecCCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 665432222111000000 011124678999988887 45555666644321 111 00
Q ss_pred eee-Eeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 452 IHK-FKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 452 ~~~-~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
... +... .+..+|..+..+...+.+.+-+..|+|.+||+..
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000 1111 3567999999999999999999999999999976
No 450
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.80 E-value=50 Score=33.89 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=80.5
Q ss_pred CcEEEEecC--CCeEEEEec--------CCCcEEEEEEe--eCCCC-EEEEEeCCCcEEEEeCC---CC----cEEEeec
Q 006424 308 KTVRMWQVG--CNQCLNVFD--------HHNYVTCVQFN--PIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWAD 367 (645)
Q Consensus 308 g~I~iwd~~--~~~~~~~~~--------~~~~v~~l~~~--p~~~~-~l~s~s~dg~i~vwd~~---~~----~~~~~~~ 367 (645)
.+|++|.+. ++.. ..+. ....++.+|+. |.++. +.++...+|.+..|.+. .+ +.++...
T Consensus 127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 469999775 3433 2221 11246667764 43444 56667788988888764 23 3455566
Q ss_pred cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEc--CCCCcEEEEEEC-CCeE
Q 006424 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE-DSKL 443 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~s~-dg~I 443 (645)
....+..+........|+++-++.-|.-|+......... .+.... .......+-.+++. .++..+|++++. +++.
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 677889999998888999999998888888764332211 121111 11123556677764 344345555554 6789
Q ss_pred EEEECC
Q 006424 444 RILDGV 449 (645)
Q Consensus 444 ~iwd~~ 449 (645)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999965
No 451
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.28 E-value=37 Score=31.91 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=90.7
Q ss_pred CeEEEEeCCCcEEEEecC--CCeEEEEe------cCCCcEEEEEEeeCCCCEEEEEeCC---------CcEEEEeCCCCc
Q 006424 299 NYLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVCEKR 361 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~--~~~~~~~~------~~~~~v~~l~~~p~~~~~l~s~s~d---------g~i~vwd~~~~~ 361 (645)
.+.+.++..-.|.-||.. .-....++ ......+.-..+| +|++++-.-.| |.++.|-.. .+
T Consensus 72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~ 149 (310)
T KOG4499|consen 72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ 149 (310)
T ss_pred eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CC
Confidence 455566665566667743 22333332 1234566667788 88874322222 334444332 22
Q ss_pred EEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEE--ecCCceeee--EEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 362 VVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYK--ASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 362 ~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
+......-.--+.++|+.+.+.+..- +.+-.|.-|| ..++..... .+.+........-..-.++...+| .+.++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va 228 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA 228 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence 22222223344678888877766554 4556776677 444443222 122221111111112234455566 77888
Q ss_pred EECCCeEEEEECCcceeeEeecCCCCCeEEEEEe
Q 006424 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 470 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~s 470 (645)
.-..++|...|..+........-....|++++|.
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8888999999977654444444467889999995
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.06 E-value=26 Score=36.11 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCCEEEEEecCCeEEEEEecCCceee-eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cce--ee
Q 006424 380 DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVI--HK 454 (645)
Q Consensus 380 ~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~--~~ 454 (645)
|.+..+.+...|.+.=|-.+...... ..+.... .++|.++.|++|+ +.+++--.|..|.+++.. +.. ..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH
Confidence 33334444445555556555433211 1222222 3699999999997 899999999999999853 111 11
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.........|.+..|+.+ .-+|..++. -+-+|-+...
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pe 142 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPE 142 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchh
Confidence 122224556899999876 455555543 3666766554
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.08 E-value=56 Score=33.08 Aligned_cols=147 Identities=17% Similarity=0.246 Sum_probs=81.4
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCc------EEEEeCCC--C---cE-----EEeeccCC--------CeEEEEEccCCCE
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE--K---RV-----VDWADVRD--------VISAICYIPDGKG 383 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~------i~vwd~~~--~---~~-----~~~~~~~~--------~v~~l~~sp~g~~ 383 (645)
+....+.+.| ++..+++.+.+|. +..+++.. + .+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567788876 5556666677777 65555543 1 11 11111111 3347788677777
Q ss_pred EEEEecC------CeEEEEEecCCceeeeEEeecc---------ccccCCCCeEEEEEcCCCCcEEEEEEC-----CC--
Q 006424 384 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS-- 441 (645)
Q Consensus 384 l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~i~~i~~s~~g~~~l~~~s~-----dg-- 441 (645)
+++.-.+ ..|.-++... .. ...+..+. ........+-+++++|+| +.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G-~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDG-RV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCC-cc-cceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence 7666556 6777777663 22 22221111 122335678899999998 55555433 22
Q ss_pred -------eEEEE--ECCc---ceeeEeecC-------CCCCeEEEEEecCCCEEEE
Q 006424 442 -------KLRIL--DGVD---VIHKFKGLP-------KSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 442 -------~I~iw--d~~~---~~~~~~~~~-------~~~~i~~v~~sp~~~~l~t 478 (645)
.++++ |... ....+.... ....+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 14554 4332 123333321 3567888999999987765
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=21 Score=42.01 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=28.5
Q ss_pred cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~ 402 (645)
.......++|+|.-..++.|+..|.+++|-...-.
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 34456778999999999999999999999765443
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.56 E-value=32 Score=29.29 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=73.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424 204 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 283 (645)
Q Consensus 204 ~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (645)
..-.|.....-|++++.-|.|.|++.......... ....+..+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------------------~~~~i~~L 44 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------------------QDSDISFL 44 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------------------------ccCceeEE
Confidence 44567767778999999999999987652211000 01223333
Q ss_pred ccCccCeEEEEEc---CC--C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEeCCCcEEE
Q 006424 284 HGHKGDVLDLAWS---NS--N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRI 354 (645)
Q Consensus 284 ~~h~~~V~~l~~s---~~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s~dg~i~v 354 (645)
. -...|++++-. |+ . .|+.|+. ..+..||++.+.-+..-...+.|+++.+-.. ...++++|+ +..|.-
T Consensus 45 N-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~G 121 (136)
T PF14781_consen 45 N-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQG 121 (136)
T ss_pred E-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEE
Confidence 2 44566666543 22 2 5555554 6899999988877666566677888877431 233444444 677888
Q ss_pred EeCCCCcEE
Q 006424 355 WGVCEKRVV 363 (645)
Q Consensus 355 wd~~~~~~~ 363 (645)
||....+..
