Query 006424
Match_columns 645
No_of_seqs 878 out of 5214
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 00:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.4E-46 4.7E-51 416.9 41.9 411 192-638 51-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 1.5E-45 5.2E-50 406.3 37.7 455 97-637 10-577 (577)
3 1nr0_A Actin interacting prote 100.0 1.9E-43 6.6E-48 391.7 36.3 380 198-640 16-567 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1E-42 3.4E-47 383.8 35.9 377 192-644 8-502 (577)
5 1vyh_C Platelet-activating fac 100.0 2.7E-42 9.1E-47 363.4 35.5 254 187-493 95-370 (410)
6 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-40 2.1E-44 394.0 38.2 451 98-639 610-1157(1249)
7 2ynn_A Coatomer subunit beta'; 100.0 4.5E-39 1.5E-43 324.5 36.9 281 191-534 4-293 (304)
8 3ow8_A WD repeat-containing pr 100.0 6.4E-39 2.2E-43 325.8 36.2 279 193-533 25-310 (321)
9 3frx_A Guanine nucleotide-bind 100.0 1.3E-38 4.5E-43 323.4 35.2 303 190-589 7-318 (319)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-40 1.3E-44 378.9 26.6 421 100-638 14-659 (902)
11 1got_B GT-beta; complex (GTP-b 100.0 6.6E-38 2.3E-42 321.3 40.4 249 190-493 45-302 (340)
12 4g56_B MGC81050 protein; prote 100.0 8.9E-39 3E-43 329.9 31.2 251 196-493 38-302 (357)
13 3ow8_A WD repeat-containing pr 100.0 2.8E-38 9.5E-43 321.1 33.1 298 88-491 17-320 (321)
14 1got_B GT-beta; complex (GTP-b 100.0 3.9E-38 1.3E-42 323.0 33.7 291 96-489 48-340 (340)
15 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-38 1.6E-42 377.5 40.0 382 194-639 609-1073(1249)
16 4gqb_B Methylosome protein 50; 100.0 2.6E-38 9.1E-43 323.9 32.2 256 197-493 27-290 (344)
17 2pbi_B Guanine nucleotide-bind 100.0 1.1E-37 3.7E-42 321.4 36.3 249 191-493 55-316 (354)
18 2oaj_A Protein SNI1; WD40 repe 100.0 7.2E-39 2.5E-43 368.2 30.2 390 196-641 13-606 (902)
19 3iz6_a 40S ribosomal protein R 100.0 5.9E-39 2E-43 334.4 25.8 299 189-589 55-376 (380)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-37 7.3E-42 318.2 36.4 253 191-493 6-284 (345)
21 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-38 1.9E-42 360.3 35.4 251 191-494 4-261 (814)
22 2xzm_R RACK1; ribosome, transl 100.0 3.7E-37 1.3E-41 316.2 37.7 309 191-589 12-341 (343)
23 1vyh_C Platelet-activating fac 100.0 4.5E-38 1.5E-42 331.1 31.6 286 97-491 102-410 (410)
24 1erj_A Transcriptional repress 100.0 3E-37 1E-41 323.0 36.0 314 198-589 62-390 (393)
25 3frx_A Guanine nucleotide-bind 100.0 5.1E-37 1.7E-41 311.7 33.2 299 91-493 5-318 (319)
26 1pgu_A Actin interacting prote 100.0 2E-36 6.9E-41 335.7 40.9 421 192-639 55-613 (615)
27 4ery_A WD repeat-containing pr 100.0 5.6E-36 1.9E-40 303.0 38.3 293 189-545 12-310 (312)
28 3iz6_a 40S ribosomal protein R 100.0 1.2E-37 4.2E-42 324.4 26.8 305 95-493 58-376 (380)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-36 1.1E-40 309.5 34.5 319 278-640 6-335 (345)
30 2pbi_B Guanine nucleotide-bind 100.0 1.5E-36 5.2E-41 312.8 32.0 295 95-489 56-354 (354)
31 1pgu_A Actin interacting prote 100.0 1.3E-36 4.4E-41 337.3 33.3 244 198-494 16-285 (615)
32 1r5m_A SIR4-interacting protei 100.0 1.9E-36 6.6E-41 319.4 32.4 280 197-533 42-350 (425)
33 2hes_X YDR267CP; beta-propelle 100.0 6.5E-36 2.2E-40 305.1 35.1 251 191-493 5-281 (330)
34 2pm9_A Protein WEB1, protein t 100.0 6.4E-37 2.2E-41 322.7 28.1 333 199-589 11-415 (416)
35 4aow_A Guanine nucleotide-bind 100.0 1.7E-35 5.7E-40 302.7 36.7 304 190-589 28-338 (340)
36 3mkq_A Coatomer beta'-subunit; 100.0 7.5E-37 2.6E-41 351.0 29.3 414 95-643 5-464 (814)
37 2pm7_B Protein transport prote 100.0 2.7E-35 9.1E-40 295.8 35.3 252 194-492 3-285 (297)
38 2xzm_R RACK1; ribosome, transl 100.0 1.3E-35 4.3E-40 304.8 33.2 296 95-493 13-341 (343)
39 4gqb_B Methylosome protein 50; 100.0 4.9E-35 1.7E-39 299.6 36.6 247 198-494 80-333 (344)
40 2ynn_A Coatomer subunit beta'; 100.0 1.4E-35 4.9E-40 298.8 31.7 289 95-492 5-302 (304)
41 1gxr_A ESG1, transducin-like e 100.0 1.1E-35 3.7E-40 303.4 29.4 319 199-639 8-336 (337)
42 2j04_B YDR362CP, TAU91; beta p 100.0 9E-36 3.1E-40 320.7 28.9 205 281-493 201-429 (524)
43 3v7d_B Cell division control p 100.0 2E-35 6.7E-40 316.5 31.3 393 120-637 21-460 (464)
44 4g56_B MGC81050 protein; prote 100.0 7.3E-35 2.5E-39 300.5 33.9 248 196-493 90-344 (357)
45 4ery_A WD repeat-containing pr 100.0 7E-35 2.4E-39 294.9 32.7 292 94-491 14-311 (312)
46 2hes_X YDR267CP; beta-propelle 100.0 3.6E-35 1.2E-39 299.5 30.7 302 95-492 6-328 (330)
47 1erj_A Transcriptional repress 100.0 2.7E-34 9.3E-39 300.6 37.7 250 198-493 121-390 (393)
48 3zwl_B Eukaryotic translation 100.0 3.4E-34 1.2E-38 296.1 37.4 239 192-484 24-282 (369)
49 3vl1_A 26S proteasome regulato 100.0 3.1E-35 1.1E-39 310.4 27.2 245 201-494 57-324 (420)
50 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-34 8E-39 298.1 32.4 251 196-492 4-274 (372)
51 3dm0_A Maltose-binding peripla 100.0 3.1E-34 1.1E-38 322.9 35.8 312 190-587 372-692 (694)
52 3jrp_A Fusion protein of prote 100.0 8.1E-35 2.8E-39 302.2 28.6 255 192-493 3-288 (379)
53 3dwl_C Actin-related protein 2 100.0 1E-35 3.5E-40 309.4 21.8 335 196-586 7-377 (377)
54 1sq9_A Antiviral protein SKI8; 100.0 1.1E-33 3.8E-38 296.0 36.6 254 192-493 8-323 (397)
55 4e54_B DNA damage-binding prot 100.0 6.9E-35 2.4E-39 309.5 27.8 253 192-493 111-388 (435)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-33 5E-38 300.2 36.4 327 191-642 109-444 (445)
57 1gxr_A ESG1, transducin-like e 100.0 5.6E-33 1.9E-37 283.3 38.9 273 197-534 48-327 (337)
58 4aow_A Guanine nucleotide-bind 100.0 1.7E-33 5.7E-38 287.9 33.4 296 94-493 29-338 (340)
59 3bg1_A Protein SEC13 homolog; 100.0 2.8E-34 9.7E-39 291.0 26.8 248 194-491 7-292 (316)
60 4a11_B DNA excision repair pro 100.0 2.8E-33 9.5E-38 293.6 34.3 350 191-639 34-404 (408)
61 4e54_B DNA damage-binding prot 100.0 3.8E-34 1.3E-38 303.7 28.0 305 279-639 111-429 (435)
62 2pm9_A Protein WEB1, protein t 100.0 4.5E-35 1.5E-39 308.6 19.9 336 286-639 11-413 (416)
63 3i2n_A WD repeat-containing pr 100.0 3.6E-33 1.2E-37 287.3 30.6 309 192-589 10-354 (357)
64 3ei3_B DNA damage-binding prot 100.0 9.9E-33 3.4E-37 287.6 34.2 292 189-545 62-380 (383)
65 3dm0_A Maltose-binding peripla 100.0 4.2E-33 1.4E-37 313.7 33.5 292 95-491 374-692 (694)
66 3gre_A Serine/threonine-protei 100.0 1.4E-34 4.9E-39 307.2 20.0 325 277-637 52-437 (437)
67 3odt_A Protein DOA1; ubiquitin 100.0 3E-32 1E-36 275.0 35.6 246 187-493 5-256 (313)
68 3k26_A Polycomb protein EED; W 100.0 2.8E-33 9.7E-38 289.0 28.0 252 195-494 13-320 (366)
69 3gre_A Serine/threonine-protei 100.0 1.7E-33 5.8E-38 298.9 27.0 329 191-585 53-437 (437)
70 1r5m_A SIR4-interacting protei 100.0 3.7E-33 1.3E-37 294.3 29.1 300 197-587 105-424 (425)
71 3ei3_B DNA damage-binding prot 100.0 1.9E-32 6.6E-37 285.4 34.1 304 278-640 64-382 (383)
72 3mmy_A MRNA export factor; mRN 100.0 3.7E-32 1.3E-36 280.7 35.6 294 189-545 28-347 (368)
73 3zwl_B Eukaryotic translation 100.0 4.4E-32 1.5E-36 280.2 34.5 306 280-640 25-346 (369)
74 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-32 1.3E-36 277.9 33.7 255 192-493 3-338 (351)
75 3vl1_A 26S proteasome regulato 100.0 2.3E-32 8E-37 288.3 31.6 286 194-535 92-410 (420)
76 3dw8_B Serine/threonine-protei 100.0 1.6E-32 5.5E-37 292.0 30.5 300 198-535 26-438 (447)
77 3jro_A Fusion protein of prote 100.0 1.2E-32 3.9E-37 312.2 30.2 254 193-494 2-287 (753)
78 1yfq_A Cell cycle arrest prote 100.0 4.6E-32 1.6E-36 277.5 29.2 279 195-536 6-315 (342)
79 1sq9_A Antiviral protein SKI8; 100.0 2.2E-32 7.5E-37 286.2 26.9 304 95-493 8-396 (397)
80 3k26_A Polycomb protein EED; W 100.0 1.8E-32 6.1E-37 283.0 25.9 245 198-491 67-365 (366)
81 4h5i_A Guanine nucleotide-exch 100.0 1.6E-31 5.3E-36 276.4 32.7 203 285-493 131-344 (365)
82 3i2n_A WD repeat-containing pr 100.0 7.3E-32 2.5E-36 277.5 29.7 249 198-493 63-354 (357)
83 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-33 1.9E-37 291.4 21.3 307 198-576 13-350 (588)
84 3odt_A Protein DOA1; ubiquitin 100.0 6.1E-31 2.1E-35 265.3 31.6 289 94-495 9-299 (313)
85 3dwl_C Actin-related protein 2 100.0 4.1E-32 1.4E-36 282.2 22.2 251 192-490 47-377 (377)
86 4aez_A CDC20, WD repeat-contai 100.0 6.2E-31 2.1E-35 275.9 30.3 284 196-589 87-381 (401)
87 3v7d_B Cell division control p 100.0 2.7E-30 9.2E-35 276.5 35.0 261 192-522 154-442 (464)
88 1k8k_C P40, ARP2/3 complex 41 100.0 8.5E-31 2.9E-35 271.3 28.3 250 192-494 44-363 (372)
89 4ggc_A P55CDC, cell division c 100.0 5.1E-30 1.7E-34 259.3 32.6 237 203-493 28-274 (318)
90 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-30 1.3E-34 273.0 32.8 281 197-589 130-415 (435)
91 2pm7_B Protein transport prote 100.0 5.1E-30 1.7E-34 257.3 31.7 251 281-545 3-283 (297)
92 4a11_B DNA excision repair pro 100.0 4.5E-31 1.5E-35 276.8 25.0 296 277-640 33-365 (408)
93 4gga_A P55CDC, cell division c 100.0 4.1E-29 1.4E-33 263.7 39.1 282 202-548 107-396 (420)
94 4aez_A CDC20, WD repeat-contai 100.0 1.3E-29 4.6E-34 265.7 35.0 241 199-495 133-383 (401)
95 2xyi_A Probable histone-bindin 100.0 5E-30 1.7E-34 271.5 31.7 258 195-493 123-411 (430)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-30 6.9E-35 272.1 28.2 255 192-493 73-343 (402)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-29 8.9E-34 267.4 35.4 275 192-536 151-430 (445)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-29 5.1E-34 265.5 32.7 275 202-531 36-331 (402)
99 4gga_A P55CDC, cell division c 100.0 2.5E-29 8.6E-34 265.4 34.3 244 195-494 142-397 (420)
100 1yfq_A Cell cycle arrest prote 100.0 4.3E-30 1.5E-34 262.8 26.8 291 283-637 7-321 (342)
101 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-30 1.2E-34 277.2 25.5 257 194-493 201-518 (524)
102 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-29 5.4E-34 258.4 28.8 298 281-589 5-338 (351)
103 3bg1_A Protein SEC13 homolog; 100.0 1.4E-29 4.7E-34 256.5 25.8 252 281-545 7-291 (316)
104 3jrp_A Fusion protein of prote 100.0 6.1E-29 2.1E-33 257.7 29.0 253 279-546 3-286 (379)
105 3vu4_A KMHSV2; beta-propeller 100.0 5.6E-29 1.9E-33 256.3 26.3 244 193-493 12-272 (355)
106 4ggc_A P55CDC, cell division c 100.0 8.8E-28 3E-32 242.8 34.4 242 196-493 63-316 (318)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.2E-28 2.8E-32 256.2 33.7 310 201-529 5-370 (450)
108 3dw8_B Serine/threonine-protei 100.0 5.1E-28 1.7E-32 257.2 29.9 291 285-585 26-443 (447)
109 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-28 9.3E-33 250.1 25.0 234 205-494 41-294 (343)
110 1p22_A F-BOX/WD-repeat protein 100.0 9.6E-28 3.3E-32 254.5 29.9 239 191-494 164-416 (435)
111 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-28 5.7E-33 257.5 22.8 268 195-533 47-350 (588)
112 3mmy_A MRNA export factor; mRN 100.0 2E-27 6.7E-32 245.2 30.2 295 277-587 29-345 (368)
113 4gq1_A NUP37; propeller, trans 100.0 5.7E-28 1.9E-32 252.4 23.0 254 196-490 85-387 (393)
114 1l0q_A Surface layer protein; 100.0 3.1E-26 1E-30 239.0 35.4 251 213-530 3-260 (391)
115 3bws_A Protein LP49; two-domai 100.0 1.8E-26 6.3E-31 244.2 33.1 275 195-531 118-418 (433)
116 3jro_A Fusion protein of prote 100.0 1E-26 3.5E-31 263.3 32.0 251 281-546 3-284 (753)
117 2xyi_A Probable histone-bindin 100.0 1.6E-26 5.6E-31 244.5 27.6 206 281-493 122-354 (430)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.3E-26 2.8E-30 240.6 32.7 248 195-492 97-391 (450)
119 3vu4_A KMHSV2; beta-propeller 99.9 6.5E-26 2.2E-30 233.4 28.7 237 277-545 9-269 (355)
120 4gq1_A NUP37; propeller, trans 99.9 1.9E-26 6.4E-31 240.9 24.2 241 285-536 87-382 (393)
121 4h5i_A Guanine nucleotide-exch 99.9 7.8E-26 2.7E-30 233.6 27.4 198 197-449 130-342 (365)
122 1l0q_A Surface layer protein; 99.9 1.4E-24 4.6E-29 226.5 34.9 245 192-494 24-277 (391)
123 3bws_A Protein LP49; two-domai 99.9 9.6E-25 3.3E-29 231.0 32.9 242 195-492 164-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 99.9 1E-25 3.5E-30 230.8 23.2 241 200-491 76-332 (343)
125 2w18_A PALB2, fancn, partner a 99.9 2.5E-24 8.6E-29 212.4 24.3 198 285-490 134-355 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-24 5.8E-29 227.5 24.7 303 201-569 63-410 (415)
127 2w18_A PALB2, fancn, partner a 99.9 1.2E-23 4E-28 207.6 23.0 215 199-448 110-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-23 8.3E-28 218.7 27.1 264 194-526 111-410 (415)
129 1nir_A Nitrite reductase; hemo 99.9 3.2E-23 1.1E-27 224.7 28.5 326 207-589 144-515 (543)
130 1k32_A Tricorn protease; prote 99.9 1.9E-23 6.4E-28 245.5 25.8 360 194-639 197-636 (1045)
131 1k32_A Tricorn protease; prote 99.9 1.4E-22 4.8E-27 238.1 30.2 367 194-586 46-500 (1045)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6.1E-23 2.1E-27 232.8 25.5 344 200-588 36-459 (741)
133 1nir_A Nitrite reductase; hemo 99.9 3.7E-21 1.3E-25 208.4 31.3 302 191-545 170-512 (543)
134 2z3z_A Dipeptidyl aminopeptida 99.9 4.7E-22 1.6E-26 224.2 23.3 284 287-589 81-436 (706)
135 1ri6_A Putative isomerase YBHE 99.9 6.6E-21 2.3E-25 194.3 29.0 249 198-491 35-307 (343)
136 1xfd_A DIP, dipeptidyl aminope 99.9 9.8E-22 3.3E-26 222.2 23.5 310 202-573 18-426 (723)
137 3u4y_A Uncharacterized protein 99.9 6.6E-21 2.2E-25 193.7 26.4 237 206-493 3-253 (331)
138 3vgz_A Uncharacterized protein 99.9 8.7E-20 3E-24 187.0 33.7 273 199-534 39-334 (353)
139 2ojh_A Uncharacterized protein 99.9 8.8E-21 3E-25 188.6 24.6 235 281-534 35-292 (297)
140 3u4y_A Uncharacterized protein 99.9 1.6E-19 5.5E-24 183.4 31.1 247 195-494 35-306 (331)
141 2ojh_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 184.2 24.4 234 195-483 36-293 (297)
142 1ri6_A Putative isomerase YBHE 99.9 2E-19 6.9E-24 183.2 30.4 238 285-533 35-296 (343)
143 3o4h_A Acylamino-acid-releasin 99.8 4.6E-20 1.6E-24 203.0 22.6 232 199-490 20-274 (582)
144 3hfq_A Uncharacterized protein 99.8 5.9E-19 2E-23 180.6 29.3 249 198-491 37-316 (347)
145 2z3z_A Dipeptidyl aminopeptida 99.8 2.6E-19 9E-24 201.7 29.1 267 200-531 81-418 (706)
146 1xfd_A DIP, dipeptidyl aminope 99.8 3.3E-19 1.1E-23 201.4 27.0 247 194-493 51-394 (723)
147 2ecf_A Dipeptidyl peptidase IV 99.8 4E-19 1.4E-23 201.4 26.8 240 201-492 109-413 (741)
148 1z68_A Fibroblast activation p 99.8 7.6E-20 2.6E-24 206.6 20.1 241 205-494 20-348 (719)
149 1pby_B Quinohemoprotein amine 99.8 8.4E-19 2.9E-23 178.1 23.7 235 202-494 35-312 (337)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 7.6E-19 2.6E-23 185.1 22.2 258 199-490 35-331 (434)
151 1pby_B Quinohemoprotein amine 99.8 1.9E-18 6.5E-23 175.5 23.9 261 213-545 2-308 (337)
152 3scy_A Hypothetical bacterial 99.8 4.2E-17 1.4E-21 167.8 33.9 247 199-491 48-336 (361)
153 3hfq_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 174.2 26.1 201 285-491 37-270 (347)
154 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-18 1.4E-22 192.7 25.4 245 202-496 18-357 (740)
155 1jmx_B Amine dehydrogenase; ox 99.8 5.3E-18 1.8E-22 173.2 23.9 235 205-493 4-326 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-17 4.8E-22 175.4 26.8 169 198-401 90-279 (434)
157 3vgz_A Uncharacterized protein 99.8 7.3E-17 2.5E-21 165.1 29.2 227 201-483 89-335 (353)
158 3pe7_A Oligogalacturonate lyas 99.8 1.7E-17 6E-22 172.3 22.7 287 194-532 24-369 (388)
159 1z68_A Fibroblast activation p 99.8 7.5E-19 2.6E-23 198.4 12.4 285 292-588 20-391 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.2E-17 1.8E-21 167.4 24.6 247 200-493 39-342 (365)
161 1q7f_A NHL, brain tumor CG1071 99.8 3.1E-15 1.1E-19 148.3 33.8 247 197-493 26-281 (286)
162 3scy_A Hypothetical bacterial 99.7 6E-15 2.1E-19 151.6 31.9 230 286-533 48-325 (361)
163 3o4h_A Acylamino-acid-releasin 99.7 2.6E-16 8.8E-21 173.0 22.7 234 196-492 59-315 (582)
164 3pe7_A Oligogalacturonate lyas 99.7 4.1E-16 1.4E-20 162.0 20.1 296 277-587 20-381 (388)
165 1jmx_B Amine dehydrogenase; ox 99.7 1.2E-15 4.2E-20 155.5 22.0 227 293-545 5-323 (349)
166 3azo_A Aminopeptidase; POP fam 99.7 4.4E-15 1.5E-19 165.8 27.1 247 193-493 16-326 (662)
167 3c5m_A Oligogalacturonate lyas 99.7 1E-15 3.5E-20 159.2 18.3 236 201-494 36-331 (396)
168 2oiz_A Aromatic amine dehydrog 99.7 2.3E-14 8E-19 147.0 27.0 249 194-493 45-335 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.6E-14 8.9E-19 147.2 26.6 199 286-491 38-290 (365)
170 3fvz_A Peptidyl-glycine alpha- 99.7 4.2E-14 1.4E-18 143.3 27.6 201 285-493 88-323 (329)
171 4a5s_A Dipeptidyl peptidase 4 99.6 6.1E-15 2.1E-19 166.7 20.8 200 288-494 17-296 (740)
172 3e5z_A Putative gluconolactona 99.6 2.2E-13 7.4E-18 135.8 29.0 239 194-493 21-287 (296)
173 2dg1_A DRP35, lactonase; beta 99.6 6E-13 2.1E-17 134.9 32.2 242 194-483 38-301 (333)
174 2dg1_A DRP35, lactonase; beta 99.6 8E-14 2.8E-18 141.4 24.2 234 201-491 6-262 (333)
175 2oiz_A Aromatic amine dehydrog 99.6 2.1E-13 7.1E-18 139.9 26.4 268 280-569 44-360 (361)
176 2xdw_A Prolyl endopeptidase; a 99.6 3.2E-13 1.1E-17 151.9 28.0 242 198-494 122-416 (710)
177 2gop_A Trilobed protease; beta 99.6 9.7E-13 3.3E-17 134.1 29.2 203 288-523 59-311 (347)
178 1rwi_B Serine/threonine-protei 99.6 4.6E-13 1.6E-17 131.2 25.7 238 202-493 25-265 (270)
179 1qks_A Cytochrome CD1 nitrite 99.6 2.9E-12 9.8E-17 138.4 31.0 323 210-589 165-539 (567)
180 3c5m_A Oligogalacturonate lyas 99.5 1.6E-13 5.6E-18 142.4 20.1 249 205-493 85-385 (396)
181 3dsm_A Uncharacterized protein 99.5 2.2E-12 7.5E-17 130.5 27.6 235 201-494 44-303 (328)
182 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-13 7.7E-18 152.7 21.4 242 198-494 118-399 (695)
183 2z2n_A Virginiamycin B lyase; 99.5 3.3E-11 1.1E-15 119.6 35.0 239 196-491 10-254 (299)
184 2gop_A Trilobed protease; beta 99.5 1.1E-12 3.7E-17 133.7 24.6 222 201-491 59-330 (347)
185 3azo_A Aminopeptidase; POP fam 99.5 3.4E-13 1.2E-17 150.5 22.3 204 286-494 128-371 (662)
186 1q7f_A NHL, brain tumor CG1071 99.5 4.3E-12 1.5E-16 125.5 27.1 239 285-545 27-278 (286)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.4E-16 123.7 30.4 246 199-493 16-300 (314)
188 3fvz_A Peptidyl-glycine alpha- 99.5 8.1E-12 2.8E-16 126.4 27.2 232 287-529 23-307 (329)
189 2xdw_A Prolyl endopeptidase; a 99.5 1.3E-11 4.3E-16 138.8 31.4 201 285-493 122-369 (710)
190 3no2_A Uncharacterized protein 99.5 1.7E-11 5.7E-16 120.4 25.5 212 211-480 4-231 (276)
191 2bkl_A Prolyl endopeptidase; m 99.4 5.1E-12 1.7E-16 141.7 23.6 195 285-491 118-348 (695)
192 3e5z_A Putative gluconolactona 99.4 1.8E-11 6.2E-16 121.7 24.1 230 278-536 18-279 (296)
193 3dsm_A Uncharacterized protein 99.4 6.5E-11 2.2E-15 119.6 28.2 222 288-532 44-285 (328)
194 2z2n_A Virginiamycin B lyase; 99.4 2.9E-10 9.8E-15 112.7 31.9 237 199-493 55-296 (299)
195 3no2_A Uncharacterized protein 99.4 3.4E-11 1.2E-15 118.2 24.4 195 296-499 3-202 (276)
196 2qc5_A Streptogramin B lactona 99.4 9.7E-10 3.3E-14 108.9 34.5 238 198-491 17-259 (300)
197 1yr2_A Prolyl oligopeptidase; 99.4 1.7E-11 5.9E-16 138.4 24.1 241 198-494 160-443 (741)
198 1qks_A Cytochrome CD1 nitrite 99.4 7.1E-10 2.4E-14 119.7 31.8 194 300-495 169-376 (567)
199 3g4e_A Regucalcin; six bladed 99.3 1.5E-09 5.2E-14 107.8 31.4 228 199-481 11-261 (297)
200 1rwi_B Serine/threonine-protei 99.3 1.9E-10 6.6E-15 112.3 24.3 221 289-529 25-249 (270)
201 1yr2_A Prolyl oligopeptidase; 99.3 2.1E-10 7.3E-15 129.4 27.8 223 286-529 161-422 (741)
202 3hrp_A Uncharacterized protein 99.3 5.5E-10 1.9E-14 116.2 28.8 239 201-490 131-408 (409)
203 1xip_A Nucleoporin NUP159; bet 99.3 2.7E-11 9.1E-16 123.3 18.2 188 202-437 39-231 (388)
204 2mad_H Methylamine dehydrogena 99.3 3.7E-09 1.3E-13 108.4 33.2 247 205-496 70-354 (373)
205 2qc5_A Streptogramin B lactona 99.3 3.3E-09 1.1E-13 105.0 30.1 234 199-490 60-298 (300)
206 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.4E-14 108.8 27.2 231 196-486 40-301 (305)
207 2ghs_A AGR_C_1268P; regucalcin 99.3 3.2E-09 1.1E-13 107.0 30.0 222 202-481 50-291 (326)
208 3iuj_A Prolyl endopeptidase; h 99.3 4.1E-10 1.4E-14 125.9 23.9 240 198-494 126-407 (693)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 6.5E-09 2.2E-13 103.8 29.5 229 283-533 13-287 (314)
210 3sjl_D Methylamine dehydrogena 99.2 2.5E-09 8.6E-14 108.4 25.2 259 206-530 38-348 (386)
211 2qe8_A Uncharacterized protein 99.2 2.1E-09 7.2E-14 109.2 24.7 245 201-489 17-318 (343)
212 3g4e_A Regucalcin; six bladed 99.2 7.8E-09 2.7E-13 102.6 27.5 224 288-532 13-260 (297)
213 3sjl_D Methylamine dehydrogena 99.2 2.6E-09 9E-14 108.2 23.2 247 205-494 82-365 (386)
214 3hrp_A Uncharacterized protein 99.2 5.1E-09 1.8E-13 108.9 25.5 203 288-494 131-356 (409)
215 1xip_A Nucleoporin NUP159; bet 99.2 4E-09 1.4E-13 107.4 22.7 133 198-386 86-230 (388)
216 2mad_H Methylamine dehydrogena 99.2 6.9E-08 2.4E-12 98.9 32.3 221 292-532 70-337 (373)
217 2ghs_A AGR_C_1268P; regucalcin 99.1 8.2E-08 2.8E-12 96.6 30.5 218 290-532 51-290 (326)
218 3c75_H MADH, methylamine dehyd 99.1 1.1E-08 3.8E-13 105.5 24.2 249 205-495 122-405 (426)
219 3dr2_A Exported gluconolactona 99.1 2.2E-08 7.5E-13 99.8 24.9 230 278-536 35-299 (305)
220 3iuj_A Prolyl endopeptidase; h 99.0 1.5E-08 5.2E-13 113.2 22.7 196 285-493 126-360 (693)
221 2ece_A 462AA long hypothetical 99.0 8.3E-08 2.8E-12 97.8 25.7 189 290-480 140-399 (462)
222 3c75_H MADH, methylamine dehyd 99.0 4.3E-08 1.5E-12 101.2 22.4 222 292-532 122-389 (426)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.5E-07 8.6E-12 95.0 26.9 185 298-495 103-299 (376)
224 1mda_H Methylamine dehydrogena 98.9 1.7E-08 5.7E-13 102.5 14.7 244 193-495 59-349 (368)
225 1fwx_A Nitrous oxide reductase 98.8 4.7E-07 1.6E-11 95.6 21.9 187 298-492 100-361 (595)
226 2qe8_A Uncharacterized protein 98.8 1.5E-06 5.1E-11 88.0 25.1 202 288-493 17-279 (343)
227 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.7E-10 78.3 29.7 197 288-494 36-240 (267)
228 2fp8_A Strictosidine synthase; 98.7 3.2E-06 1.1E-10 84.7 25.6 257 202-493 20-314 (322)
229 2iwa_A Glutamine cyclotransfer 98.7 2.8E-06 9.5E-11 81.4 23.7 209 192-450 11-237 (266)
230 4a2l_A BT_4663, two-component 98.7 1.3E-05 4.5E-10 90.9 33.3 239 203-494 175-438 (795)
231 1mda_H Methylamine dehydrogena 98.7 4.6E-08 1.6E-12 99.2 11.1 267 300-589 34-347 (368)
232 1kb0_A Quinohemoprotein alcoho 98.7 1.5E-06 5.1E-11 96.3 24.0 197 298-498 174-513 (677)
233 1yiq_A Quinohemoprotein alcoho 98.7 2.4E-06 8.2E-11 94.8 25.1 198 298-499 167-512 (689)
234 2hz6_A Endoplasmic reticulum t 98.7 6.8E-09 2.3E-13 106.4 4.3 220 211-494 8-238 (369)
235 1fwx_A Nitrous oxide reductase 98.7 6.6E-07 2.3E-11 94.5 18.6 199 289-494 135-433 (595)
236 2iwa_A Glutamine cyclotransfer 98.6 9.5E-06 3.2E-10 77.7 24.1 206 280-493 12-238 (266)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.6 7.7E-06 2.6E-10 83.8 24.9 183 298-497 143-342 (376)
238 1kb0_A Quinohemoprotein alcoho 98.6 6.1E-07 2.1E-11 99.4 17.5 193 298-497 77-351 (677)
239 1yiq_A Quinohemoprotein alcoho 98.6 1.3E-06 4.3E-11 97.0 20.1 194 298-496 70-342 (689)
240 3nok_A Glutaminyl cyclase; bet 98.6 6.9E-06 2.4E-10 77.6 21.5 194 192-437 45-253 (268)
241 2hz6_A Endoplasmic reticulum t 98.6 5.4E-09 1.9E-13 107.2 -0.5 184 298-498 9-198 (369)
242 2ece_A 462AA long hypothetical 98.6 1E-05 3.4E-10 82.6 23.4 190 297-493 93-353 (462)
243 2p4o_A Hypothetical protein; p 98.6 6.1E-05 2.1E-09 74.6 28.9 226 201-483 32-279 (306)
244 3nol_A Glutamine cyclotransfer 98.5 1.4E-05 4.9E-10 75.5 21.8 194 191-437 32-243 (262)
245 3hxj_A Pyrrolo-quinoline quino 98.5 7.4E-06 2.5E-10 82.0 21.3 186 289-493 138-325 (330)
246 1npe_A Nidogen, entactin; glyc 98.5 0.0002 6.8E-09 69.2 29.6 218 201-474 36-263 (267)
247 4a2l_A BT_4663, two-component 98.5 0.00047 1.6E-08 78.1 36.8 245 200-494 262-528 (795)
248 3nol_A Glutamine cyclotransfer 98.5 3.6E-05 1.2E-09 72.7 22.4 193 280-481 34-244 (262)
249 3mbr_X Glutamine cyclotransfer 98.4 0.00011 3.7E-09 68.9 24.3 194 192-437 11-222 (243)
250 3hxj_A Pyrrolo-quinoline quino 98.4 7.1E-06 2.4E-10 82.1 17.1 174 298-490 107-282 (330)
251 3nok_A Glutaminyl cyclase; bet 98.4 5.7E-05 1.9E-09 71.4 21.6 183 289-480 56-253 (268)
252 3v9f_A Two-component system se 98.4 0.0011 3.7E-08 74.9 36.6 284 201-493 66-393 (781)
253 3mbr_X Glutamine cyclotransfer 98.4 0.00018 6.1E-09 67.4 24.6 195 280-481 12-223 (243)
254 3v9f_A Two-component system se 98.3 0.00067 2.3E-08 76.7 33.1 243 201-494 211-480 (781)
255 2p4o_A Hypothetical protein; p 98.3 0.00031 1.1E-08 69.4 26.8 231 288-534 32-278 (306)
256 1k3i_A Galactose oxidase precu 98.3 6.9E-05 2.4E-09 82.9 24.2 204 289-494 244-499 (656)
257 3qqz_A Putative uncharacterize 98.3 0.00041 1.4E-08 65.9 26.1 206 282-490 21-251 (255)
258 2ad6_A Methanol dehydrogenase 98.2 0.00016 5.6E-09 78.1 24.0 198 298-499 160-501 (571)
259 3tc9_A Hypothetical hydrolase; 98.2 0.00049 1.7E-08 71.5 26.8 242 202-491 138-429 (430)
260 2fp8_A Strictosidine synthase; 98.2 0.00046 1.6E-08 68.8 25.3 182 288-481 19-248 (322)
261 1kv9_A Type II quinohemoprotei 98.2 4.2E-05 1.4E-09 84.5 18.7 195 298-496 66-337 (668)
262 3v65_B Low-density lipoprotein 98.2 0.0016 5.6E-08 66.5 29.2 199 287-493 115-319 (386)
263 3v64_C Agrin; beta propeller, 98.2 0.0025 8.6E-08 64.1 30.0 198 288-493 73-276 (349)
264 1ijq_A LDL receptor, low-densi 98.1 0.0055 1.9E-07 60.7 31.3 199 287-493 29-239 (316)
265 1kv9_A Type II quinohemoprotei 98.1 8.6E-05 2.9E-09 82.1 19.3 197 298-498 162-494 (668)
266 4hw6_A Hypothetical protein, I 98.1 0.0015 5.3E-08 67.8 27.4 243 202-491 140-432 (433)
267 2xe4_A Oligopeptidase B; hydro 98.0 0.00064 2.2E-08 76.3 24.6 240 198-494 170-460 (751)
268 3v64_C Agrin; beta propeller, 98.0 0.0039 1.3E-07 62.7 27.8 197 289-493 35-235 (349)
269 2xe4_A Oligopeptidase B; hydro 98.0 0.00075 2.6E-08 75.7 23.2 197 285-490 170-398 (751)
270 1ijq_A LDL receptor, low-densi 97.9 0.0043 1.5E-07 61.5 25.9 179 308-493 10-196 (316)
271 3v65_B Low-density lipoprotein 97.9 0.0047 1.6E-07 63.1 26.6 195 291-493 80-278 (386)
272 3kya_A Putative phosphatase; s 97.9 0.0059 2E-07 63.7 27.3 205 288-493 186-476 (496)
273 1w6s_A Methanol dehydrogenase 97.9 0.0016 5.6E-08 70.3 24.1 198 298-499 166-510 (599)
274 3p5b_L Low density lipoprotein 97.9 0.019 6.4E-07 58.9 30.9 201 286-494 110-322 (400)
275 3sov_A LRP-6, low-density lipo 97.9 0.011 3.7E-07 58.6 27.9 198 288-494 35-240 (318)
276 2xbg_A YCF48-like protein; pho 97.8 0.035 1.2E-06 55.1 31.0 190 287-493 79-279 (327)
277 1flg_A Protein (quinoprotein e 97.8 0.0056 1.9E-07 66.2 25.9 147 350-499 291-523 (582)
278 3qqz_A Putative uncharacterize 97.8 0.015 5.2E-07 55.0 25.4 203 194-447 20-250 (255)
279 3tc9_A Hypothetical hydrolase; 97.7 0.0014 4.8E-08 68.1 19.4 157 329-492 138-301 (430)
280 2p9w_A MAL S 1 allergenic prot 97.7 0.013 4.4E-07 57.3 24.7 204 285-492 10-265 (334)
281 2ad6_A Methanol dehydrogenase 97.7 0.0065 2.2E-07 65.5 25.1 149 298-451 115-336 (571)
282 3p5b_L Low density lipoprotein 97.7 0.025 8.7E-07 57.9 28.3 187 299-493 84-278 (400)
283 4hw6_A Hypothetical protein, I 97.7 0.0023 8E-08 66.4 20.4 155 289-449 140-303 (433)
284 2xzh_A Clathrin heavy chain 1; 97.6 0.058 2E-06 52.2 30.6 238 206-493 72-333 (365)
285 1w6s_A Methanol dehydrogenase 97.6 0.018 6E-07 62.2 25.6 146 301-451 124-343 (599)
286 3amr_A 3-phytase; beta-propell 97.6 0.035 1.2E-06 54.7 25.0 183 300-491 42-262 (355)
287 3s94_A LRP-6, low-density lipo 97.5 0.028 9.7E-07 61.0 26.5 200 287-494 39-245 (619)
288 3m0c_C LDL receptor, low-densi 97.5 0.12 4E-06 57.7 31.8 201 286-494 422-634 (791)
289 3sov_A LRP-6, low-density lipo 97.5 0.03 1E-06 55.3 24.4 179 307-493 12-198 (318)
290 1k3i_A Galactose oxidase precu 97.5 0.00091 3.1E-08 73.8 14.5 228 203-481 245-530 (656)
291 2p9w_A MAL S 1 allergenic prot 97.5 0.0066 2.2E-07 59.3 18.1 162 328-492 13-215 (334)
292 3m0c_C LDL receptor, low-densi 97.4 0.034 1.2E-06 62.0 25.9 182 306-494 402-591 (791)
293 3amr_A 3-phytase; beta-propell 97.4 0.034 1.2E-06 54.8 22.7 141 307-449 98-262 (355)
294 4a0p_A LRP6, LRP-6, low-densit 97.4 0.22 7.7E-06 54.0 37.2 190 201-398 37-235 (628)
295 2ism_A Putative oxidoreductase 97.4 0.051 1.7E-06 54.5 24.5 226 201-480 31-333 (352)
296 4a0p_A LRP6, LRP-6, low-densit 97.3 0.23 7.7E-06 54.0 30.5 196 288-494 37-239 (628)
297 1bpo_A Protein (clathrin); cla 97.3 0.18 6E-06 50.9 31.7 204 287-493 105-332 (494)
298 2xbg_A YCF48-like protein; pho 97.3 0.16 5.4E-06 50.3 28.8 193 288-490 122-320 (327)
299 3kya_A Putative phosphatase; s 97.3 0.044 1.5E-06 57.1 23.0 153 289-448 140-339 (496)
300 1flg_A Protein (quinoprotein e 97.2 0.0098 3.3E-07 64.2 18.2 85 349-439 465-549 (582)
301 2ism_A Putative oxidoreductase 97.2 0.1 3.5E-06 52.3 24.2 228 287-530 30-331 (352)
302 3sre_A PON1, serum paraoxonase 97.1 0.1 3.5E-06 52.0 23.0 150 289-447 113-295 (355)
303 3pbp_A Nucleoporin NUP82; beta 97.1 0.051 1.7E-06 54.7 20.2 148 339-488 31-208 (452)
304 3a9g_A Putative uncharacterize 97.1 0.3 1E-05 48.9 27.4 231 200-480 28-330 (354)
305 3s94_A LRP-6, low-density lipo 97.0 0.53 1.8E-05 51.0 33.2 281 201-493 84-424 (619)
306 1n7d_A LDL receptor, low-densi 96.9 0.0046 1.6E-07 68.4 12.3 199 288-494 406-616 (699)
307 3sre_A PON1, serum paraoxonase 96.9 0.42 1.4E-05 47.5 25.6 191 288-489 50-295 (355)
308 2g8s_A Glucose/sorbosone dehyd 96.8 0.44 1.5E-05 47.6 25.1 66 419-485 271-347 (353)
309 3a9g_A Putative uncharacterize 96.7 0.56 1.9E-05 46.8 26.0 225 287-528 28-326 (354)
310 3ott_A Two-component system se 96.6 1.2 4.2E-05 49.5 30.5 193 287-493 62-261 (758)
311 1n7d_A LDL receptor, low-densi 96.5 0.0081 2.8E-07 66.4 10.6 179 307-493 385-572 (699)
312 1tl2_A L10, protein (tachylect 96.4 0.053 1.8E-06 49.4 13.2 144 328-486 41-204 (236)
313 2xn4_A Kelch-like protein 2; s 96.4 0.28 9.6E-06 47.6 19.9 181 300-493 64-277 (302)
314 2vpj_A Kelch-like protein 12; 96.4 0.28 9.6E-06 47.6 19.7 182 299-493 64-279 (301)
315 3das_A Putative oxidoreductase 96.2 0.77 2.6E-05 45.5 21.8 149 327-479 31-219 (347)
316 3pbp_A Nucleoporin NUP82; beta 96.2 0.12 4.1E-06 52.1 15.6 142 300-446 34-208 (452)
317 1bpo_A Protein (clathrin); cla 96.1 1.3 4.6E-05 44.7 28.1 192 295-497 73-294 (494)
318 2xzh_A Clathrin heavy chain 1; 96.1 1.1 3.9E-05 43.3 29.2 191 296-497 75-295 (365)
319 4asc_A Kelch repeat and BTB do 96.0 1.1 3.9E-05 43.5 22.1 171 310-493 69-278 (315)
320 3ii7_A Kelch-like protein 7; p 96.0 0.96 3.3E-05 43.8 21.4 181 300-493 58-273 (306)
321 1zgk_A Kelch-like ECH-associat 95.8 0.58 2E-05 45.6 19.0 173 308-493 90-288 (308)
322 3ei3_A DNA damage-binding prot 95.8 4.1 0.00014 47.5 31.2 198 309-519 808-1025(1158)
323 1tl2_A L10, protein (tachylect 95.6 0.12 4.2E-06 47.0 11.6 101 288-394 41-157 (236)
324 1xi4_A Clathrin heavy chain; a 95.3 0.8 2.7E-05 53.3 19.6 204 287-493 105-332 (1630)
325 3ott_A Two-component system se 95.3 4.6 0.00016 44.8 30.2 190 288-491 419-625 (758)
326 3das_A Putative oxidoreductase 95.2 2.7 9.2E-05 41.5 27.9 242 196-480 27-326 (347)
327 1cru_A Protein (soluble quinop 95.2 1.1 3.7E-05 46.4 19.1 109 328-438 27-162 (454)
328 1cru_A Protein (soluble quinop 94.9 4 0.00014 42.1 28.3 32 200-231 26-57 (454)
329 2woz_A Kelch repeat and BTB do 94.8 2.7 9.2E-05 40.8 20.2 130 310-450 80-231 (318)
330 2be1_A Serine/threonine-protei 94.8 2.1 7E-05 42.1 18.6 92 305-397 64-181 (339)
331 3ei3_A DNA damage-binding prot 94.4 10 0.00034 44.3 34.5 222 288-519 514-753 (1158)
332 2uvk_A YJHT; unknown function, 94.3 1.1 3.9E-05 44.4 16.4 88 308-398 86-224 (357)
333 3s25_A Hypothetical 7-bladed b 94.2 4.3 0.00015 39.3 19.6 160 308-493 88-256 (302)
334 2g8s_A Glucose/sorbosone dehyd 94.2 1.6 5.6E-05 43.4 16.9 145 329-478 19-214 (353)
335 2vpj_A Kelch-like protein 12; 94.1 4.2 0.00014 39.0 19.5 174 308-494 31-233 (301)
336 2xn4_A Kelch-like protein 2; s 93.9 3.6 0.00012 39.5 18.5 174 308-494 30-231 (302)
337 1xi4_A Clathrin heavy chain; a 93.8 3.2 0.00011 48.5 19.8 192 296-498 74-295 (1630)
338 3ii7_A Kelch-like protein 7; p 93.8 3.6 0.00012 39.6 18.5 183 300-494 14-227 (306)
339 2be1_A Serine/threonine-protei 92.6 0.31 1.1E-05 48.0 8.4 108 298-405 10-135 (339)
340 3sbq_A Nitrous-oxide reductase 92.0 13 0.00045 38.8 21.7 193 300-493 144-409 (638)
341 1zgk_A Kelch-like ECH-associat 91.8 4.7 0.00016 38.9 16.0 173 308-494 39-242 (308)
342 3b7f_A Glycosyl hydrolase, BNR 91.8 12 0.0004 37.6 24.6 158 288-447 55-259 (394)
343 3qhy_B Beta-lactamase inhibito 91.7 9.3 0.00032 36.4 19.0 182 289-493 64-247 (282)
344 2zwa_A Leucine carboxyl methyl 91.2 9.9 0.00034 41.6 19.4 102 300-402 454-579 (695)
345 3s25_A Hypothetical 7-bladed b 90.7 12 0.00042 35.9 21.1 141 333-494 58-218 (302)
346 4asc_A Kelch repeat and BTB do 89.5 15 0.00052 35.2 20.8 181 300-494 7-223 (315)
347 2zwa_A Leucine carboxyl methyl 88.0 12 0.0004 41.1 16.8 191 299-493 399-636 (695)
348 3b7f_A Glycosyl hydrolase, BNR 87.2 25 0.00087 35.0 24.9 108 288-397 115-259 (394)
349 2woz_A Kelch repeat and BTB do 86.9 22 0.00077 34.0 19.6 173 309-494 25-233 (318)
350 2wg3_C Hedgehog-interacting pr 86.1 11 0.00039 38.7 14.4 112 370-482 14-159 (463)
351 3sbq_A Nitrous-oxide reductase 85.7 2.7 9.3E-05 43.8 9.1 97 351-450 299-408 (638)
352 3uc1_A DNA gyrase subunit A; D 80.8 43 0.0015 32.5 23.9 148 298-449 109-278 (327)
353 3q6k_A 43.2 kDa salivary prote 80.5 48 0.0016 32.9 23.7 167 309-479 124-341 (381)
354 1wp5_A Topoisomerase IV; broke 79.8 46 0.0016 32.2 27.2 197 296-492 48-277 (323)
355 2uvk_A YJHT; unknown function, 79.2 49 0.0017 32.2 16.8 88 300-390 22-128 (357)
356 4gq2_M Nucleoporin NUP120; bet 77.0 43 0.0015 38.0 16.0 37 289-325 237-274 (950)
357 3qhy_B Beta-lactamase inhibito 75.5 55 0.0019 30.8 15.0 181 289-492 25-207 (282)
358 3no0_A DNA gyrase subunit A; D 73.8 60 0.0021 30.5 19.2 122 368-493 66-197 (276)
359 4gq2_M Nucleoporin NUP120; bet 66.0 86 0.0029 35.6 15.2 36 329-365 237-272 (950)
360 3no0_A DNA gyrase subunit A; D 65.3 91 0.0031 29.2 20.7 191 299-492 36-246 (276)
361 1sqj_A OXG-RCBH, oligoxylogluc 63.7 1.8E+02 0.0061 32.1 17.1 160 327-486 14-195 (789)
362 2wg3_C Hedgehog-interacting pr 63.1 1.4E+02 0.0047 30.5 28.5 30 201-230 14-44 (463)
363 3l6v_A GYRA, DNA gyrase subuni 59.9 1.4E+02 0.0047 29.5 28.9 204 288-492 46-316 (370)
364 1suu_A DNA gyrase subunit A; t 59.8 1.2E+02 0.0042 28.9 25.4 190 299-493 9-232 (312)
365 1zi0_A DNA gyrase subunit A; b 56.3 1.4E+02 0.0048 28.4 30.5 196 296-493 51-278 (307)
366 3l6v_A GYRA, DNA gyrase subuni 49.3 2E+02 0.0069 28.2 23.7 190 299-493 8-266 (370)
367 4fhn_B Nucleoporin NUP120; pro 43.8 54 0.0019 38.1 8.9 37 289-325 239-276 (1139)