T Consensus 122 fd~~G~e~f 130 (136)
T PF14781_consen 122 FDYEGNEIF 130 (136)
T ss_pred eCCCCcEEE
Confidence 887665543
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.35 E-value=65 Score=32.62 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCe------EEEEEecCCcee---ee---EEeeccccc----cCCCCeEEEEEcCCCCcE
Q 006424 370 DVISAICYIPDGKGFIVGSITGT------CHFYKASGNDLK---LE---KVDFHDRKK----TSGNKITGIQFSRDESQR 433 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~~dg~------i~iwd~~~~~~~---~~---~~~~~~~~~----~~~~~i~~i~~s~~g~~~ 433 (645)
+.+..+.+.+++..+++.+.+|. +..+++...... .. ...+..... ......-+|++.++| .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45778888866666666676776 555555431111 11 111111100 001123367886665 66
Q ss_pred EEEEECC------CeEEEEECC-cceeeE-------------eecCCCCCeEEEEEecCCCEEEEEe
Q 006424 434 IMITSED------SKLRILDGV-DVIHKF-------------KGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 434 l~~~s~d------g~I~iwd~~-~~~~~~-------------~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
+++.-.+ ..|+.++.. .....+ .........-+++++|+|+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 6666666 788888854 111222 2223456788999999999776654
No 457
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.09 E-value=1.1e+02 Score=35.05 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=45.4
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNP-IDDNYFISGSI----------DGKVRI 354 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~-------------~l~~~p-~~~~~l~s~s~----------dg~i~v 354 (645)
+.++.++.|+.+.-.|.++|+....+...+.|. .+.-.| ..++.+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 478889999999999999999988776443331 011111 02345666643 688999
Q ss_pred EeCCCCcEEE
Q 006424 355 WGVCEKRVVD 364 (645)
Q Consensus 355 wd~~~~~~~~ 364 (645)
+|.++++++-
T Consensus 341 ~Da~TGkl~W 350 (764)
T TIGR03074 341 FDVNTGALVW 350 (764)
T ss_pred EECCCCcEee
Confidence 9999998764
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.54 E-value=19 Score=39.27 Aligned_cols=73 Identities=12% Similarity=0.292 Sum_probs=49.9
Q ss_pred ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 324 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 324 ~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
......++++.-+| .+..++.++.||.|++|+....+...+-....+-..+.|...| +++.+.|..+.-|.-.
T Consensus 11 ~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred ccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 33455678888899 8999999999999999998655443333333344455666555 6666667776666544
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.82 E-value=9.9 Score=38.97 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=66.8
Q ss_pred eEEEEeCCCcEEEE-ecCCC-eE----EEEecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCe
Q 006424 300 YLLSCSMDKTVRMW-QVGCN-QC----LNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 372 (645)
Q Consensus 300 ~l~s~s~dg~I~iw-d~~~~-~~----~~~~~~-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v 372 (645)
.++.++.||.|.-| |++.+ ++ ++.+.. ..++..+.-.. +.+-+++-+.+|++.++.....+.+-+...-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 57888889998888 44322 21 122221 23343333222 4455788888899998887666666555555577
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 373 SAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 373 ~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
.-+++||.+.++++- ..|.++++.+++...
T Consensus 361 ~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 361 QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 789999999988764 467889998876554
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.64 E-value=87 Score=33.22 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=61.5
Q ss_pred cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-cCCCCeEEEEEcCCC---C--cEEEEEE-C-
Q 006424 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKITGIQFSRDE---S--QRIMITS-E- 439 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~s~~g---~--~~l~~~s-~- 439 (645)
.-.....|+|.|+|+.|++--..|.|++++..+..... ...+..... ........|+++|+- . .+|+... .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34567889999999766655446999999765443211 111111100 124678899999873 1 2333332 1
Q ss_pred --------CCeEEEEECC-------cceeeEeecC--CCCCeEEEEEecCCCEEEEEeCC
Q 006424 440 --------DSKLRILDGV-------DVIHKFKGLP--KSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 440 --------dg~I~iwd~~-------~~~~~~~~~~--~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
...|.-|.+. .....+.... ....-..|.|.|||.+.++.++.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2234434332 1122232211 11234578899999887776654
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=18 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEE
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIW 227 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iw 227 (645)
-.|..+..++.|..++-+|.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 358889999999999999999966554
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.23 E-value=0.39 Score=49.20 Aligned_cols=144 Identities=8% Similarity=0.095 Sum_probs=94.2
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCceeeeEEe
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
....|-| .+.-++.++.+..+..||-....... ....+....++|..+|..+++ +-..+.+.+||+.........
T Consensus 38 i~~~w~~-e~~nlavaca~tiv~~YD~agq~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE-- 113 (615)
T KOG2247|consen 38 IIHRWRP-EGHNLAVACANTIVIYYDKAGQVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE-- 113 (615)
T ss_pred ceeeEec-CCCceehhhhhhHHHhhhhhcceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh--
Confidence 3456778 45457778888889999865444333 333445567888888775554 567789999999865543211
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
..+. ..-.-+.|++.+ ..++.+...|.+.|++.+........-.|...++++++.+.+ +.+.++.|..+
T Consensus 114 ~gg~-----~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 114 SGGT-----SSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred ccCc-----chHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence 1111 111226788876 688888899999999977554444444478889999998865 44445545433
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.21 E-value=0.33 Score=49.74 Aligned_cols=137 Identities=13% Similarity=0.211 Sum_probs=93.4
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|-..-....|-|++.-++.++.+..+..||-...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq---------------------------------------------- 66 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ---------------------------------------------- 66 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcc----------------------------------------------
Confidence 3333445567777777888888888888886531
Q ss_pred CceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEE-Eec--CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~-~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
.... ...++....++|..++ .++.+-..+.+.+||+.+..... .++ +.... +.|++ ....++.+...|.+.
T Consensus 67 ~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~v 142 (615)
T KOG2247|consen 67 VILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIV 142 (615)
T ss_pred eecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceE
Confidence 1111 1234556677787665 55667778899999997543211 112 33332 78888 778888888999999
Q ss_pred EEeCCCCcEEEeec-cCCCeEEEEEccCCCEEE
Q 006424 354 IWGVCEKRVVDWAD-VRDVISAICYIPDGKGFI 385 (645)
Q Consensus 354 vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~ 385 (645)
+++..+.+.....+ |...++++++.+.+..+.
T Consensus 143 iynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 143 IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred EEeccchhhhhhhcccccceeEEEecccceeee
Confidence 99998877666555 888999999998775443
No 464
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.79 E-value=79 Score=31.57 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=91.2
Q ss_pred CccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeE----------------EEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424 286 HKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQC----------------LNVFDHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 286 h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~----------------~~~~~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
+...|+++...+. +.|+ -++....++++++..-.. ...+.+................++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 4568889988865 4444 444445599999832221 123334443444444331223445555
Q ss_pred CCCcEEEEeCCCC--cEEEee-------ccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeee--EEeecccc
Q 006424 348 IDGKVRIWGVCEK--RVVDWA-------DVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRK 414 (645)
Q Consensus 348 ~dg~i~vwd~~~~--~~~~~~-------~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 414 (645)
...+|.++..... +..... ....++..+..+++ ...+.+|+..+...++++........ ...+....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5677777654332 111111 11223333333333 55788887753445555532100000 00000000
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
. ...++...... ++ .++.+-.+. ..+-|... ....... .-.....++++. ..+|+.-+. ..|.|+++.+
T Consensus 201 ~-~~~p~~i~~l~-~~--e~Llc~~~~-~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~ 271 (302)
T smart00036 201 T-SLKPISVVQVP-RD--EFLLCYDEF-GVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKT 271 (302)
T ss_pred c-ccCceEEEEEC-CC--eEEEEECcE-EEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEcC-CcEEEEECCC
Confidence 0 00233333443 32 334343333 33333221 1111111 123345667765 467777654 5599999998
Q ss_pred CCc
Q 006424 493 LCF 495 (645)
Q Consensus 493 ~~~ 495 (645)
+..
T Consensus 272 ~~l 274 (302)
T smart00036 272 GEL 274 (302)
T ss_pred Cce
Confidence 853
No 465
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=77.63 E-value=62 Score=36.03 Aligned_cols=98 Identities=8% Similarity=0.071 Sum_probs=58.0
Q ss_pred EEEEeeCCCCEEEEEeCCC-----cEEEEeCCC---CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 332 CVQFNPIDDNYFISGSIDG-----KVRIWGVCE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
.+.|-| .|..+++-+.|| .|.++..++ |+.-...+....+...+|+-....++++ ..+.+.+|...+..+
T Consensus 251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 478999 899998877655 366665433 3332333444556677777655544443 456899998877655
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
-.+... . -..+.-+.|+|...+.++..+
T Consensus 329 YLK~e~-~------ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 329 YLKVER-Q------IPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred EEEEee-c------CCCcceeeeccccCcEEEEec
Confidence 433211 1 134667788886544444433
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=77.02 E-value=94 Score=31.99 Aligned_cols=150 Identities=11% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc----CCCE--EEEEe-cC---CeEEEEEecCCceeeeEE
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP----DGKG--FIVGS-IT---GTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp----~g~~--l~~g~-~d---g~i~iwd~~~~~~~~~~~ 408 (645)
...+++....++-+.+||+....+..+. .+.++.+..-. +|+. |++++ .+ ..|++|.+.........+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4457777778889999999888776653 23445444322 3443 44444 32 479999887533222222
Q ss_pred eeccc-cccCCCCeEEEEEc--C-CCCcEEEEEECCCeEEEEECC---c------ceeeEeecCCCCCeEEEEEecCCCE
Q 006424 409 DFHDR-KKTSGNKITGIQFS--R-DESQRIMITSEDSKLRILDGV---D------VIHKFKGLPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 409 ~~~~~-~~~~~~~i~~i~~s--~-~g~~~l~~~s~dg~I~iwd~~---~------~~~~~~~~~~~~~i~~v~~sp~~~~ 475 (645)
.-... .......+..+|+. + +|..++++...+|.+.-|.+. + .++.|.. ...+..+..+....+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccCC
Confidence 11110 00112346777764 3 354677888899988877643 1 2333433 447889999998899
Q ss_pred EEEEeCCccEEEEeCCCC
Q 006424 476 IISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 476 l~t~s~dg~I~iwd~~~~ 493 (645)
|+.+-++.-|.-|+.+..