368 3uc1_A DNA gyrase subunit A; D 43.4 2.3E+02 0.0079 27.2 26.3 195 297-493 52-280 (327)
369 4hvt_A Ritya.17583.B, post-pro 42.9 3.6E+02 0.012 29.2 25.7 174 308-491 216-429 (711)
370 1suu_A DNA gyrase subunit A; t 42.7 2.3E+02 0.0078 27.0 30.5 196 296-492 56-283 (312)
371 1zi0_A DNA gyrase subunit A; b 35.7 2.9E+02 0.0099 26.2 25.1 188 300-492 5-226 (307)
372 4fhn_B Nucleoporin NUP120; pro 34.2 99 0.0034 35.9 9.0 35 330-365 240-274 (1139)
373 3q6k_A 43.2 kDa salivary prote 32.4 3.7E+02 0.013 26.4 20.1 141 351-492 124-306 (381)
374 4a9v_A PHOX; hydrolase, beta-p 30.9 1.6E+02 0.0054 30.9 8.8 59 329-388 477-549 (592)
375 3f7f_A Nucleoporin NUP120; nuc 29.5 76 0.0026 34.3 6.3 38 288-326 222-259 (729)
376 2cn3_A Xyloglucanase, beta-1,4 27.3 6.2E+02 0.021 27.3 20.3 103 288-390 23-153 (737)
377 2cn3_A Xyloglucanase, beta-1,4 27.0 6.3E+02 0.021 27.3 15.8 112 329-440 24-153 (737)
378 4hvt_A Ritya.17583.B, post-pro 24.9 6.8E+02 0.023 27.0 22.3 188 295-493 137-382 (711)
379 1sqj_A OXG-RCBH, oligoxylogluc 24.7 7.1E+02 0.024 27.2 22.9 155 287-444 14-195 (789)
380 4a9v_A PHOX; hydrolase, beta-p 24.1 2.7E+02 0.0091 29.3 9.1 59 288-347 476-549 (592)
381 3f7f_A Nucleoporin NUP120; nuc 22.7 1.1E+02 0.0036 33.2 5.9 37 329-368 223-259 (729)
382 3zwu_A Alkaline phosphatase PH 22.0 2.3E+02 0.0078 30.0 8.3 57 330-387 478-548 (592)
383 3zwu_A Alkaline phosphatase PH 20.7 2.9E+02 0.0098 29.2 8.7 59 420-479 477-548 (592)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-46 Score=416.94 Aligned_cols=411 Identities=17% Similarity=0.191 Sum_probs=302.5
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeEecCCCCcccCCCCceEEecc
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-------------CKSFTDDGGFGSNAKEGKIKFGK 258 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 258 (645)
..++|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++... ...|.+++..+.....
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~------- 123 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE------- 123 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-------
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEEC-------
Confidence 44568899999999999999999999999999999998754322 1122222222111100
Q ss_pred cCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEE
Q 006424 259 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF 335 (645)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 335 (645)
.......+.. |+ .+.....+.+|...|++++|+|++ .|++|+.|++|++||..++++...+. |...|.+++|
T Consensus 124 ~~~~~~~v~~----wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 124 GRERFGHVFL----FD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp CSSCSEEEEE----TT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred CCCceeEEEE----ee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence 0000011111 22 134556788999999999999986 59999999999999999998888875 9999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCcEEEee--------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 336 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 336 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
+| ++++|++|+.|++|++||+.+++..... +|...|.+++|+|+|++|++++.|++|++||+.+.......
T Consensus 199 sp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 199 NP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 99 9999999999999999999988776543 68999999999999999999999999999999876543211
Q ss_pred Ee------------------------------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424 408 VD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 408 ~~------------------------------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
.. .......|...|++++|+|+| .+|++++.|+.|++||+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Confidence 00 001123467899999999998 89999999999999997532
Q ss_pred eeeEe---------------------------------------------------------------------------
Q 006424 452 IHKFK--------------------------------------------------------------------------- 456 (645)
Q Consensus 452 ~~~~~--------------------------------------------------------------------------- 456 (645)
.....
T Consensus 357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 11000
Q ss_pred -------ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424 457 -------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 457 -------~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~ 529 (645)
...+...+.+++|+|||++|++|+.|++|++||+.++... ......+.+.+.+++|+|++.+|+
T Consensus 437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---------~~~~~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---------EVKTIVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---------EEEEEECSSCEEEEEECTTSSEEE
T ss_pred EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---------eeeccCCCCceEEEEECCCCCEEE
Confidence 0012345778999999999999999999999998765211 011134567789999999999999
Q ss_pred ccCCCCccccCccccccccCC-----ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424 530 SLCSSSLRDCSQKWDNLETAP-----WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ 604 (645)
Q Consensus 530 ~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~ 604 (645)
+.+.|. .+.+|+...... ....|...+.+++|||||+++++++. |++|++|++.++.... ....
T Consensus 508 s~s~d~---~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~~~~-------~~~~ 576 (611)
T 1nr0_A 508 ATDQSR---KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSDHP-------IIIK 576 (611)
T ss_dssp EEETTS---CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTTSCC-------EEET
T ss_pred EEcCCC---CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCccccc-------chhh
Confidence 877764 356777643111 12337888999999999999999998 9999999998762000 0011
Q ss_pred hhc-cCCCCCccCCCCcceEEEEecCCCeEeEEEe
Q 006424 605 QCL-NNVDDVRAISATWGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 605 ~~~-~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~ 638 (645)
..| ......++|++ |++ |+|||.||+||+|++
T Consensus 577 ~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred ccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence 122 12222344555 688 999999999999996
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-45 Score=406.32 Aligned_cols=455 Identities=23% Similarity=0.350 Sum_probs=329.2
Q ss_pred hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424 97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME 176 (645)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (645)
+.|++|...|..++|+|++.. +++.+. |+.++.|
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~------------d~~v~iW--------------------------------- 43 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASD------------DKTVKLW--------------------------------- 43 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEET------------TSEEEEE---------------------------------
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeC------------CCEEEEE---------------------------------
Confidence 358999999999999999987 777776 5555555
Q ss_pred hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----------ceeeeEecCCCCcc
Q 006424 177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFG 246 (645)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~----------~~~~~~~~~~~~~~ 246 (645)
.. .....++|.+|.+.|++++|+|||++||+|+.|++|+|||.... ......+.+++..+
T Consensus 44 --d~--------~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l 113 (577)
T 2ymu_A 44 --NR--------NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 113 (577)
T ss_dssp --CT--------TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred --EC--------CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEE
Confidence 00 00134567889999999999999999999999999999986432 11223344443322
Q ss_pred cCCC-CceEEec-----------------------------------------ccC----------------------CC
Q 006424 247 SNAK-EGKIKFG-----------------------------------------KKK----------------------SS 262 (645)
Q Consensus 247 ~~~~-~~~~~~~-----------------------------------------~~~----------------------~~ 262 (645)
.... .+.+.++ ... ..
T Consensus 114 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (577)
T 2ymu_A 114 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 193 (577)
T ss_dssp EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCC
Confidence 1111 0000000 000 00
Q ss_pred cceeecCC---CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEee
Q 006424 263 HVPVVIPD---EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNP 337 (645)
Q Consensus 263 ~~~~~~~~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p 337 (645)
.......+ .+|+...+.+..+.+|...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|.+++|+|
T Consensus 194 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP 272 (577)
T ss_dssp CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT
T ss_pred EEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC
Confidence 00000111 23444566677888999999999999997 89999999999999975 4555555 5889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 338 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
+++.+++++.|+.|++||........+.+|...|.+++|+|+++.+++++.||.|++||....... . +. .|
T Consensus 273 -d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~--~~----~~ 343 (577)
T 2ymu_A 273 -DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--T--LT----GH 343 (577)
T ss_dssp -TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--E--EC----CC
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--E--Ee----CC
Confidence 999999999999999999877777778889999999999999999999999999999998755432 1 12 23
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
...+.+++|+|++ .++++++.|+.|++||... ....+ ..|...|.+++|+|++++|++++.|+.|++||.......
T Consensus 344 ~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~ 420 (577)
T 2ymu_A 344 SSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 420 (577)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEE
T ss_pred CCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE
Confidence 5789999999998 8999999999999999653 33333 347889999999999999999999999999997543211
Q ss_pred CCcccCCcceeeee------------------------------ecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424 497 SSKQKNSVRSCEHF------------------------------FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546 (645)
Q Consensus 497 ~~~~~~~~~~~~~~------------------------------~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~ 546 (645)
...........+.| .+.+.+.+++|+|++..|++.+.|. .+++|+..
T Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~---~i~iw~~~ 497 (577)
T 2ymu_A 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRN 497 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS---EEEEEETT
T ss_pred EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---EEEEEcCC
Confidence 10000111111112 2345567788999999998777664 35677753
Q ss_pred cc-CCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceE
Q 006424 547 ET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLV 623 (645)
Q Consensus 547 ~~-~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ 623 (645)
.. ...+..|...+++++|||||+++++++. |+.|++||.... .......|...+ ++|++ ||++
T Consensus 498 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~~~~------------~~~~~~~h~~~v~~~~fs~-dg~~ 563 (577)
T 2ymu_A 498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQ------------LLQTLTGHSSSVWGVAFSP-DGQT 563 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSEEEEECTTSC------------EEEEEECCSSCEEEEEECT-TSSC
T ss_pred CCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC-cCEEEEEeCCCC------------EEEEEcCCCCCEEEEEEcC-CCCE
Confidence 22 2255677888999999999999999998 999999996432 112223344443 45655 7999
Q ss_pred EEEecCCCeEeEEE
Q 006424 624 IVTAGCDGMIKTFH 637 (645)
Q Consensus 624 ivt~s~Dg~Iriw~ 637 (645)
|+|+|.||+|++|+
T Consensus 564 l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 564 IASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEeCCCEEEEeC
Confidence 99999999999996
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-43 Score=391.68 Aligned_cols=380 Identities=16% Similarity=0.119 Sum_probs=279.0
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.+.+.+.+++|+|||++||+++ ++.|++|++.+ .
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~---------------------------------------------~ 49 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L 49 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC---------------------------------------------c
Confidence 4678899999999999999998 56999999976 3
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-------------------------------------
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ------------------------------------- 319 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~------------------------------------- 319 (645)
.....+.+|...|++++|+|++ +|++|+.|++|+|||+.+++
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 4456667777777777777776 67777777777777764321
Q ss_pred ---------EEEEe-cCCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEE
Q 006424 320 ---------CLNVF-DHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVG 387 (645)
Q Consensus 320 ---------~~~~~-~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g 387 (645)
....+ +|...|++++|+| ++. .|++|+.|++|++||...++... +.+|...|++++|+|+|++|++|
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeeCCCCcceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 11111 3666788888888 554 69999999999999998876554 67899999999999999999999
Q ss_pred ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eE----------
Q 006424 388 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KF---------- 455 (645)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~---------- 455 (645)
+.|+.|++||+.+................|...|.+++|+|+| .+|++++.|++|++||+..... .+
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence 9999999999987664322101000112467899999999998 8999999999999999764221 11
Q ss_pred -------------------------------eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc---cc
Q 006424 456 -------------------------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK---QK 501 (645)
Q Consensus 456 -------------------------------~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~---~~ 501 (645)
....|...|.+++|+|+|++|++++.||+|++||+.++...... +.
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 12357889999999999999999999999999999876421110 10
Q ss_pred C-------------------------------------------CcceeeeeecCC------------------------
Q 006424 502 N-------------------------------------------SVRSCEHFFSEG------------------------ 514 (645)
Q Consensus 502 ~-------------------------------------------~~~~~~~~~~~g------------------------ 514 (645)
. .......+++++
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 0 001122233332
Q ss_pred --cEEEEecCCCCccccccCCCCccccCccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc-
Q 006424 515 --VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI- 588 (645)
Q Consensus 515 --~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~- 588 (645)
.+.+++|+|++..|++.+.|+ .+++|+...... ....|...+++++|||||+++++++. |++|++|++.+
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~---~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~ 523 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANN 523 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGT
T ss_pred CCCceEEEEeCCCCEEEEeCCCC---eEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCC
Confidence 356789999999999887764 466777643211 12457788999999999999999998 99999999987
Q ss_pred CCCCCcCChhhhHhhh-hh--ccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424 589 DSDGYCQDPQQQRLQQ-QC--LNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG 640 (645)
Q Consensus 589 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g 640 (645)
++ .... .. |......++|++ ||++|+|||.||+||+|++..
T Consensus 524 ~~----------~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 524 FE----------LAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp TE----------ESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC
T ss_pred Cc----------eeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCC
Confidence 31 0011 11 222233355666 799999999999999999753
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-42 Score=383.76 Aligned_cols=377 Identities=23% Similarity=0.366 Sum_probs=283.3
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+.|+||++.|++++|||||++||+|+.|++|+|||..
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~----------------------------------------- 46 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------------------------------------- 46 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------------------------------------
T ss_pred EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-----------------------------------------
Confidence 345689999999999999999999999999999999953
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
++.+..+.+|.+.|++++|+|++ +|++++.|++|++||.. ++.+..+ .|...|.+++|+| ++++|++++.|
T Consensus 47 -----~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d 119 (577)
T 2ymu_A 47 -----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 119 (577)
T ss_dssp -----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred -----CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEEECCCCCEEEEEECC-CCCEEEEEcCC
Confidence 35577889999999999999998 89999999999999964 5555555 4777788888877 66666666666
Q ss_pred CcEEEEeC------------------------------------------------------------------------
Q 006424 350 GKVRIWGV------------------------------------------------------------------------ 357 (645)
Q Consensus 350 g~i~vwd~------------------------------------------------------------------------ 357 (645)
+.+++|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (577)
T 2ymu_A 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199 (577)
T ss_dssp SCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEc
Confidence 66655553
Q ss_pred ----------CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 358 ----------CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 358 ----------~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
.......+..|...|.+++|+|+++++++++.|+.|++||...... .. + ..|...|.+++|+
T Consensus 200 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~--~~--~----~~~~~~v~~v~~~ 271 (577)
T 2ymu_A 200 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QT--L----TGHSSSVNGVAFR 271 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EE--E----CCCSSCEEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE--EE--E----ecCCCCEEEEEEc
Confidence 2222333456777899999999999999999999999999754322 11 1 2245789999999
Q ss_pred CCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424 428 RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS 506 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 506 (645)
|++ ..+++++.|+.|++||... ....+ ..|...|.+++|+|++++|++++.||.|++||+................
T Consensus 272 ~d~-~~l~~~~~d~~i~~w~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 272 PDG-QTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348 (577)
T ss_dssp TTS-SEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred CCC-CEEEEEeCCCEEEEEeCCCcEEEEE--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence 998 8999999999999999653 23333 4488899999999999999999999999999987653211111111111
Q ss_pred eeeee------------------------------cCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCccCCC
Q 006424 507 CEHFF------------------------------SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDS 555 (645)
Q Consensus 507 ~~~~~------------------------------~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~ 555 (645)
++.|+ +.+.+.+++|+|++..|++.+.+. .+.+|+.... ......+
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~---~v~~~~~~~~~~~~~~~~ 425 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRNGQLLQTLTGH 425 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS---EEEEECTTCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC---EEEEEeCCCCEEEEecCC
Confidence 11111 345567788899999888776664 3556764222 2245667
Q ss_pred CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeE
Q 006424 556 ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMI 633 (645)
Q Consensus 556 ~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~I 633 (645)
...+++++|+||++++++++. |+.|++||..... ......|... .++|++ |+++|+|++.||+|
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~~~~~------------~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i 491 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASD-DKTVKLWNRNGQL------------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 491 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCE------------EEEEECCSSCEEEEEECT-TSCEEEEEETTSEE
T ss_pred CCCeEEEEECCCCCEEEEEcC-CCEEEEEECCCCE------------EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence 888999999999999999988 8999999975431 1112223333 345555 79999999999999
Q ss_pred eEEEecCcccc
Q 006424 634 KTFHNYGLPIR 644 (645)
Q Consensus 634 riw~~~g~~~~ 644 (645)
++|+..|.+++
T Consensus 492 ~iw~~~~~~~~ 502 (577)
T 2ymu_A 492 KLWNRNGQLLQ 502 (577)
T ss_dssp EEEETTSCEEE
T ss_pred EEEcCCCCEEE
Confidence 99998876653
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-42 Score=363.39 Aligned_cols=254 Identities=20% Similarity=0.377 Sum_probs=224.0
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
.+.......+.+|.++|++++|+|++++|++|+.||+|++||+.+
T Consensus 95 ~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~----------------------------------- 139 (410)
T 1vyh_C 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------------- 139 (410)
T ss_dssp CCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----------------------------------
T ss_pred ccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------
Confidence 344445677899999999999999999999999999999999987
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~ 344 (645)
+.....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++|+| ++++++
T Consensus 140 ----------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~ 208 (410)
T 1vyh_C 140 ----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIV 208 (410)
T ss_dssp ----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEE
T ss_pred ----------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEE
Confidence 45567889999999999999987 89999999999999999999888874 889999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
+|+.|++|++||++++.+.. +.+|...|.++.|+|+++++++|+.||.|++||+.+...... +. .|...|.+
T Consensus 209 s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~---~~----~h~~~v~~ 281 (410)
T 1vyh_C 209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---LR----EHRHVVEC 281 (410)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---EC----CCSSCEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE---ec----CCCceEEE
Confidence 99999999999999887654 678999999999999999999999999999999987765322 22 24578999
Q ss_pred EEEcCCC-------------------CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 424 IQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 424 i~~s~~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
++|+|++ ..++++|+.|+.|++||++..........|...|.+++|+|++++|++|+.||.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 9999962 258999999999999998866555555568899999999999999999999999
Q ss_pred EEEEeCCCC
Q 006424 485 VYVWNYDEL 493 (645)
Q Consensus 485 I~iwd~~~~ 493 (645)
|++||+.++
T Consensus 362 i~vwd~~~~ 370 (410)
T 1vyh_C 362 LRVWDYKNK 370 (410)
T ss_dssp EEEECCTTS
T ss_pred EEEEECCCC
Confidence 999998765
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-40 Score=393.97 Aligned_cols=451 Identities=15% Similarity=0.197 Sum_probs=329.7
Q ss_pred hhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHh
Q 006424 98 ELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEV 177 (645)
Q Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (645)
.+.+|...|+.++|+|++.. +++++. |+.++.|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~------------d~~i~vw---------------------------------- 642 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGA------------DKTLQVF---------------------------------- 642 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEET------------TSCEEEE----------------------------------
T ss_pred EEecccccEEEEEECCCCCE-EEEEeC------------CCeEEEE----------------------------------
Confidence 57789999999999999887 676666 4444444
Q ss_pred hhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC----CCce
Q 006424 178 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGK 253 (645)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (645)
. ........++.+|.+.|++++|+|+|++|++|+.||.|++||+.++................. ....
T Consensus 643 -~-------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 643 -K-------AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp -E-------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred -E-------CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence 0 001113456779999999999999999999999999999999998776544332222211000 0111
Q ss_pred EEecccCCCcceeecCCCceec-cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-------
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF------- 324 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~------- 324 (645)
+.........+ .+|+. .+.....+.+|.+.|++++|+|++ .+++++.||+|++||+.+++....+
T Consensus 715 ~l~sg~~d~~v------~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 715 LLATGSNDFFL------KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp EEEEEETTSCE------EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred EEEEEeCCCeE------EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 11111111111 23333 245567788999999999999987 8999999999999999776543322
Q ss_pred -------------------------------------------------cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 325 -------------------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 325 -------------------------------------------------~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.|...|.+++|+| ++.++++++.|+.|++|
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELW 867 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 3567889999999 99999999999999999
Q ss_pred eCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee----------------------------e
Q 006424 356 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL----------------------------E 406 (645)
Q Consensus 356 d~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~----------------------------~ 406 (645)
|+.++.... +.+|...|.+++|+|+|+++++++.||.|++|++....... .
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 999877654 67899999999999999999999999999999976321100 0
Q ss_pred EEeec--cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 407 KVDFH--DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 407 ~~~~~--~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
..... .........+.+++|+|++ .++++|+.||.|++||............|...|.+++|+|++++|++++.||.
T Consensus 948 ~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 948 LIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp EEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred EEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 00000 0001124679999999998 89999999999999998765555555568899999999999999999999999
Q ss_pred EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCc
Q 006424 485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGS 562 (645)
Q Consensus 485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~ 562 (645)
|++||+.++..... ..+.+.+..++|+|++..+....+ ..+.+|+...... ....+...++++
T Consensus 1027 i~vwd~~~~~~~~~-----------~~~~~~v~~~~~~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1027 IQVWNWQTGDYVFL-----------QAHQETVKDFRLLQDSRLLSWSFD----GTVKVWNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp EEEEETTTTEEECC-----------BCCSSCEEEEEECSSSEEEEEESS----SEEEEEETTTTCCCEEEECCSSCCCCE
T ss_pred EEEEECCCCceEEE-----------ecCCCcEEEEEEcCCCcEEEEECC----CcEEEEECCCCceeEEEcccCCcEEEE
Confidence 99999988743221 234456777888887765443332 2356676643332 456677889999
Q ss_pred cccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeEeEEEec
Q 006424 563 WFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 563 ~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
+|+|||+++++++. |+.|++||+.++. .......|... .+++++ ||.+|+||+.||+|++|++.
T Consensus 1092 ~~s~d~~~l~s~s~-d~~v~iwd~~~~~-----------~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1092 AISSDATKFSSTSA-DKTAKIWSFDLLS-----------PLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp EECSSSSSCEEECC-SSCCCEECSSSSS-----------CSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESS
T ss_pred EECCCCCEEEEEcC-CCcEEEEECCCcc-----------eeeeeccCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 99999999999998 9999999998872 11122233332 345555 79999999999999999965
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-39 Score=324.50 Aligned_cols=281 Identities=15% Similarity=0.228 Sum_probs=232.7
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
...++|++|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--------------------------------------- 44 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--------------------------------------- 44 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------------------------
Confidence 35678999999999999999999999999999999999987
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
+..+..+.+|..+|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++.+|++|+.
T Consensus 45 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~ 117 (304)
T 2ynn_A 45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD 117 (304)
T ss_dssp ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred ------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECC
Confidence 34467788899999999999987 89999999999999999999888775 899999999999 9999999999
Q ss_pred CCcEEEEeCCCCcE--EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 349 DGKVRIWGVCEKRV--VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 349 dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
|++|++||++++.. ..+.+|...|.+++|+| ++..|++|+.||.|++||++.......... .+...+..+.
T Consensus 118 D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~ 191 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYVD 191 (304)
T ss_dssp TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCEEEEE
T ss_pred CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc------CCcCcEEEEE
Confidence 99999999987643 34678999999999999 678999999999999999987654332211 1236788999
Q ss_pred EcC--CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424 426 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503 (645)
Q Consensus 426 ~s~--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~ 503 (645)
|+| ++ .+|++++.|+.|++||++..........|...|.+++|+|++++|++|+.||+|++||+.+++.....
T Consensus 192 ~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---- 266 (304)
T 2ynn_A 192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---- 266 (304)
T ss_dssp ECCSTTC-CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred EEEcCCC-CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----
Confidence 987 44 79999999999999999866555555568999999999999999999999999999999876422111
Q ss_pred cceeeeeecCCcEEEEecCCCCc--cccccCCC
Q 006424 504 VRSCEHFFSEGVSVAVQWPGIGT--EQKSLCSS 534 (645)
Q Consensus 504 ~~~~~~~~~~g~~~~v~~s~~~~--~l~~~~~~ 534 (645)
-.+.+.+.+++|+|++. ++++...+
T Consensus 267 ------~~~~~~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 267 ------NVGLERSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp ------CCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred ------cCCCccEEEEEECCCCCceEEEEecCC
Confidence 11234566777777664 24444433
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=325.83 Aligned_cols=279 Identities=23% Similarity=0.365 Sum_probs=226.9
Q ss_pred ccccccccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 193 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+.+++|.+.|++++|+|+ +.+|+||+.||+|++|++.....
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------------------- 70 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------------------- 70 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence 4567899999999999985 56999999999999999875211
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.....+.+|...|.+++|++++ .+++++.|++|++||+.+++.+..+. +...+.+++|+| ++++|++|
T Consensus 71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g 140 (321)
T 3ow8_A 71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG 140 (321)
T ss_dssp ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence 1234678999999999999987 89999999999999999999988875 777899999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.|+.|++||+++++... +..+...+.+++|+|+|++|++|+.||.|++||+++...... +. .|..+|.+++
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---~~----~h~~~v~~l~ 213 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---LE----GHAMPIRSLT 213 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---EC----CCSSCCCEEE
T ss_pred cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---Ec----ccCCceeEEE
Confidence 999999999999876554 667788899999999999999999999999999987754321 22 2457899999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
|+|++ .+|++++.|+.|++||++..........|...|.+++|+|++++|++++.||+|++||+.++...
T Consensus 214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~--------- 283 (321)
T 3ow8_A 214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV--------- 283 (321)
T ss_dssp ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---------
T ss_pred EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE---------
Confidence 99997 89999999999999998865555555568899999999999999999999999999999865211
Q ss_pred eeeeeecCCcEEEEecCCCCccccccCC
Q 006424 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
.....+.+.+.+++|+|++..|++.+.
T Consensus 284 -~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 284 -HTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -EEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 001123445556666655555554433
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-38 Score=323.44 Aligned_cols=303 Identities=18% Similarity=0.284 Sum_probs=243.1
Q ss_pred cccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+.+..+|.+|.+.|++++|+|++ ++|+||+.||+|++|++......
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------------------------------- 53 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------------------------------- 53 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence 44567899999999999999965 89999999999999998642110
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.+.++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+ +|...|.+++|+| ++.++++|
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 125 (319)
T 3frx_A 54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG 125 (319)
T ss_dssp -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence 023467888999999999999997 8999999999999999999998877 4999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC------CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.|++|++||++......+.+|...|.++.|+|. +..+++++.|+.|++||++....... + ..|...
T Consensus 126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~----~~h~~~ 198 (319)
T 3frx_A 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---F----IGHNSN 198 (319)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE---E----CCCCSC
T ss_pred eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee---e----cCCCCc
Confidence 9999999999998888888999999999999985 45899999999999999987654322 2 234688
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
|.+++|+|+| .+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.++ +++|+++......
T Consensus 199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~--- 272 (319)
T 3frx_A 199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD--- 272 (319)
T ss_dssp EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEE---
T ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeee---
Confidence 9999999998 899999999999999988655444433 456899999999999999988654 9999987541100
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 580 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~ 580 (645)
.+.+.-. .....+...+.+++|||||+++++++. |+.
T Consensus 273 -------------------~~~~~~~-----------------------~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~ 309 (319)
T 3frx_A 273 -------------------DLRPEFA-----------------------GYSKAAEPHAVSLAWSADGQTLFAGYT-DNV 309 (319)
T ss_dssp -------------------EECCCCT-----------------------TCCGGGCCCEEEEEECTTSSEEEEEET-TSC
T ss_pred -------------------ccCcccc-----------------------ccccCcCcceeEEEECCCCCEEEEeec-Cce
Confidence 0000000 000112334566788888888888877 889
Q ss_pred CCCCCCccC
Q 006424 581 LPLWDVTID 589 (645)
Q Consensus 581 i~iWd~~~~ 589 (645)
|++||+.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999998764
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-40 Score=378.89 Aligned_cols=421 Identities=11% Similarity=0.047 Sum_probs=285.7
Q ss_pred hcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHhhh
Q 006424 100 EQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQ 179 (645)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (645)
.+|...|..++|+|++.. +++.+. |+.++.|-
T Consensus 14 ~gh~~~V~~lafspdg~~-lAsgs~------------Dg~I~lw~----------------------------------- 45 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNL-LAIATV------------TGEVHIYG----------------------------------- 45 (902)
T ss_dssp EECSSCEEEEEEETTTTE-EEEEET------------TSEEEEEC-----------------------------------
T ss_pred cCCCCCcEEEEECCCCCE-EEEEeC------------CCEEEEEe-----------------------------------
Confidence 478899999999999876 777776 55555540
Q ss_pred cccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEeccc
Q 006424 180 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK 259 (645)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (645)
... ...... ..|.+.|++++|+| |++|++++.|++|++||+.++
T Consensus 46 ~~~-------~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~--------------------------- 89 (902)
T 2oaj_A 46 QQQ-------VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ--------------------------- 89 (902)
T ss_dssp STT-------CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC---------------------------
T ss_pred CCC-------cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC---------------------------
Confidence 000 001111 24788999999999 889999999999999999873
Q ss_pred CCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE-----------E-ecC
Q 006424 260 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----------V-FDH 326 (645)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~-----------~-~~~ 326 (645)
+.+..+. |.+.|++++|+|++ ++++|+.||+|++||+++++... . ..|
T Consensus 90 ------------------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 90 ------------------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp ------------------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred ------------------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 3344554 67899999999997 99999999999999999887641 1 137
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-c------------------CCCeEEEEEccCCCEEEEE
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVG 387 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~------------------~~~v~~l~~sp~g~~l~~g 387 (645)
...|++++|+|.++..+++|+.|+.| +||+++++...... + ...|++++|+|+|++|++|
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 88999999999445789999999999 99999988765332 2 4679999999999999999
Q ss_pred ecCCeEEEEEecCCceeeeEEee---ccccc---------cCCCCeEEEEEc----CCCCcEEEEEEC------------
Q 006424 388 SITGTCHFYKASGNDLKLEKVDF---HDRKK---------TSGNKITGIQFS----RDESQRIMITSE------------ 439 (645)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~~---------~~~~~i~~i~~s----~~g~~~l~~~s~------------ 439 (645)
+.||.|++||+++.+.... ..+ ..+.. .+...|++++|+ |++..++++|+.
T Consensus 230 s~Dg~i~lWd~~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp ETTCCEEEEETTTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred ECCCeEEEEECCCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999999987654221 001 00000 122356666663 332234444443
Q ss_pred ----------------------------------------------------------------CCeEEEEECCcceeeE
Q 006424 440 ----------------------------------------------------------------DSKLRILDGVDVIHKF 455 (645)
Q Consensus 440 ----------------------------------------------------------------dg~I~iwd~~~~~~~~ 455 (645)
|+.|++||+.+.....
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence 3444444432110000
Q ss_pred e-------e----------------------------------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 456 K-------G----------------------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 456 ~-------~----------------------------------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
. . ..|...+.+++|+|++++|++|+.||+|++||+.++.
T Consensus 389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~ 468 (902)
T 2oaj_A 389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD 468 (902)
T ss_dssp CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence 0 0 0112223344567899999999999999999999874
Q ss_pred cCCCcccCCcceee-----eeecCCcEEEEecCCCCccccccCCCCccccCcccccccc---------------------
Q 006424 495 FPSSKQKNSVRSCE-----HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--------------------- 548 (645)
Q Consensus 495 ~~~~~~~~~~~~~~-----~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--------------------- 548 (645)
..... ..... ...+.+.+.+++|+|++..|++.+.|+ .+++|+....
T Consensus 469 ~~~~~----~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg---tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 469 IQDNA----SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG---DVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp TTTTB----CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS---CEEEEEEEECCC---------------CCSC
T ss_pred ccCCc----eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc---EEEEEEecCccccCccccCCCcccceeeeec
Confidence 21110 00000 013456788888888888888777664 3456655322
Q ss_pred --------------------------CCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHh
Q 006424 549 --------------------------APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRL 602 (645)
Q Consensus 549 --------------------------~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~ 602 (645)
......|...+++++||||| ++++++. |++|++||+.+...... ....
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~~~~~----~~~~ 615 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPAIIYM----ENIR 615 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTEEEEE----EEGG
T ss_pred cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCeEEEE----eehh
Confidence 22345688899999999999 9999998 99999999876510000 0000
Q ss_pred hhh-hccCCCCCccCC-----CC--cceEEEEecCCCeEeEEEe
Q 006424 603 QQQ-CLNNVDDVRAIS-----AT--WGLVIVTAGCDGMIKTFHN 638 (645)
Q Consensus 603 ~~~-~~~~~~~~~~~~-----~~--d~~~ivt~s~Dg~Iriw~~ 638 (645)
... .|......++|+ +. ++.+|++|+.||+|++|++
T Consensus 616 ~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 616 EISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp GTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred HhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 010 222223345676 42 2589999999999999997
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-38 Score=321.29 Aligned_cols=249 Identities=18% Similarity=0.348 Sum_probs=212.4
Q ss_pred cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
....++|++|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-------------------------------------- 86 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-------------------------------------- 86 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Confidence 345677999999999999999999999999999999999886
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEe-cCCCcEEEEEEeeCCCCEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~-~~~~~v~~l~~~p~~~~~l 343 (645)
...+..+..|...|.+++|+|++ +|++|+.|+.|++||+.++. ....+ +|...|.++.|++ ++ .+
T Consensus 87 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l 157 (340)
T 1got_B 87 -------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QI 157 (340)
T ss_dssp -------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EE
T ss_pred -------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cE
Confidence 44566778899999999999997 89999999999999997653 33333 5899999999998 54 58
Q ss_pred EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
++++.|++|++||+++++... +.+|...|.+++|+|+++++++|+.||.|++||+++...... +. .|...|+
T Consensus 158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~---~~----~h~~~v~ 230 (340)
T 1got_B 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT---FT----GHESDIN 230 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---EC----CCSSCEE
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---Ec----CCcCCEE
Confidence 999999999999999887655 667999999999999999999999999999999987764322 22 2457899
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceee--EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+++|+|++ .+|++++.|+.|++||++..... +....+...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 231 ~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 231 AICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999997 89999999999999998754433 322334457999999999999999999999999998765
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.9e-39 Score=329.85 Aligned_cols=251 Identities=17% Similarity=0.273 Sum_probs=201.0
Q ss_pred cccccCcEEEEEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
..+|.+.|++++|||||++||+|+. |+.|++|+..++...
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------------------------- 83 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------------------------- 83 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence 3479999999999999999999998 677888887653211
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE-----ecCCCcEEEEEEeeCCCCEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~v~~l~~~p~~~~~l~ 344 (645)
........+|...|.+++|+|++.+++++.||+|++||+.+++.... .+|...|++++|+| ++++|+
T Consensus 84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~ 155 (357)
T 4g56_B 84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155 (357)
T ss_dssp -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence 12233455789999999999999889999999999999988765432 35889999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+|+.|+.|++||+++++... +..|...|++++|+|++. ++++++.||.|++||+++...... .. ...+...++
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~----~~~~~~~v~ 230 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-ID----FCASDTIPT 230 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CC----CTTCCSCEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-ee----ecccccccc
Confidence 99999999999999988665 667899999999999875 789999999999999987664322 11 122346799
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~ 493 (645)
+++|+|++..++++|+.|+.|++||++..........|...|++++|+|++ ++|++|+.||+|+|||++++
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999876899999999999999988655444555588999999999987 57999999999999998765
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=321.10 Aligned_cols=298 Identities=16% Similarity=0.267 Sum_probs=246.4
Q ss_pred ccccccchhhhhhcccccceEEeeecccc---CCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCC
Q 006424 88 MDSEANCMVDELEQDQMNECVVTLEGESN---GFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK 164 (645)
Q Consensus 88 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (645)
+.+....+++.+.+|.+.|+.++|+++.. ..+++.+. |+.++.|-
T Consensus 17 ~~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~------------D~~v~vW~-------------------- 64 (321)
T 3ow8_A 17 GTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL------------DDLVKVWK-------------------- 64 (321)
T ss_dssp ----CEEEEEETTSSSSCEEEEEEC-------CEEEEEET------------TSCEEEEE--------------------
T ss_pred hhhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcC------------CCCEEEEE--------------------
Confidence 44666778889999999999999998632 22666666 66665550
Q ss_pred CCCCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCC
Q 006424 165 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG 244 (645)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 244 (645)
-.. ........+.+|...|++++|+|++.++++|+.|++|++||+.+
T Consensus 65 ---------------~~~-----~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~------------- 111 (321)
T 3ow8_A 65 ---------------WRD-----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN------------- 111 (321)
T ss_dssp ---------------EET-----TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------
T ss_pred ---------------CCC-----CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------
Confidence 000 01113345789999999999999999999999999999999987
Q ss_pred cccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE
Q 006424 245 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV 323 (645)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~ 323 (645)
++.+..+..|...+.+++|+|++ +|++|+.||.|++||+++++....
T Consensus 112 --------------------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 112 --------------------------------GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp --------------------------------TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred --------------------------------CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 34456777888999999999997 899999999999999999988777
Q ss_pred ec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424 324 FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 324 ~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~ 401 (645)
+. +...|.+++|+| ++++|++|+.|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||++..
T Consensus 160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 74 778899999999 99999999999999999999987765 6678999999999999999999999999999999876
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424 402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
..... + ..|...|.+++|+|++ .+|++++.|+.|++||+.+.........|...|.+++|+|++++|++++.
T Consensus 239 ~~~~~---~----~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 239 NLAGT---L----SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp CEEEE---E----CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceeEE---E----cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 64321 2 2345789999999998 79999999999999999876655555668999999999999999999999
Q ss_pred CccEEEEeCC
Q 006424 482 DCRVYVWNYD 491 (645)
Q Consensus 482 dg~I~iwd~~ 491 (645)
||+|++||+.
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999964
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-38 Score=323.05 Aligned_cols=291 Identities=20% Similarity=0.331 Sum_probs=244.5
Q ss_pred hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424 96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM 175 (645)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (645)
..+|.+|...|+.++|++++.. +++++. |+.++.|-
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~-l~s~s~------------Dg~v~iWd------------------------------- 83 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRL-LLSASQ------------DGKLIIWD------------------------------- 83 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSE-EEEEET------------TTEEEEEE-------------------------------
T ss_pred heeecCCCCceEEEEECCCCCE-EEEEeC------------CCcEEEEE-------------------------------
Confidence 4578899999999999999877 777777 66666660
Q ss_pred HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424 176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 255 (645)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (645)
.........+..|.+.|.+++|+|+|++|++|+.|+.|++|++.+...
T Consensus 84 -----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~--------------------- 131 (340)
T 1got_B 84 -----------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG--------------------- 131 (340)
T ss_dssp -----------TTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB---------------------
T ss_pred -----------CCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC---------------------
Confidence 000012344678999999999999999999999999999999976321
Q ss_pred ecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE
Q 006424 256 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ 334 (645)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~ 334 (645)
.......+.+|.+.|.++.|++++.+++++.|++|++||+.+++.+..+. |...|.+++
T Consensus 132 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 132 --------------------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191 (340)
T ss_dssp --------------------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred --------------------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEE
Confidence 01234567899999999999999999999999999999999999988885 889999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424 335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
|+| +++++++|+.|+.|++||++++.... +..|...|++++|+|++++|++|+.||.|++||++....... ...
T Consensus 192 ~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~--- 266 (340)
T 1got_B 192 LAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSH--- 266 (340)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC---
T ss_pred ECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ecc---
Confidence 999 99999999999999999999887654 677999999999999999999999999999999987654321 111
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
..+...|++++|+|+| .++++|+.|+.|++||............|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 267 -~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 -DNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -TTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 1123579999999998 8999999999999999875544444455899999999999999999999999999997
No 15
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-38 Score=377.50 Aligned_cols=382 Identities=15% Similarity=0.238 Sum_probs=301.5
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+.+|.+.|++++|+|+|++|++|+.||+|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~------------------------------------------ 646 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET------------------------------------------ 646 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------------
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC------------------------------------------
Confidence 35679999999999999999999999999999999987
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCC
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s~dg 350 (645)
+..+..+.+|.+.|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+|. ++.++++|+.|+
T Consensus 647 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 647 ---GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp ---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred ---CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 45567888999999999999997 99999999999999999999988884 8899999999983 334899999999
Q ss_pred cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe--------------------
Q 006424 351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD-------------------- 409 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------------------- 409 (645)
.|++||+++++... +.+|...|++++|+|+++++++++.||.|++||+.+.........
T Consensus 724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 99999999987654 678999999999999999999999999999999976543211100
Q ss_pred ----------------------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC
Q 006424 410 ----------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS 461 (645)
Q Consensus 410 ----------------------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 461 (645)
.......|...+.+++|+|++ .++++++.|+.|++||............|.
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 000011456789999999997 899999999999999998776666666799
Q ss_pred CCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC---------------------------CcceeeeeecCC
Q 006424 462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN---------------------------SVRSCEHFFSEG 514 (645)
Q Consensus 462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~~~~g 514 (645)
..|.+++|+|++++|++++.||.|++||+.+.......... .........+..
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 99999999999999999999999999997643211100000 000111233456
Q ss_pred cEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCC
Q 006424 515 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDG 592 (645)
Q Consensus 515 ~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~ 592 (645)
.+.+++|+|++..++..+.++. +.+|+...... ....|...+++++|+|||+++++++. |+.|++||+.++.
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~---i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~i~vwd~~~~~-- 1036 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGA---IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGD-- 1036 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSC---CEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-SSBEEEEETTTTE--
T ss_pred cEEEEEEcCCCCEEEEEcCCCC---EEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc--
Confidence 7889999999999987776643 45666543332 45567888999999999999999998 9999999998872
Q ss_pred CcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEec
Q 006424 593 YCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
... ...+...+ ..+++ +..+++++.||+|++|+..
T Consensus 1037 --------~~~--~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1037 --------YVF--LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp --------EEC--CBCCSSCEEEEEECS--SSEEEEEESSSEEEEEETT
T ss_pred --------eEE--EecCCCcEEEEEEcC--CCcEEEEECCCcEEEEECC
Confidence 111 11222222 33444 4458899999999999963
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=323.92 Aligned_cols=256 Identities=16% Similarity=0.251 Sum_probs=201.9
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
..|...|.+++|+|||++|++++ |+++++||...... .. ......
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~-----~~-----------------------------~~~~~~ 71 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLF-----KD-----------------------------PCAAPN 71 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEE-----SS-----------------------------GGGTTC
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeee-----cc-----------------------------ccccCC
Confidence 35778899999999999999888 77889987432000 00 000000
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-----cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.........|...|.+++|+|++.|++|+.||+|++||+++++.+..+ +|...|++++|+| ++++|++|+.|++
T Consensus 72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~ 150 (344)
T 4gqb_B 72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC 150 (344)
T ss_dssp GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence 111222334678899999999999999999999999999988754432 5899999999999 9999999999999
Q ss_pred EEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
|++||+++++++. +.+|...|++++|+|++. ++++++.||.|++||+++.+.... +... .+...+.+++|+|+
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~----~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IGCS----APGYLPTSLAWHPQ 225 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-eecc----eeeccceeeeecCC
Confidence 9999999988765 677999999999999885 788999999999999988765332 1111 22467899999998
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~ 493 (645)
+..++++|+.|+.|++||++..........|...|++++|+|++ ++|++|+.||+|+|||+.++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 76899999999999999988554444445588999999999998 58999999999999998765
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=321.42 Aligned_cols=249 Identities=16% Similarity=0.279 Sum_probs=211.3
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
...++|++|.+.|++++|+|++++|+||+.||+|++||..+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--------------------------------------- 95 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT--------------------------------------- 95 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence 35677999999999999999999999999999999999876
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe------EEEE-ecCCCcEEEEEEeeCCCCE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ------CLNV-FDHHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~------~~~~-~~~~~~v~~l~~~p~~~~~ 342 (645)
......+..|...|.+++|+|++ .+++|+.|+.+++|++.... .... ..|...|.+++|+| ++..
T Consensus 96 ------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 168 (354)
T 2pbi_B 96 ------TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQ 168 (354)
T ss_dssp ------CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSE
T ss_pred ------CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCE
Confidence 33456677788999999999998 89999999999999986431 2222 35899999999999 8999
Q ss_pred EEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 343 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
|++++.|++|++||+++++... +.+|...|.+++|+| +|++|++|+.||.|++||+++...... + ..|..
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~---~----~~h~~ 241 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA---F----ETHES 241 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE---E----CCCSS
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE---e----cCCCC
Confidence 9999999999999999987664 678999999999988 578999999999999999998764322 2 22457
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.|.+++|+|++ .++++++.|+.|++||++.... .+....+...+.+++|+|++++|++|+.|+.|++||+.++
T Consensus 242 ~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 242 DVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999997 8999999999999999875433 3333334457899999999999999999999999999765
No 18
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-39 Score=368.19 Aligned_cols=390 Identities=12% Similarity=0.050 Sum_probs=274.0
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~------------------------------------------- 49 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV------------------------------------------- 49 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-------------------------------------------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-------------------------------------------
Confidence 3489999999999999999999999999999997652
Q ss_pred cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
..... ..|...|.+++|+|+.+|++++.|++|++||+.+++++..+.|...|++++|+| +++++++|+.||.|++|
T Consensus 50 --~~~~~-~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 50 --EVVIK-LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVY 125 (902)
T ss_dssp --EEEEE-CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEE
T ss_pred --EEEEE-cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEE
Confidence 11222 347889999999994479999999999999999999998888889999999999 99999999999999999
Q ss_pred eCCCCcEEE------------eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeecc----------
Q 006424 356 GVCEKRVVD------------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---------- 412 (645)
Q Consensus 356 d~~~~~~~~------------~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---------- 412 (645)
|++++++.. ..+|...|.+++|+|+ +..+++|+.||.| +||+++..... .+..+.
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFS 203 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccc
Confidence 999887642 2457889999999996 5789999999999 99998875432 222220
Q ss_pred --ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe-------ec-----------CCCCCeEEEEEec-
Q 006424 413 --RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-------GL-----------PKSGSQMSASFTT- 471 (645)
Q Consensus 413 --~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~-----------~~~~~i~~v~~sp- 471 (645)
....|...|++++|+|+| .+|++++.|+.|++||+++...... .+ .+...|.+++|++
T Consensus 204 ~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred cccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence 012234679999999997 8999999999999999875332221 11 1345799999964
Q ss_pred ---CC-CEEEEEeCC-----ccEEEEeCC---------------------------------------------------
Q 006424 472 ---TG-KHIISIGDD-----CRVYVWNYD--------------------------------------------------- 491 (645)
Q Consensus 472 ---~~-~~l~t~s~d-----g~I~iwd~~--------------------------------------------------- 491 (645)
++ .+|++|+.| +.+++|++.
T Consensus 283 ~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp SSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred CCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence 33 466777554 267777631
Q ss_pred --------------------CCCcCCCc---c-----cCCcceeeeee-----------------------cCCcEEEEe
Q 006424 492 --------------------ELCFPSSK---Q-----KNSVRSCEHFF-----------------------SEGVSVAVQ 520 (645)
Q Consensus 492 --------------------~~~~~~~~---~-----~~~~~~~~~~~-----------------------~~g~~~~v~ 520 (645)
++...... + ......+..+. +...+..++
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 11000000 0 00000011110 011122345
Q ss_pred cCCCCccccccCCCCccccCccccccccCCcc-------------CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 521 WPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI-------------RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 521 ~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~-------------~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
|+|++..|++.+.| ..+++|+........ .++...+.+++|||||+++++++. |++|++|++.
T Consensus 443 ~spdg~~laSgs~D---gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-DgtV~lwd~~ 518 (902)
T 2oaj_A 443 PAEYGTAFITGHSN---GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-TGDVVLFKYE 518 (902)
T ss_dssp CCSEEEEEEEEETT---SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-TSCEEEEEEE
T ss_pred ccccCcEEEEecCC---CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-CcEEEEEEec
Confidence 67788888877776 447788875442211 156778999999999999999998 9999999998
Q ss_pred cCCCCCc---CC-----hhh--------------------------hHhhhhhccCCC--CCccCCCCcceEEEEecCCC
Q 006424 588 IDSDGYC---QD-----PQQ--------------------------QRLQQQCLNNVD--DVRAISATWGLVIVTAGCDG 631 (645)
Q Consensus 588 ~~~~~~~---~~-----~~~--------------------------~~~~~~~~~~~~--~~~~~~~~d~~~ivt~s~Dg 631 (645)
+++.... .. ..+ ..+......|.+ ..++|++ || +||+|+.||
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~ 596 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAG 596 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTS
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCC
Confidence 7621000 00 000 000111122333 3355555 79 999999999
Q ss_pred eEeEEEecCc
Q 006424 632 MIKTFHNYGL 641 (645)
Q Consensus 632 ~Iriw~~~g~ 641 (645)
+||+|++.+-
T Consensus 597 tv~lwd~~~~ 606 (902)
T 2oaj_A 597 SLMLIDRRGP 606 (902)
T ss_dssp EEEEEETTTT
T ss_pred cEEEEECCCC
Confidence 9999998764
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.9e-39 Score=334.42 Aligned_cols=299 Identities=18% Similarity=0.333 Sum_probs=240.5
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.....++|++|.+.|++++|+|++++|+||+.||+|++||+.+
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~------------------------------------- 97 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT------------------------------------- 97 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------------------
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence 3446678999999999999999999999999999999999986
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-------EEEEe-cCCCcEEEEEEeeCC
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPID 339 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-------~~~~~-~~~~~v~~l~~~p~~ 339 (645)
......+.+|...|.+++|+|++ +|++|+.|+.|++||+.+.. ....+ +|...|.++.|.|.+
T Consensus 98 --------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~ 169 (380)
T 3iz6_a 98 --------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ 169 (380)
T ss_dssp --------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS
T ss_pred --------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC
Confidence 34467788899999999999998 89999999999999986532 12223 588899999999955
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEe------eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~~------~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 412 (645)
+..|++|+.|++|++||+++++.... .+|...|.+++|++ +++++++|+.||.|++||++........+
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---- 245 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---- 245 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE----
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE----
Confidence 67899999999999999999887653 46788999999987 88999999999999999998543332222
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee--EeecC-----CCCCeEEEEEecCCCEEEEEeCCccE
Q 006424 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLP-----KSGSQMSASFTTTGKHIISIGDDCRV 485 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~-----~~~~i~~v~~sp~~~~l~t~s~dg~I 485 (645)
..|...|.+++|+|++ .+|++++.|++|++||++..... +.... +...|.+++|+|+|++|++|+.||.|
T Consensus 246 --~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 246 --HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp --CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred --CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 2245789999999998 89999999999999998854433 22211 12348999999999999999999999
Q ss_pred EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcccc
Q 006424 486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 565 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs 565 (645)
++||+..++.. ..+. .....|...+.+++|+
T Consensus 323 ~vwd~~~~~~~--------------------~~~~-----------------------------~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 323 YVWDTLLAEMV--------------------LNLG-----------------------------TLQNSHEGRISCLGLS 353 (380)
T ss_dssp EEEETTTCCEE--------------------EEEC-----------------------------CSCSSCCCCCCEEEEC
T ss_pred EEEECCCCceE--------------------EEEe-----------------------------cccCCCCCceEEEEEC
Confidence 99998755210 0000 0012345567788899
Q ss_pred CCCCCCcCCCCCCCcCCCCCCccC
Q 006424 566 NDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 566 ~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
|||++++++++ |+.|++|++...
T Consensus 354 ~dg~~l~sgs~-D~~i~iW~~~~~ 376 (380)
T 3iz6_a 354 SDGSALCTGSW-DKNLKIWAFSGH 376 (380)
T ss_dssp SSSSEEEEECT-TSCEEEEECCSS
T ss_pred CCCCEEEEeeC-CCCEEEEecCCC
Confidence 99999999888 899999998765
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=318.16 Aligned_cols=253 Identities=23% Similarity=0.367 Sum_probs=208.8
Q ss_pred ccccccccccC-cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 191 YTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 191 ~~~~~l~~H~~-~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
...+++.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++....
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------------------- 52 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------------------- 52 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE---------------------------------
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee---------------------------------
Confidence 35677889998 99999999999999999999999999987632110
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~~~~l~s 345 (645)
......+|...|.+++|+|++ +|++|+.|++|++||+..+. ++..+ +|...|.+++|+| ++++|++
T Consensus 53 ---------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s 122 (345)
T 3fm0_A 53 ---------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT 122 (345)
T ss_dssp ---------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred ---------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEE
Confidence 112235899999999999997 89999999999999998764 45555 4899999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 346 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
|+.|++|++||++++. ...+..|...|.+++|+|++++|++|+.|+.|++||.+....... ..+ ..|...|
T Consensus 123 ~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~----~~h~~~v 197 (345)
T 3fm0_A 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-ATL----EGHESTV 197 (345)
T ss_dssp EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EEE----CCCSSCE
T ss_pred EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EEe----cCCCCce
Confidence 9999999999998753 234667899999999999999999999999999999987653211 112 2346889
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcc-----------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-----------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
.+++|+|+| .+|++++.|+.|++||.... ...+. ..|...|.+++|+|++..|++++.|+.
T Consensus 198 ~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 198 WSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred EEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 999999998 89999999999999995211 11111 127789999999999999999999999
Q ss_pred EEEEeCCCC
Q 006424 485 VYVWNYDEL 493 (645)
Q Consensus 485 I~iwd~~~~ 493 (645)
|++|+....
T Consensus 276 i~vw~~~~~ 284 (345)
T 3fm0_A 276 IRVFQEDPN 284 (345)
T ss_dssp EEEEEECTT
T ss_pred EEEEEeCCC
Confidence 999998765
No 21
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-38 Score=360.32 Aligned_cols=251 Identities=16% Similarity=0.275 Sum_probs=220.0
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
...+.+.+|.+.|++++|+|+|++||+|+.||.|++||+.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~--------------------------------------- 44 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET--------------------------------------- 44 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC---------------------------------------
Confidence 35677899999999999999999999999999999999987
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
+..+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++|+| ++.+|++++.
T Consensus 45 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 117 (814)
T 3mkq_A 45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD 117 (814)
T ss_dssp ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred ------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence 44567788999999999999987 89999999999999999999888875 899999999999 9999999999
Q ss_pred CCcEEEEeCCCC-cE-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 349 DGKVRIWGVCEK-RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 349 dg~i~vwd~~~~-~~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
||.|++||+.++ .. ..+..|...|.+++|+| +++.+++++.||.|++||+.......... .+ +...+.+++
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~-----~~~~v~~~~ 191 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TG-----QERGVNYVD 191 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-CC-----CTTCCCEEE
T ss_pred CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-cC-----CCCCEEEEE
Confidence 999999999876 33 34677899999999999 88999999999999999998765433221 11 236799999
Q ss_pred EcC--CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 426 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 426 ~s~--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
|+| ++ .++++++.||.|++||............|...|.+++|+|++++|++++.||.|++||+.++.
T Consensus 192 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp ECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred EEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999 76 799999999999999988655555555588899999999999999999999999999998764
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.7e-37 Score=316.20 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=238.2
Q ss_pred ccccccccccCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcc
Q 006424 191 YTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 264 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~f-----sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (645)
....+|++|.+.|++++| ++ ++++|+||+.||+|++||+.+.....
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---------------------------- 63 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---------------------------- 63 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------------------
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------------------
Confidence 356679999999999999 77 89999999999999999987532100
Q ss_pred eeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCE
Q 006424 265 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~ 342 (645)
..+.+...+.+|...|.+++|+|++ ++++|+.|++|++||+++++.+..+. |...|.+++|+| ++++
T Consensus 64 ----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~ 132 (343)
T 2xzm_R 64 ----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQ 132 (343)
T ss_dssp ----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTE
T ss_pred ----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCE
Confidence 0023356788999999999999987 89999999999999999999888774 999999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEee---ccCCCeEEEEEccCC----------CEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 343 FISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~v~~l~~sp~g----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
|++++.|++|++||+......... .|...|.+++|+|++ .++++++.||.|++||... .. ...
T Consensus 133 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-~~~-- 208 (343)
T 2xzm_R 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI-RYT-- 208 (343)
T ss_dssp EEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE-EEE--
T ss_pred EEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce-eEE--
Confidence 999999999999999865555443 688899999999987 7899999999999999432 21 111
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
+. .|...|.+++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++.+++++ .|+.|++||
T Consensus 209 ~~----~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 209 FK----AHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp EE----CCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred Ec----CccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence 22 245789999999998 899999999999999985322211222245679999999999888755 578899999
Q ss_pred CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCC
Q 006424 490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP 569 (645)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~ 569 (645)
+.+..... +.. +.+.. +. ......++...+.+++|+|+|+
T Consensus 283 ~~~~~~~~------------------~~~--~~~~~--~~------------------~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 283 LMTQSKAP------------------VCT--IEAEP--IT------------------KAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SSSCCSCS------------------EEE--CCCCS--GG------------------GBTTBCCSCCCEEEEEECSSSC
T ss_pred eCCCCCCc------------------eEE--eecCc--ch------------------hhhhhcCCCCceEEEEECCCCC
Confidence 97653211 000 00000 00 0001223455678889999999
Q ss_pred CCcCCCCCCCcCCCCCCccC
Q 006424 570 CRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 570 ~l~s~s~~d~~i~iWd~~~~ 589 (645)
++++++. |+.|++|++.++
T Consensus 323 ~l~sg~~-Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFT-DGVIRTFSFETS 341 (343)
T ss_dssp CEEEEET-TSEEEEEEEEEE
T ss_pred eEEEecC-CceEEEEEEEcc
Confidence 9998888 899999998765
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-38 Score=331.12 Aligned_cols=286 Identities=22% Similarity=0.330 Sum_probs=242.8
Q ss_pred hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424 97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME 176 (645)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (645)
..|.+|...|..+.|+|++.. +++.+. |+.++.|-
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~-l~s~s~------------Dg~i~vwd-------------------------------- 136 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSV-MVSASE------------DATIKVWD-------------------------------- 136 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSE-EEEEES------------SSCEEEEE--------------------------------
T ss_pred EeecccCCcEEEEEEcCCCCE-EEEEeC------------CCeEEEEE--------------------------------
Confidence 467899999999999998776 777777 66655550
Q ss_pred hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe
Q 006424 177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 256 (645)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (645)
.......+++++|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 137 ----------~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~------------------------- 181 (410)
T 1vyh_C 137 ----------YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG------------------------- 181 (410)
T ss_dssp ----------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-------------------------
T ss_pred ----------CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------------------------
Confidence 000113456889999999999999999999999999999999976
Q ss_pred cccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE
Q 006424 257 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ 334 (645)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~ 334 (645)
...+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++.++..+. |...|.++.
T Consensus 182 --------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 182 --------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp --------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred --------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 34567788999999999999987 89999999999999999999988874 888999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccC--------------------CCEEEEEecCCeE
Q 006424 335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD--------------------GKGFIVGSITGTC 393 (645)
Q Consensus 335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~--------------------g~~l~~g~~dg~i 393 (645)
|+| ++.++++|+.|++|++||+++++... +..|...|.+++|+|+ |.++++|+.||.|
T Consensus 242 ~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 242 PNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 999 99999999999999999999877654 6789999999999996 6789999999999
Q ss_pred EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424 394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
++||+++...... +. .|...|.+++|+|+| .+|++++.|+.|++||............|...|++++|+|++
T Consensus 321 ~iwd~~~~~~~~~---~~----~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 321 KMWDVSTGMCLMT---LV----GHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp EEEETTTTEEEEE---EE----CCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred EEEECCCCceEEE---EE----CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 9999987764322 22 245789999999998 799999999999999987544333444588899999999999
Q ss_pred CEEEEEeCCccEEEEeCC
Q 006424 474 KHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~ 491 (645)
.+|++|+.||+|++|+++
T Consensus 393 ~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEETTSEEEEEC--
T ss_pred CEEEEEeCCCcEEEEeCC
Confidence 999999999999999863
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-37 Score=323.04 Aligned_cols=314 Identities=17% Similarity=0.243 Sum_probs=238.9
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+|.+.|++++|+|||++||+|+ |+.+++|++.++............. .....
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~ 113 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN 113 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence 6999999999999999999987 6889999998865433211100000 00000
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|++|++|
T Consensus 114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence 0011122345569999999997 89999999999999999999888775 899999999999 99999999999999999
Q ss_pred eCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 356 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 356 d~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
|+++++......+...+.+++|+| +++++++|+.||.|++||+++................|...|.+++|+|+| .+|
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l 271 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV 271 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence 999998887777888999999999 899999999999999999987764322111111123456899999999998 899
Q ss_pred EEEECCCeEEEEECCcc------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424 435 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 502 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~~------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 502 (645)
++++.|+.|++||+... ........|...|.+++|+|++++|++|+.||.|++||+.++...
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~------ 345 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL------ 345 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE------
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE------
Confidence 99999999999997632 112233458889999999999999999999999999999876321
Q ss_pred CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424 503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 582 (645)
Q Consensus 503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~ 582 (645)
...-.+.+.+.+++|+++. .|+|++.++++++. |++|+
T Consensus 346 ----~~l~~h~~~v~~v~~~~~~-------------------------------------~~~p~~~~l~sgs~-Dg~i~ 383 (393)
T 1erj_A 346 ----LMLQGHRNSVISVAVANGS-------------------------------------SLGPEYNVFATGSG-DCKAR 383 (393)
T ss_dssp ----EEEECCSSCEEEEEECSSC-------------------------------------TTCTTCEEEEEEET-TSEEE
T ss_pred ----EEECCCCCCEEEEEecCCc-------------------------------------CcCCCCCEEEEECC-CCcEE
Confidence 1111245567777776542 25677888888888 89999
Q ss_pred CCCCccC
Q 006424 583 LWDVTID 589 (645)
Q Consensus 583 iWd~~~~ 589 (645)
+|++...
T Consensus 384 iW~~~~~ 390 (393)
T 1erj_A 384 IWKYKKI 390 (393)
T ss_dssp EEEEEEC
T ss_pred ECccccc
Confidence 9987654
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.1e-37 Score=311.68 Aligned_cols=299 Identities=16% Similarity=0.256 Sum_probs=239.5
Q ss_pred cccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCC
Q 006424 91 EANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKP 170 (645)
Q Consensus 91 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (645)
+...|..+|.+|...|..++|++.+...+++++. |++++.|-. ...
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~------------D~~v~~W~~--------------~~~-------- 50 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASR------------DKTLISWKL--------------TGD-------- 50 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEEE--------------EEE--------
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecC------------CccEEEecC--------------CCC--------
Confidence 3445667899999999999999976444778877 776666610 000
Q ss_pred ccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCC
Q 006424 171 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 250 (645)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 250 (645)
........+++++|...|++++|+|+|++|++|+.||+|++||+.+
T Consensus 51 ---------------~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~------------------- 96 (319)
T 3frx_A 51 ---------------DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT------------------- 96 (319)
T ss_dssp ---------------TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------
T ss_pred ---------------CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------
Confidence 0000113456889999999999999999999999999999999987
Q ss_pred CceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCc
Q 006424 251 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 329 (645)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 329 (645)
++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++........+|...