T Consensus 222 LYvgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPE 239 (381)
T ss_dssp EEEEETTTEEEEEESSCC
T ss_pred EEEecCccEEEEEecCCC
Confidence 999999988887777643
No 467
>PRK10115 protease 2; Provisional
Probab=76.28 E-value=1.4e+02 Score=33.76 Aligned_cols=193 Identities=7% Similarity=-0.040 Sum_probs=95.5
Q ss_pred cCeEEEEEcCCC-eEEE-EeCC----CcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCC------CcEEE
Q 006424 288 GDVLDLAWSNSN-YLLS-CSMD----KTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSID------GKVRI 354 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s-~s~d----g~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~d------g~i~v 354 (645)
-.+..+.|+|++ +|+. .+.+ ..|++-|+.++..+.. +.... ..++|.+ +++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 346678889997 4443 2333 3588889988864322 22222 4589999 77766555432 35777
Q ss_pred EeCCCC--cEEE-eeccCCCeE-EEEEccCCCEEEEEec---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 355 WGVCEK--RVVD-WADVRDVIS-AICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 355 wd~~~~--~~~~-~~~~~~~v~-~l~~sp~g~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
+++.++ +-.. +........ .+..+.+++++++.+. ++.+.+++..........+..... .....+. +
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~-~ 277 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRK-----DHEYSLD-H 277 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCC-----CCEEEEE-e
Confidence 888776 2222 222222233 3334448887766544 356888885322111111111111 2222222 2
Q ss_pred CCCCcEEEEEECC-C--eEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 428 RDESQRIMITSED-S--KLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 428 ~~g~~~l~~~s~d-g--~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
..+ .+++....+ . .|...++... ...+........+..+.+. .+.++++...+|.-+++-++
T Consensus 278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 222 333333322 2 3333344321 1222222123467778887 34556666667766665544
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.23 E-value=1.5e+02 Score=34.06 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=71.9
Q ss_pred cCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCe-----EEEEe-cCC----------CcEEEEEEeeCCCCEEEEEeCC
Q 006424 288 GDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHH----------NYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 288 ~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~-----~~~~~-~~~----------~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+..+++|+|.. .||.....|...||++.... .+... ... +.-..+.|.+ +.+.|++++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-
Confidence 467789999853 89999999999999992111 11111 111 2234678887 6677777764
Q ss_pred CcEEEEeCCCCcEEE---eeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCC
Q 006424 350 GKVRIWGVCEKRVVD---WADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 350 g~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~ 401 (645)
..+.++|+.+..... .......|..+.-+|. +..|+. ....|...++...
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 679999999876533 3344567888888886 333333 2357777787763
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.18 E-value=24 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.2
Q ss_pred cCeEEEEEcCCC-------eEEEEeCCCcEEEEecC
Q 006424 288 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVG 316 (645)
Q Consensus 288 ~~V~~l~~s~~~-------~l~s~s~dg~I~iwd~~ 316 (645)
..|..++|||.| .|++.+.++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 489999999832 68889999999999765
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=76.07 E-value=1.6e+02 Score=34.19 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=96.7
Q ss_pred EEEEecCCCeEEEEecCC-----CcEEEEEEeeCCCC-EEEEEeC-----------CCcEEEEeC-CCCcEEE---eecc
Q 006424 310 VRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDN-YFISGSI-----------DGKVRIWGV-CEKRVVD---WADV 368 (645)
Q Consensus 310 I~iwd~~~~~~~~~~~~~-----~~v~~l~~~p~~~~-~l~s~s~-----------dg~i~vwd~-~~~~~~~---~~~~ 368 (645)
|++.|..+++.+..+.+. -.+..+.|+..+.. ++++|.. +|.++.|++ +.++.+. ....
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 777777777766665432 24566667653333 3333332 345777764 3344333 3344
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--
Q 006424 369 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL-- 446 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw-- 446 (645)
.+.+.+++ |...++++| ....+++||+...+...+.. ... ....|+.+++.- ..+++|...-.|.++
T Consensus 935 ~~~v~Ai~--~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e-~k~----~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 935 PGPVGAIC--PFQGRVLAG-VGRFLRLYDLGKKKLLRKCE-LKF----IPNRISSIQTYG---ARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred CccceEEe--ccCCEEEEe-cccEEEEeeCChHHHHhhhh-hcc----CceEEEEEeecc---eEEEEeeccceEEEEEE
Confidence 55565554 655555544 56799999998766533211 111 136688888764 356666655555544
Q ss_pred ECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 447 DGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+-. +....+....-...|+.+.+ -|...+|.+..=|.+.+-.+...
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence 432 33444544444556666655 35567777777788887776543
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.88 E-value=25 Score=36.17 Aligned_cols=163 Identities=7% Similarity=0.023 Sum_probs=92.0
Q ss_pred CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eecc-CC----CeE-EEEEccCCCEEEEEecCCeEEEE-
Q 006424 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RD----VIS-AICYIPDGKGFIVGSITGTCHFY- 396 (645)
Q Consensus 326 ~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~-~~----~v~-~l~~sp~g~~l~~g~~dg~i~iw- 396 (645)
....|..+-..| +++.++.-+. .++.++++.+..... +... .+ .|+ ++..-..|..+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 445677888899 9998877664 678899886644322 1111 11 122 12223356778888999988766
Q ss_pred EecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE
Q 006424 397 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI 476 (645)
Q Consensus 397 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l 476 (645)
|.+....+.. .......-....+.-+.-. +..+-+++-+..|++.++........+... --..+.-+++||++.++
T Consensus 297 dvr~~~~p~l--~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 297 DVRRDGQPHL--NHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeecCCCCcc--eeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchh
Confidence 5554333211 0000000011222222111 123456777788888877643222222111 22356678999999999
Q ss_pred EEEeCCccEEEEeCCCCCc
Q 006424 477 ISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 477 ~t~s~dg~I~iwd~~~~~~ 495 (645)
++- +.|.|+++.+++...
T Consensus 373 l~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 373 LSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eee-cCCceEEEEecCCCC
Confidence 875 468899999987643
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.82 E-value=25 Score=41.27 Aligned_cols=141 Identities=16% Similarity=0.265 Sum_probs=79.8
Q ss_pred EeCCCcEEEEecCCCeEEEEec-CCCcEEEEEE--------eeCCCCEEEEEeCCCcEEEEeCC----CCcE------EE
Q 006424 304 CSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF--------NPIDDNYFISGSIDGKVRIWGVC----EKRV------VD 364 (645)
Q Consensus 304 ~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~--------~p~~~~~l~s~s~dg~i~vwd~~----~~~~------~~ 364 (645)
.+-|..+.+|+.+++.....++ ....|..+.. .| .=+++++...--.|.++-+. ++.. ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 4567899999999866666554 3334444432 22 22233333334456666442 2211 12
Q ss_pred eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec----CCce-e-eeEEe------------eccccccCCCCeEEEEE
Q 006424 365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS----GNDL-K-LEKVD------------FHDRKKTSGNKITGIQF 426 (645)
Q Consensus 365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~----~~~~-~-~~~~~------------~~~~~~~~~~~i~~i~~ 426 (645)
+...+..|+++....+|+.+++|- || .+|.+. .+=. . ...+. +......+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 223356788999888898777665 44 344432 1000 0 00000 11111234578999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECC
Q 006424 427 SRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
...- ..+.+-++.|.|.+||+.
T Consensus 251 D~SR-~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 251 DNSR-NILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred cccc-ceeeeeccCceEEEEEcc
Confidence 8874 789999999999999965
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=73.67 E-value=1.8e+02 Score=33.57 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=96.2
Q ss_pred cCccCeEEEEEc---C--C--CeEEEEeCCCcEEEEecC------C---------CeEEEEec----CCCcEEEEEEeeC
Q 006424 285 GHKGDVLDLAWS---N--S--NYLLSCSMDKTVRMWQVG------C---------NQCLNVFD----HHNYVTCVQFNPI 338 (645)
Q Consensus 285 ~h~~~V~~l~~s---~--~--~~l~s~s~dg~I~iwd~~------~---------~~~~~~~~----~~~~v~~l~~~p~ 338 (645)
.-..+|..|+|. . + ..++..-....+.|+... . ..++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 2 1 135555555667777621 1 12233332 3346788999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC------cEEEeecc----------CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424 339 DDNYFISGSIDGKVRIWGVCEK------RVVDWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~------~~~~~~~~----------~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~ 402 (645)
+...||+....|...|||+... ........ .+.-..+.|.++.+.|++++. ..+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 8889999999999999999211 11111111 122347889888778877764 477889998765
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
....... ......|..+.-+|....+++.-+. ..|...+...
T Consensus 236 ~~~~l~~-----~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVT-----AKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ccchhcc-----CCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 4221111 1123678889888874334443332 4676667554
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.66 E-value=78 Score=29.50 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=67.5
Q ss_pred cCCCeEEEEeCCCcEEEEecC--CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---C---cEEEE-eCCCC----c-
Q 006424 296 SNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G---KVRIW-GVCEK----R- 361 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g---~i~vw-d~~~~----~- 361 (645)
...+.|+.+...+.|.+|++. ..+....|..-+.|..+.++. .|+++++--.+ . .+|+| +.+.. .
T Consensus 26 ~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 26 GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 343445444666789999987 455677777778999999999 89999986432 2 56776 22211 1
Q ss_pred -EEEee---------------------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 362 -VVDWA---------------------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 362 -~~~~~---------------------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
..+.. .....+.+++..|-..-|++|+ ++.+.+|.+.....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 11111 1234567777777544555555 56888888765443
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=73.15 E-value=1.1e+02 Score=31.07 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CcEEEEeCCCCcEEEeeccCC--CeEEEEEccCCCEEEEEecC
Q 006424 350 GKVRIWGVCEKRVVDWADVRD--VISAICYIPDGKGFIVGSIT 390 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~~g~~d 390 (645)
..+.+||..+.+-........ .........++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 458889988776554332221 11112223467777777653
No 476
>PRK13684 Ycf48-like protein; Provisional
Probab=73.11 E-value=1.1e+02 Score=31.03 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=81.6
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
...+.++.+.| ++.+++++ ..|.+..-.-..++ -.. .......++++.+.++++.+++| ..|.+.+=.......
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 45688899988 66555554 45655432112222 222 22345678999999999877765 456654322222211
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE-ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw-d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
........ ......+..+.+.+++ . +++++.+|.+..= |....-..... ..-......+.|..+++.++ .+..
T Consensus 248 W~~~~~~~--~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~ 322 (334)
T PRK13684 248 WSKPIIPE--ITNGYGYLDLAYRTPG-E-IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQR 322 (334)
T ss_pred cccccCCc--cccccceeeEEEcCCC-C-EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCC
Confidence 11111110 0012457888999876 4 4555566765542 21111111111 11223577788876666655 4568
Q ss_pred ccEEEEeC
Q 006424 483 CRVYVWNY 490 (645)
Q Consensus 483 g~I~iwd~ 490 (645)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88887763
No 477
>PLN02153 epithiospecifier protein
Probab=71.95 E-value=1.2e+02 Score=30.85 Aligned_cols=102 Identities=9% Similarity=0.113 Sum_probs=53.1
Q ss_pred CeEEEEeCC-------CcEEEEecCCCeEEEEecC---CC----cEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCC
Q 006424 299 NYLLSCSMD-------KTVRMWQVGCNQCLNVFDH---HN----YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCE 359 (645)
Q Consensus 299 ~~l~s~s~d-------g~I~iwd~~~~~~~~~~~~---~~----~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~ 359 (645)
..++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCC
Confidence 355556543 3577888877654322111 11 1122222 56777777753 3578899887
Q ss_pred CcEEEeecc-----C--CCeEEEEEccCCCEEEEEecC-----------CeEEEEEecCCcee
Q 006424 360 KRVVDWADV-----R--DVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLK 404 (645)
Q Consensus 360 ~~~~~~~~~-----~--~~v~~l~~sp~g~~l~~g~~d-----------g~i~iwd~~~~~~~ 404 (645)
.+-...... . ..-.+++ .-+++..+.|+.+ ..+.+||..+....
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 665443221 1 1112222 2356666666643 24677888766543
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.79 E-value=22 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=25.7
Q ss_pred CCeEEEEEccCC------CEEEEEecCCeEEEEEecCC
Q 006424 370 DVISAICYIPDG------KGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 370 ~~v~~l~~sp~g------~~l~~g~~dg~i~iwd~~~~ 401 (645)
..+.+++|||.| -.|++.+.+|.+.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999944 37888899999999987643
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.70 E-value=39 Score=39.84 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.++.+..+...+ -.+.+...+.+-+|+.......... .+....+++++..++++..||.+.+||...+.