T Consensus 97 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~ 150 (319)
T 3frx_A 97 --------------------------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150 (319)
T ss_dssp --------------------------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred --------------------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCc
Confidence 44567888999999999999987 899999999999999986555445579999
Q ss_pred EEEEEEeeC-----CCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 330 VTCVQFNPI-----DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 330 v~~l~~~p~-----~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
|.+++|.|. ++..+++++.|+.|++||+++.+... +.+|...|.+++|+|+|++|++|+.||.|++||+.+...
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999982 23489999999999999999877654 678999999999999999999999999999999988764
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee--------cCCCCCeEEEEEecCCCE
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--------~~~~~~i~~v~~sp~~~~ 475 (645)
... + .. ...+.+++|+|++ .++++++. +.+++|++......... ..+...+.+++|+|+|++
T Consensus 231 ~~~-~--~~-----~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 231 MYT-L--SA-----QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp EEE-E--EC-----CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred EEE-e--cC-----CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 322 2 22 2679999999997 77777765 45999997643222211 124567899999999999
Q ss_pred EEEEeCCccEEEEeCCCC
Q 006424 476 IISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 476 l~t~s~dg~I~iwd~~~~ 493 (645)
|++|+.||.|++||+.++
T Consensus 301 l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTSCEEEEEEEEC
T ss_pred EEEeecCceEEEEEEeec
Confidence 999999999999998754
No 26
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-36 Score=335.70 Aligned_cols=421 Identities=16% Similarity=0.114 Sum_probs=292.7
Q ss_pred cccccccccCc-EEEEEECC--CCCEEEEEeCCCcEEEEEcCCC--------ceeeeEecCCCCc--ccCCCCce-EEec
Q 006424 192 TSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AASCKSFTDDGGF--GSNAKEGK-IKFG 257 (645)
Q Consensus 192 ~~~~l~~H~~~-V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~--------~~~~~~~~~~~~~--~~~~~~~~-~~~~ 257 (645)
..+.+.+|.+. |++++|+| ++++|++|+.||.|++||+.++ ............. ......+. +...
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 134 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence 45668899999 99999999 9999999999999999999754 1111111111111 00001111 1111
Q ss_pred ccC-CCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCC---cE
Q 006424 258 KKK-SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN---YV 330 (645)
Q Consensus 258 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~---~v 330 (645)
... .....+..+ + ....+..+.+|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+. |.. .|
T Consensus 135 ~~~~~~~~~v~~~----d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v 209 (615)
T 1pgu_A 135 GEGRDNFGVFISW----D-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 209 (615)
T ss_dssp ECCSSCSEEEEET----T-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred ccCCCCccEEEEE----E-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceE
Confidence 100 001112111 1 245677888999999999999987 79999999999999999999988886 777 89
Q ss_pred EEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEEee-----ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 331 TCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 331 ~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
.+++|+| + ++++++++.|+.|++||+++++..... .|...|.+++|+ +++++++++.||.|++||+++....
T Consensus 210 ~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 210 RDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 9999999 7 999999999999999999998877755 899999999999 9999999999999999999876643
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCC----------------------
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG---------------------- 462 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~---------------------- 462 (645)
. .+..+ .......+.++.|. ++ .++++++.|+.|++||............|..
T Consensus 288 ~-~~~~~--~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w 362 (615)
T 1pgu_A 288 Q-KWTLD--KQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEW 362 (615)
T ss_dssp E-EEECC--TTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEET
T ss_pred E-EEcCC--CCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEE
Confidence 2 22222 11223567888886 54 7999999999999999875333333333444
Q ss_pred -----------CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC----------------------------C-----
Q 006424 463 -----------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS----------------------------S----- 498 (645)
Q Consensus 463 -----------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~----------------------------~----- 498 (645)
.|.+++| +++.+|++++.||.|++||+.++.... .
T Consensus 363 ~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 363 SSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 4444555 336667777777777777664321000 0
Q ss_pred --------------------ccc-CCcce-----------eeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424 499 --------------------KQK-NSVRS-----------CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546 (645)
Q Consensus 499 --------------------~~~-~~~~~-----------~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~ 546 (645)
... ..... .....+.+.+.+++|+|++.+|++.+.++ .+.+|+..
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~ 518 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQ 518 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC---eEEEeeCC
Confidence 000 00000 11122467789999999999999887764 35677764
Q ss_pred ccCC--ccCC-CCccccCccccC----------CCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC
Q 006424 547 ETAP--WIRD-SERFSLGSWFSN----------DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV 613 (645)
Q Consensus 547 ~~~~--~~~~-~~~~~~~~~fs~----------dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (645)
.... .... +...+++++|+| |++++++++. |+.|++||+.++... ......|......
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~--------~~~~~~h~~~v~~ 589 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKI--------IKALNAHKDGVNN 589 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTTCC--------EEETTSSTTCEEE
T ss_pred CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCcee--------chhhhcCccceEE
Confidence 4333 3344 788899999999 9999999998 999999999886200 0111122222233
Q ss_pred ccCCCCcceEEEEecCCCeEeEEEec
Q 006424 614 RAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 614 ~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
+.|++ |+. |+|++.||+|++|++.
T Consensus 590 l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 590 LLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred EEEcC-CCC-eEEecCCceEEEEeee
Confidence 45555 688 9999999999999974
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.6e-36 Score=302.99 Aligned_cols=293 Identities=26% Similarity=0.450 Sum_probs=236.8
Q ss_pred ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
...+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~------------------------------------- 54 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------------------------------------- 54 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------------------------------------
Confidence 3456677899999999999999999999999999999999876
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~ 346 (645)
++....+.+|...|.+++|+|++ +|++|+.|+.|++||+++++++..+. |...|.+++|+| +++++++|
T Consensus 55 --------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~ 125 (312)
T 4ery_A 55 --------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125 (312)
T ss_dssp --------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEE
T ss_pred --------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEE
Confidence 34456778999999999999987 89999999999999999999888775 889999999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.|+.|++||+++++... +..|...|.+++|+|+++++++++.||.|++||+++........ ..+...+.+++
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~ 199 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVK 199 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CSSCCCEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe------ccCCCceEEEE
Confidence 999999999999877654 66788999999999999999999999999999998776432211 12246799999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC--eEEEEEe-cCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS--QMSASFT-TTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 502 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~--i~~v~~s-p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 502 (645)
|+|++ .++++++.|+.|++||+...........|... .....++ +++.+|++|+.||.|++||+.+++...
T Consensus 200 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~----- 273 (312)
T 4ery_A 200 FSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ----- 273 (312)
T ss_dssp ECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE-----
T ss_pred ECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh-----
Confidence 99998 89999999999999998865443333333332 2233444 678999999999999999998763211
Q ss_pred CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
....+.+.+..++|+|++..+++.+.+ ....+++|+.
T Consensus 274 -----~~~~h~~~v~~~~~~p~~~~l~s~~~~-~d~~i~~W~~ 310 (312)
T 4ery_A 274 -----KLQGHTDVVISTACHPTENIIASAALE-NDKTIKLWKS 310 (312)
T ss_dssp -----EECCCSSCEEEEEECSSSSEEEEEECT-TTCCEEEEEC
T ss_pred -----hhhccCCcEEEEeecCcCCceEEEEcc-CCccEEEecC
Confidence 112345678899999999988865421 1233556654
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-37 Score=324.40 Aligned_cols=305 Identities=21% Similarity=0.297 Sum_probs=246.3
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
...+|.+|...|+.+.|+|++.. +++++. |++++.|-
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~------------D~~v~iWd------------------------------ 94 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNW-IVSASQ------------DGRLIVWN------------------------------ 94 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEET------------TSEEEEEE------------------------------
T ss_pred EeecccccccEEEEEEEcCCCCE-EEEEeC------------CCeEEEEE------------------------------
Confidence 45689999999999999999887 888888 77777660
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (645)
.........+++|...|.+++|+|+|++|++|+.|+.+++||+.+.....
T Consensus 95 ------------~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~------------------ 144 (380)
T 3iz6_a 95 ------------ALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD------------------ 144 (380)
T ss_dssp ------------TTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC------------------
T ss_pred ------------CCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc------------------
Confidence 00011234577899999999999999999999999999999987521100
Q ss_pred EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe------cC
Q 006424 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DH 326 (645)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~------~~ 326 (645)
........+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++.+..+ .|
T Consensus 145 --------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 145 --------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp --------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred --------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 0122345678999999999999863 7999999999999999999988776 37
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
...|.+++|+|.++++|++|+.|++|++||++. .....+.+|...|++++|+|++++|++|+.||+|++||+++....
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 889999999886889999999999999999974 334557789999999999999999999999999999999987643
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee----cCCCCCeEEEEEecCCCEEEEEe
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
............+...+++++|+|+| .++++|+.||.|++||.......... ..|.+.|.+++|+|+|++|++|+
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred EEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 22111111111223458999999998 89999999999999997644333332 45889999999999999999999
Q ss_pred CCccEEEEeCCCC
Q 006424 481 DDCRVYVWNYDEL 493 (645)
Q Consensus 481 ~dg~I~iwd~~~~ 493 (645)
.||+|++|++...
T Consensus 364 ~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 364 WDKNLKIWAFSGH 376 (380)
T ss_dssp TTSCEEEEECCSS
T ss_pred CCCCEEEEecCCC
Confidence 9999999999765
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=309.50 Aligned_cols=319 Identities=15% Similarity=0.177 Sum_probs=231.9
Q ss_pred CCceeeccCcc-CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE----ecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 278 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 278 ~~~~~l~~h~~-~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
..+..+.+|.. .|++++|+|++ +|++|+.|++|++||+.++..... .+|...|.+++|+| ++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence 34678889988 99999999998 899999999999999988764322 25899999999999 9999999999999
Q ss_pred EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
+++||+..+. ...+.+|...|.+++|+|++++|++|+.|+.|++||+...........+ ..|...|.+++|+|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL----NSHTQDVKHVVWHP 160 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE----CCCCSCEEEEEECS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe----cCcCCCeEEEEECC
Confidence 9999998764 3456789999999999999999999999999999999876432211112 23457899999999
Q ss_pred CCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424 429 DESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS 506 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 506 (645)
++ .+|++++.|+.|++||.... ........|...|.+++|+|++++|++|+.||+|++||.......... .
T Consensus 161 ~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~------~ 233 (345)
T 3fm0_A 161 SQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV------A 233 (345)
T ss_dssp SS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC------C
T ss_pred CC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc------e
Confidence 97 79999999999999997643 233344558899999999999999999999999999997443211100 0
Q ss_pred eeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424 507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 586 (645)
Q Consensus 507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~ 586 (645)
+.. . .+....+... ...+...+.+++|+|++..+++++. |+.|++|+.
T Consensus 234 ~~~--~---------~~~~~~~~~~--------------------~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~ 281 (345)
T 3fm0_A 234 CSG--S---------DPSWKCICTL--------------------SGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQE 281 (345)
T ss_dssp CC--------------CEEEEEEEE--------------------CSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEE
T ss_pred eec--c---------CCccceeEEe--------------------cCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEe
Confidence 000 0 0000000000 0114456777888999998888887 899999987
Q ss_pred ccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424 587 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG 640 (645)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g 640 (645)
....................|......++++|.++.+|||||.||+|++|+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 765211100000000001122222333566675446999999999999999753
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-36 Score=312.83 Aligned_cols=295 Identities=18% Similarity=0.250 Sum_probs=242.7
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
...+|.+|...|+.++|+|++.. +++.+. |+.++.|- .
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~------------Dg~v~vWd----------~------------------- 93 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRR-IVSSSQ------------DGKVIVWD----------S------------------- 93 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSE-EEEEET------------TSEEEEEE----------T-------------------
T ss_pred EEEEecCCCCeEEEEEECCCCCE-EEEEeC------------CCeEEEEE----------C-------------------
Confidence 34578999999999999999877 888888 77766660 0
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (645)
......+.+..|...|.+++|+|+|.+|++|+.|+.+++|++.......
T Consensus 94 -------------~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~------------------ 142 (354)
T 2pbi_B 94 -------------FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN------------------ 142 (354)
T ss_dssp -------------TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC------------------
T ss_pred -------------CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc------------------
Confidence 0001223456788899999999999999999999999999986421000
Q ss_pred EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEE
Q 006424 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC 332 (645)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~ 332 (645)
.......+.+|...|.+++|+|++ .|++++.|++|++||+++++++..+. |...|.+
T Consensus 143 ---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 143 ---------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp ---------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 012345677899999999999987 89999999999999999999988885 8899999
Q ss_pred EEEeeC-CCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 333 VQFNPI-DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 333 l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
++|+|. ++++|++|+.||.|++||+++++... +..|...|++++|+|++++|++|+.|+.|++||++...... ....
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~ 280 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSK 280 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcC
Confidence 999883 35799999999999999999988665 66789999999999999999999999999999998765322 1111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
. .+...+.+++|+|+| .++++++.|+.|++||+.+.........|...|.+++|+|+|++|++|+.||+|++|+
T Consensus 281 ~----~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 281 E----SIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp T----TCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred C----CcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 1 123578999999998 8999999999999999875544444556899999999999999999999999999996
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-36 Score=337.31 Aligned_cols=244 Identities=15% Similarity=0.220 Sum_probs=206.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|.+.|++++|+|+|++|++++ ++.|++||+.++.. ..
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~~ 53 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------KV 53 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------SS
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------cc
Confidence 6899999999999999999998 88999999986200 01
Q ss_pred CCceeeccCccC-eEEEEEcC--CC-eEEEEeCCCcEEEEecCCC--------eEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424 278 SPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 278 ~~~~~l~~h~~~-V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~--------~~~~~~~-~~~~v~~l~~~p~~~~~l~ 344 (645)
.....+.+|... |++++|+| ++ +|++++.||.|++||+.++ +....+. |...|.+++|+| ++++++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEE
Confidence 567788999999 99999999 87 8999999999999999754 5555554 889999999999 999999
Q ss_pred EEeCC----CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 345 SGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 345 s~s~d----g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
+++.+ +.|++|| .......+..|...|.+++|+|+++ .+++++.||.|++||+........ +. .|..
T Consensus 133 ~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~~----~~~~ 204 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS---DR----THHK 204 (615)
T ss_dssp EEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE---EC----SSSC
T ss_pred EeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee---ec----ccCC
Confidence 99988 6899999 3445566788999999999999998 899999999999999877654322 22 2345
Q ss_pred ---CeEEEEEcCC-CCcEEEEEECCCeEEEEECCcceeeEee-c---CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 420 ---KITGIQFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 420 ---~i~~i~~s~~-g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~---~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.|.+++|+|+ + .++++++.|+.|++||+......... . .|...|.+++|+ ++++|++++.||.|++||+.
T Consensus 205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 8999999999 7 89999999999999998765444444 3 688999999999 99999999999999999998
Q ss_pred CCC
Q 006424 492 ELC 494 (645)
Q Consensus 492 ~~~ 494 (645)
+++
T Consensus 283 ~~~ 285 (615)
T 1pgu_A 283 TSK 285 (615)
T ss_dssp TTE
T ss_pred CCc
Confidence 764
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=319.41 Aligned_cols=280 Identities=18% Similarity=0.226 Sum_probs=209.0
Q ss_pred ccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEc----CCCce------eeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 197 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAA------SCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .++.. ......
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------------------------- 96 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH------------------------- 96 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------------------------
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------------------------
Confidence 34669999999999999 9999999999999999 66431 100000
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l 343 (645)
.........+|.+.|++++|+|++ +|++++.||.|++|| .+++.+..+. |...|.+++|+| ++++|
T Consensus 97 ----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 164 (425)
T 1r5m_A 97 ----------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHI 164 (425)
T ss_dssp ----------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEE
T ss_pred ----------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEE
Confidence 000111233578899999999987 899999999999999 5566666664 889999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCcEEEe-eccCCC---------------eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 344 ISGSIDGKVRIWGVCEKRVVDW-ADVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~~~~~~-~~~~~~---------------v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
++++.|+.|++||+.+++.... ..+... +.+++|+|++ .+++++.+|.|++||+........
T Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~- 242 (425)
T 1r5m_A 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGK- 242 (425)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEE-
T ss_pred EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeee-
Confidence 9999999999999998876653 334444 8999999975 688999999999999987654322
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i 487 (645)
+ . .|...|.+++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++ ++++++.||.|++
T Consensus 243 ~--~----~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 243 L--I----GHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp E--C----CCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred e--c----cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 1 1 235789999999997 799999999999999987654444445588899999999999 9999999999999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
||+.++... .....+.+.+..++|+|++..|++.+.
T Consensus 315 ~d~~~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 315 WSLKQNTLL----------ALSIVDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp EETTTTEEE----------EEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEe----------EecccCCccEEEEEEcCCCCEEEEEEC
Confidence 999865211 011123445556666666655554443
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=305.05 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=197.7
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
...++|++|.+.|++++|+|+ +||+|+.||+|++||+..+.
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------------------------------------- 45 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------------------------------------- 45 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-------------------------------------
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-------------------------------------
Confidence 356778999999999999988 99999999999999997621
Q ss_pred CceeccCCCceee-cc-CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-------CeEEEEe-cCCCcEEEEEEeeCC
Q 006424 271 EVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPID 339 (645)
Q Consensus 271 ~~~~~~~~~~~~l-~~-h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-------~~~~~~~-~~~~~v~~l~~~p~~ 339 (645)
......+ .+ |...|.+++|+|++ +|++|+.|++|++||++. .+.+..+ +|...|.+++|+| +
T Consensus 46 ------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~ 118 (330)
T 2hes_X 46 ------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-D 118 (330)
T ss_dssp ------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-T
T ss_pred ------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-C
Confidence 1122334 34 99999999999987 899999999999999853 3445555 4899999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCC----cE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424 340 DNYFISGSIDGKVRIWGVCEK----RV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 414 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~----~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 414 (645)
+++|++|+.|++|++||++.. ++ ..+.+|...|.+++|+|++++|++|+.|+.|++||......... ..+
T Consensus 119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~~---- 193 (330)
T 2hes_X 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AVL---- 193 (330)
T ss_dssp SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EEE----
T ss_pred CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EEc----
Confidence 999999999999999999532 23 34678999999999999999999999999999999876532111 112
Q ss_pred ccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECCcc--------eeeEeec-CCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 415 KTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
..|...|.+++|+|++ ..+|++++.|++|++||+... ....... .|...|.+++|++++ +|++++.||.
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~ 272 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV 272 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence 2346889999999983 268999999999999997532 1111222 278899999999665 8999999999
Q ss_pred EEEEeCCCC
Q 006424 485 VYVWNYDEL 493 (645)
Q Consensus 485 I~iwd~~~~ 493 (645)
|++||..++
T Consensus 273 v~iw~~~~~ 281 (330)
T 2hes_X 273 LAVYEEVDG 281 (330)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999997644
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-37 Score=322.71 Aligned_cols=333 Identities=14% Similarity=0.182 Sum_probs=255.8
Q ss_pred ccCcEEEEEECCCCC-EEEEE----------eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 199 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 199 H~~~V~~l~fspdg~-~L~sg----------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
+...|.+++|+|+|+ +|++| +.||.|++||+.++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------------------------------- 57 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------------------------------- 57 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence 445789999999997 99999 8999999999987321
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC----CeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~----~~~~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
.+++..+ .|...|.+++|+|++ +|++++.||.|++||+.+ .+.+..+ .|...|.+++|+|.+++
T Consensus 58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 127 (416)
T 2pm9_A 58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN 127 (416)
T ss_dssp ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT
T ss_pred ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC
Confidence 1122333 588999999999987 899999999999999987 3455555 49999999999993389
Q ss_pred EEEEEeCCCcEEEEeCCCCc------EE-E---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424 342 YFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF 410 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~------~~-~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 410 (645)
+|++++.|+.|++||+++++ .. . ...|...|.+++|+|+ +.++++++.||.|++||++..... ..+..
T Consensus 128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~ 206 (416)
T 2pm9_A 128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-IHLSY 206 (416)
T ss_dssp BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE-EEECC
T ss_pred EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc-eEEec
Confidence 99999999999999998875 22 2 3568889999999999 789999999999999999886643 23333
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCC---eEEEEECCcc-eeeEeec-CCCCCeEEEEEec-CCCEEEEEeCCcc
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDV-IHKFKGL-PKSGSQMSASFTT-TGKHIISIGDDCR 484 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg---~I~iwd~~~~-~~~~~~~-~~~~~i~~v~~sp-~~~~l~t~s~dg~ 484 (645)
+.....|...+.+++|+|++..++++++.|+ .|++||++.. ....... .|...|.+++|+| ++++|++++.||.
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 3222233578999999999767999999999 9999998753 2222223 4888999999999 9999999999999
Q ss_pred EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC-ccccccCCCCccccCccccccccCCcc-----------
Q 006424 485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG-TEQKSLCSSSLRDCSQKWDNLETAPWI----------- 552 (645)
Q Consensus 485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~-~~l~~~~~~~~~~~~~~w~~~~~~~~~----------- 552 (645)
|++||+.+++.... ...+.+.+..++|+|++ ..+++.+.|+. +.+|+........
T Consensus 287 v~~wd~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~~l~s~~~d~~---i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 287 VLLWNPESAEQLSQ----------FPARGNWCFKTKFAPEAPDLFACASFDNK---IEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp EEEECSSSCCEEEE----------EECSSSCCCCEEECTTCTTEEEECCSSSE---EEEEESCCCCCSSCC---------
T ss_pred EEEeeCCCCcccee----------ecCCCCceEEEEECCCCCCEEEEEecCCc---EEEEEccCCCCCcccccccccccC
Confidence 99999987632111 11234556777888877 56666665533 4455542222111
Q ss_pred --------------------------CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424 553 --------------------------RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 553 --------------------------~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
..+...+.+++|||||+++++++. |+.|++|++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-d~~v~~w~~~~~ 415 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-GKGVSITNPKIS 415 (416)
T ss_dssp -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-SSCBCCBCCCCC
T ss_pred CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC-CCeEEEEEeccC
Confidence 114556779999999999999997 999999998875
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-35 Score=302.75 Aligned_cols=304 Identities=16% Similarity=0.248 Sum_probs=238.9
Q ss_pred cccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+.+..+|+||++.|++++|+|+ +++|||||.||+|+|||+.+....
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------- 74 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------- 74 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence 3456789999999999999997 689999999999999999863211
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++++++
T Consensus 75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~ 146 (340)
T 4aow_A 75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 146 (340)
T ss_dssp -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence 023456788999999999999997 89999999999999999888777664 667888889999 89999999
Q ss_pred eCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 347 SIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+.|+.+++||+....... ...|...+..++|++++ .++++++.|+.|++||+++...... +. .|...|+
T Consensus 147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~---~~----~h~~~v~ 219 (340)
T 4aow_A 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN---HI----GHTGYLN 219 (340)
T ss_dssp ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE---EC----CCSSCEE
T ss_pred cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE---ec----CCCCcEE
Confidence 999999999998765443 56788899999998865 5788999999999999988765322 22 2457899
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 502 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~ 502 (645)
+++|+|++ .+|++++.|+.|++||+.......... +...+.+++|+|++.++ +++.|+.|++||+++......
T Consensus 220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~---- 292 (340)
T 4aow_A 220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDE---- 292 (340)
T ss_dssp EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEE----
T ss_pred EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEe----
Confidence 99999998 899999999999999988655544433 55689999999987655 556799999999986521100
Q ss_pred CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424 503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 582 (645)
Q Consensus 503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~ 582 (645)
+.. ... ......+...+++++|+|||+++++++. |+.|+
T Consensus 293 -------~~~--~~~-------------------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~ 331 (340)
T 4aow_A 293 -------LKQ--EVI-------------------------------STSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVR 331 (340)
T ss_dssp -------ECC--C--------------------------------------CCCCCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred -------ccc--cce-------------------------------eeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEE
Confidence 000 000 0001234556777888888888888887 89999
Q ss_pred CCCCccC
Q 006424 583 LWDVTID 589 (645)
Q Consensus 583 iWd~~~~ 589 (645)
+||+.+|
T Consensus 332 iW~~~tG 338 (340)
T 4aow_A 332 VWQVTIG 338 (340)
T ss_dssp EEEEEC-
T ss_pred EEeCCCc
Confidence 9999987
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.5e-37 Score=351.00 Aligned_cols=414 Identities=15% Similarity=0.145 Sum_probs=307.6
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
+..+|.+|...|..++|+|++.. +++.+. ++.++.|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~-la~~~~------------~g~v~iw------------------------------- 40 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPW-VLTTLY------------SGRVEIW------------------------------- 40 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSE-EEEEET------------TSEEEEE-------------------------------
T ss_pred cceeeecCCCceEEEEECCCCCE-EEEEeC------------CCEEEEE-------------------------------
Confidence 34578899999999999999876 555544 3333333
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (645)
. .......+++.+|.+.|++++|+|++++|++|+.||.|++||+.+
T Consensus 41 ----d-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----------------------- 86 (814)
T 3mkq_A 41 ----N-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT----------------------- 86 (814)
T ss_dssp ----E-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----------------------
T ss_pred ----E-------CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------------------
Confidence 0 001113456778999999999999999999999999999999987
Q ss_pred EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEE
Q 006424 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVT 331 (645)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~ 331 (645)
++.+..+.+|.+.|++++|+|++ +|++++.||.|++||+.++ .....+ .|...|.
T Consensus 87 ----------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 87 ----------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp ----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred ----------------------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 44567788999999999999998 8999999999999999887 555555 4889999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-ee-ccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~-~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
+++|+|.+++.+++++.||.|++||+.++.... .. .+...+.+++|+| ++.++++++.||.|++||+.+..... .
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~ 223 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-T 223 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-E
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-E
Confidence 999999667899999999999999998765433 33 3448899999999 99999999999999999998766432 2
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--EEEEEeCCccE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRV 485 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I 485 (645)
+ . .|...|.+++|+|++ .++++++.||.|++||............+...+.+++|+|++. +++++ .++.+
T Consensus 224 ~--~----~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~ 295 (814)
T 3mkq_A 224 L--E----GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF 295 (814)
T ss_dssp E--E----CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEE
T ss_pred E--c----CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCE
Confidence 2 2 234789999999998 7999999999999999886555555555788999999999987 45555 46778
Q ss_pred EEEeCCCCCcCCCcccCC---------------------------------cceeeeeecCCcEEEEecCCCCccccccC
Q 006424 486 YVWNYDELCFPSSKQKNS---------------------------------VRSCEHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
.+|++............. ........+...+..++|+|+|..++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 889886543211110000 00000011233456899999999888766
Q ss_pred CCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC
Q 006424 533 SSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD 612 (645)
Q Consensus 533 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (645)
.+ .+.+|+.. .+...+...+.+++|||||+++++++. ++.|++|+.-.+ +.....
T Consensus 376 ~~----~~~i~~~~---~~~~~~~~~i~~~~~spdg~~la~~~~-~g~v~l~~~~~~-----------------~~~~v~ 430 (814)
T 3mkq_A 376 DG----EYVIYTAL---AWRNKAFGKCQDFVWGPDSNSYALIDE-TGQIKYYKNFKE-----------------VTSWSV 430 (814)
T ss_dssp TT----EEEEEETT---TTEEEEEEECSEEEECTTSSCEEEECT-TCCEEEEETTEE-----------------CTTCCC
T ss_pred CC----EEEEEECc---cccccCCCceEEEEEeCCCCeEEEEeC-CCcEEEEECCCC-----------------ccceEE
Confidence 42 33455532 122223456788999999999999887 899999964333 112223
Q ss_pred CccCCCCcc---eEEEEecCCCeEeEEEec-Cccc
Q 006424 613 VRAISATWG---LVIVTAGCDGMIKTFHNY-GLPI 643 (645)
Q Consensus 613 ~~~~~~~d~---~~ivt~s~Dg~Iriw~~~-g~~~ 643 (645)
...+++ || ..|++++.||+|++|++. |.++
T Consensus 431 ~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~ 464 (814)
T 3mkq_A 431 PMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTLV 464 (814)
T ss_dssp CCSSCC-CEEECSSSEEEEETTEEEEECTTTCCEE
T ss_pred cCCcCc-cceecceEEEEecCCEEEEEECCcCcEE
Confidence 345555 56 489999999999999964 4443
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-35 Score=295.84 Aligned_cols=252 Identities=19% Similarity=0.298 Sum_probs=208.5
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~----------------------------------------- 41 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE----------------------------------------- 41 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------------------------------
Confidence 357899999999999999999999999999999998742
Q ss_pred eccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 345 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~s 345 (645)
..+.+..+.+|.+.|++++|+++ + +|++|+.|++|++||+++++ .+..+ .|...|.+++|+| + +.+|++
T Consensus 42 --~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s 118 (297)
T 2pm7_B 42 --THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV 118 (297)
T ss_dssp --CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred --CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence 13456788999999999999863 4 89999999999999998874 34444 4889999999999 5 789999
Q ss_pred EeCCCcEEEEeCCCCc---EEEeeccCCCeEEEEEccC-------------CCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 346 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~-------------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
++.|+.|++||++++. ...+..|...|.+++|+|+ +++|++|+.|+.|++||++.........
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~- 197 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE- 197 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-
T ss_pred EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-
Confidence 9999999999998753 3456789999999999997 5799999999999999998765322111
Q ss_pred eccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 410 FHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
.....|...|.+++|+|++ ..+|++++.|++|++||..... ..+....+...|.+++|+|++++||+++.|
T Consensus 198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 1122356899999999984 4799999999999999976421 122224567899999999999999999999
Q ss_pred ccEEEEeCCC
Q 006424 483 CRVYVWNYDE 492 (645)
Q Consensus 483 g~I~iwd~~~ 492 (645)
|.|++|+...
T Consensus 276 ~~v~lw~~~~ 285 (297)
T 2pm7_B 276 NKVTLWKENL 285 (297)
T ss_dssp SCEEEEEECT
T ss_pred CcEEEEEECC
Confidence 9999999763
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-35 Score=304.76 Aligned_cols=296 Identities=18% Similarity=0.301 Sum_probs=232.6
Q ss_pred hhhhhhcccccceEEee-----ec-cccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCC
Q 006424 95 MVDELEQDQMNECVVTL-----EG-ESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSE 168 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (645)
+...|.+|...|..++| ++ ++.. +++.+. |+.++.|- + ..... .
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~-l~sgs~------------D~~v~iWd----------~----~~~~~-~-- 62 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPV-LISGSR------------DKTVMIWK----------L----YEEEQ-N-- 62 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCE-EEEEET------------TSCEEEEE----------E----CSSCC-S--
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCE-EEEEcC------------CCEEEEEE----------C----CcCCc-c--
Confidence 45688999999999998 55 4444 777777 77776661 0 00000 0
Q ss_pred CCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC
Q 006424 169 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 248 (645)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 248 (645)
. ........+.+|.+.|++++|+|++.+|++|+.||+|++||+.+
T Consensus 63 -----------------~-~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~----------------- 107 (343)
T 2xzm_R 63 -----------------G-YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT----------------- 107 (343)
T ss_dssp -----------------S-BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------
T ss_pred -----------------c-ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------
Confidence 0 00113456889999999999999999999999999999999987
Q ss_pred CCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---
Q 006424 249 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--- 324 (645)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--- 324 (645)
++.+..+.+|...|.+++|+|++ +|++++.|++|++||+.........
T Consensus 108 ----------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 159 (343)
T 2xzm_R 108 ----------------------------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159 (343)
T ss_dssp ----------------------------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred ----------------------------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence 44567888999999999999987 8999999999999999854443333
Q ss_pred cCCCcEEEEEEeeCCC----------CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEE
Q 006424 325 DHHNYVTCVQFNPIDD----------NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 394 (645)
Q Consensus 325 ~~~~~v~~l~~~p~~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~ 394 (645)
.|...|.+++|+| ++ .++++++.|+.|++||........+..|...|.+++|+|+|++|++|+.||.|+
T Consensus 160 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 160 NHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp SCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence 4888999999999 55 789999999999999976655666788999999999999999999999999999
Q ss_pred EEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--e--eEee---------cCCC
Q 006424 395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKS 461 (645)
Q Consensus 395 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~--~~~~---------~~~~ 461 (645)
+||+........... +...|.+++|+|++ .+++ ++.|+.|++||+.... . .+.. ..|.
T Consensus 239 iwd~~~~~~~~~~~~-------~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 239 IWDILNLTYPQREFD-------AGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp EEESSCCSSCSEEEE-------CSSCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred EEECCCCcccceeec-------CCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 999954443322221 12569999999997 5655 5568889999976322 1 2221 1467
Q ss_pred CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
..+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 78999999999999999999999999998754
No 39
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=299.62 Aligned_cols=247 Identities=18% Similarity=0.267 Sum_probs=202.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|...|++++|+|++ .|++|+.||+|+|||+.+++...
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------------------------------------- 117 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------------------------------------- 117 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence 477889999999985 78899999999999998743211
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
.....+.+|.+.|++++|+|++ +|++|+.|++|++||+++++++..+. |...|++++|+|.+..+|++++.|++|++|
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 1123455899999999999997 89999999999999999999998885 999999999999444689999999999999
Q ss_pred eCCCCcEEEe---eccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 356 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 356 d~~~~~~~~~---~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
|+++++.... ..+...+.+++|+|+ ++++++|+.||.|++||+++.+.... + . .|...|++++|+|++.
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-~--~----~h~~~v~~v~fsp~g~ 270 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-S--A----VHSQCVTGLVFSPHSV 270 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-E--E----CCSSCEEEEEECSSSS
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-E--c----CCCCCEEEEEEccCCC
Confidence 9998876653 345567999999995 56889999999999999987765322 2 2 2457899999999986
Q ss_pred cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+|++++.|++|+|||..... .+....|.+.|++++|+|+++ +|++||.||+|++|++.+..
T Consensus 271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999987543 344556899999999999986 57799999999999998763
No 40
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-35 Score=298.84 Aligned_cols=289 Identities=18% Similarity=0.227 Sum_probs=234.2
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
+..+|.+|...|..++|+|++.. +++.+. |+.++.|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~-l~s~~~------------dg~v~lW------------------------------- 40 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPW-VLTTLY------------SGRVELW------------------------------- 40 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSE-EEEEET------------TSEEEEE-------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCE-EEEEcC------------CCcEEEE-------------------------------
Confidence 44578899999999999999887 777766 5555555
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (645)
. .......+.+.+|..+|.+++|+|++++|++|+.|++|++||+.+
T Consensus 41 ----d-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~----------------------- 86 (304)
T 2ynn_A 41 ----N-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT----------------------- 86 (304)
T ss_dssp ----E-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----------------------
T ss_pred ----E-------CCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-----------------------
Confidence 0 000113455778999999999999999999999999999999987
Q ss_pred EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEE
Q 006424 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVT 331 (645)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~ 331 (645)
++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+ +|...|.
T Consensus 87 ----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 87 ----------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp ----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred ----------------------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 45567888999999999999987 8999999999999999877 444455 5899999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE--EeeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
+++|+|.++.+|++|+.|++|++||++.+... ....+...+..+.|+| ++.+|++|+.||.|++||+++......
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~- 223 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT- 223 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-
Confidence 99999966789999999999999999875532 2345667899999987 778999999999999999987764322
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--EEEEEeCCccE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRV 485 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I 485 (645)
+. .|...|.+++|+|++ .+|++++.||.|++||..+.........+...+.+++|+|++. ++++|++|| +
T Consensus 224 --~~----~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~ 295 (304)
T 2ynn_A 224 --LE----GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-F 295 (304)
T ss_dssp --EE----CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-E
T ss_pred --eC----CCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-e
Confidence 22 245789999999997 7999999999999999886554444455788999999999875 577777555 7
Q ss_pred EEEeCCC
Q 006424 486 YVWNYDE 492 (645)
Q Consensus 486 ~iwd~~~ 492 (645)
.+|++.+
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777754
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-35 Score=303.42 Aligned_cols=319 Identities=15% Similarity=0.145 Sum_probs=241.9
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|.++|.+++|+|||++++++..++.+.+|.... ..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 42 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---------------------------------------------HA 42 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS---------------------------------------------EE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC---------------------------------------------cc
Confidence 567899999999999999888777665554332 11
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE---EEe---cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL---NVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~---~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
......+|...|++++|+|++ ++++++ ||.|++||+.++... ..+ .|...|.+++|+| +++++++++.|+.
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSE
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence 122334799999999999998 777777 999999999876432 222 5888999999999 9999999999999
Q ss_pred EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
|++||+.+++ ...+..+...+.+++|+|+++++++++.||.|++||+++..... .+ . .|...+.+++|+|
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~--~----~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QF--Q----GHTDGASCIDISN 193 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EE--C----CCSSCEEEEEECT
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-ee--e----cccCceEEEEECC
Confidence 9999999876 33467788899999999999999999999999999998765432 22 1 2357899999999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 508 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 508 (645)
++ .++++++.|+.|++||++........ .+...+.+++|+|++++|++++.||.|++||+.++.. ..