T Consensus 199 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 199 YESLQVLYYSPT--KILIGFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred cccceeeeecCC--Ccceeeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEEecCCEEeeecCCCc
Confidence 445555554443 3455555666777764321111111 11111117889999999999999999999863
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.15 E-value=1e+02 Score=30.33 Aligned_cols=90 Identities=13% Similarity=0.271 Sum_probs=57.3
Q ss_pred CcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe------CCCcEEEEeCCCCcEEEeec-----cCCCeEEE
Q 006424 308 KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWAD-----VRDVISAI 375 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~-----~~~~v~~l 375 (645)
..|++||..+.+-...- +-.+.|+.+.|.. +.++++.|. ....+..||+.+.....+.. ..++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 45899998876654443 2567899999985 556666654 34568899998887655544 34778888
Q ss_pred EEcc-CCC-EEEEEe-cCCe--EEEEEe
Q 006424 376 CYIP-DGK-GFIVGS-ITGT--CHFYKA 398 (645)
Q Consensus 376 ~~sp-~g~-~l~~g~-~dg~--i~iwd~ 398 (645)
.+.. |+. ..+.|. .+|. |..||-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 7743 443 444443 3444 444543
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.72 E-value=91 Score=34.43 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=27.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 231 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~ 231 (645)
.-++++.-+|.|+-++++..||+|++|+...
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 3478888899999999999999999999865
No 482
>PLN02193 nitrile-specifier protein
Probab=70.23 E-value=1.6e+02 Score=31.61 Aligned_cols=144 Identities=6% Similarity=-0.008 Sum_probs=68.9
Q ss_pred CeEEEEeCC-------CcEEEEecCCCeEEEEec---CCC--cEE-EEEEeeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 006424 299 NYLLSCSMD-------KTVRMWQVGCNQCLNVFD---HHN--YVT-CVQFNPIDDNYFISGSID-----GKVRIWGVCEK 360 (645)
Q Consensus 299 ~~l~s~s~d-------g~I~iwd~~~~~~~~~~~---~~~--~v~-~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~ 360 (645)
..++.|+.+ ..+.+||+.+.+-...-. ... ... +++. - ++.+++.|+.+ ..+.+||+.+.
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~-~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-I-GSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-E-CCEEEEECCCCCCCCCccEEEEECCCC
Confidence 355556543 247788887765432211 111 111 1222 2 56677777754 35888999887
Q ss_pred cEEEeecc-----CCCeEEEEEccCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 361 RVVDWADV-----RDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 361 ~~~~~~~~-----~~~v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+-...... ...-.++.. -+++..+.|+.++ .+..||+.+...... ...............+.+ ++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~R~~~~~~~~--~g 329 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHC--STPGDSFSIRGGAGLEVV--QG 329 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeC--CCCCCCCCCCCCcEEEEE--CC
Confidence 65543221 111122222 3556666666543 466777776554321 111000000111112222 34
Q ss_pred CcEEEEEECC----CeEEEEECCc
Q 006424 431 SQRIMITSED----SKLRILDGVD 450 (645)
Q Consensus 431 ~~~l~~~s~d----g~I~iwd~~~ 450 (645)
.+++.++.+ ..+.+||..+
T Consensus 330 -kiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 330 -KVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred -cEEEEECCCCCccCceEEEECCC
Confidence 566666655 4688888764
No 483
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.06 E-value=93 Score=28.84 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=35.9
Q ss_pred CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 306 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
.+|.-..+|.++-+++..+...+.=+.++- ++..|+.++...+++.-|..+
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHH
Confidence 457788899999999888887777777776 444455555455666666654
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.20 E-value=1.5e+02 Score=30.92 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=76.3
Q ss_pred EEEEeeCCCCEEEEEeCCCcEE-EEeCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 332 CVQFNPIDDNYFISGSIDGKVR-IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~-vwd~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
.+..++ ++.+++.+. .|.+. -||--... ..........++++.+.+++..++++ .+|.+..-+-.........+.
T Consensus 243 ~v~~~~-dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 243 TVNRSP-DGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eEEEcC-CCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCccccccee
Confidence 344455 555555554 34333 23321111 11223335568899999998877665 556654332222111000011
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i 487 (645)
... .......+..+.|.+++ .+++++..|.+....-. +.-.... ...-......+.|.++++-+++| .+|.|.-
T Consensus 320 ~~~-~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 320 EAD-IKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred ecc-cCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 110 00112458899999885 46666677777665422 2111111 11124567889987776666654 6787765
Q ss_pred E
Q 006424 488 W 488 (645)
Q Consensus 488 w 488 (645)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.12 E-value=17 Score=23.09 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=19.9
Q ss_pred cccCcEEEEEECCCCCEEEEEe-CC--CcEEEE
Q 006424 198 AHKGCIWTLKFSPDGRYLASGG-ED--GVVRIW 227 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs-~D--g~I~iw 227 (645)
...+.-.+..|||||++|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999877554 44 665555
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.07 E-value=1.3e+02 Score=29.27 Aligned_cols=191 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
..++-.| ++..-+++...+.|--.|..+++... -.+.......+...|||..-++-+.. -|.-.|-++.......+.
T Consensus 65 ~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 65 FDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred cccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
.... ........|.+.| .+-+++...-.=++=-.+..+..+... ....-..|+..|+|..-++.-.+..|-.-|
T Consensus 143 ~~~a----~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 143 LEHA----DANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred cccC----CCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEEcc
Q ss_pred CCCCC---cCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424 490 YDELC---FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 490 ~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~ 529 (645)
-.++. .+.....+.-..-+...+.|.+....|.......+
T Consensus 217 p~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rf 259 (353)
T COG4257 217 PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRF 259 (353)
T ss_pred cccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEe
No 487
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=66.61 E-value=2.4e+02 Score=32.36 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=103.8
Q ss_pred EEEEEeCCCcEEEEeCC-CCcEEEe--------eccCCCeEEEEE--ccCCCEEEEEecC---CeEEEEEecCC----ce
Q 006424 342 YFISGSIDGKVRIWGVC-EKRVVDW--------ADVRDVISAICY--IPDGKGFIVGSIT---GTCHFYKASGN----DL 403 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~-~~~~~~~--------~~~~~~v~~l~~--sp~g~~l~~g~~d---g~i~iwd~~~~----~~ 403 (645)
-+++....|.+++|-.. +++.... ......++..++ ..+|+.+++++.+ +.|++|.+.-. ..
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 35556678999999763 2322221 123445555444 4677766666655 78888765310 00
Q ss_pred -------eeeEEeecccc--c-------------cCCCCeEEEEEcC------CCCcEEEEEEC----CCeEEEEECCcc
Q 006424 404 -------KLEKVDFHDRK--K-------------TSGNKITGIQFSR------DESQRIMITSE----DSKLRILDGVDV 451 (645)
Q Consensus 404 -------~~~~~~~~~~~--~-------------~~~~~i~~i~~s~------~g~~~l~~~s~----dg~I~iwd~~~~ 451 (645)
+.-.+...... . .....++.+.|-+ .....+++.+. ...|.-|.+++.
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 11111110000 0 0123566777765 12234444433 347888975421
Q ss_pred eeeE--------------------------eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc----cc
Q 006424 452 IHKF--------------------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK----QK 501 (645)
Q Consensus 452 ~~~~--------------------------~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~----~~ 501 (645)
...+ ........|.+++...-+.+++..-.||+|.++|-.+.+..... ..
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 1100 00112356777777777889999999999999998877533222 11
Q ss_pred CC-ccee----eeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 502 NS-VRSC----EHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 502 ~~-~~~~----~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.. +.+. ..|.......-+++||.+..++....++-
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~ 343 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGK 343 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCC
Confidence 11 1111 12222234556888998888887766654
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=66.39 E-value=70 Score=30.66 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=69.9
Q ss_pred EEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC----CcEEE---eeccCCCeEEEEEc
Q 006424 310 VRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE----KRVVD---WADVRDVISAICYI 378 (645)
Q Consensus 310 I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~----~~~~~---~~~~~~~v~~l~~s 378 (645)
-.+||+.+++..... .....+.+-.+.+ +|+++.+|+.. ..+++++... ..... .......-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357888777653322 2333444456778 89999988752 3588887654 11111 12233344455566
Q ss_pred cCCCEEEEEecCC-eEEEEEecCCceeeeEEeeccc--cccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 379 PDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 379 p~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
|||+.|++|+... +..+|.-...........+... ......--.-+...|+| ++++.+..+..|.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s~i~ 194 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGSIIY 194 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCcEEE
Confidence 8999999988774 3344443221111111111110 00011223356678887 6777777665444
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=65.63 E-value=83 Score=36.90 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=82.0
Q ss_pred eEEEEeC---------CCcEEEEecC-----CCeE-----EEE-e--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 300 YLLSCSM---------DKTVRMWQVG-----CNQC-----LNV-F--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 300 ~l~s~s~---------dg~I~iwd~~-----~~~~-----~~~-~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
+|+.|.. .|.+.++|+- .|++ ++. + +..++|..++=- +|. |+++. ...|.+|++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEcc-CcEEEEEEe
Confidence 6776642 4889999973 2322 222 2 256777776643 454 44443 367999999
Q ss_pred -CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEE
Q 006424 358 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIM 435 (645)
Q Consensus 358 -~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~-~l~ 435 (645)
+...+.-..-..-++.-....--+++++.|.--..|.+.-..........+.-.. ..-.+.++.|--+|.+ .++
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~----~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDF----EPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCC----chhhceeeeeEEcCCeeEEE
Confidence 5555543222222333333334467888887777777776665444333222111 1245778888777654 467
Q ss_pred EEECCCeEEEEE
Q 006424 436 ITSEDSKLRILD 447 (645)
Q Consensus 436 ~~s~dg~I~iwd 447 (645)
++..|+.|++|-
T Consensus 1200 vsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1200 VSDADRNIHVYM 1211 (1366)
T ss_pred EEcCCCcEEEEE
Confidence 778889998875
No 490
>PLN02153 epithiospecifier protein
Probab=65.48 E-value=1.6e+02 Score=29.88 Aligned_cols=103 Identities=9% Similarity=0.173 Sum_probs=52.7
Q ss_pred CeEEEEeCC-----CcEEEEecCCCeEEEEecC-----C-Cc-EEEEEEeeCCCCEEEEEeCC-----------CcEEEE
Q 006424 299 NYLLSCSMD-----KTVRMWQVGCNQCLNVFDH-----H-NY-VTCVQFNPIDDNYFISGSID-----------GKVRIW 355 (645)
Q Consensus 299 ~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~-----~-~~-v~~l~~~p~~~~~l~s~s~d-----------g~i~vw 355 (645)
..++.|+.+ ..+.+||..+.+-...-.. . .. -.+++. - ++++++.|+.+ ..+.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEE
Confidence 355555543 3577888877654322110 1 11 112222 2 56677777754 247788
Q ss_pred eCCCCcEEEeeccC-----CCeEEEEEccCCCEEEEEecC-------------CeEEEEEecCCcee
Q 006424 356 GVCEKRVVDWADVR-----DVISAICYIPDGKGFIVGSIT-------------GTCHFYKASGNDLK 404 (645)
Q Consensus 356 d~~~~~~~~~~~~~-----~~v~~l~~sp~g~~l~~g~~d-------------g~i~iwd~~~~~~~ 404 (645)
|..+.+-..+.... ..-.+++. -+++.++.|+.+ ..+.+||..+....