T Consensus 194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~ 260 (337)
T 1gxr_A 194 DG-TKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQ 260 (337)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EE
T ss_pred CC-CEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EE
Confidence 97 89999999999999998865443333 3678899999999999999999999999999986521 00
Q ss_pred eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424 509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 588 (645)
Q Consensus 509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~ 588 (645)
...+.+.+ .+++|+||++++++++. ++.|++||+.+
T Consensus 261 ~~~~~~~v-------------------------------------------~~~~~~~~~~~l~~~~~-dg~i~~~~~~~ 296 (337)
T 1gxr_A 261 LHLHESCV-------------------------------------------LSLKFAYCGKWFVSTGK-DNLLNAWRTPY 296 (337)
T ss_dssp ECCCSSCE-------------------------------------------EEEEECTTSSEEEEEET-TSEEEEEETTT
T ss_pred EcCCccce-------------------------------------------eEEEECCCCCEEEEecC-CCcEEEEECCC
Confidence 11122333 44455555555555555 78899999887
Q ss_pred CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
++ ......+........+++ |+.+|++++.||+|++|++.
T Consensus 297 ~~----------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 297 GA----------SIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CC----------EEEEEECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred Ce----------EEEEecCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 73 111111222222234555 79999999999999999963
No 42
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=320.71 Aligned_cols=205 Identities=12% Similarity=0.116 Sum_probs=165.2
Q ss_pred eeeccCccCeEEEEEcCC-------CeEEEEeCCCcEEEEecCCCeEE-----------EEe-cCCCcEEEEEEeeCCCC
Q 006424 281 QELHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVGCNQCL-----------NVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~-------~~l~s~s~dg~I~iwd~~~~~~~-----------~~~-~~~~~v~~l~~~p~~~~ 341 (645)
..+.+|.+.|.+++|+|+ ++|++++.||+|++||+..+... ..+ .|...|++++|+| + .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence 345678899999999985 38999999999999999766421 233 4888999999997 4 5
Q ss_pred EEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEE--EEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 342 YFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l--~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
.|++|+.||+|++||++++. ...+..|...|+++ .|+|+| .+|++|+.||+|++||+++........ .+.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~---- 353 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRF---- 353 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EEC----
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-ccc----
Confidence 89999999999999998753 23467899999999 578888 899999999999999998765432211 111
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
....|.+++|+|++ ..+++++.|++|++||++..........|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 01347899999997 78999999999999998854432223348899999999999999999999999999998653
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-35 Score=316.46 Aligned_cols=393 Identities=17% Similarity=0.257 Sum_probs=279.4
Q ss_pred cccccccCCCCcccccChHhHHHHHHHHHHh-hcccchhhccccCCCCCC--------------CCccchhHh---hhcc
Q 006424 120 QSVDKFENPFPECKGVNIKKVKKLWKRIISM-KKRNVETCMSEKRKPNSE--------------KPKANKMEV---KQNK 181 (645)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~---~~~~ 181 (645)
+.+.+|+.||+..++.....+.+-|+++... ...+-..+..+....... .......+. ....
T Consensus 21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (464)
T 3v7d_B 21 EISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIF 100 (464)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHHHhhh
Confidence 3456788888888888788888888887665 333333333222111100 000000000 0000
Q ss_pred cccccc--cccccccccccccCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecc
Q 006424 182 KKCMEF--TALYTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 258 (645)
Q Consensus 182 ~~~~~~--~~~~~~~~l~~H~~~V-~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (645)
....+. .......++.+|.+.| .++.| ++++|++|+.||+|++||+.+
T Consensus 101 ~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--------------------------- 151 (464)
T 3v7d_B 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--------------------------- 151 (464)
T ss_dssp HHHHHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---------------------------
T ss_pred hHhhhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC---------------------------
Confidence 011111 1223456789999885 66666 567999999999999999987
Q ss_pred cCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEee
Q 006424 259 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP 337 (645)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p 337 (645)
++.+..+.+|.+.|.+++|++++.+++|+.||+|++||+++++.+..+. |...|.+++|++
T Consensus 152 ------------------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 213 (464)
T 3v7d_B 152 ------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213 (464)
T ss_dssp ------------------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEE
T ss_pred ------------------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEec
Confidence 4456778899999999999998899999999999999999999988886 899999999995
Q ss_pred -CCCCEEEEEeCCCcEEEEeCCCCc------------------------EEEeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424 338 -IDDNYFISGSIDGKVRIWGVCEKR------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGT 392 (645)
Q Consensus 338 -~~~~~l~s~s~dg~i~vwd~~~~~------------------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~ 392 (645)
.+++++++|+.|+.|++||++++. .....+|...+.++ +++++++++|+.||.
T Consensus 214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT 291 (464)
T ss_dssp SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence 266899999999999999998764 23456677777776 678999999999999
Q ss_pred EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 472 (645)
Q Consensus 393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~ 472 (645)
|++||+++...... +. .|...|.+++|+|++ .++++++.||.|++||+.+.........|...|.+++|+
T Consensus 292 i~vwd~~~~~~~~~---~~----~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 292 LIVWDVAQMKCLYI---LS----GHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp EEEEETTTTEEEEE---EC----CCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--
T ss_pred EEEEECCCCcEEEE---ec----CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--
Confidence 99999987654322 22 245789999999997 899999999999999988666555566689999999997
Q ss_pred CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCcc
Q 006424 473 GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI 552 (645)
Q Consensus 473 ~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~ 552 (645)
+++|++++.||.|++||+.++.. ...+++...
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~------------------------------------- 393 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNL------------------------------------- 393 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTC-------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCC-------------------------------------
Confidence 68999999999999999986521 011111111
Q ss_pred CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCe
Q 006424 553 RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGM 632 (645)
Q Consensus 553 ~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~ 632 (645)
+...+|+++++++++++ ++.|++||+.+++ ........+...+..+...++.++++++.||.
T Consensus 394 ------~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 394 ------SAITTFYVSDNILVSGS--ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 455 (464)
T ss_dssp ------CCEEEEEECSSEEEEEE--TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEETTEEEEEEEETTE
T ss_pred ------ccEEEEEeCCCEEEEec--CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecCCEEEEEEEeCCe
Confidence 22335666777666665 6789999998883 11111222333333333335667788888887
Q ss_pred EeEEE
Q 006424 633 IKTFH 637 (645)
Q Consensus 633 Iriw~ 637 (645)
+.+|-
T Consensus 456 ~~i~~ 460 (464)
T 3v7d_B 456 SFLEI 460 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76664
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-35 Score=300.53 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=200.8
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
..+|.+.|++++|+|+++ +++++.||+|+|||+.++...
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~---------------------------------------- 128 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL---------------------------------------- 128 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC------------------------------------------------
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee----------------------------------------
Confidence 457999999999999986 556788999999999874321
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
........+|...|++++|+|++ +|++|+.|++|++||+++++++..+. |...|++++|+|....++++++.|+.|+
T Consensus 129 -~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 129 -LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred -EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 11123455899999999999997 89999999999999999999998885 8999999999994445899999999999
Q ss_pred EEeCCCCcEEE---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 354 IWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 354 vwd~~~~~~~~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
+||+++++... ...+...+.+++|+|+ +.+|++|+.|+.|++||+++...... + . .|...|++++|+|+
T Consensus 208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~--~----~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S--A----VHSQNITGLAYSYH 280 (357)
T ss_dssp ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-E--C----CCSSCEEEEEECSS
T ss_pred EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-E--e----ccceeEEEEEEcCC
Confidence 99999877554 3456778999999997 46889999999999999987764322 2 2 23578999999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+..+|++++.|++|+|||+.... .+....|...|++++|+| ++++|++|+.||+|++|++...
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 86789999999999999987543 334446899999999998 7999999999999999999764
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-35 Score=294.91 Aligned_cols=292 Identities=23% Similarity=0.314 Sum_probs=236.1
Q ss_pred chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424 94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN 173 (645)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (645)
.+...|.+|...|..++|+|++.. +++.+. |+.++.|-
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~-l~s~~~------------dg~i~iw~----------------------------- 51 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEW-LASSSA------------DKLIKIWG----------------------------- 51 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSE-EEEEET------------TSCEEEEE-----------------------------
T ss_pred eeEEEEcccCCcEEEEEECCCCCE-EEEeeC------------CCeEEEEe-----------------------------
Confidence 345578899999999999999876 666666 55444440
Q ss_pred hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424 174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253 (645)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (645)
.......+.+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 52 -------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------------------- 96 (312)
T 4ery_A 52 -------------AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---------------------- 96 (312)
T ss_dssp -------------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred -------------CCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------
Confidence 000012345778999999999999999999999999999999987
Q ss_pred EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEE
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT 331 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~ 331 (645)
.+.+..+.+|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+. |...|.
T Consensus 97 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 97 -----------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp -----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred -----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence 44567788999999999999987 89999999999999999999888875 888999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
+++|+| ++++|++++.|+.|++||+++++.... ..+...+..++|+|+++++++++.||.|++||+++......
T Consensus 154 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--- 229 (312)
T 4ery_A 154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--- 229 (312)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---
Confidence 999999 999999999999999999998876653 34567899999999999999999999999999987764322
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEE
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYV 487 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~i 487 (645)
+..+.. ........+++.+..++++++.||.|++||+...........|...|.+++|+|++++|++++ .|++|++
T Consensus 230 ~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 230 YTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp ECSSCC--SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred EEecCC--ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 222111 111222344433338999999999999999886555555556889999999999999999997 6999999
Q ss_pred EeCC
Q 006424 488 WNYD 491 (645)
Q Consensus 488 wd~~ 491 (645)
|+.+
T Consensus 308 W~~d 311 (312)
T 4ery_A 308 WKSD 311 (312)
T ss_dssp EECC
T ss_pred ecCC
Confidence 9965
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=299.53 Aligned_cols=302 Identities=22% Similarity=0.313 Sum_probs=220.4
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
++.+|.+|...|+.+.|+++ . +++.+. |+.++.|- + .
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~-las~~~------------D~~i~lw~----------~----~-------------- 42 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--I-LATGST------------DRKIKLVS----------V----K-------------- 42 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--E-EEEEES------------SSCEEEEE----------C----S--------------
T ss_pred cceeeccCCCceeeeccCCC--E-EEEEcC------------CCEEEEEE----------e----c--------------
Confidence 45678899999999999987 3 777766 55555540 0 0
Q ss_pred hHhhhccccccccccccccccc-c-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc
Q 006424 175 MEVKQNKKKCMEFTALYTSQEI-Q-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 252 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l-~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (645)
.. .......+ . +|.+.|++++|+|++++|++|+.|++|++||+......
T Consensus 43 -------~~-----~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~----------------- 93 (330)
T 2hes_X 43 -------YD-----DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR----------------- 93 (330)
T ss_dssp -------SS-----CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----------------------
T ss_pred -------CC-----CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-----------------
Confidence 00 00012223 2 49999999999999999999999999999998642100
Q ss_pred eEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC----CeEEEEe-cC
Q 006424 253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DH 326 (645)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~----~~~~~~~-~~ 326 (645)
......+..+.+|...|.+++|+|++ +|++|+.|++|++||+.. .+++..+ .|
T Consensus 94 ---------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 94 ---------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp ----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred ---------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 00123456788999999999999997 899999999999999943 2455555 48
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC--c-EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCC
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN 401 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~--~-~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~ 401 (645)
...|.+++|+| ++++|++|+.|++|++||..++ + ...+.+|...|.+++|+|+ +..|++|+.|++|++||+...
T Consensus 153 ~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 SQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 89999999999 9999999999999999998765 2 3456789999999999998 778999999999999999754
Q ss_pred ceee-eEEee-ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeE-eecCCCC-CeEEEEEec--CC
Q 006424 402 DLKL-EKVDF-HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TG 473 (645)
Q Consensus 402 ~~~~-~~~~~-~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~i~~v~~sp--~~ 473 (645)
.... ..... ......|...|.+++|++++ +|++++.||.|++||..... ... ....|.. .|.+++|+| ++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~ 309 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK 309 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc
Confidence 2110 00001 11111256889999999774 89999999999999976432 111 1234665 899999999 78
Q ss_pred CEEEEEeCCccEEEEeCCC
Q 006424 474 KHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~ 492 (645)
++|++|+.||+|++||++.
T Consensus 310 ~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 310 TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CCEEEEETTSEEEEEEC--
T ss_pred eEEEEecCCCcEEEEEecc
Confidence 9999999999999999865
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-34 Score=300.56 Aligned_cols=250 Identities=24% Similarity=0.433 Sum_probs=209.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.+...|++++|+|+|++|++|+.||.|++||+.+ .
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------------------------------~ 155 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------------------------------R 155 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------T
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCC---------------------------------------------C
Confidence 3556799999999999999999999999999986 3
Q ss_pred CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...+.+++|+|.+++++++|+.|+.|++||
T Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235 (393)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 4467788999999999999987 899999999999999999999988888889999999997889999999999999999
Q ss_pred CCCCcEEEe--------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-----EeeccccccCCCCeEE
Q 006424 357 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG 423 (645)
Q Consensus 357 ~~~~~~~~~--------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~i~~ 423 (645)
++++..... .+|...|.+++|+|+|++|++|+.||.|++||++........ .........|...|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 998876543 468889999999999999999999999999999764321110 0000111234678999
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec------CCCEEEEEeCCccEEEEeCCCC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp------~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++|+|++ .+|++++.|+.|++||............|...|.+++|++ ++++|++|+.||+|+||++...
T Consensus 316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999997 7999999999999999876554444555889999999986 6889999999999999998643
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=296.08 Aligned_cols=239 Identities=21% Similarity=0.336 Sum_probs=205.8
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
....|.+|.+.|++++|+|++++|++|+.||.|++||+.+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------------------------------------- 63 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN---------------------------------------- 63 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------------------
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------------------
Confidence 3455889999999999999999999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID- 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d- 349 (645)
++.+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+.+...+.+++|+| +++++++++.+
T Consensus 64 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~ 137 (369)
T 3zwl_B 64 -----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV 137 (369)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred -----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence 45567888999999999999987 89999999999999999999999999999999999999 99999999998
Q ss_pred ----CcEEEEeCCCCc------------EEEeeccCC--CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424 350 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 350 ----g~i~vwd~~~~~------------~~~~~~~~~--~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
+.|++||+.... ......+.. .+.+++|+|+++++++++.||.|++||++........+..
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 216 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL- 216 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-
T ss_pred cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-
Confidence 999999987542 223344444 8999999999999999999999999999874443333332
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
|...|.+++|+|++ .+|++++.|+.|++||+.......... +...+..++|+|+++++++++.++.
T Consensus 217 -----~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 217 -----HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp -----CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-
T ss_pred -----CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCC
Confidence 24789999999997 899999999999999988544333333 6788999999999999999999983
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-35 Score=310.40 Aligned_cols=245 Identities=13% Similarity=0.123 Sum_probs=198.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..+++++|+|+|++|++|+.||.|++||+.+. ...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~---------------------------------------------~~~ 91 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR---------------------------------------------DGS 91 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE---------------------------------------------ETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc---------------------------------------------cee
Confidence 34568999999999999999999999998762 222
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
..+.+| ..+....|++++ +|++|+.||.|++||+.+++....+ .|...|++++|+| ++++|++|+.|+.|++||++
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 333444 344455678887 8999999999999999999998887 6999999999999 99999999999999999998
Q ss_pred CCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc------------------ccCCC
Q 006424 359 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------------------KTSGN 419 (645)
Q Consensus 359 ~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~~ 419 (645)
+++.. .+..|...|.+++|+|++++|++++.||.|++||+++...... +..+... ..+..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence 87654 4678999999999999999999999999999999987754332 2111100 01124
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+.+++|+|++ .++++++.||.|++||++........ ..|...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus 249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 45556668887 89999999999999998865444443 34778999999999999 99999999999999998763
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-34 Score=298.14 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=207.0
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+..|.++|++++|+|++++|++|+.||.|++||+.++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------------------------------------ 41 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------------------------------------ 41 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------------------------------------------
Confidence 45699999999999999999999999999999997621
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
...+..+.+|...|.+++|+|++ +|++++.||.|++||+++++.... ..|...|.+++|+| ++++|++++.|+.
T Consensus 42 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 42 -WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV 119 (372)
T ss_dssp -EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred -EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence 11467788999999999999987 899999999999999998875544 35888999999999 9999999999999
Q ss_pred EEEEeCCCCc----EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee-----------eEEeeccccc
Q 006424 352 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRKK 415 (645)
Q Consensus 352 i~vwd~~~~~----~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~ 415 (645)
|++||++.+. ... ...|...|.+++|+|+++++++++.||.|++||++...... ..........
T Consensus 120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 9999998865 222 35678899999999999999999999999999975221000 0000001111
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.|...+.+++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++| .|+.|++|++.+
T Consensus 200 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 200 SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 345789999999997 799999999999999987554444444578899999999999988888 899999999987
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-34 Score=322.93 Aligned_cols=312 Identities=16% Similarity=0.242 Sum_probs=239.5
Q ss_pred cccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 190 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 190 ~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
+.....|++|.+.|++++|+|++ ++|+||+.||+|++|++.+....
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------------------------- 418 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------------------------- 418 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence 33445689999999999999875 79999999999999998762110
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.......+.+|...|.+++|+|++ +|++|+.||+|++||+.+++.+..+ .|...|.+++|+| ++++|++|
T Consensus 419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 490 (694)
T 3dm0_A 419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA 490 (694)
T ss_dssp -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence 012346788999999999999997 8999999999999999999988877 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEEe----eccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~----~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.|++|++||......... .+|...|.+++|+|++ ..+++|+.||.|++||+++...... + ..|...
T Consensus 491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~---~----~~h~~~ 563 (694)
T 3dm0_A 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST---L----AGHTGY 563 (694)
T ss_dssp ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE---E----CCCSSC
T ss_pred eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE---E----cCCCCC
Confidence 9999999999877655443 3578889999999987 5899999999999999987664322 2 234588
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
|++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|++||+.++......
T Consensus 564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~- 639 (694)
T 3dm0_A 564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL- 639 (694)
T ss_dssp EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE-
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh-
Confidence 9999999998 899999999999999998665544433 567899999999999888876 556999999876321110
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 580 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~ 580 (645)
..+...........+ ......+..++++++|||||+++++++. |+.
T Consensus 640 ----------~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~-Dg~ 685 (694)
T 3dm0_A 640 ----------KVDLKAEAEKADNSG-----------------------PAATKRKVIYCTSLNWSADGSTLFSGYT-DGV 685 (694)
T ss_dssp ----------CCCCC---------------------------------------CCCCEEEEEECTTSSEEEEEET-TSE
T ss_pred ----------ccccccccccccccc-----------------------cccCCceeEEeeeEEEcCCCCEEEEEcC-CCe
Confidence 000000000000000 0000112224677899999999999998 999
Q ss_pred CCCCCCc
Q 006424 581 LPLWDVT 587 (645)
Q Consensus 581 i~iWd~~ 587 (645)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999975
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=302.16 Aligned_cols=255 Identities=20% Similarity=0.295 Sum_probs=213.8
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
+.+.+.+|.+.|++++|+|++++||+|+.||.|++||+....
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------------- 44 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------------------- 44 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence 356788999999999999999999999999999999997421
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEE
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF 343 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l 343 (645)
...+..+.+|...|++++|+++ + +|++|+.||.|++||+.+++ .+..+ .|...|.+++|+| + ++++
T Consensus 45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l 118 (379)
T 3jrp_A 45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL 118 (379)
T ss_dssp -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence 3345678899999999999865 4 89999999999999999986 44444 4889999999999 7 8999
Q ss_pred EEEeCCCcEEEEeCCCC---cEEEeeccCCCeEEEEEcc-------------CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 344 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp-------------~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
++++.|+.|++||++.+ ....+..|...|.+++|+| ++.++++++.||.|++||++........
T Consensus 119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 99999999999999876 3445678899999999999 6999999999999999999876543221
Q ss_pred EeeccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEEEEECCcc-----eeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
.. ....|...|.+++|+|++ ..+|++++.||.|++||+... ........+...|.+++|+|++++|++++
T Consensus 199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 11 122346889999999993 389999999999999998753 23333344788999999999999999999
Q ss_pred CCccEEEEeCCCC
Q 006424 481 DDCRVYVWNYDEL 493 (645)
Q Consensus 481 ~dg~I~iwd~~~~ 493 (645)
.||.|++|++...
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 9999999999854
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-35 Score=309.41 Aligned_cols=335 Identities=11% Similarity=0.115 Sum_probs=223.7
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
++.|.++|++++|+|+|++|++|+.||.|++||+.++.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------------------------------------ 44 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------------------------------------ 44 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------------------------------------
Confidence 44577899999999999999999999999999998621
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe---EEE-EecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLN-VFDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~---~~~-~~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ ... ...|...|.+++|+| ++++|++++.|+
T Consensus 45 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 122 (377)
T 3dwl_C 45 -WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR 122 (377)
T ss_dssp -EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred -eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence 03456778899999999999987 89999999999999999877 333 346999999999999 999999999999
Q ss_pred cEEEEeCCCCc----EEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee-----------eEEeecccc
Q 006424 351 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRK 414 (645)
Q Consensus 351 ~i~vwd~~~~~----~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~ 414 (645)
.|++||+++++ ...+.. |...|.+++|+|++++|++++.||.|++||+....... .........
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 99999999876 445556 89999999999999999999999999999996432111 001111111
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee----eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
.|...|.+++|+|++ .+|++++.|+.|++||+..... ......|...|.+++|+|++++|++|+.|+.+ +|+.
T Consensus 203 -~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 203 -PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp -CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred -cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 467889999999998 7999999999999999875433 33334488899999999999999999866665 7766
Q ss_pred CCCCcCCCcccCCcceeeee-------ecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcc
Q 006424 491 DELCFPSSKQKNSVRSCEHF-------FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW 563 (645)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 563 (645)
.................... .......++.|+.....+......+... ........|...++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 280 NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ--------SISSLPTVHQNMIATLR 351 (377)
T ss_dssp CC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEE
T ss_pred CCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc--------cccccCccccceeEEEe
Confidence 54321111110000000000 0001122333333322222111111000 11122345777788888
Q ss_pred ccCCCC----CCcCCCCCCCcCCCCCC
Q 006424 564 FSNDGP----CRGSATWPAEKLPLWDV 586 (645)
Q Consensus 564 fs~dg~----~l~s~s~~d~~i~iWd~ 586 (645)
+.++.. .++|++. ||+|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~-Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGT-DGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEET-TSEEEEECC
T ss_pred ccCCCCCceEEEEeecC-CCcEEEecC
Confidence 666543 4888888 999999985
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-33 Score=296.04 Aligned_cols=254 Identities=14% Similarity=0.195 Sum_probs=207.7
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+.+.+|.+.|++++|+| ++|++|+.||.|++||+.+.....
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~----------------------------------- 50 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------------------------- 50 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-----------------------------------
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc-----------------------------------
Confidence 4567889999999999999 799999999999999998732100
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCC----C----eEEEEeCCCcEEEEecCCCeE-----EEEec-C-----CCcEEE
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVTC 332 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~----~----~l~s~s~dg~I~iwd~~~~~~-----~~~~~-~-----~~~v~~ 332 (645)
....+..+.+|...|.+++|+|+ + +|++++.||.|++||+.+++. +..+. | ...|.+
T Consensus 51 ----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 51 ----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp ----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE
T ss_pred ----CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE
Confidence 01246777899999999999988 4 789999999999999988875 55554 5 489999
Q ss_pred EEEe----eCCCCE-EEEEeCCCcEEEEeCCC------CcEE------Ee-------eccCCCeEEEEEccCCCEEEEEe
Q 006424 333 VQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 333 l~~~----p~~~~~-l~s~s~dg~i~vwd~~~------~~~~------~~-------~~~~~~v~~l~~sp~g~~l~~g~ 388 (645)
++|+ | ++++ |++++.||.|++||+++ ++.. .+ ..|...+.+++|+|++ ++++++
T Consensus 127 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~ 204 (397)
T 1sq9_A 127 LKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF 204 (397)
T ss_dssp EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred EEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence 9999 9 8999 99999999999999987 4432 33 3478899999999999 999999
Q ss_pred cCCeEEEEEecCCceeeeEEeeccccccC---CCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecC---
Q 006424 389 ITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP--- 459 (645)
Q Consensus 389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~--- 459 (645)
.||.|++||+++..... .+.. ...| ...|.+++|+|++ .+|++++.| +.|++||+...........
T Consensus 205 ~dg~i~i~d~~~~~~~~-~~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLY-NFES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp TTSEEEEEETTTTEEEE-EEEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred CCCcEEEEECCCCceeE-EEec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999998765432 2222 0113 4789999999997 899999999 9999999886554444444
Q ss_pred ----------CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 460 ----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 460 ----------~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7889999999999999999999999999999876
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-35 Score=309.45 Aligned_cols=253 Identities=13% Similarity=0.168 Sum_probs=197.1
Q ss_pred cccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 192 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
..+...+|...|+||+|+| ++++||+|+.||.|+|||+.++.
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------------------------------- 153 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------------------------------- 153 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-------------------------------------
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-------------------------------------
Confidence 4455678999999999999 56799999999999999997632
Q ss_pred CceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s 345 (645)
......+.+|.+.|++++|+| ++ +|++|+.||+|++||++++....... +...+.+++|+| ++++|++
T Consensus 154 ------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 226 (435)
T 4e54_B 154 ------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVT 226 (435)
T ss_dssp ------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEE
T ss_pred ------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEE
Confidence 122345668999999999997 44 99999999999999998766544443 344688999999 9999999
Q ss_pred EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
|+.||.|++||+++..+..+..|...|++++|+|++. ++++|+.|+.|++||++......... ....|...|+++
T Consensus 227 g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~----~~~~h~~~v~~~ 302 (435)
T 4e54_B 227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL----YSLPHRHPVNAA 302 (435)
T ss_dssp ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS----BCCBCSSCEEEC
T ss_pred EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE----Eeeeccccccce
Confidence 9999999999999888778889999999999999886 78889999999999998765432211 122356889999
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC------CCeEEEEEecCCCEEEEEeC------------CccEE
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIGD------------DCRVY 486 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~i~~v~~sp~~~~l~t~s~------------dg~I~ 486 (645)
+|+|+| .+|++++.|+.|++||+...........|. ..+....|+|++.++++++. ++.|+
T Consensus 303 ~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 303 CFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp CBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred eECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 999998 899999999999999987543322221121 12345567777777766642 34577
Q ss_pred EEeCCCC
Q 006424 487 VWNYDEL 493 (645)
Q Consensus 487 iwd~~~~ 493 (645)
+||..++
T Consensus 382 iwd~~~g 388 (435)
T 4e54_B 382 VFDGNSG 388 (435)
T ss_dssp EECSSSC
T ss_pred EEECCCC
Confidence 7776654
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-33 Score=300.25 Aligned_cols=327 Identities=17% Similarity=0.274 Sum_probs=247.2
Q ss_pred ccccccccccCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 191 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 191 ~~~~~l~~H~~~V-~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
...+.+.+|.+.| +|+. ++|++|++|+.||+|++||+.+
T Consensus 109 ~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~-------------------------------------- 148 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT-------------------------------------- 148 (445)
T ss_dssp CCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred ceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC--------------------------------------
Confidence 3556789999975 5544 4689999999999999999987
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~ 348 (645)
++.+..+.+|.+.|.+++|+ ++.+++|+.||+|++||+.+++.+..+. |...|.++.|+ ++.+++|+.
T Consensus 149 -------~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~ 217 (445)
T 2ovr_B 149 -------GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSR 217 (445)
T ss_dssp -------CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred -------CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeC
Confidence 44567788999999999998 4599999999999999999999988885 88999999995 578999999
Q ss_pred CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
||.|++||+++++... +..|...+.+++| +++++++|+.||.|++||+++...... + . .|...|.++.|
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~----~~~~~v~~~~~- 287 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-L--Q----GHTNRVYSLQF- 287 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE-E--C----CCSSCEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE-e--c----CCCCceEEEEE-
Confidence 9999999999877654 6678999999998 788999999999999999987654322 1 2 24578999999
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 507 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 507 (645)
++ .++++++.|+.|++||+.+.........|...+.++.+ +++++++|+.||.|++||+.+++........
T Consensus 288 -~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----- 358 (445)
T 2ovr_B 288 -DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP----- 358 (445)
T ss_dssp -CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-----
T ss_pred -CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-----
Confidence 54 78999999999999998865555555567888888877 4679999999999999999866211100000
Q ss_pred eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
..+.+.+.+++ | ++.++++++. |+.|++||+.
T Consensus 359 --~~~~~~v~~~~-------------------------------------------~--~~~~l~s~~~-dg~v~iwd~~ 390 (445)
T 2ovr_B 359 --NKHQSAVTCLQ-------------------------------------------F--NKNFVITSSD-DGTVKLWDLK 390 (445)
T ss_dssp --TSCSSCEEEEE-------------------------------------------E--CSSEEEEEET-TSEEEEEETT
T ss_pred --CCCCCCEEEEE-------------------------------------------E--CCCEEEEEeC-CCeEEEEECC
Confidence 00122333333 3 2345566665 8899999998
Q ss_pred cCCCCCcCChhhhHhhhhhccCCC--CCccCCCCcceEEEEecCCCe----EeEEEecCcc
Q 006424 588 IDSDGYCQDPQQQRLQQQCLNNVD--DVRAISATWGLVIVTAGCDGM----IKTFHNYGLP 642 (645)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~ivt~s~Dg~----Iriw~~~g~~ 642 (645)
+++.. . .........+.+ ..+++++ ++.++++|+.||+ |.+|++..-|
T Consensus 391 ~~~~~--~----~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 391 TGEFI--R----NLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp TCCEE--E----EEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred CCcee--e----eeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCCC
Confidence 87300 0 000000112222 2245555 7999999999998 9999988655
No 57
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.6e-33 Score=283.32 Aligned_cols=273 Identities=15% Similarity=0.233 Sum_probs=223.5
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|.+.|++++|+|++++|++++ ||.|++||+.++..
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------ 84 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------ 84 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence 37999999999999999999999 99999999986321
Q ss_pred CCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 277 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 277 ~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
......+. +|...|.+++|+|++ +|++++.|+.|++||+.+++ ....+ .|...|.+++|+| +++++++++.|+
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence 12233333 789999999999987 89999999999999999877 33334 4888999999999 999999999999
Q ss_pred cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.|++||+++++... +..|...+.+++|+|+++++++++.||.|++||+++...... .. +...+.+++|+|+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT 235 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence 99999999887665 566899999999999999999999999999999987764332 21 2367999999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 509 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 509 (645)
+ .++++++.|+.|++||...... .....|...|.+++|+|++++|++++.||.|++||+.+++.. ..
T Consensus 236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----------~~ 302 (337)
T 1gxr_A 236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----------FQ 302 (337)
T ss_dssp S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------EE
T ss_pred C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EE
Confidence 8 8999999999999999875433 344568899999999999999999999999999999876321 12
Q ss_pred eecCCcEEEEecCCCCccccccCCC
Q 006424 510 FFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 510 ~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
..+.+.+.+++|+|++..|++.+.+
T Consensus 303 ~~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 303 SKESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETT
T ss_pred ecCCCcEEEEEECCCCCEEEEecCC
Confidence 2344556677777777666655443
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-33 Score=287.86 Aligned_cols=296 Identities=20% Similarity=0.317 Sum_probs=236.1
Q ss_pred chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424 94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN 173 (645)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (645)
.|..+|+||...|+.++|+|+....+++++. |++++.|- + ...
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~------------D~~i~vWd----------~----~~~----------- 71 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASR------------DKTIIMWK----------L----TRD----------- 71 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEET------------TSCEEEEE----------E----CCS-----------
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcC------------CCeEEEEE----------C----CCC-----------
Confidence 4556899999999999999985444888888 88777770 0 000
Q ss_pred hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424 174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253 (645)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (645)
+.......+++++|.+.|++++|+|+|++|++|+.||.|++|+....
T Consensus 72 ------------~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--------------------- 118 (340)
T 4aow_A 72 ------------ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--------------------- 118 (340)
T ss_dssp ------------SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------------------
T ss_pred ------------CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---------------------
Confidence 00011134568899999999999999999999999999999998862
Q ss_pred EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcE
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYV 330 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v 330 (645)
........+...+..+.+++++ .|++++.|+.+++||+......... .|...+
T Consensus 119 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 119 ------------------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp ------------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred ------------------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 3344555677888899999876 8999999999999999876554433 488899
Q ss_pred EEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424 331 TCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 331 ~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
.+++|++.. ..++++++.|+.|++||+++++... +.+|...|++++|+|++++|++|+.||.|++||++.......
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-- 252 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT-- 252 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee--
Confidence 999998732 3478899999999999999987665 677899999999999999999999999999999987764322
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe---------ecCCCCCeEEEEEecCCCEEEEE
Q 006424 409 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK---------GLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~---------~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
+.. ...+.++.|+|++ .+++++.|+.|++||+........ ...|...|++++|+|++++|++|
T Consensus 253 -~~~-----~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 253 -LDG-----GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp -EEC-----SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred -ecC-----CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 222 2679999999986 566777899999999874332221 23478899999999999999999
Q ss_pred eCCccEEEEeCCCC
Q 006424 480 GDDCRVYVWNYDEL 493 (645)
Q Consensus 480 s~dg~I~iwd~~~~ 493 (645)
+.||.|+|||+.+|
T Consensus 325 s~Dg~v~iW~~~tG 338 (340)
T 4aow_A 325 YTDNLVRVWQVTIG 338 (340)
T ss_dssp ETTSCEEEEEEEC-
T ss_pred eCCCEEEEEeCCCc
Confidence 99999999999887
No 59
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-34 Score=291.02 Aligned_cols=248 Identities=20% Similarity=0.297 Sum_probs=198.3
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~---------------------------------------- 46 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG---------------------------------------- 46 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE----------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC----------------------------------------
Confidence 4567999999999999999999999999999999997631
Q ss_pred eccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 345 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~s 345 (645)
...+..+.+|.+.|++++|+++ + +|++|+.|++|++||+++++ ....+ .|...|.+++|+| + +.+|++
T Consensus 47 ---~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las 122 (316)
T 3bg1_A 47 ---QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC 122 (316)
T ss_dssp ---EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred ---cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence 1235678899999999999852 4 89999999999999998874 44444 4889999999999 5 789999
Q ss_pred EeCCCcEEEEeCCCCcE----EEeeccCCCeEEEEEccC-----------------CCEEEEEecCCeEEEEEecCCcee
Q 006424 346 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK 404 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~----~~~~~~~~~v~~l~~sp~-----------------g~~l~~g~~dg~i~iwd~~~~~~~ 404 (645)
|+.|++|++||++.+.. .....|...+.+++|+|+ +++|++|+.|+.|++||++.....
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 99999999999987632 224568889999999997 478999999999999999754321
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcc------eeeEeecCCCCCeEEEEEecCCCE
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~i~~v~~sp~~~~ 475 (645)
.... ....|...|.+++|+|++ ..+|++++.|++|++||+... ...+. .|...|.+++|+|++++
T Consensus 203 ~~~~----~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 203 KEEQ----KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANI 276 (316)
T ss_dssp EEEE----CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCC
T ss_pred ceee----ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCE
Confidence 1111 123456889999999985 268999999999999997641 12233 36789999999999999
Q ss_pred EEEEeCCccEEEEeCC
Q 006424 476 IISIGDDCRVYVWNYD 491 (645)
Q Consensus 476 l~t~s~dg~I~iwd~~ 491 (645)
|++++.||.|++|+..
T Consensus 277 las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEESSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEEC
Confidence 9999999999999975
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=293.64 Aligned_cols=350 Identities=15% Similarity=0.195 Sum_probs=227.1
Q ss_pred ccccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 191 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
.....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++..........
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------------- 86 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA--------------------------- 86 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------------------
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------------------
Confidence 34566788999999999999 99999999999999999998743221100000
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC--CCCEEEE
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFIS 345 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s 345 (645)
. .........+|...|.+++|+| ++ +|++++.||.|++||+.+++....+.+...+.++.|+|. ++.++++
T Consensus 87 --~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 87 --V---CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp --E---EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred --c---ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEE
Confidence 0 0000112246999999999999 55 899999999999999999999999999999999999983 2339999
Q ss_pred EeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEee---------cccc
Q 006424 346 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDRK 414 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~ 414 (645)
++.|+.|++||+++++.. .+..|...|.+++|+|+++ .+++|+.||.|++||++........+.. ....
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 999999999999987654 4667899999999999998 5889999999999999876543332211 1111
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec--C---CCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL--P---KSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~---~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
..|...|.+++|+|++ .+|++++.|+.|++||+.......... . ....+........+..+++++.|+.|++||
T Consensus 242 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred ccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 3466889999999997 899999999999999987543222111 0 111222222233456677778899999999
Q ss_pred CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCC
Q 006424 490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP 569 (645)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~ 569 (645)
+.++.... .+ ..+...+++++|+||++
T Consensus 321 ~~~~~~~~-----------~~------------------------------------------~~~~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 321 VYSGEQIT-----------ML------------------------------------------KGHYKTVDCCVFQSNFQ 347 (408)
T ss_dssp TTTCCEEE-----------EE------------------------------------------CCCSSCEEEEEEETTTT
T ss_pred CcCCccee-----------ee------------------------------------------ccCCCeEEEEEEcCCCC
Confidence 98762110 00 11223344556666666
Q ss_pred CCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 570 CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 570 ~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
++++++. |+.|++||+.+++.. . ..........+.+.+...+.+++.|+.|++|.+.
T Consensus 348 ~l~s~~~-dg~i~iw~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 348 ELYSGSR-DCNILAWVPSLYEPV-----------P-DDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEET-TSCEEEEEECC---------------------------------------------------
T ss_pred EEEEECC-CCeEEEEeCCCCCcc-----------C-CCCceEeccccccccceeecccCccCceeecCCc
Confidence 6666666 889999999887311 0 0111111123444456677889999999999864
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-34 Score=303.74 Aligned_cols=305 Identities=15% Similarity=0.202 Sum_probs=220.7
Q ss_pred CceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 279 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
......+|...|++|+|+|. + +|++|+.||+|+|||+.+++.... .+|...|++++|+|.++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34566789999999999985 3 899999999999999987654333 359999999999987789999999999999
Q ss_pred EEeCCCCcEEEeec---cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 354 IWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 354 vwd~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+||++++....+.. +...+.+++|+|++++|++|+.||.|++||+++.... ....|...|++++|+|++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTC
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCC
Confidence 99998876655433 3446789999999999999999999999999764321 122356889999999998
Q ss_pred CcEEEEEECCCeEEEEECCccee---eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424 431 SQRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 507 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 507 (645)
..++++++.|+.|++||++.... ......|...|.+++|+|+|++|++++.||.|+|||+.++............
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-- 340 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-- 340 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--
Confidence 77899999999999999874321 2223458889999999999999999999999999999876432211000000
Q ss_pred eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
...........|+|++..+ .+++++|+..++.....++.|++||..
T Consensus 341 --~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 341 --HFQHLTPIKAAWHPRYNLI--------------------------------VVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp --CCSSSCCCBCEECSSSSCE--------------------------------EEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred --ccccceeEEEEEcCCCCEE--------------------------------EEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 0000001122233333222 234566677666655546789999998
Q ss_pred cCCCCCcCChhhhHhhhhhccCCCCCc---cCCCCcceEEEEecCCCeEeEEEec
Q 006424 588 IDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
++. .......++...+. +|++ ||.+|++|+ |++|+||+..
T Consensus 387 ~g~----------~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 387 SGK----------MMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp SCC----------EEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred CCc----------EEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence 883 11222223333332 2444 799999876 8899999965
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-35 Score=308.56 Aligned_cols=336 Identities=8% Similarity=0.116 Sum_probs=255.3
Q ss_pred CccCeEEEEEcCCC--eEEEE----------eCCCcEEEEecCCCe---EEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 286 HKGDVLDLAWSNSN--YLLSC----------SMDKTVRMWQVGCNQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 286 h~~~V~~l~~s~~~--~l~s~----------s~dg~I~iwd~~~~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
+...|.+++|+|++ +|++| +.|+.|++||+.++. .+..+.|...|.+++|+| ++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCC
Confidence 34578899999986 78888 889999999998875 556667899999999999 999999999999
Q ss_pred cEEEEeCCC----C-cEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCc------eeeeEEeeccccccCC
Q 006424 351 KVRIWGVCE----K-RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGND------LKLEKVDFHDRKKTSG 418 (645)
Q Consensus 351 ~i~vwd~~~----~-~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~ 418 (645)
.|++||+.. . ....+..|...|++++|+|+ ++++++++.||.|++||+.... .... ......|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~ 165 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT----PGQSMSSV 165 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC----CCCSCCSS
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc----cccccCCC
Confidence 999999987 2 45567889999999999998 8999999999999999998775 2211 11223456
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCC------CCCeEEEEEecCC-CEEEEEeCCc---cEEEE
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTG-KHIISIGDDC---RVYVW 488 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------~~~i~~v~~sp~~-~~l~t~s~dg---~I~iw 488 (645)
..|.+++|+|++..++++++.|+.|++||++..........+ ...+.+++|+|++ .++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 889999999995589999999999999998865444444333 7889999999997 6999999999 99999
Q ss_pred eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC-CCccccccCCCCccccCccccccccCC--ccCCCCccccCcccc
Q 006424 489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG-IGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFS 565 (645)
Q Consensus 489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~-~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs 565 (645)
|+.++..+..... ..+.+.+..++|+| ++..|++.+.++. +.+|+...... .+..+...+.+++|+
T Consensus 246 d~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s~~~dg~---v~~wd~~~~~~~~~~~~~~~~v~~~~~s 314 (416)
T 2pm9_A 246 DLRNANTPLQTLN--------QGHQKGILSLDWCHQDEHLLLSSGRDNT---VLLWNPESAEQLSQFPARGNWCFKTKFA 314 (416)
T ss_dssp ETTSTTSCSBCCC--------SCCSSCEEEEEECSSCSSCEEEEESSSE---EEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred eCCCCCCCcEEee--------cCccCceeEEEeCCCCCCeEEEEeCCCC---EEEeeCCCCccceeecCCCCceEEEEEC
Confidence 9987632221110 02456788999999 8888888777643 56777644332 456778889999999
Q ss_pred CCC-CCCcCCCCCCCcCCCCCCccCCCCCcCCh-----hhhHhhhh---------------------hccCCCCCccCCC
Q 006424 566 NDG-PCRGSATWPAEKLPLWDVTIDSDGYCQDP-----QQQRLQQQ---------------------CLNNVDDVRAISA 618 (645)
Q Consensus 566 ~dg-~~l~s~s~~d~~i~iWd~~~~~~~~~~~~-----~~~~~~~~---------------------~~~~~~~~~~~~~ 618 (645)
|++ .++++++. |+.|++|++.+......... ..+..... .+.......+|++
T Consensus 315 ~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 393 (416)
T 2pm9_A 315 PEAPDLFACASF-DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF 393 (416)
T ss_dssp TTCTTEEEECCS-SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET
T ss_pred CCCCCEEEEEec-CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee
Confidence 999 78888888 99999999987742221100 00000000 0111112234445
Q ss_pred CcceEEEEecCCCeEeEEEec
Q 006424 619 TWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 619 ~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
||++|++|+.||+|+||++.
T Consensus 394 -dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 394 -GGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp -TTEEECBCTTSSCBCCBCCC
T ss_pred -CCeEEEEeCCCCeEEEEEec
Confidence 79999999999999999964
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=287.32 Aligned_cols=309 Identities=15% Similarity=0.234 Sum_probs=230.1
Q ss_pred cccccccccCcEEEEEECCCCC-EEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGR-YLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~-~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
..+.+++|.+.|++++|+|++. ++++|+. ||.|++||+.++...
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-------------------------------- 57 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-------------------------------- 57 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------------
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------------
Confidence 3445678999999999999996 5556665 999999999873211
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCC----CeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEEEE------
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQF------ 335 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l~~------ 335 (645)
.....+|...|.+++|+|+ .+|++|+.||.|++||+.+++ .+..+ .|...|.+++|
T Consensus 58 ------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 125 (357)
T 3i2n_A 58 ------------LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGI 125 (357)
T ss_dssp ------------EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGC
T ss_pred ------------ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccccc
Confidence 1223368999999999997 489999999999999999887 66666 48899999965
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccC----CCeEEEE----EccCCCEEEEEecCCeEEEEEecCCceee
Q 006424 336 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVR----DVISAIC----YIPDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 336 ~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~----~~v~~l~----~sp~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
+| ++++|++++.|+.|++||++++. ...+..+. ..+.+++ |+|+++++++++.||.|++||+++.....
T Consensus 126 s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 126 GE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp C--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence 57 88999999999999999998865 33444333 3788888 78899999999999999999999876522
Q ss_pred eEEeeccccccCCCCeEEEEEcC---CCCcEEEEEECCCeEEEEECCcce--eeE---eecCCCCCeEEEEEecCCC-EE
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSR---DESQRIMITSEDSKLRILDGVDVI--HKF---KGLPKSGSQMSASFTTTGK-HI 476 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~---~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~~~~~~~i~~v~~sp~~~-~l 476 (645)
. . .+...|.+++|+| ++ .++++++.||.|++||++... ..+ ....|...|.+++|+|+++ +|
T Consensus 205 ~----~----~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 275 (357)
T 3i2n_A 205 E----T----NIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELF 275 (357)
T ss_dssp E----E----ECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred e----c----CCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEE
Confidence 1 1 1247899999999 76 799999999999999976322 222 2225889999999999998 89
Q ss_pred EEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC
Q 006424 477 ISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE 556 (645)
Q Consensus 477 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 556 (645)
++++.||.|++||+..+...... .+++......+. .........+.
T Consensus 276 ~~~~~dg~i~iwd~~~~~~~~~~----------------------~~~g~~~~~~~~------------~~~~~~~~~~~ 321 (357)
T 3i2n_A 276 LTAGGAGGLHLWKYEYPIQRSKK----------------------DSEGIEMGVAGS------------VSLLQNVTLST 321 (357)
T ss_dssp EEEETTSEEEEEEEECCSCC--C----------------------CTTSCCCCCCCE------------EEEEEEEECCS
T ss_pred EEEeCCCcEEEeecCCCcccccc----------------------cCCCCccccccc------------cceeeccccCC
Confidence 99999999999999876422111 111111000000 00111133456
Q ss_pred ccccCccccCCCCCCc-CCCCCCCcCCCCCCccC
Q 006424 557 RFSLGSWFSNDGPCRG-SATWPAEKLPLWDVTID 589 (645)
Q Consensus 557 ~~~~~~~fs~dg~~l~-s~s~~d~~i~iWd~~~~ 589 (645)
..+++++|+|+|++++ +++. |+.|++||+.+.
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~-d~~i~iw~~~~~ 354 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSF-DQTVRVLIVTKL 354 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEET-TSEEEEEEECC-
T ss_pred CCeeEEEEcCCCCeEEEEecC-CCcEEEEECCCc
Confidence 6778888999999887 6777 899999998765
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.9e-33 Score=287.64 Aligned_cols=292 Identities=10% Similarity=0.162 Sum_probs=224.5
Q ss_pred ccccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
.....+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------------------- 106 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ----------------------------------- 106 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------------------------------
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------------------------------
Confidence 344566788999999999999999 89999999999999999863
Q ss_pred cCCCceeccCCCceee--ccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCC
Q 006424 268 IPDEVFQIEESPLQEL--HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD 340 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l--~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~ 340 (645)
.....+ .+|...|.+++|+| ++ +|++++.|+.|++||+.......... +...|.+++|+| ++
T Consensus 107 ----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 175 (383)
T 3ei3_B 107 ----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SR 175 (383)
T ss_dssp ----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TT
T ss_pred ----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CC
Confidence 222333 47999999999999 44 89999999999999999644433333 447899999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
++|++|+.|+.|++||++......+..|...|.+++|+|+++ ++++++.||.|++||++............. |..
T Consensus 176 ~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~ 251 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----HEK 251 (383)
T ss_dssp TEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSS
T ss_pred CEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----CCC
Confidence 999999999999999997777777888999999999999999 999999999999999987432211111111 357
Q ss_pred CeEEEEEcC-CCCcEEEEEECCCeEEEEECCc--ceeeEeecC-----CC----------CCeEEEEEecCCCEEEEEeC
Q 006424 420 KITGIQFSR-DESQRIMITSEDSKLRILDGVD--VIHKFKGLP-----KS----------GSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 420 ~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~-----~~----------~~i~~v~~sp~~~~l~t~s~ 481 (645)
.|.+++|+| ++ .+|++++.|+.|++||++. ....+..+. +. +.+..++|+|++++ +|+.
T Consensus 252 ~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 252 PVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp CEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred ceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 899999999 87 8999999999999999874 233333321 11 34455667777766 7789
Q ss_pred CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
||.|++||+.+++...... ...+.+.+..++|+|++..|++.+ | ..+.+|+.
T Consensus 329 d~~i~iwd~~~~~~~~~l~--------~~~~~~~~~~~~~s~~g~~l~s~s-d---~~i~iw~~ 380 (383)
T 3ei3_B 329 KRTIDIYDANSGGLVHQLR--------DPNAAGIISLNKFSPTGDVLASGM-G---FNILIWNR 380 (383)
T ss_dssp CCCEEEEETTTCCEEEEEC--------BTTBCSCCCEEEECTTSSEEEEEE-T---TEEEEEEC
T ss_pred CCeEEEEecCCCceeeeec--------CCCCCceEEEEEEecCccEEEEec-C---CcEEEEec
Confidence 9999999998774311110 011345566678999999888774 3 44667765
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-33 Score=313.75 Aligned_cols=292 Identities=19% Similarity=0.320 Sum_probs=231.0
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
+...|.+|.+.|..+++.+++...+++.+. |+.++.|- + .....
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~------------D~~i~~W~----------~----~~~~~---------- 417 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASR------------DKSIILWK----------L----TKDDK---------- 417 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEET------------TSEEEEEE----------C----CCSTT----------
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeC------------CCcEEEEE----------c----cCCCc----------
Confidence 345688999999999999886555788888 77777661 0 00000
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (645)
......+.+.+|.+.|++++|+|+|++|++|+.||+|++||+.+
T Consensus 418 -------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~----------------------- 461 (694)
T 3dm0_A 418 -------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----------------------- 461 (694)
T ss_dssp -------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred -------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-----------------------
Confidence 00012345789999999999999999999999999999999987
Q ss_pred EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe----cCCCc
Q 006424 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNY 329 (645)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~~ 329 (645)
+.....+.+|...|.+++|+|++ +|++|+.|++|++||.......... .|...
T Consensus 462 ----------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 462 ----------------------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp ----------------------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred ----------------------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 34467788999999999999987 8999999999999998765444332 37889
Q ss_pred EEEEEEeeCCC--CEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 330 VTCVQFNPIDD--NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 330 v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
|.+++|+| ++ ..+++++.|++|++||++++++.. +.+|...|++++|+|++++|++|+.||.|++||+.+......
T Consensus 520 v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 520 VSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp EEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred EEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 99999999 55 589999999999999999887654 678999999999999999999999999999999987764321
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec-------------------CCCCCeEEE
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSA 467 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~-------------------~~~~~i~~v 467 (645)
+. +...+.+++|+|++ .+++++ .++.|++||+.......... .+...++++
T Consensus 599 ---~~-----~~~~v~~~~~sp~~-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 599 ---LE-----ANSVIHALCFSPNR-YWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp ---CB-----CSSCEEEEEECSSS-SEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred ---ec-----CCCcEEEEEEcCCC-cEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 12 13679999999997 555555 56679999987543222111 111247899
Q ss_pred EEecCCCEEEEEeCCccEEEEeCC
Q 006424 468 SFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 468 ~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
+|+|+|++|++|+.||+|+||++.
T Consensus 669 ~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999999985
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=307.22 Aligned_cols=325 Identities=10% Similarity=0.085 Sum_probs=232.8
Q ss_pred CCCceee-ccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCC---Ce---EEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424 277 ESPLQEL-HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC---NQ---CLNVFDHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 277 ~~~~~~l-~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~---~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
++.+..+ .+|.+.|++++|+| ++ +|++|+.||+|++||+.+ +. ....+.|...|.+++|+| ++++|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEe
Confidence 4556777 88999999999999 77 999999999999999876 33 345557999999999999 999999999
Q ss_pred CCCcEEEEeCC---CCcEEEee-----------c--cCCCeEEEE--EccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424 348 IDGKVRIWGVC---EKRVVDWA-----------D--VRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409 (645)
Q Consensus 348 ~dg~i~vwd~~---~~~~~~~~-----------~--~~~~v~~l~--~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 409 (645)
.||.|++||+. .++..... . +...+.++. +++++.++++|+.||.|++||+++...... +.
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~ 209 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI-IE 209 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE-EE
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE-Ec
Confidence 99999999994 44333211 1 455677776 567899999999999999999988765332 22
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEe----cCCCEEEEEeCCcc
Q 006424 410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFT----TTGKHIISIGDDCR 484 (645)
Q Consensus 410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~s----p~~~~l~t~s~dg~ 484 (645)
.. .|...|++++|+|++ .+|++++.||.|++||++........ ..+...|.+++|+ |++.+|++|+.||.
T Consensus 210 ~~----~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 210 NS----PRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp CC----GGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred cC----CCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 21 134789999999997 89999999999999998865443333 2467789999665 56889999999999
Q ss_pred EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccc
Q 006424 485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWF 564 (645)
Q Consensus 485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~f 564 (645)
|++||+.++..... ...+.+.+..+.|+|++..+....- . -..+...+++++|
T Consensus 285 i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~-------------~----~~~~~~~v~~l~~ 337 (437)
T 3gre_A 285 LTIWNFVKGHCQYA----------FINSDEQPSMEHFLPIEKGLEELNF-------------C----GIRSLNALSTISV 337 (437)
T ss_dssp EEEEETTTTEEEEE----------EESSSSCCCGGGGSCBCSSGGGCCC-------------C----CCCSGGGGCCEEE
T ss_pred EEEEEcCCCcEEEE----------EEcCCCCCccceeccccccccccee-------------c----ccccCCceEEEEE
Confidence 99999987632111 1123344555667777766521110 0 0226678899999
Q ss_pred cCCCCCCcCCCCCCCcCCCCCCccCCCCCc-CC-------------------------hhhhHhhhhhccCCCCC--ccC
Q 006424 565 SNDGPCRGSATWPAEKLPLWDVTIDSDGYC-QD-------------------------PQQQRLQQQCLNNVDDV--RAI 616 (645)
Q Consensus 565 s~dg~~l~s~s~~d~~i~iWd~~~~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~~--~~~ 616 (645)
+ +++++++++. |+.|++||+.+++.... .. ............|...+ +++
T Consensus 338 ~-~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~ 415 (437)
T 3gre_A 338 S-NDKILLTDEA-TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST 415 (437)
T ss_dssp E-TTEEEEEEGG-GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred C-CceEEEecCC-CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence 9 8899999988 99999999987731100 00 00000000011123322 334
Q ss_pred CCC-cceEEEEecCCCeEeEEE
Q 006424 617 SAT-WGLVIVTAGCDGMIKTFH 637 (645)
Q Consensus 617 ~~~-d~~~ivt~s~Dg~Iriw~ 637 (645)
.+. ++.+|+||+.||+|+||+
T Consensus 416 ~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 416 CEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EESSSSEEEEEEETTSCEEEEC
T ss_pred eccCCceEEEEEcCCceEEEeC
Confidence 443 478999999999999995
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=274.97 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=205.7
Q ss_pred ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
+......+++.+|.+.|++++| |++++|++|+.||.|++||+.+
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----------------------------------- 48 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----------------------------------- 48 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----------------------------------
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----------------------------------
Confidence 3455677889999999999999 9999999999999999999976
Q ss_pred ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC---eEEEEe-cCCCcEEEEEEeeCCCC
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~---~~~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
......+..|...|.+++|+|++ ++++++.||.|++|++... +.+..+ .|...|.+++| +++
T Consensus 49 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 115 (313)
T 3odt_A 49 ----------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDG 115 (313)
T ss_dssp ----------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETT
T ss_pred ----------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCC
Confidence 34456677899999999999987 8999999999999998654 444444 48899999999 467
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 342 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
++++++.|+.|++|| .......+..|...+.+++|+| +++++++++.||.|++||... ....... .+...
T Consensus 116 ~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~-----~~~~~ 186 (313)
T 3odt_A 116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSG-----IHNDV 186 (313)
T ss_dssp EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECS-----SCSSC
T ss_pred EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEec-----cCccc
Confidence 999999999999999 4445556778999999999999 999999999999999999321 1111111 13578
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+.+++|+|++ . +++++.|+.|++||++..........|...|.+++|+|++ .|++++.||.|++||+.++
T Consensus 187 i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 187 VRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999997 4 9999999999999988655555555588999999999999 6899999999999999876
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-33 Score=289.02 Aligned_cols=252 Identities=14% Similarity=0.202 Sum_probs=204.3
Q ss_pred ccccccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 195 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
...+|.+.|++++|+|+ ...+++++.++.|++||+.++..
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~------------------------------------ 56 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE------------------------------------ 56 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC------------------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE------------------------------------
Confidence 34589999999999984 44677777777999999986322
Q ss_pred CceeccCCCceeec-----cCccCeEEEEEcCC----C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCC
Q 006424 271 EVFQIEESPLQELH-----GHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPID 339 (645)
Q Consensus 271 ~~~~~~~~~~~~l~-----~h~~~V~~l~~s~~----~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~ 339 (645)
+..+. .|...|++++|+|+ + +|++|+.||.|++||+.+++.+..+. |...|.+++|+|.+
T Consensus 57 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 127 (366)
T 3k26_A 57 ---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD 127 (366)
T ss_dssp ---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSC
T ss_pred ---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCC
Confidence 22222 36788999999987 4 79999999999999999999988886 99999999999977
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe------
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD------ 409 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------ 409 (645)
+++|++++.||.|++||+++++.... ..|...|.+++|+|++++|++++.||.|++||+++.........
T Consensus 128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 207 (366)
T 3k26_A 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 207 (366)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence 89999999999999999999887765 47899999999999999999999999999999986543211000
Q ss_pred ---------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--------------eEeecCC
Q 006424 410 ---------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPK 460 (645)
Q Consensus 410 ---------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--------------~~~~~~~ 460 (645)
.......|...|.+++|+ + .++++++.|+.|++||...... ......|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 000111256889999998 3 5999999999999999764321 2333447
Q ss_pred CCCeEEEEEecC--CCEEEEEeCCccEEEEeCCCCC
Q 006424 461 SGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 461 ~~~i~~v~~sp~--~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
...|.+++|+|+ +++|++|+.||.|++||+.+++
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 788999999999 9999999999999999998763
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=298.90 Aligned_cols=329 Identities=13% Similarity=0.128 Sum_probs=234.7
Q ss_pred cccccc-ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 191 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 191 ~~~~~l-~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
....++ .+|.+.|++++|+| ++++|++|+.||+|++||+.+.....
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-------------------------------- 100 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-------------------------------- 100 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence 355566 89999999999999 99999999999999999987511000
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---CCeEEEEec-------------CCCcEE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT 331 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---~~~~~~~~~-------------~~~~v~ 331 (645)
.......+ +|...|.+++|+|++ +|++|+.||+|++||++ +++....+. +...+.
T Consensus 101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 01112233 599999999999986 89999999999999995 444433221 455677
Q ss_pred EEE--EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 332 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 332 ~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
++. ++| +++++++|+.|+.|++||+++++... +.. |...|++++|+|++++|++|+.||.|++||++..... .
T Consensus 173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~ 250 (437)
T 3gre_A 173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI-R 250 (437)
T ss_dssp EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE-E
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE-E
Confidence 776 446 78899999999999999999987765 444 7899999999999999999999999999999975542 2
Q ss_pred EEeeccccccCCCCeEEEEEcC----CCCcEEEEEECCCeEEEEECCcce--eeEeec----------------------
Q 006424 407 KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVI--HKFKGL---------------------- 458 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~----~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~---------------------- 458 (645)
.+... +...|.+++|+| ++ .++++++.|+.|++||+.... ..+..+
T Consensus 251 ~~~~~-----~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 251 SWSFG-----DHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEBCT-----TCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEecC-----CCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 22212 236899996665 55 799999999999999987433 333321
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 459 --PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 459 --~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.|...|.+++|+ ++++|++|+.||.|++||+.+++........ -..........+++....+...... .
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 395 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP-------SRFSDVFIPTQVTANLTMLLRKMKR-T 395 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC---------CCCEEEEEEEETTEEEEEEECC---
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc-------cccCceEEEEEeecceEEEEEeccc-c
Confidence 155678999999 7899999999999999999987432211100 0012223344444544444322000 0
Q ss_pred cccCccccccccCCccCCCCccccCccccCC--CCCCcCCCCCCCcCCCCC
Q 006424 537 RDCSQKWDNLETAPWIRDSERFSLGSWFSND--GPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 537 ~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~d--g~~l~s~s~~d~~i~iWd 585 (645)
+ .........|...+++++|+++ +.++++++. ||.|++|+
T Consensus 396 ------~--~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-dG~I~iw~ 437 (437)
T 3gre_A 396 ------S--THSVDDSLYHHDIINSISTCEVDETPLLVACDN-SGLIGIFQ 437 (437)
T ss_dssp -------------------CCCEEEEEEEESSSSEEEEEEET-TSCEEEEC
T ss_pred ------c--ccccCcccccccceeeEeeeccCCceEEEEEcC-CceEEEeC
Confidence 0 0111223457788999999998 779999998 99999995
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-33 Score=294.26 Aligned_cols=300 Identities=15% Similarity=0.224 Sum_probs=232.8
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|.+.|++++|+|++++|++|+.||.|++||..
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~---------------------------------------------- 138 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT---------------------------------------------- 138 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------------------------------
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC----------------------------------------------
Confidence 4578899999999999999999999999999932
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCc---------------EEEEEEeeCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------------VTCVQFNPID 339 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~---------------v~~l~~~p~~ 339 (645)
+..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| +
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 217 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D 217 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C
Confidence 44567788899999999999987 89999999999999999999888875 3334 89999998 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
..+++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||++....... + . .|.
T Consensus 218 -~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~--~----~~~ 289 (425)
T 1r5m_A 218 -DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-F--Y----GHS 289 (425)
T ss_dssp -TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-E--C----CCS
T ss_pred -CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-e--c----CCC
Confidence 56889999999999999987654 4567899999999999999999999999999999987654322 1 1 235
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
..+.+++|+|++ ++++++.|+.|++||+...........|...+.+++|+|++++|++++.||.|++||+.++.....
T Consensus 290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 789999999996 999999999999999886655555555888999999999999999999999999999986532111
Q ss_pred cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCc--cccCccccCCCCCCcCCCC
Q 006424 499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSER--FSLGSWFSNDGPCRGSATW 576 (645)
Q Consensus 499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~fs~dg~~l~s~s~ 576 (645)
... -..++.. .+. .......+..+.. .+++++|+||++++++++.
T Consensus 368 ~~~--------~~~~~~~-----~~~--------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 368 SLY--------GNRDGIL-----NPL--------------------PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp ------------------------CE--------------------ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred eee--------ccccccc-----Ccc--------------------cchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 100 0000000 000 0000111233333 6778888888888888877
Q ss_pred CCCcCCCCCCc
Q 006424 577 PAEKLPLWDVT 587 (645)
Q Consensus 577 ~d~~i~iWd~~ 587 (645)
++.|++|+++
T Consensus 415 -dg~i~iw~~~ 424 (425)
T 1r5m_A 415 -LQEGSVVAIP 424 (425)
T ss_dssp -SSCCEEEECC
T ss_pred -CceEEEEeec
Confidence 8899999875
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-32 Score=285.40 Aligned_cols=304 Identities=13% Similarity=0.147 Sum_probs=224.6
Q ss_pred CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
.....+.+|...|++++|+|++ +|++|+.||.|++||+.+++....+ +|...|.+++|+|.++++|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3456788999999999999986 8999999999999999988777665 4899999999999556899999999999
Q ss_pred EEEeCCCCcEEEeecc---CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 353 RIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
++||+++.....+..+ ...|.+++|+|+++++++|+.||.|++||++... ...+. .|...|.+++|+|+
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEK------LHKAKVTHAEFNPR 215 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEE------CSSSCEEEEEECSS
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEec------cCCCcEEEEEECCC
Confidence 9999998766665444 4789999999999999999999999999995332 22222 23578999999999
Q ss_pred CCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 430 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
+..++++++.|+.|++||++.. ........|...|.+++|+| ++++|++++.||.|++||+.++...........
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~- 294 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH- 294 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB-
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc-
Confidence 8449999999999999998741 11222224889999999999 999999999999999999987743221110000
Q ss_pred eeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
..+.+...+ .+.|+|++. ...++|+|||++ +++. |+.|++||
T Consensus 295 --~~~~~~~~~-~~~~~p~~~--------------------------------~~~~~~s~dg~~--s~s~-d~~i~iwd 336 (383)
T 3ei3_B 295 --RQFQHLTPI-KATWHPMYD--------------------------------LIVAGRYPDDQL--LLND-KRTIDIYD 336 (383)
T ss_dssp --CCCTTSCCC-CCEECSSSS--------------------------------EEEEECBCCTTT--CTTC-CCCEEEEE
T ss_pred --cccccccce-EEeccCCCC--------------------------------ceEEEecCCccc--ccCC-CCeEEEEe
Confidence 000011111 123333322 233567788887 6666 89999999
Q ss_pred CccCCCCCcCChhhhHhhhh-hccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecC
Q 006424 586 VTIDSDGYCQDPQQQRLQQQ-CLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG 640 (645)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g 640 (645)
+.+++ ..... .+.+.... ++|++ ||.+|++|+ ||+|++|++..
T Consensus 337 ~~~~~----------~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 337 ANSGG----------LVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTTCC----------EEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred cCCCc----------eeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 98873 11111 11122222 24555 799999997 99999999753
No 72
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=280.66 Aligned_cols=294 Identities=17% Similarity=0.269 Sum_probs=232.5
Q ss_pred ccccccccccccCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 189 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 189 ~~~~~~~l~~H~~~V~~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
+....+.+++|.+.|++++|+|+ |++|++|+.||.|++||+.+..
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------------------- 75 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------------------- 75 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence 34456678999999999999999 6999999999999999998621
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEE--eeCCCCE
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY 342 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~--~p~~~~~ 342 (645)
......+.+|...|.+++|+|++ +|++++.||.|++||+++++.+....|...|.+++| +| ++++
T Consensus 76 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 143 (368)
T 3mmy_A 76 -----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC 143 (368)
T ss_dssp -----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred -----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence 11226677899999999999987 899999999999999999999998889999999999 77 8889
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
|++++.||.|++||+++++..........+.++.+. +..+++++.++.+.+|+++............ ....+.
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~ 216 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP-----LKHQHR 216 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS-----CSSCEE
T ss_pred EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc-----ccCCCc
Confidence 999999999999999998876666666667776665 4588999999999999998766543322211 224556
Q ss_pred EEEEcCCCC---cEEEEEECCCeEEEEECCcc-----eeeEeecCCCC------------CeEEEEEecCCCEEEEEeCC
Q 006424 423 GIQFSRDES---QRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 423 ~i~~s~~g~---~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~------------~i~~v~~sp~~~~l~t~s~d 482 (645)
++.+.++.. ..+++++.|+.|++||+... ...+.. |.. .|.+++|+|++++|++|+.|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 294 (368)
T 3mmy_A 217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD 294 (368)
T ss_dssp EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccC
Confidence 666655431 23999999999999998743 223333 333 79999999999999999999
Q ss_pred ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 483 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 483 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
|.|++||+.++..... ...+.+.+..++|+|++..|++.+.+.......+|+.
T Consensus 295 g~i~iwd~~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKT----------SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp SCEEEEETTTTEEEEE----------CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred CeEEEEECCCCcEEEE----------ecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999987632111 1124677899999999999998888765555555543
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=280.24 Aligned_cols=306 Identities=16% Similarity=0.187 Sum_probs=236.7
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
...+.+|.+.|++++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999997 89999999999999999999988886 899999999999 9999999999999999999
Q ss_pred CCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeecc----ccccCC--CCeEEEEE
Q 006424 358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSG--NKITGIQF 426 (645)
Q Consensus 358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~----~~~~~~--~~i~~i~~ 426 (645)
.+++......+...+.+++|+|+++++++++.+ |.|++||+.............. ....+. ..+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999988877799999999999999999999999 9999999986653222111110 011122 38999999
Q ss_pred cCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424 427 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505 (645)
Q Consensus 427 s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~ 505 (645)
+|++ .++++++.||.|++||+.. .........|...|.+++|+|++++|++++.||.|++||+.++...
T Consensus 184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------- 253 (369)
T 3zwl_B 184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL--------- 253 (369)
T ss_dssp CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------
T ss_pred cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee---------
Confidence 9997 7999999999999999886 4444444558889999999999999999999999999999876321
Q ss_pred eeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
..+.....+..++|+|++..++..+.+..... |.. ........+++||
T Consensus 254 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~---------------------------~~~~~~~~i~~~d 301 (369)
T 3zwl_B 254 --KKYETDCPLNTAVITPLKEFIILGGGQEAKDV---TTT---------------------------SANEGKFEARFYH 301 (369)
T ss_dssp --EEEECSSCEEEEEECSSSSEEEEEECCC-------------------------------------------CEEEEEE
T ss_pred --eeecCCCCceeEEecCCCceEEEeecCCCceE---EEE---------------------------ecCCCcceeEEEe
Confidence 12335667888999999998887665432211 000 0000133688999
Q ss_pred CccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecC
Q 006424 586 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG 640 (645)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g 640 (645)
..++. .......+...+ +.+++ |+.+|+||+.||+|++|++..
T Consensus 302 ~~~~~-----------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 302 KIFEE-----------EIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp TTTCC-----------EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECH
T ss_pred cCCCc-----------chhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcc
Confidence 88772 122222333333 45555 799999999999999999753
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.8e-32 Score=277.90 Aligned_cols=255 Identities=18% Similarity=0.281 Sum_probs=209.9
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++...
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------ 46 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------ 46 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence 34567899999999999999999999999999999999863210
Q ss_pred ceeccCCCceeeccCccCeEEEEEcC--CC-eEEEEeCCCcEEEEecCCC---------eEEEEe-cCCCcEEEEEEeeC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI 338 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~---------~~~~~~-~~~~~v~~l~~~p~ 338 (645)
......+.+|...|.+++|+| ++ +|++|+.||.|++||++++ +.+..+ .|...|.+++|+|
T Consensus 47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 120 (351)
T 3f3f_A 47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP- 120 (351)
T ss_dssp -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence 123567789999999999998 34 9999999999999999876 445555 4889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEeCCCCcEEE--------------eeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEec
Q 006424 339 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 339 ~--~~~l~s~s~dg~i~vwd~~~~~~~~--------------~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~ 399 (645)
+ ++++++++.||.|++||+++++... ...+...+.+++|+|+ +..+++++.++.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 7 8999999999999999998765321 1256778999999997 8999999999999888776
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEECCCeEEEEECCcc-------------------------
Q 006424 400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV------------------------- 451 (645)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~---~~l~~~s~dg~I~iwd~~~~------------------------- 451 (645)
....... ..+ ..|...|++++|+|++. .+|++++.||.|++||++..
T Consensus 201 ~~~~~~~-~~~----~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
T 3f3f_A 201 DGKLHVA-AKL----PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD 275 (351)
T ss_dssp TSCEEEE-EEC----CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred CCceeee-eec----CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence 6553221 112 23468999999999963 69999999999999997642
Q ss_pred ---------------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 452 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 452 ---------------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
........|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 222333458889999999999999999999999999999876
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-32 Score=288.35 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=224.6
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+.+..| ..+....|+|++++|++|+.||.|++||+.+
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------------------------------ 128 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF------------------------------------------ 128 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS------------------------------------------
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC------------------------------------------
Confidence 344455 4556668899999999999999999999876
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
......+.+|...|++++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.
T Consensus 129 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 129 ---NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT 204 (420)
T ss_dssp ---CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred ---cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence 33455667899999999999987 89999999999999999998888775 899999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEeec----cC---------------------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 352 VRIWGVCEKRVVDWAD----VR---------------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~----~~---------------------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
|++||+++++...... +. ..+.+++|+|+++++++|+.||.|++||+++......
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 9999999887765432 33 3444455678999999999999999999988765433
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
.. ..|...|.+++|+|++..++++++.||.|++||++.. ...+..+ +...+.++.+ +++++|++++.||
T Consensus 285 ~~------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 285 LP------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFDT 356 (420)
T ss_dssp EC------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTTE
T ss_pred cc------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCCc
Confidence 21 1235789999999998449999999999999998753 3444443 6677888855 6789999999999
Q ss_pred cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc---cccccCCCC
Q 006424 484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT---EQKSLCSSS 535 (645)
Q Consensus 484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~---~l~~~~~~~ 535 (645)
.|++|++.....+........ ......+.+.+..++|+|++. .++..+.++
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFET-PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTS-CEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred cEEEEeccCCCCCccceeccC-ccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 999999987543322211111 112345667788999999999 566665554
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=291.99 Aligned_cols=300 Identities=14% Similarity=0.222 Sum_probs=219.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.|.+.|++++|+|+|++||+|+.||.|+|||+.++....... ..+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------------~~~~ 71 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------------RGEY 71 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------------CCCE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------------ccce
Confidence 478899999999999999999999999999998743110000 0001
Q ss_pred CCceeeccCc------------cCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeEE---------------------
Q 006424 278 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL--------------------- 321 (645)
Q Consensus 278 ~~~~~l~~h~------------~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~~--------------------- 321 (645)
.....+.+|. ..|.+++|+|++ .|++++.|++|++||+.++...
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 2356777888 889999999974 7999999999999999765432
Q ss_pred ------------------EE--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEE--------eeccCCCe
Q 006424 322 ------------------NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI 372 (645)
Q Consensus 322 ------------------~~--~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~--------~~~~~~~v 372 (645)
.. ..|...|.+++|+| ++++|++| .|+.|++||++. +.... +..|...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 229 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI 229 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence 12 25889999999999 99999998 799999999984 44443 45788999
Q ss_pred EEEEEccCC-CEEEEEecCCeEEEEEecCCcee---eeEEeeccc------cccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424 373 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLK---LEKVDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSK 442 (645)
Q Consensus 373 ~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~ 442 (645)
++++|+|++ ++|++|+.||.|++||+++.... ...+..+.. ...|...|.+++|+|+| .+|++++. +.