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 98876654432211 11112222 356665655432 45788888876654
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.91 E-value=2.6e+02 Score=32.11 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-------------------cCCCCCeEEEEEecCCCEEEEE
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-------------------LPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-------------------~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
..|.++....-+ ..++....||+|.++|..+....... ......+..++|||++.-++.-
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 567777777766 68999999999999995432111000 0111234568899999999999
Q ss_pred eCCccEE
Q 006424 480 GDDCRVY 486 (645)
Q Consensus 480 s~dg~I~ 486 (645)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 492
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.78 E-value=1.8e+02 Score=30.29 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=56.7
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424 372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 372 v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
...+..+++|.+++++.....++-||-...... ...... ...++.+.+.+++ .+++ .+.+|.+..-+....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~--~~~~~~-----~~~l~~v~~~~dg-~l~l-~g~~G~l~~S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQ--PHNRAS-----ARRIQNMGWRADG-GLWL-LTRGGGLYVSKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceE--EecCCC-----ccceeeeeEcCCC-CEEE-EeCCceEEEecCCCC
Confidence 344556677777766654433333433221111 111111 3568899999987 4444 446666654332211
Q ss_pred -e--eeEeec---CCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 452 -I--HKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 452 -~--~~~~~~---~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
. ..+... .....+.++.|.+++..+++| .+|.+....
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 0 022221 122458899998887766554 678776654
No 493
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=64.13 E-value=50 Score=37.64 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEe-eccCCCeEEEEEccCCCEEEE-EecCC-----eEEEEEecCCceeeeEEeecc
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV-GSITG-----TCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~~-g~~dg-----~i~iwd~~~~~~~~~~~~~~~ 412 (645)
.++.+.....+.|.+-|........+ ......+.+-.|||||+.|+- .+..+ .|++-++.+.......+....
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 33444433345888889888777666 777889999999999999987 34333 588888887665544444443
Q ss_pred ccccCCCCeEEEEEcCCCCcEEE
Q 006424 413 RKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
..|..-....+|...|+
T Consensus 399 ------aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 399 ------AAIPRWRVLENGDTVIV 415 (912)
T ss_pred ------ccccceEecCCCCeEEE
Confidence 45666666666544333
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=64.04 E-value=1.1e+02 Score=32.31 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
..|..+...+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348899998885 8999999999999999863
No 495
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.74 E-value=29 Score=22.25 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=24.4
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEE
Q 006424 301 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 335 (645)
Q Consensus 301 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~ 335 (645)
+++.-.+++|.++|..+++.+..+........++|
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 44455688999999998888887765444445544
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=63.58 E-value=1.3e+02 Score=35.45 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=63.6
Q ss_pred CccCeEEEEEcCCCeEEEEeCCCcEEEEecC-CCeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-
Q 006424 286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR- 361 (645)
Q Consensus 286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~-~~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~- 361 (645)
-+++|..++= -+|+|++|.. ..|.+|+++ ....+. -+..+-.+.++.. -.++++.|..-..|.+.-.....
T Consensus 1096 ~KGtVsavce-V~G~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~---vknlIl~gDV~ksisfl~fqeep~ 1170 (1366)
T KOG1896|consen 1096 QKGTVSAVCE-VRGHLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKV---VKNLILAGDVMKSISFLGFQEEPY 1170 (1366)
T ss_pred cccceEEEEE-eccEEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhh---hhhheehhhhhhceEEEEEccCce
Confidence 4677877763 3577777654 579999994 333221 1122222333222 34566666666666666554322
Q ss_pred EEEe---eccCCCeEEEEEccCCC--EEEEEecCCeEEEEEec
Q 006424 362 VVDW---ADVRDVISAICYIPDGK--GFIVGSITGTCHFYKAS 399 (645)
Q Consensus 362 ~~~~---~~~~~~v~~l~~sp~g~--~l~~g~~dg~i~iwd~~ 399 (645)
.+.+ ....-.++++.|--+|. +++++..+++|++|-..
T Consensus 1171 rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1171 RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 2222 22233577888877776 67888899999988665
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.41 E-value=1.6e+02 Score=29.05 Aligned_cols=97 Identities=9% Similarity=0.120 Sum_probs=60.1
Q ss_pred CcEEEEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEe------cCCeEEEEEecCCceeeeEEeecccc-ccCCCCe
Q 006424 350 GKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKI 421 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~i 421 (645)
..|++||..+.+-.... +..+.|+++.|..+.+.++.|. ....+..||+.+...... .... ..-.+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~----~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL----GGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec----CCcccccCCCcE
Confidence 45999999887766543 4567899999986666666664 345788899887665321 1100 1223678
Q ss_pred EEEEEcC-CCCcEEEEEE-C--CCeEEEEECCc
Q 006424 422 TGIQFSR-DESQRIMITS-E--DSKLRILDGVD 450 (645)
Q Consensus 422 ~~i~~s~-~g~~~l~~~s-~--dg~I~iwd~~~ 450 (645)
+.+.+.. ++.++.+.|. . +..|..||..+
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 8887753 3324554544 2 34577787553
No 498
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.30 E-value=26 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcEEEEEECC--CeEEEE
Q 006424 419 NKITGIQFSRDESQRIMITSED--SKLRIL 446 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~d--g~I~iw 446 (645)
.......|+|||..++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4567889999997777777777 766665
No 499
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=62.01 E-value=2e+02 Score=29.74 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=20.3
Q ss_pred cEEEEeCCCCcEEEeeccCC-C--eEEEEEccCCCEEEEEec
Q 006424 351 KVRIWGVCEKRVVDWADVRD-V--ISAICYIPDGKGFIVGSI 389 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~-~--v~~l~~sp~g~~l~~g~~ 389 (645)
.+.+||..+..-........ . -.++.. -+++..+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence 58889988876554332221 1 122322 25666666654
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=61.25 E-value=2.2e+02 Score=29.98 Aligned_cols=32 Identities=9% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 461 SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 461 ~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
...|..+...+..+.+++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999999999999999999999975
Done!