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~ 307 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS 307 (447)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence 999999998 99999999999999999887641 111111110 00112389999999998 89999998 99
Q ss_pred EEEEECCc---ceeeEeecCCCC-------------CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC----
Q 006424 443 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN---- 502 (645)
Q Consensus 443 I~iwd~~~---~~~~~~~~~~~~-------------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---- 502 (645)
|++||++. ....+..+.... .+..++|+|++++|++|+.||.|++||+.+++........
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 387 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence 99999864 344444421111 1334999999999999999999999999887532110000
Q ss_pred ------------------CcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424 503 ------------------SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 535 (645)
Q Consensus 503 ------------------~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~ 535 (645)
.............++.++|+|++..|+..+.+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 000000112345678899999999999777764
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=312.16 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=210.3
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--------------------------------------- 42 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------- 42 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence 35688999999999999999999999999999999987421
Q ss_pred eeccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI 344 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~ 344 (645)
......+.+|.+.|++++|+++ + +|++|+.||.|++||+.+++ .+..+ .|...|++++|+| + +++++
T Consensus 43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~ 117 (753)
T 3jro_A 43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL 117 (753)
T ss_dssp ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence 3446778899999999999876 5 89999999999999999886 44444 4899999999999 7 89999
Q ss_pred EEeCCCcEEEEeCCCC---cEEEeeccCCCeEEEEEcc-------------CCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424 345 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp-------------~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
+|+.||.|++||++++ .......|...|.+++|+| ++..+++|+.||.|++||++.........
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 9999999999999886 3455678999999999999 58999999999999999998775432211
Q ss_pred eeccccccCCCCeEEEEEcCC---CCcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 409 DFHDRKKTSGNKITGIQFSRD---ESQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 409 ~~~~~~~~~~~~i~~i~~s~~---g~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
.....|...|++++|+|+ + .++++++.||.|++||..... .......+...|.+++|+|++++|++|+
T Consensus 198 ---~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 198 ---STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp ---EEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred ---eeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 112235689999999999 6 899999999999999977532 2233344788999999999999999999
Q ss_pred CCccEEEEeCCCCC
Q 006424 481 DDCRVYVWNYDELC 494 (645)
Q Consensus 481 ~dg~I~iwd~~~~~ 494 (645)
.||.|++|++....
T Consensus 274 ~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 274 GDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCCC
Confidence 99999999998653
No 78
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-32 Score=277.55 Aligned_cols=279 Identities=15% Similarity=0.107 Sum_probs=224.0
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
...+|.+.|++++|+|++++|++|+.||.|++|++.++..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~---------------------------------------- 45 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK---------------------------------------- 45 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence 3468999999999999999999999999999999976321
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEec-CCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~-~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
......+.+|...|.+++|+|++ +|++|+.||.|++||+ .+++...... |...|.+++|+| ++++++++.|
T Consensus 46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d 121 (342)
T 1yfq_A 46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD 121 (342)
T ss_dssp --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence 01234555899999999999875 5999999999999999 8887766667 999999999998 7899999999
Q ss_pred CcEEEEeCCC---------CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC-CceeeeEEeeccccccCCC
Q 006424 350 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 350 g~i~vwd~~~---------~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 419 (645)
+.|++||+++ ++......+...+.+++|+|++ +++++.+|.|++||++. .......... .+..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~ 194 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES-----GLKY 194 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC-----SCSS
T ss_pred CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec-----CCCC
Confidence 9999999987 6655555688999999999987 99999999999999987 5433222211 2347
Q ss_pred CeEEEEEcC-CCCcEEEEEECCCeEEEEECCcc--------eeeEeecC-------CCCCeEEEEEecCCCEEEEEeCCc
Q 006424 420 KITGIQFSR-DESQRIMITSEDSKLRILDGVDV--------IHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 420 ~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~~-------~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
.+.+++|+| ++ .++++++.||.|++|+.... ...+..+. |...|.+++|+|++++|++++.||
T Consensus 195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 899999999 87 89999999999999997533 33444421 244999999999999999999999
Q ss_pred cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
.|++||+.+++.... ..-++.+.+.+++ |++..|++.+.|+.
T Consensus 274 ~i~vwd~~~~~~~~~---------~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 274 IISCWNLQTRKKIKN---------FAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTTTEEEEE---------CCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eEEEEcCccHhHhhh---------hhcccCCCceEec--CCCCeEEEEecCCc
Confidence 999999987632111 1111256677777 88988888777754
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-32 Score=286.17 Aligned_cols=304 Identities=13% Similarity=0.134 Sum_probs=233.4
Q ss_pred hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424 95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK 174 (645)
Q Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (645)
+...|.+|...|..++|.+ .. +++.+. |+.++.|- -....
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~-l~s~~~------------dg~i~iw~----------------~~~~~--------- 47 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SF-TVSCSG------------DGYLKVWD----------------NKLLD--------- 47 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SE-EEEEET------------TSEEEEEE----------------SBCCT---------
T ss_pred hhhhhhhhhcCeEEEEecC--Ce-EEEEcC------------CCEEEEEE----------------CCCcc---------
Confidence 4557889999999999988 33 666666 55554440 00000
Q ss_pred hHhhhcccccccccccccccccccccCcEEEEEECCC----C---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCccc
Q 006424 175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 247 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 247 (645)
..........+.+|.+.|++++|+|+ + ++|++|+.||.|++||+.++...
T Consensus 48 -----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~------------ 104 (397)
T 1sq9_A 48 -----------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET------------ 104 (397)
T ss_dssp -----------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT------------
T ss_pred -----------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc------------
Confidence 00012245567799999999999999 9 99999999999999999863210
Q ss_pred CCCCceEEecccCCCcceeecCCCceeccCCCceeeccC-----ccCeEEEEEc----CCC-e-EEEEeCCCcEEEEecC
Q 006424 248 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVG 316 (645)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~l~~s----~~~-~-l~s~s~dg~I~iwd~~ 316 (645)
.......+.+| ...|.+++|+ |++ . |++++.||.|++||+.
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 105 ----------------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp ----------------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred ----------------------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 00115667778 5999999999 887 7 9999999999999998
Q ss_pred C------CeEEE-----Ee--------cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec---c---CC
Q 006424 317 C------NQCLN-----VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RD 370 (645)
Q Consensus 317 ~------~~~~~-----~~--------~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~---~---~~ 370 (645)
+ ++.+. .+ .|...|.+++|+| ++ ++++++.|+.|++||+++++... +.. | ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 8 55544 44 2688999999999 88 99999999999999999887665 444 6 89
Q ss_pred CeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeecc-------ccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 371 VISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 371 ~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.|.+++|+|++++|++++.| |.|++||+++...... +.... ....|...|.+++|+|++ .+|++++.|
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 312 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD 312 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence 99999999999999999999 9999999987764322 21100 000145889999999997 899999999
Q ss_pred CeEEEEECCcceeeEeec------CC---------------CCCeEEEEEecCC----------CEEEEEeCCccEEEEe
Q 006424 441 SKLRILDGVDVIHKFKGL------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWN 489 (645)
Q Consensus 441 g~I~iwd~~~~~~~~~~~------~~---------------~~~i~~v~~sp~~----------~~l~t~s~dg~I~iwd 489 (645)
+.|++||+.......... .| ...|.+++|+|++ ++|++++.||.|++|+
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999987554444433 45 8899999999998 7999999999999999
Q ss_pred CCCC
Q 006424 490 YDEL 493 (645)
Q Consensus 490 ~~~~ 493 (645)
+.++
T Consensus 393 ~~~g 396 (397)
T 1sq9_A 393 EAGG 396 (397)
T ss_dssp EEC-
T ss_pred cCCC
Confidence 9875
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-32 Score=282.99 Aligned_cols=245 Identities=19% Similarity=0.342 Sum_probs=205.0
Q ss_pred cccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 198 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 198 ~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.|.+.|++++|+|+ |++|++|+.||.|++||+.+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------ 104 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------ 104 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence 37789999999999 67999999999999999986
Q ss_pred eccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEe----cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
.+.+..+.+|...|.+++|+| ++ +|++++.||.|++||+++++.+..+ .|...|.+++|+| ++++|++++
T Consensus 105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 180 (366)
T 3k26_A 105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG 180 (366)
T ss_dssp ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence 445677889999999999999 65 8999999999999999999998887 5889999999999 999999999
Q ss_pred CCCcEEEEeCCCCcEEE-----------------------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424 348 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~-----------------------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~ 398 (645)
.||.|++||+++++... ...|...|.+++|+ ++++++++.||.|++||+
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence 99999999998765332 22388999999998 779999999999999999
Q ss_pred cCCceeeeE-------EeeccccccCCCCeEEEEEcCC--CCcEEEEEECCCeEEEEECCcc------eeeEeecCCCCC
Q 006424 399 SGNDLKLEK-------VDFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS 463 (645)
Q Consensus 399 ~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~s~~--g~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~ 463 (645)
......... .........|...|.+++|+|+ + .+|++++.||.|++||+... ...+..+.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence 876541110 0011112234578999999999 7 89999999999999998742 224445444799
Q ss_pred eEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 464 QMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 464 i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
|.+++|+|++++|++++.||.|++||+.
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999999999999985
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-31 Score=276.42 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=166.4
Q ss_pred cCccCeEEEEEcCCC-eEE--EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424 285 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 361 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 361 (645)
.+...+.+++|+||| +++ +++.|++|++||+.+++++..+.|...|.+++|+| +++++++++.+ .+++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 455678999999998 555 44578999999999999999999999999999999 99999999855 56666666655
Q ss_pred EEE---eeccCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 362 VVD---WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 362 ~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
... ...|...|.+++|+|+++++++++.|+ .+.+|++........... ....|...|++++|+|+| .+|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~Spdg-~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK---QVTNRFKGITSMDVDMKG-ELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE---EEESSCSCEEEEEECTTS-CEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee---eecCCCCCeEeEEECCCC-Cce
Confidence 432 356778899999999999999999887 688899877654332111 112245789999999998 899
Q ss_pred EEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 435 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++|+.|+.|+|||+.+....... ..|...|++++|+|||++||+||.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999876554443 458999999999999999999999999999999755
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=277.54 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=206.1
Q ss_pred cccCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 198 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 198 ~H~~~V~~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
+|.+.|++++|+|+ |++|++|+.||.|++||+.++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------------------------------ 100 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP------------------------------------------ 100 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC------------------------------------------
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC------------------------------------------
Confidence 79999999999998 699999999999999999872
Q ss_pred ccCCCceeeccCccCeEEEEE------cCCC-eEEEEeCCCcEEEEecCCCe-EEEEec-C----CCcEEEEE----Eee
Q 006424 275 IEESPLQELHGHKGDVLDLAW------SNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HNYVTCVQ----FNP 337 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~------s~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~~-~----~~~v~~l~----~~p 337 (645)
...+..+.+|...|.++.| +|++ +|++++.||.|++||+.+++ .+..+. + ...+.+++ |+|
T Consensus 101 --~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 101 --EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp --SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred --CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 2256788899999999965 5666 89999999999999999876 566653 2 33899998 677
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 414 (645)
Q Consensus 338 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 414 (645)
+++++++++.|+.|++||+++++......+...|.+++|+| ++.++++++.||.|++||++....... +... ..
T Consensus 179 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~ 255 (357)
T 3i2n_A 179 -EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-FASV-SE 255 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-EEEE-EE
T ss_pred -CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-eeee-cc
Confidence 89999999999999999999999888888999999999999 999999999999999999986543222 1110 11
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-------------------eeeEeecCCCCCeEEEEEecCCCE
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IHKFKGLPKSGSQMSASFTTTGKH 475 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-------------------~~~~~~~~~~~~i~~v~~sp~~~~ 475 (645)
..|...|++++|+|++..++++++.||.|++||+... ........|...|.+++|+|++++
T Consensus 256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 2346899999999998448999999999999997631 122333458889999999999999
Q ss_pred EE-EEeCCccEEEEeCCCC
Q 006424 476 II-SIGDDCRVYVWNYDEL 493 (645)
Q Consensus 476 l~-t~s~dg~I~iwd~~~~ 493 (645)
|+ +++.||.|++||+.+.
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 98 8999999999999865
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-33 Score=291.45 Aligned_cols=307 Identities=10% Similarity=0.052 Sum_probs=229.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.-...|.+++|||||+++||++.|++|+ |... .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~---------------------------------------------~ 45 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKY---------------------------------------------A 45 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECC---------------------------------------------C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccc---------------------------------------------c
Confidence 4557899999999999999999999999 6443 1
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
..+.+|...|.+++|+|+| .++.+.+|+.+.. .+..+.|...|.+++|+| ++..||+++.||.|++||.
T Consensus 46 ---~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~ 114 (588)
T 2j04_A 46 ---KDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKD 114 (588)
T ss_dssp ---SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEET
T ss_pred ---ceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence 2336899999999999998 4566555554322 233445788999999999 9999999999999999996
Q ss_pred CCCcEEEeeccCC-----CeEEEEEccCCCEEEEEecCCeEEEEEecCCce--e--eeEEeeccccccCCCCeEEEEEcC
Q 006424 358 CEKRVVDWADVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDL--K--LEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 358 ~~~~~~~~~~~~~-----~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
.+ ....+. |.. .+.+++|||||++|++|+.||+|++||+.++.. + .....+..+...|...|.+++|+|
T Consensus 115 ~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 115 NK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp TE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred Cc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 44 333334 554 499999999999999999999999999998753 0 011122223344678999999999
Q ss_pred CCCcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc-CCCcccC
Q 006424 429 DESQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQKN 502 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~ 502 (645)
+| +++++.|+.|++||+.... ..+. ..|...|.+++|+ |+.||+++ +++|++||+.+++. .......
T Consensus 193 dg---Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~ 265 (588)
T 2j04_A 193 DV---LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL 265 (588)
T ss_dssp TE---EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred Cc---EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence 95 8899999999999987433 2232 2377899999999 68999997 69999999998865 3331223
Q ss_pred Ccceeeee--ecCCcEEEEec--------------CCCCccccccCCCCccccCccccccccCCccCCCCccccCccccC
Q 006424 503 SVRSCEHF--FSEGVSVAVQW--------------PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN 566 (645)
Q Consensus 503 ~~~~~~~~--~~~g~~~~v~~--------------s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~ 566 (645)
.....+.| ++++..+++++ +||+..++.. .+.+..|+..........+...+++++|||
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~-----d~~v~lW~~~g~~l~~~~~~~~I~~va~SP 340 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYL-----EKKFKKWSTIWNEFNNYETTLVIHGISLSP 340 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHH-----HHHHHHTTTTTTSSSSSCCEEEEEEEEECT
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEc-----CCEEEEEECCCCceeeeccceEEEEEEECC
Confidence 33444577 78887778777 6667666653 355677876433333333455689999999
Q ss_pred CCCCCcCCCC
Q 006424 567 DGPCRGSATW 576 (645)
Q Consensus 567 dg~~l~s~s~ 576 (645)
||+.+|+++.
T Consensus 341 dG~~lA~~~~ 350 (588)
T 2j04_A 341 DGYSIAIVYD 350 (588)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999987765
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-31 Score=265.35 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=231.4
Q ss_pred chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424 94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN 173 (645)
Q Consensus 94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (645)
.++..|.+|...|..++| +++.. +++.+. |+.++.|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~------------dg~v~vw------------------------------ 44 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSR------------DGTVRLW------------------------------ 44 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEET------------TSEEEEE------------------------------
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEc------------CCcEEEE------------------------------
Confidence 466688999999999999 77666 666666 5544444
Q ss_pred hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424 174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253 (645)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (645)
. .........+..|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 45 -----~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-------------------- 92 (313)
T 3odt_A 45 -----S-------KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS-------------------- 92 (313)
T ss_dssp -----E-------ESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT--------------------
T ss_pred -----E-------CCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC--------------------
Confidence 0 01112344567899999999999999999999999999999987621
Q ss_pred EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEE
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTC 332 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~ 332 (645)
....+..+.+|...|.+++|+ .+.+++++.|+.|++|| .++....+ .|...+.+
T Consensus 93 ----------------------~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 93 ----------------------GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp ----------------------TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred ----------------------CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence 134567788999999999994 45999999999999999 56666655 48899999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424 333 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 411 (645)
Q Consensus 333 l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 411 (645)
++|+|.+++++++++.|+.|++||.... ...+.. +...+.+++|+|++. +++++.||.|++||+++...... +.
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~~-- 222 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-YE-- 222 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-EE--
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-hh--
Confidence 9999878899999999999999994333 333444 889999999999998 99999999999999987764322 22
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.|...|++++|+|++ .+++++.||.|++||+.+.........+...|.+++|+|+++ +++++.||.|++||+.
T Consensus 223 ----~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 223 ----GHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ----CCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred ----cCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 235789999999997 589999999999999886554444455788999999999998 6678999999999998
Q ss_pred CCCc
Q 006424 492 ELCF 495 (645)
Q Consensus 492 ~~~~ 495 (645)
++..
T Consensus 296 ~~~~ 299 (313)
T 3odt_A 296 KSRW 299 (313)
T ss_dssp GGGC
T ss_pred CCce
Confidence 7743
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-32 Score=282.16 Aligned_cols=251 Identities=11% Similarity=0.146 Sum_probs=190.6
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++..
T Consensus 47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------- 89 (377)
T 3dwl_C 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------- 89 (377)
T ss_dssp ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-------------------------------------
T ss_pred EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-------------------------------------
Confidence 4566889999999999999999999999999999999987320
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEe-c-CCCcEEEEEEeeCCCCEEEE
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-D-HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~-~-~~~~v~~l~~~p~~~~~l~s 345 (645)
......+.+|...|.+++|+|++ +|++++.|+.|++||+++++. ...+ . |...|.+++|+| ++++|++
T Consensus 90 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~ 163 (377)
T 3dwl_C 90 -----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAA 163 (377)
T ss_dssp -----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEE
T ss_pred -----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEE
Confidence 12456677899999999999987 899999999999999998873 4555 3 899999999999 9999999
Q ss_pred EeCCCcEEEEeCCC------------------CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424 346 GSIDGKVRIWGVCE------------------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 346 ~s~dg~i~vwd~~~------------------~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 407 (645)
++.|+.|++||++. +++.....|...|++++|+|++++|++++.||.|++||+.+...+...
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 99999999999852 334443388999999999999999999999999999999987753210
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-----------------------------------
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------------------------------- 452 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~----------------------------------- 452 (645)
......|...|.+++|+|++ .+|++++.++.+ +|+.....
T Consensus 244 ---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 244 ---LITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp ---CCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred ---eEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 11122345789999999997 788888766665 66543100
Q ss_pred ---eeEe--------------ecCCCCCeEEEEEecCC-C---EEEEEeCCccEEEEeC
Q 006424 453 ---HKFK--------------GLPKSGSQMSASFTTTG-K---HIISIGDDCRVYVWNY 490 (645)
Q Consensus 453 ---~~~~--------------~~~~~~~i~~v~~sp~~-~---~l~t~s~dg~I~iwd~ 490 (645)
..+. ...|...|+++.+.+.. . .|+|||.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 01278899999976543 3 6999999999999985
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-31 Score=275.89 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=221.0
Q ss_pred cccccCc--EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 196 IQAHKGC--IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 196 l~~H~~~--V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+|.+. +.++.|++ ..+++++.||.|++||+.++.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~---------------------------------------- 124 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS---------------------------------------- 124 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC----------------------------------------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc----------------------------------------
Confidence 3466665 45566665 568889999999999998742
Q ss_pred eccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
....+. .|...|.+++|+|++ +|++|+.||.|++||+.+++.+..+ .|...|.+++|+ ++++++++.||
T Consensus 125 -----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg 196 (401)
T 4aez_A 125 -----VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSG 196 (401)
T ss_dssp -----EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred -----EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCC
Confidence 233333 388999999999987 8999999999999999999988887 488999999994 57999999999
Q ss_pred cEEEEeCCC-Cc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 351 KVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 351 ~i~vwd~~~-~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
.|++||++. +. ...+..|...|.+++|+|++++|++|+.||.|++||+++...... +. .|...|.+++|+|
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~----~~~~~v~~~~~~p 269 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---KT----NHNAAVKAVAWCP 269 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE---EC----CCSSCCCEEEECT
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE---ec----CCcceEEEEEECC
Confidence 999999984 33 455778999999999999999999999999999999987654322 11 2357899999999
Q ss_pred CCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCCCcCCCcccCCc
Q 006424 429 DESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSV 504 (645)
Q Consensus 429 ~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~ 504 (645)
++..++++++ .|+.|++||+......... .+...+.+++|+|+++++++++ .||.|++||+.++...
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------- 340 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------- 340 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------
Confidence 8877888876 7999999998754433333 2667899999999999999954 8999999998764110
Q ss_pred ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424 505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW 584 (645)
Q Consensus 505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW 584 (645)
.... ...+...+.+++|+|||+++++++. |+.|++|
T Consensus 341 -~~~~------------------------------------------~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw 376 (401)
T 4aez_A 341 -KQVD------------------------------------------IPAHDTRVLYSALSPDGRILSTAAS-DENLKFW 376 (401)
T ss_dssp -EEEE------------------------------------------EECCSSCCCEEEECTTSSEEEEECT-TSEEEEE
T ss_pred -eEEE------------------------------------------ecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEE
Confidence 0000 0112334556667777777777776 8889999
Q ss_pred CCccC
Q 006424 585 DVTID 589 (645)
Q Consensus 585 d~~~~ 589 (645)
++.++
T Consensus 377 ~~~~~ 381 (401)
T 4aez_A 377 RVYDG 381 (401)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 98877
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-30 Score=276.49 Aligned_cols=261 Identities=20% Similarity=0.344 Sum_probs=213.4
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
...++.+|.+.|++++|+|++ +|++|+.||+|++||+.+
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~---------------------------------------- 192 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK---------------------------------------- 192 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT----------------------------------------
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC----------------------------------------
Confidence 345678999999999999988 999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEc--CCC-eEEEEeCCCcEEEEecCCCeEE-----------------------EEe-
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWS--NSN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NVF- 324 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s--~~~-~l~s~s~dg~I~iwd~~~~~~~-----------------------~~~- 324 (645)
+..+..+.+|...|.+++|+ +++ ++++|+.|++|++||+.++... ..+
T Consensus 193 -----~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 193 -----GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp -----TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred -----CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 34567788999999999998 454 8999999999999999876532 222
Q ss_pred cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424 325 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 403 (645)
Q Consensus 325 ~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~ 403 (645)
+|...+.++ ++ +++++++|+.|+.|++||+++++... +..|...|.+++|+|+++++++|+.||.|++||+++...
T Consensus 268 ~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 268 GHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp CCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred CccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 477778777 45 78999999999999999999887665 667899999999999999999999999999999987764
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
... +. .|...|.++.|++ .++++++.||.|++||+.+....+... +...+..++|+|++++|++|+ ||
T Consensus 345 ~~~---~~----~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 345 MYT---LQ----GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp EEE---EC----CCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT
T ss_pred EEE---Ee----CCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CC
Confidence 322 22 2457899999984 589999999999999998766655553 666788889999999999998 89
Q ss_pred cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecC
Q 006424 484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 522 (645)
Q Consensus 484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s 522 (645)
.|++||+.+++...... ..+.+.+.+++|+
T Consensus 413 ~i~iwd~~~g~~~~~~~---------~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHANI---------LKDADQIWSVNFK 442 (464)
T ss_dssp EEEEEETTTCCEEESCT---------TTTCSEEEEEEEE
T ss_pred eEEEEECCCCcEEehhh---------ccCCCcEEEEEec
Confidence 99999999885432211 1124556677775
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=8.5e-31 Score=271.30 Aligned_cols=250 Identities=13% Similarity=0.178 Sum_probs=203.8
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++..
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------------- 86 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW------------------------------------- 86 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------------------
Confidence 4556789999999999999999999999999999999976321
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEe--cCCCcEEEEEEeeCCCCEEEE
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF--DHHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~--~~~~~v~~l~~~p~~~~~l~s 345 (645)
.....+.+|...|.+++|+|++ +|++++.|+.|++||++.+.. ...+ .|...|.+++|+| ++++|++
T Consensus 87 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 159 (372)
T 1k8k_C 87 ------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA 159 (372)
T ss_dssp ------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred ------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEE
Confidence 1123346789999999999987 899999999999999987762 2332 4788999999999 9999999
Q ss_pred EeCCCcEEEEeCC------------------CCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 346 GSIDGKVRIWGVC------------------EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 346 ~s~dg~i~vwd~~------------------~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
++.|+.|++||++ .++.. .+..|...|.+++|+|++++|++++.||.|++||+++......
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 9999999999964 44444 4568889999999999999999999999999999987764322
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--cee---------------------e---------
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIH---------------------K--------- 454 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~---------------------~--------- 454 (645)
+. .+...+.+++|+|++ .+++++ .|+.|++|++.. ..- .
T Consensus 240 -~~------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 240 -LA------SETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp -EE------CSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred -Ec------cCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 22 234689999999997 666666 999999999765 210 0
Q ss_pred --------Eee-cCCCCCeEEEEEe-cCC---CEEEEEeCCccEEEEeCCCCC
Q 006424 455 --------FKG-LPKSGSQMSASFT-TTG---KHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 455 --------~~~-~~~~~~i~~v~~s-p~~---~~l~t~s~dg~I~iwd~~~~~ 494 (645)
... ..|...|++++|+ ++| ++|++|+.||.|++||+.+++
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 2588899999966 666 999999999999999997653
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=5.1e-30 Score=259.33 Aligned_cols=237 Identities=16% Similarity=0.270 Sum_probs=190.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce-
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ- 281 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 281 (645)
.++|+||+++ +||+| .|++|+|||+.+++ .++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~---------------------------------------------~~~~ 60 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGD---------------------------------------------ILQL 60 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCC---------------------------------------------EEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCC---------------------------------------------EEEE
Confidence 5789999986 77766 59999999998743 233
Q ss_pred -eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 282 -ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 282 -~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
.+.+|...|++++|+|++ +|++|+.||+|++||+++++.+..+. |...+.++.+ ++..+++++.++.+++|+..
T Consensus 61 ~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 61 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETT
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecC
Confidence 345788899999999997 89999999999999999999988875 7777776655 56899999999999999987
Q ss_pred CCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE-
Q 006424 359 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM- 435 (645)
Q Consensus 359 ~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~- 435 (645)
... ......|...+..+.++++++++++++.||.|++||+++.+....... ....+...|.++.++|++...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEE
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEE
Confidence 654 345778999999999999999999999999999999987654322111 11223578999999998766554
Q ss_pred -EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCC
Q 006424 436 -ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDEL 493 (645)
Q Consensus 436 -~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~ 493 (645)
+++.++.|++||......... ..+...+..+.|+|+++.+++++ .|+.|++||+.++
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred EecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 456789999999875443333 23677899999999999988765 7999999999876
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=3.8e-30 Score=273.00 Aligned_cols=281 Identities=20% Similarity=0.307 Sum_probs=222.0
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|...|+|+.| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--------------------------------------------- 162 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--------------------------------------------- 162 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence 456778999887 789999999999999999986
Q ss_pred CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
++....+.+|.+.|.+++| .++.|++|+.||+|++||+.+++.+..+. |...|.+++|+ ++++++|+.||.|++|
T Consensus 163 ~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred CeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence 4456778899999999999 34599999999999999999999988875 88899999996 4699999999999999
Q ss_pred eCCCCcE----EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 356 GVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 356 d~~~~~~----~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
|++++.. ....+|...|.+++| +++++++|+.||.|++||+++...... + . .|...|.++.++ +
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~--~----~~~~~v~~~~~~--~- 306 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-L--N----GHKRGIACLQYR--D- 306 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-E--E----CCSSCEEEEEEE--T-
T ss_pred eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-E--c----CCCCcEEEEEeC--C-
Confidence 9987654 346788999999998 788999999999999999988765332 2 2 234789999994 3
Q ss_pred cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
.++++++.||.|++||++..........|...|.+++| ++++|++|+.||.|++||+.++........
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------- 374 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG---------- 374 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT----------
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc----------
Confidence 69999999999999998865555555568899999998 789999999999999999876531111000
Q ss_pred cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424 512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
... +. ....|...+++++| |+..+++++. |+.|++||+.+.
T Consensus 375 --~~~-----------~~---------------------~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~ 415 (435)
T 1p22_A 375 --TLC-----------LR---------------------TLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLND 415 (435)
T ss_dssp --TTE-----------EE---------------------EECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC----
T ss_pred --chh-----------ee---------------------eccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCC
Confidence 000 00 01234445666667 7788888887 899999999876
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=5.1e-30 Score=257.27 Aligned_cols=251 Identities=17% Similarity=0.196 Sum_probs=196.9
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC--CeEEEEe-cCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW 355 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~--~~~~~~~-~~~~~v~~l~~~p~-~~~~l~s~s~dg~i~vw 355 (645)
..+.+|.+.|++++|+|++ +|++|+.|++|++||+.. .+.+..+ +|...|.+++|+|. ++++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4577899999999999998 999999999999999974 3555666 59999999999862 37899999999999999
Q ss_pred eCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 356 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 356 d~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|+++++ ...+..|...|.+++|+|+ |.+|++++.||.|++||++....... ..+. .|...|.+++|+|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~----~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIID----AHAIGVNSASWAPAT 157 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEE----CCSSCEEEEEECCCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeee----cccCccceEeecCCc
Confidence 998763 3446678999999999997 89999999999999999986532111 1112 245789999999973
Q ss_pred ------------CcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCC---CEEEEEeCCccEEEEeCC
Q 006424 431 ------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 431 ------------~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~ 491 (645)
..+|++++.|+.|++||++... .......|...|.+++|+|++ .+|++++.|++|+|||++
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 2689999999999999976422 222334588999999999985 899999999999999997
Q ss_pred CCCcCCCcccCCcceeee-eecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 492 ELCFPSSKQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
+....... .... ..+.+.+..++|+|++..|++.+.|+ .+++|+.
T Consensus 238 ~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~las~~~D~---~v~lw~~ 283 (297)
T 2pm7_B 238 NEQGPWKK------TLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKE 283 (297)
T ss_dssp STTSCCEE------EESSSSCCSSCEEEEEECSSSCCEEEEETTS---CEEEEEE
T ss_pred CCCCccce------eeeecccCCCcEEEEEECCCCCEEEEEcCCC---cEEEEEE
Confidence 64321110 0000 12356788999999999999887764 3567765
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=4.5e-31 Score=276.81 Aligned_cols=296 Identities=15% Similarity=0.176 Sum_probs=219.5
Q ss_pred CCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec--------------CCCcEEEEEEeeCCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDD 340 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~~p~~~ 340 (645)
......+.+|.+.|++++|+| ++ +|++|+.||.|++||+.+++....+. |...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345667788999999999999 76 89999999999999998876554442 889999999999677
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
++|++++.||.|++||+.+++......+...+.++.++|. +.++++++.+|.|++||+++...... + . .|
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~--~----~~ 185 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L--Q----GH 185 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E--C----CC
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e--c----CC
Confidence 7999999999999999999998888889999999999984 45999999999999999987654322 1 1 24
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---eeEe-------------ecCCCCCeEEEEEecCCCEEEEEeC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~---~~~~-------------~~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
...|.+++|+|++..++++++.||.|++||++... ..+. ...|...|.+++|+|++++|++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 57899999999985579999999999999986432 1111 1347889999999999999999999
Q ss_pred CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccC
Q 006424 482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG 561 (645)
Q Consensus 482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 561 (645)
||.|++||+.++............ ....... ..
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~-------------------------------------------~~ 298 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCN----NSKKGLK-------------------------------------------FT 298 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCC----CCSSCCC-------------------------------------------CE
T ss_pred CCeEEEEECCCCccceeccccccc----cccccce-------------------------------------------eE
Confidence 999999999987432211100000 0000000 00
Q ss_pred ccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEec
Q 006424 562 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 562 ~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
... ..+..++.++. ++.|++||+.++. .......|...+ +++++ ++.+|+||+.||+|++|+..
T Consensus 299 ~~~-~~~~~~~~~~~-~~~i~v~d~~~~~-----------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 299 VSC-GCSSEFVFVPY-GSTIAVYTVYSGE-----------QITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp ECC-SSSSCEEEEEE-TTEEEEEETTTCC-----------EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred Eec-CCCceEEEEec-CCEEEEEECcCCc-----------ceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence 001 11222333333 6789999998872 122222333333 44555 78999999999999999975
Q ss_pred C
Q 006424 640 G 640 (645)
Q Consensus 640 g 640 (645)
.
T Consensus 365 ~ 365 (408)
T 4a11_B 365 L 365 (408)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.1e-29 Score=263.72 Aligned_cols=282 Identities=15% Similarity=0.222 Sum_probs=224.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
..+.|+||++ ++||+|. |++|+|||..++... .+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~ 141 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL 141 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence 4678999976 4777765 899999999884321 123
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
.+.+|...|++++|+|++ +|++|+.||+|++||+++++.+..+. |...+.++.+ ++.++++|+.|+.+++||...
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecc
Confidence 445788899999999997 99999999999999999999988885 8889998887 468999999999999999876
Q ss_pred Cc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 360 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 360 ~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
.. ...+..|...+..+.++|+++++++++.||.+++|+........... .....+...|.+++|+|.+..+++++
T Consensus 219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee---eeecccCCceeeeeeCCCcccEEEEE
Confidence 43 44578899999999999999999999999999999998765432211 11223457899999999887787765
Q ss_pred --ECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424 438 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 513 (645)
Q Consensus 438 --s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 513 (645)
+.|+.|++||+.+........ +...+.++.|+|+++.+++++ .||.|+|||+.+++... ..-.|.
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~----------~l~gH~ 364 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA----------ELKGHT 364 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE----------EECCCS
T ss_pred eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE----------EEcCCC
Confidence 479999999988655444443 456899999999999998875 79999999998763211 112356
Q ss_pred CcEEEEecCCCCccccccCCCCccccCcccccccc
Q 006424 514 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 548 (645)
Q Consensus 514 g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~ 548 (645)
+.+++++|+|+|.+|++.+.|+ .+++|+..+.
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~---tvriWdv~~~ 396 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADE---TLRLWRCFEL 396 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTT---EEEEECCSCS
T ss_pred CCEEEEEEcCCCCEEEEEecCC---eEEEEECCCC
Confidence 7899999999999999888774 4678887543
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-29 Score=265.74 Aligned_cols=241 Identities=21% Similarity=0.339 Sum_probs=203.2
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
|.+.|++++|+|++++|++|+.||.|++||+.+ .+
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~~ 167 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------QT 167 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------CC
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------Ce
Confidence 889999999999999999999999999999986 44
Q ss_pred CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC-CCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~-~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 356 (645)
.+..+.+|...|.+++|++ ..+++|+.||.|++||++ .+..+..+ .|...|.+++|+| ++++|++|+.|+.|++||
T Consensus 168 ~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEcc
Confidence 5677889999999999953 589999999999999998 45555555 5899999999999 999999999999999999
Q ss_pred CCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEe--cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 357 VCEKRVVD-WADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 357 ~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+++++... +..|...|.+++|+|++. ++++++ .||.|++||+.+...... +. +...+.+++|+|++ .
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~-~ 316 (401)
T 4aez_A 246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS-K 316 (401)
T ss_dssp TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-S
T ss_pred CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-C
Confidence 99877654 567899999999999775 555554 799999999987765332 21 13679999999998 6
Q ss_pred EEEEE--ECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 433 RIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 433 ~l~~~--s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
+++++ +.||.|++||+.. .........|...|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 77774 4899999999875 444444556889999999999999999999999999999988753
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5e-30 Score=271.55 Aligned_cols=258 Identities=21% Similarity=0.291 Sum_probs=210.7
Q ss_pred ccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+.+|.+.|++++|+|+ +.+||+|+.||.|++||+.+...... .
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~ 167 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------P 167 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------T
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------c
Confidence 35579999999999997 77999999999999999975211000 0
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeE-------EEEe-cCCCcEEEEEEeeCCCCEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYF 343 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~~p~~~~~l 343 (645)
.....++..+.+|...|.+++|+|++ +|++|+.||.|++||+.++.. ...+ .|...|.+++|+|.++.+|
T Consensus 168 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 00135567888999999999999874 899999999999999987322 2333 5888999999999778899
Q ss_pred EEEeCCCcEEEEeCCCC----cEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424 344 ISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 344 ~s~s~dg~i~vwd~~~~----~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 418 (645)
++++.||.|++||++++ ....+..|...|++++|+|++. ++++|+.||.|++||++........+.. |.
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------h~ 321 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------HK 321 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------CS
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------CC
Confidence 99999999999999976 3445668899999999999987 6889999999999999975544433332 34
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------ceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCc
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDC 483 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg 483 (645)
..|++++|+|++..++++++.|+.|++||+.. ....+....|...|.+++|+|+++ +|++++.||
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 78999999999867899999999999999875 233344455788999999999999 999999999
Q ss_pred cEEEEeCCCC
Q 006424 484 RVYVWNYDEL 493 (645)
Q Consensus 484 ~I~iwd~~~~ 493 (645)
.|+||++...
T Consensus 402 ~i~iw~~~~~ 411 (430)
T 2xyi_A 402 IMQVWQMAEN 411 (430)
T ss_dssp EEEEEEECHH
T ss_pred CEEEeEcccc
Confidence 9999999764
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2e-30 Score=272.09 Aligned_cols=255 Identities=18% Similarity=0.279 Sum_probs=212.1
Q ss_pred cccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 192 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++....
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------------------- 118 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------------------- 118 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence 3445789999999999999 89999999999999999998732110
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe--c-CCCcEEEEEEeeCCCCEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~--~-~~~~v~~l~~~p~~~~~l~s 345 (645)
....++..+.+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+ . |...|.+++|+| ++++|++
T Consensus 119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 193 (402)
T 2aq5_A 119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICT 193 (402)
T ss_dssp ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence 0125577888999999999999985 8999999999999999999998887 3 889999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCcEEEe--eccCCC-eEEEEEccCCCEEEEE---ecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 346 GSIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~--~~~~~~-v~~l~~sp~g~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
++.|+.|++||+++++.... ..|... +.++.|+|+++++++| +.|+.|++||+++........... +..
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~ 268 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSS 268 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCS
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCC
Confidence 99999999999999887664 466655 8999999999999999 789999999998766543333222 236
Q ss_pred CeEEEEEcCCCCcEEE-EEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 420 KITGIQFSRDESQRIM-ITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~-~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+.+++|+|++ .+++ +++.|+.|++||+... ...+..+.+...+.+++|+|++.++++ .++.+++|++.++
T Consensus 269 ~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 269 GVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp SCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 79999999998 5564 5668999999998743 445555557789999999999998875 5779999999865
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.6e-29 Score=267.38 Aligned_cols=275 Identities=19% Similarity=0.324 Sum_probs=223.2
Q ss_pred cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
...++.+|.+.|++++|+ +++|++|+.||+|++||+.+
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~---------------------------------------- 188 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET---------------------------------------- 188 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------------
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc----------------------------------------
Confidence 345677999999999997 56999999999999999987
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
++.+..+.+|...|.+++|++ +.+++|+.||+|++||+.+++.+..+. |...|.+++| +++++++|+.||
T Consensus 189 -----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg 259 (445)
T 2ovr_B 189 -----GECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDF 259 (445)
T ss_dssp -----TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTS
T ss_pred -----CcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCC
Confidence 344677889999999999963 579999999999999999999888774 8889999998 578999999999
Q ss_pred cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
.|++||+++++... +..|...|.+++| ++.++++|+.||.|++||+++...... +. .|...+.++.++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~----~~~~~v~~~~~~-- 328 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT---LT----GHQSLTSGMELK-- 328 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE---EC----CCCSCEEEEEEE--
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE---Ec----CCcccEEEEEEe--
Confidence 99999999887665 5678899999999 789999999999999999988765322 12 234678888775
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeec---CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS 506 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 506 (645)
+ .++++++.||.|++||+.+........ .|...|.+++|+ +++|++|+.||.|++||+.+++.......
T Consensus 329 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----- 400 (445)
T 2ovr_B 329 D-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT----- 400 (445)
T ss_dssp T-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE-----
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec-----
Confidence 3 589999999999999987544333332 277899999995 68999999999999999988742211100
Q ss_pred eeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
...-.+.+.+.+++|+|++..++..+.|+.
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 000135678999999999999998877764
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.5e-29 Score=265.49 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=215.5
Q ss_pred cEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 202 CIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 202 ~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
....++++|+.. ++++|+.||.|+||++...... ...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------------------------~~~~ 74 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------------------------DKNV 74 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------------------------CTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------------------------CCCC
Confidence 455688999876 4456889999999998652110 1345
Q ss_pred eeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCC-------eEEEEe-cCCCcEEEEEEeeCCC-CEEEEEeCC
Q 006424 281 QELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVF-DHHNYVTCVQFNPIDD-NYFISGSID 349 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~-------~~~~~~-~~~~~v~~l~~~p~~~-~~l~s~s~d 349 (645)
..+.+|.+.|++++|+| ++ +|++|+.||+|++||+.++ +++..+ .|...|.+++|+| ++ ++|++++.|
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~d 153 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCD 153 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETT
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCC
Confidence 56789999999999999 66 9999999999999999887 445555 4999999999999 65 799999999
Q ss_pred CcEEEEeCCCCcEEE-e--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 350 GKVRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 350 g~i~vwd~~~~~~~~-~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
+.|++||+++++... + ..|...|.+++|+|++++|++++.||.|++||+++..........+. ...+.++.|
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~ 228 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAVF 228 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEEE
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEEE
Confidence 999999999988765 4 56899999999999999999999999999999998764332111111 234899999
Q ss_pred cCCCCcEEEEE---ECCCeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEE-EeCCccEEEEeCCCCCcCCCcc
Q 006424 427 SRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 427 s~~g~~~l~~~---s~dg~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t-~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
+|++ .+++++ +.|+.|++||++.... ......+...+.+++|+|++++|++ |+.||.|++||+.++...
T Consensus 229 ~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~---- 303 (402)
T 2aq5_A 229 VSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF---- 303 (402)
T ss_dssp CSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----
T ss_pred cCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----
Confidence 9997 788888 7899999999875322 2222346778999999999999975 557999999999876321
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 531 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~ 531 (645)
......+.+.+.+..++|+|++..+++.
T Consensus 304 ---~~~l~~~~~~~~v~~~~~sp~~~~~~s~ 331 (402)
T 2aq5_A 304 ---LHYLSMFSSKESQRGMGYMPKRGLEVNK 331 (402)
T ss_dssp ---EEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred ---eEeecccccCCcccceEEecccccceec
Confidence 1122223345778899999999988753
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.5e-29 Score=265.35 Aligned_cols=244 Identities=17% Similarity=0.309 Sum_probs=203.6
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+.+|.+.|++++|+|+|++||+|+.||+|++||+.+
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~------------------------------------------- 178 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ------------------------------------------- 178 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------------
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------------------------
Confidence 3567889999999999999999999999999999987
Q ss_pred ccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
++.+..+.+|...+.++++++ ..|++|+.|+.+++||..... .+..+ .|...+.++.|+| ++.++++++.|+.+
T Consensus 179 --~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v 254 (420)
T 4gga_A 179 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV 254 (420)
T ss_dssp --TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccc
Confidence 455678889999999999863 489999999999999987643 34444 5889999999999 99999999999999
Q ss_pred EEEeCCCCc-----EEEeeccCCCeEEEEEccCCC-EEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 353 RIWGVCEKR-----VVDWADVRDVISAICYIPDGK-GFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 353 ~vwd~~~~~-----~~~~~~~~~~v~~l~~sp~g~-~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
++||...++ ......+...|.+++|+|.+. .++++ +.|+.|++||+.+...... + .. ...+.++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~--~~-----~~~v~~~ 326 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-V--DA-----HSQVCSI 326 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-E--EC-----SSCEEEE
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-e--cc-----ccceeee
Confidence 999998754 345677889999999999665 55543 5799999999998765332 2 21 2678999
Q ss_pred EEcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 425 QFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 425 ~~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.|+|++ ..+++++ .|+.|+|||..+.........|.+.|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus 327 ~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 327 LWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred eecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999998 5666554 68999999988665555555689999999999999999999999999999997653
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.3e-30 Score=262.80 Aligned_cols=291 Identities=13% Similarity=0.081 Sum_probs=223.6
Q ss_pred eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEe
Q 006424 283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWG 356 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd 356 (645)
..+|.+.|++++|+|++ +|++++.|+.|++||+.++. ......|...|.+++|+| +++ +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence 45799999999999987 89999999999999998877 555667999999999999 899 999999999999999
Q ss_pred C-CCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecC---------CceeeeEEeeccccccCCCCeEEE
Q 006424 357 V-CEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 357 ~-~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
+ .+++...+.. |...|.+++|+| ++.+++++.||.|++||++. ..... ...+...+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--------NTKVKNKIFTM 156 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--------SSSSCCCEEEE
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--------EEeeCCceEEE
Confidence 9 9998888888 999999999999 99999999999999999985 22211 11145789999
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCc-ce--eeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVD-VI--HKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~-~~--~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~ 500 (645)
+|+|++ +++++.|+.|++||++. .. .......+...+.+++|+| +++++++++.||.|++|+++........
T Consensus 157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~- 232 (342)
T 1yfq_A 157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS- 232 (342)
T ss_dssp EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC-
T ss_pred EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc-
Confidence 999884 99999999999999876 32 2333445788999999999 9999999999999999999765100000
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 580 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~ 580 (645)
. ... .+.. ..... .-..+...+.+++|+|+++++++++. ++.
T Consensus 233 -~-~~~--~~~~---------~~~~~------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~ 274 (342)
T 1yfq_A 233 -S-KRF--AFRC---------HRLNL------------------------KDTNLAYPVNSIEFSPRHKFLYTAGS-DGI 274 (342)
T ss_dssp -T-TCE--EEEC---------CCCCT------------------------TCCSSCCCEEEEEECTTTCCEEEEET-TSC
T ss_pred -c-cce--eeec---------ccccc------------------------cccccceeEEEEEEcCCCCEEEEecC-Cce
Confidence 0 000 0000 00000 00123445677788888888888887 899
Q ss_pred CCCCCCccCCCCCcCChhhhHhhhhhccC-CCCCccCCCCcceEEEEecCCCe-EeEEE
Q 006424 581 LPLWDVTIDSDGYCQDPQQQRLQQQCLNN-VDDVRAISATWGLVIVTAGCDGM-IKTFH 637 (645)
Q Consensus 581 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ivt~s~Dg~-Iriw~ 637 (645)
|++||+.+++ .......+ ...+..+. +||.+|++||.||+ .+.|.
T Consensus 275 i~vwd~~~~~-----------~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 275 ISCWNLQTRK-----------KIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEETTTTE-----------EEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEcCccHh-----------HhhhhhcccCCCceEec-CCCCeEEEEecCCccccccc
Confidence 9999998872 22223333 44444555 78999999999999 55544
No 101
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-30 Score=277.22 Aligned_cols=257 Identities=13% Similarity=0.101 Sum_probs=199.7
Q ss_pred cccccccCcEEEEEECCC------CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 194 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspd------g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
.++.+|.+.|++++|+|+ +.+||+|+.||+|++||+.++.......
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~---------------------------- 252 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF---------------------------- 252 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE----------------------------
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc----------------------------
Confidence 456788999999999997 5799999999999999997642110000
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEE--EEeeCCC-CE
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY 342 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l--~~~p~~~-~~ 342 (645)
.....+...+.+|...|++++|++++.|++|+.||+|++||++++. +...+ .|...|+++ .|+| ++ ++
T Consensus 253 ------~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~ 325 (524)
T 2j04_B 253 ------KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV 325 (524)
T ss_dssp ------ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred ------eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence 0012345678899999999999988899999999999999998764 33434 599999999 4666 76 89
Q ss_pred EEEEeCCCcEEEEeCCCCcEEE-eeccC--CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 343 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~-~~~~~--~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
|++|+.|++|++||+++++... +.+|. ..|.+++|+|+++.+++++.|++|++||++....... +. .|..
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~---l~----gH~~ 398 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP---LV----SRET 398 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---EE----ECSS
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---ee----cCCC
Confidence 9999999999999998866432 33443 3588999999999999999999999999988664322 12 2458
Q ss_pred CeEEEEEcCCCCcEEEEEECCCeEEEEECCc----c-e---------ee------------------------------E
Q 006424 420 KITGIQFSRDESQRIMITSEDSKLRILDGVD----V-I---------HK------------------------------F 455 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~-~---------~~------------------------------~ 455 (645)
.|++++|+|+| .+|++|+.|++|++||... . . .. .
T Consensus 399 ~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 399 TITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA 477 (524)
T ss_dssp CEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred ceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence 99999999998 7899999999999998421 0 0 00 0
Q ss_pred eecCCCCCeEEEEEecCCC---EEEEEeCCccEEEEeCCCC
Q 006424 456 KGLPKSGSQMSASFTTTGK---HIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 456 ~~~~~~~~i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~ 493 (645)
....|...|.+++|+|+++ .+|+|+.||.|+||++...
T Consensus 478 ~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 478 KIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 1123667889999999964 9999999999999998754
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.6e-29 Score=258.39 Aligned_cols=298 Identities=14% Similarity=0.135 Sum_probs=211.0
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC----eEEEEe-cCCCcEEEEEEeeC-CCCEEEEEeCCCcEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR 353 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~----~~~~~~-~~~~~v~~l~~~p~-~~~~l~s~s~dg~i~ 353 (645)
..+.+|.+.|++++|+|++ +|++|+.||.|++||+.++ +....+ .|...|.+++|+|. ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4567999999999999987 8999999999999999876 344444 48999999999984 389999999999999
Q ss_pred EEeCCCCc----------EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeE------Eeeccccc
Q 006424 354 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEK------VDFHDRKK 415 (645)
Q Consensus 354 vwd~~~~~----------~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~------~~~~~~~~ 415 (645)
+||++++. ...+..|...|.+++|+|+ ++++++++.||.|++||+++....... ........
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998752 4456789999999999999 999999999999999999876543210 00111122
Q ss_pred cCCCCeEEEEEcCC--CCcEEEEEECCCeEEEEECCcce--eeEeecCCCCCeEEEEEecCC----CEEEEEeCCccEEE
Q 006424 416 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 487 (645)
Q Consensus 416 ~~~~~i~~i~~s~~--g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~dg~I~i 487 (645)
.+...+.++.|+|+ ...++++++.|+.+.+|+..... .......|...|.+++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 45678999999997 23799999999999888865432 234445588999999999998 89999999999999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC-CCCccccCcccccc--ccCCccCCCCccccCccc
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC-SSSLRDCSQKWDNL--ETAPWIRDSERFSLGSWF 564 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~-~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~f 564 (645)
||+..+.......... ........++....+.... ..........|... ........|...+++++|
T Consensus 245 wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 245 FKITEKLSPLASEESL----------TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EEEEECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EeCCCCcCccccCCcc----------cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 9998764322211110 0111111122222111111 11111122233321 122245567788999999
Q ss_pred cCCCCCCcCCCCCCCcCCCCCCccC
Q 006424 565 SNDGPCRGSATWPAEKLPLWDVTID 589 (645)
Q Consensus 565 s~dg~~l~s~s~~d~~i~iWd~~~~ 589 (645)
+|+++++++++. |+.|++|++.++
T Consensus 315 s~~~~~l~s~~~-dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 NLTGTILSSAGD-DGKVRLWKATYS 338 (351)
T ss_dssp CSSSCCEEEEET-TSCEEEEEECTT
T ss_pred cCCCCEEEEecC-CCcEEEEecCcC
Confidence 999999999998 999999999876
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.4e-29 Score=256.55 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=192.4
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE--EEEe-cCCCcEEEEEEee-CCCCEEEEEeCCCcEEEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~--~~~~-~~~~~v~~l~~~p-~~~~~l~s~s~dg~i~vw 355 (645)
..+.+|.+.|++++|+|++ +|++|+.|++|++||+.++.. +..+ +|...|.+++|+| .++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3456899999999999987 899999999999999988753 4444 5999999999975 247899999999999999
Q ss_pred eCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 356 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 356 d~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
|++++. ...+.+|...|.+++|+|+ +.+|++|+.||.|++||++...... .......|...+.+++|+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence 998863 3446789999999999998 7899999999999999998653211 111223456789999999973
Q ss_pred ----------------CcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCC----CEEEEEeCCccEEE
Q 006424 431 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 487 (645)
Q Consensus 431 ----------------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~dg~I~i 487 (645)
..+|++++.|+.|++||.... ........|...|.+++|+|++ ++|++|+.||+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 158999999999999998632 2223334588999999999987 89999999999999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
|++.+...... .... ...+.+.+.+++|+|++..|++.+.|+ .+++|+.
T Consensus 243 w~~~~~~~~~~-----~~~~-~~~~~~~v~~v~~sp~g~~las~~~D~---~v~lw~~ 291 (316)
T 3bg1_A 243 WTCDDASSNTW-----SPKL-LHKFNDVVWHVSWSITANILAVSGGDN---KVTLWKE 291 (316)
T ss_dssp EECSSTTCCCC-----BCCE-EEECSSCEEEEEECTTTCCEEEEESSS---CEEEEEE
T ss_pred EEccCccccch-----hhhh-hhcCCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEE
Confidence 99976321000 0011 112467789999999999999887764 4567765
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-29 Score=257.74 Aligned_cols=253 Identities=17% Similarity=0.197 Sum_probs=200.5
Q ss_pred CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEec-CCCcEEEEEEeeCC--CCEEEEEeCCCcE
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKV 352 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~~-~~~~v~~l~~~p~~--~~~l~s~s~dg~i 352 (645)
++..+.+|.+.|++++|+|++ +|++|+.||.|++||+. +++.+..+. |...|++++|+| + +++|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence 456788999999999999997 89999999999999998 555666664 899999999987 5 8999999999999
Q ss_pred EEEeCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 353 RIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 353 ~vwd~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
++||+.+++ ......|...|.+++|+|+ ++++++++.||.|++||++........ ... .|...|.+++|+
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~----~~~~~v~~~~~~ 156 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IID----AHAIGVNSASWA 156 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEE----CCTTCEEEEEEC
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Eec----CCCCceEEEEEc
Confidence 999999885 3446678999999999999 999999999999999999877443221 122 235789999999
Q ss_pred C-------------CCCcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecC---CCEEEEEeCCccEEE
Q 006424 428 R-------------DESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV 487 (645)
Q Consensus 428 ~-------------~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~---~~~l~t~s~dg~I~i 487 (645)
| ++ .++++++.|+.|++||++... .......|...|.+++|+|+ +++|++++.||.|++
T Consensus 157 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 157 PATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 9 45 899999999999999976322 22233458899999999999 899999999999999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~ 546 (645)
||+.++........ .....+.+.+..++|+|++..|++.+.++ .+.+|+..
T Consensus 236 wd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~ 286 (379)
T 3jrp_A 236 WTQDNEQGPWKKTL-----LKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKEN 286 (379)
T ss_dssp EEESSTTSCCEEEE-----SSSSCCSSCEEEEEECSSSCCEEEEESSS---SEEEEEEE
T ss_pred EeCCCCCccceeee-----eccccCCCcEEEEEEcCCCCEEEEecCCC---cEEEEeCC
Confidence 99987632211100 00112456788999999999988777653 35667653
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.6e-29 Score=256.30 Aligned_cols=244 Identities=11% Similarity=0.109 Sum_probs=178.3
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
.+++++|.+.|++++|+|||++|++|+.|| +++|++.++..
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-------------------------------------- 52 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-------------------------------------- 52 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE--------------------------------------
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce--------------------------------------
Confidence 445688999999999999999999999886 78999876211
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-e-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
.... +...+..+++.+++ . +++++.|++|++||+.+++++..+.+...|.+++|++ + .++++. |+
T Consensus 53 -------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~~-~~ 119 (355)
T 3vu4_A 53 -------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVSY-GD 119 (355)
T ss_dssp -------EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEEE-TT
T ss_pred -------eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEEE-cC
Confidence 1111 12246777777664 4 4678888999999999999999999999999999976 3 455444 78
Q ss_pred cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCCEEEE--EecCCeEEEEEecCCceeee--------EEee-ccccccCC
Q 006424 351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSG 418 (645)
Q Consensus 351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~--g~~dg~i~iwd~~~~~~~~~--------~~~~-~~~~~~~~ 418 (645)
.|++||+.++ +.+..... ....+++++ .++++ |+.+|.|++||+.+...... .... ......|.
T Consensus 120 ~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~ 195 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT 195 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred EEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence 9999999887 44332222 444566677 56666 58899999999987541100 0000 11123456
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCe-EEEEECCcceeeEeec-C-CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
..|++++|+|+| .+|++++.|++ |++||+.+........ . |...|.+++|+|++++|++++.|++|++||+...
T Consensus 196 ~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 196 NPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 899999999998 89999999998 9999988554444433 2 8899999999999999999999999999999876
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=8.8e-28 Score=242.82 Aligned_cols=242 Identities=17% Similarity=0.297 Sum_probs=199.7
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+.+|...|++++|+|++++|++|+.||+|++||+.+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-------------------------------------------- 98 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------- 98 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------------------------
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--------------------------------------------
Confidence 567899999999999999999999999999999987
Q ss_pred cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE-EEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-LNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~-~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
++.+..+.+|...+.++.+.+ ..+++++.++.+++|+...+.. +.. ..|...+.++.+.+ +++++++++.|+.|+
T Consensus 99 -~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN 175 (318)
T ss_dssp -TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred -ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCccee
Confidence 455677889999998877653 4899999999999999876543 333 35889999999999 999999999999999
Q ss_pred EEeCCCCc-----EEEeeccCCCeEEEEEccCCCEE---EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 354 IWGVCEKR-----VVDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 354 vwd~~~~~-----~~~~~~~~~~v~~l~~sp~g~~l---~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+||+++++ ......+...|.++.++|++..+ ++++.++.|++||......... .. +...+..+.
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~-----~~~~v~~~~ 247 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VD-----AHSQVCSIL 247 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EE-----CSSCEEEEE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---cc-----ceeeeeeee
Confidence 99998765 23456678889999999976643 3566789999999987665332 11 136799999
Q ss_pred EcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 426 FSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 426 ~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|+|++ ..+++++ .|+.|++||+.+.........|.+.|++++|+|++++|+|||.||+|+|||+.+.
T Consensus 248 ~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 248 WSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ecccc-cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99997 5555543 7999999998865555555568999999999999999999999999999999765
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-28 Score=256.18 Aligned_cols=310 Identities=10% Similarity=-0.017 Sum_probs=211.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---eeeeEecCCCCcccC----CCCceEEecccCC--Cccee----e
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN----AKEGKIKFGKKKS--SHVPV----V 267 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~----~ 267 (645)
.++.+++|+|+|++|+++ .++.|++||+.++. ............... ............. ..... .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976665 57789999999887 333222111100000 0000000000000 00000 0
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecC--CCeEEEEe---cCCCcEEEEEEeeCCC
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPIDD 340 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~--~~~~~~~~---~~~~~v~~l~~~p~~~ 340 (645)
........ ..+.....+|.+.|++++|+|++ +| ++++.||.|++||+. +++.+..+ .+...|.+++|+| ++
T Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 161 (450)
T 2vdu_B 84 IKRTAAKV-PSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred ccccCccc-cCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence 00000000 01122345788899999999998 64 899999999999999 88877776 4778999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEE-----EeeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 412 (645)
++|++|+.||.|++|++.++... .+.+|...|++++|+|+ +++|++|+.|+.|++||+.+.......
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----- 236 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----- 236 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-----
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-----
Confidence 99999999999999999876644 46778999999999999 999999999999999999877643221
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEeec-----------------------CCCCCeEEE
Q 006424 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGL-----------------------PKSGSQMSA 467 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~-----------------------~~~~~i~~v 467 (645)
...|...|.+++|+ ++ .+|++++.|+.|++||+.... ..+... .....|.++
T Consensus 237 -~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 237 -LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp -CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred -ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 12245889999999 86 899999999999999987433 333321 234578999
Q ss_pred EEecCCCEEEEEe-CCccEEEEeC--CCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424 468 SFTTTGKHIISIG-DDCRVYVWNY--DELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 468 ~~sp~~~~l~t~s-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~ 529 (645)
+|+|++++|++++ .|+.|++|++ ..+.. ......+...+.+..++|+|++.+++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--------l~~~~~~~~~~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD--------LALKQIITFPYNVISLSAHNDEFQVT 370 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTC--------EEEEEEEECSSCEEEEEEETTEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCc--------eeeccEeccCCceEEEEecCCcEEEE
Confidence 9999999999999 8999999999 32210 01111222236788899999654444
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=5.1e-28 Score=257.20 Aligned_cols=291 Identities=14% Similarity=0.194 Sum_probs=204.3
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-----------EEEEe-cCC------------CcEEEEEEeeCC
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----------CLNVF-DHH------------NYVTCVQFNPID 339 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-----------~~~~~-~~~------------~~v~~l~~~p~~ 339 (645)
.|.+.|++++|+|++ +|++|+.||.|++||+.+++ ....+ .|. ..|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 368899999999997 99999999999999998776 34444 476 7899999999 7
Q ss_pred C--CEEEEEeCCCcEEEEeCCCCcEE-----------------------------------------EeeccCCCeEEEE
Q 006424 340 D--NYFISGSIDGKVRIWGVCEKRVV-----------------------------------------DWADVRDVISAIC 376 (645)
Q Consensus 340 ~--~~l~s~s~dg~i~vwd~~~~~~~-----------------------------------------~~~~~~~~v~~l~ 376 (645)
+ .+|++++.|+.|++||+.++... ...+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999998764431 1357899999999
Q ss_pred EccCCCEEEEEecCCeEEEEEecCCceeeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---
Q 006424 377 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--- 452 (645)
Q Consensus 377 ~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--- 452 (645)
|+|++++|++| .||.|++||++........+... .....|...|.+++|+|++..++++++.||.|++||++...
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999999 79999999998543333222111 12335678999999999976799999999999999987533
Q ss_pred ---eeEeecCCCC------------CeEEEEEecCCCEEEEEeCCccEEEEeCCC-CCcCCCcccCCc-cee-eeeecCC
Q 006424 453 ---HKFKGLPKSG------------SQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSV-RSC-EHFFSEG 514 (645)
Q Consensus 453 ---~~~~~~~~~~------------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~-~~~-~~~~~~g 514 (645)
..+.. +.. .|.+++|+|++++|++++. |.|++||+.. +........... ... .......
T Consensus 264 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 33333 443 8999999999999999998 9999999986 432221111100 000 0000000
Q ss_pred c---EEEEecCCCCccccccCCCCccccCccccccccCCc----------------------------------cCCCCc
Q 006424 515 V---SVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW----------------------------------IRDSER 557 (645)
Q Consensus 515 ~---~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~----------------------------------~~~~~~ 557 (645)
. +..++|+|++.+|++.+.|+ .+.+|+....... ......
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK 417 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred ccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence 0 12366777777666555543 2445544222110 112334
Q ss_pred cccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424 558 FSLGSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 558 ~~~~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
.+..++|+|++.++++++. ..+++|.
T Consensus 418 ~i~~~~~~p~~~~la~~~~--~~~~~~~ 443 (447)
T 3dw8_B 418 KILHTAWHPKENIIAVATT--NNLYIFQ 443 (447)
T ss_dssp CCCEEEECSSSSEEEEECS--SCEEEEE
T ss_pred ceeEEEECCCCCEEEEEec--ceeeeec
Confidence 5778999999999988775 3577775
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-28 Score=250.07 Aligned_cols=234 Identities=13% Similarity=0.142 Sum_probs=179.8
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284 (645)
Q Consensus 205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (645)
...+.+++.+|++|+.||+|++||+.++ +.+..+.
T Consensus 41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~---------------------------------------------~~~~~~~ 75 (343)
T 3lrv_A 41 NKSMYYDKWVCMCRCEDGALHFTQLKDS---------------------------------------------KTITTIT 75 (343)
T ss_dssp CSSSSEEEEEEEEEEETTEEEEEEESSS---------------------------------------------SCEEEEE
T ss_pred hhhhcCCCCEEEEECCCCcEEEEECCCC---------------------------------------------cEEEEEe
Confidence 3345568889999999999999999873 2333333
Q ss_pred cCccCeEEEEEcCCCeEEEEeCCCcEEEEecC---------CCeEEEEe--cCCCcEEEEEEee-CCCCEEEEEeCCCcE
Q 006424 285 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDGKV 352 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~---------~~~~~~~~--~~~~~v~~l~~~p-~~~~~l~s~s~dg~i 352 (645)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+ .|...|.+++|+| .+++++++++.||+|
T Consensus 76 --~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 151 (343)
T 3lrv_A 76 --TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI 151 (343)
T ss_dssp --EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred --cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence 456777788887 9999999999999665 45544444 4667899999998 257899999999999
Q ss_pred EEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 353 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 353 ~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
++||+++++..... .+...+++++|+|+|.++++|+.||.|++||+++.......+.. .|...|++++|+|+|
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g 226 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNG 226 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTS
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCC
Confidence 99999998876543 45567999999999999999999999999999987754222221 245899999999998
Q ss_pred CcEEEEEECCCeEEEEECCcceee--Eee-cCCCCCe--EEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHK--FKG-LPKSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDELC 494 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~--~~~-~~~~~~i--~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~ 494 (645)
.+|++++ |+.|++||++..... +.. ..+...+ .+++|+|++++|++++. |+.|++|++....
T Consensus 227 -~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 227 -YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 7899999 559999998754322 211 0122223 46999999999999998 9999999997653
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=9.6e-28 Score=254.46 Aligned_cols=239 Identities=23% Similarity=0.447 Sum_probs=196.9
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
.....+.+|.+.|++++| ++++|++|+.||.|++||+.+
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--------------------------------------- 202 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--------------------------------------- 202 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS---------------------------------------
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC---------------------------------------
Confidence 355678899999999999 788999999999999999987
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEE---EEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~---~~~-~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
++.+..+.+|...|.+++|++ +.+++|+.||.|++||+.++... ..+ .|...|.+++| +++++++|
T Consensus 203 ------~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~ 272 (435)
T 1p22_A 203 ------GEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSA 272 (435)
T ss_dssp ------CCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEE
T ss_pred ------CcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEE
Confidence 445677889999999999974 59999999999999999887654 333 58899999999 57899999
Q ss_pred eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.||.|++||+++++... +..|...|.++.+ +++++++|+.||.|++||+++...... +. .|...|.+++
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~----~h~~~v~~~~ 343 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---LE----GHEELVRCIR 343 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE---EC----CCSSCEEEEE
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE---Ee----CCcCcEEEEE
Confidence 999999999999887665 6678899999998 478999999999999999998764322 22 2457899999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcce---------eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
| ++ .++++|+.||.|++||+.... .......|.+.|.+++| ++.+|++|+.||.|++||+.+..
T Consensus 344 ~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 344 F--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp C--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred e--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 9 44 689999999999999975322 33334458889999999 78899999999999999998764
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=257.53 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=199.2
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+++|.+.|++++|+|+| .++.+.+|+.+.
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~------------------------------------------- 76 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ------------------------------------------- 76 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-------------------------------------------
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCC-------------------------------------------
Confidence 346899999999999998 455555554332
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEEEEEeeCCCCEEEEEeC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGSI 348 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~l~~~p~~~~~l~s~s~ 348 (645)
.....+ +|...|.+++|+|+| .|++++.||.|++||... ++..+.|.. .+.+++|+| ++++|++|+.
T Consensus 77 ---~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~ 149 (588)
T 2j04_A 77 ---NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNE 149 (588)
T ss_dssp ---SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEET
T ss_pred ---ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcC
Confidence 111222 458899999999998 899999999999999644 666556444 499999999 9999999999
Q ss_pred CCcEEEEeCCCCcE--------EEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 349 DGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 349 dg~i~vwd~~~~~~--------~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
||+|++||+.++.+ ..+ .+|...|.+++|+|+| +++++.|+.+++||+.+.........+. ..
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~---~~ 224 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ---NA 224 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE---CC
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec---cc
Confidence 99999999998752 333 5677899999999999 8889999999999998776421000111 12
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEE--ecCCCEEEEEeCCccEEEEeCCCC
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~--sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|...|.+++|+ | ..+++++ ++.|++||...... .+. ..|...+..+.| +|++..|+++++||+ ++|..+.-
T Consensus 225 h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~ 298 (588)
T 2j04_A 225 SRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDEL 298 (588)
T ss_dssp CSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSE
T ss_pred ccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccE
Confidence 34789999999 4 6888887 69999999886555 444 258999999999 999999999999999 99998521
Q ss_pred Cc----C-----------CCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 494 CF----P-----------SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 494 ~~----~-----------~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
.. . +...... ...+..+..+.+++++|||..++....
T Consensus 299 ~~spd~~l~a~~d~~v~lW~~~g~~---l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 299 HVTADNIIAPYLEKKFKKWSTIWNE---FNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEECCCSSHHHHHHHHHHTTTTTTS---SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCceEEEEcCCEEEEEECCCCc---eeeeccceEEEEEEECCCCCEEEEEEe
Confidence 10 0 0000000 111222334788999999988885544
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=245.16 Aligned_cols=295 Identities=12% Similarity=0.134 Sum_probs=225.1
Q ss_pred CCCceeeccCccCeEEEEEcCC---C-eEEEEeCCCcEEEEecCC-CeEE-EEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 277 ESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGC-NQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~---~-~l~s~s~dg~I~iwd~~~-~~~~-~~~-~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
...+..+.+|.+.|++++|+|+ + +|++|+.||.|++||+.+ +..+ ..+ .|...|.+++|+| ++++|++++.|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 107 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCD 107 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCC
Confidence 4566778899999999999998 4 899999999999999987 5554 444 5999999999999 99999999999
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEE--ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICY--IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s 427 (645)
|.|++||+++++......|...|.+++| +|+++++++++.||.|++||+++..... .+..+ ..+.++.+.
T Consensus 108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-------~~~~~~~~~ 179 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-VLQLP-------ERCYCADVI 179 (368)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE-EEECS-------SCEEEEEEE
T ss_pred CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE-EEecC-------CCceEEEec
Confidence 9999999999999999999999999999 8999999999999999999998776432 22221 456777776
Q ss_pred CCCCcEEEEEECCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCE----EEEEeCCccEEEEeCCCCCcCC----
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKH----IISIGDDCRVYVWNYDELCFPS---- 497 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~----l~t~s~dg~I~iwd~~~~~~~~---- 497 (645)
++ .+++++.++.+++|+.......+.. ......+..+.+.++... +++++.||.|++||++......
T Consensus 180 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 180 YP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp TT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred CC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 54 7888999999999998754433332 224456677777766655 9999999999999998763200
Q ss_pred -CcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccC--CccCCCCccccCccccCCCCCCcCC
Q 006424 498 -SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA--PWIRDSERFSLGSWFSNDGPCRGSA 574 (645)
Q Consensus 498 -~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~fs~dg~~l~s~ 574 (645)
..+...........+...+.+++|+|++.+|++.+.|+. +.+|+..... .....+...+.+++|+|||++++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR---FSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC---EEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCe---EEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 000000000001112236889999999999998877643 6678775433 2556778889999999999999998
Q ss_pred CCCCCcCCCCCCc
Q 006424 575 TWPAEKLPLWDVT 587 (645)
Q Consensus 575 s~~d~~i~iWd~~ 587 (645)
+. ++..+.|++-
T Consensus 334 s~-d~~~~~~~~~ 345 (368)
T 3mmy_A 334 SS-YDWSKGHEFY 345 (368)
T ss_dssp EC-CCSTTCGGGC
T ss_pred ec-cccccccccc
Confidence 76 6666666544
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.7e-28 Score=252.45 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=175.2
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
...|.+.+....+++++.+|++|+.|++|+|||+.++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------------------------------------- 125 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT--------------------------------------- 125 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEE---------------------------------------
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce---------------------------------------
Confidence 34566667777778888999999999999999998743221
Q ss_pred cCCCceeeccCccCeEEEEEcC--------CC-eEEEEeCCCcEEEEecCCCeEEE-EecCCCcEEEEEEeeCCCCEEEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~--------~~-~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s 345 (645)
...+..+.||.+.|++++|+| ++ +|+||+.|++|+|||+.++.++. .+.|...|.+++|+|.+.++|++
T Consensus 126 -~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 126 -QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV 204 (393)
T ss_dssp -EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred -eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe
Confidence 122445789999999999986 55 89999999999999998776554 55799999999999944468999
Q ss_pred EeCCCcEEEEeCCCCcEEE--------------------------eeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEe
Q 006424 346 GSIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~--------------------------~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~ 398 (645)
|+.|++|++||+++++... ..+|...+.++.|+ |+++.+++++.|+.+++||+
T Consensus 205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 9999999999998765321 23566778899986 79999999999999999998
Q ss_pred cCCceeeeEEeecc-----------ccccCCCCeEEEEEcC-CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEE
Q 006424 399 SGNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS 466 (645)
Q Consensus 399 ~~~~~~~~~~~~~~-----------~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~ 466 (645)
.............. .............|+| .+..++++|+.||.|++||............|..+|.+
T Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s 364 (393)
T 4gq1_A 285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD 364 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence 76543221100000 0000011222233444 33356778889999999998755444444447789999
Q ss_pred EEEecCCCEEEEEeCCccEEEEeC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
++|+|||++||+++++| +.+|++
T Consensus 365 vafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 365 FCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEcCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999998776 555554
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.1e-26 Score=239.04 Aligned_cols=251 Identities=10% Similarity=0.072 Sum_probs=196.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424 213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 292 (645)
Q Consensus 213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 292 (645)
.++++++.|+.|++||+.++ +.+..+.+|. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~ 36 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG 36 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence 46888999999999999873 3345566554 5899
Q ss_pred EEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCcEEEeeccC
Q 006424 293 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR 369 (645)
Q Consensus 293 l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~ 369 (645)
++|+|++ ++ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++++ +++.++.|++||+.+++......+.
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 115 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence 9999997 55 677799999999999999999988777999999999 888775 4556799999999999988877777
Q ss_pred CCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424 370 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 448 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~ 448 (645)
..+.+++|+|+++.+ ++++.++.|++||+.+..... .+.. ...+.+++|+|++..++++++.++.|++||+
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 889999999999977 677789999999998775432 2221 2467999999998444477788999999998
Q ss_pred CcceeeEeecCCCCCeEEEEEecCCCEEEEEe---CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC
Q 006424 449 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 525 (645)
Q Consensus 449 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~ 525 (645)
......... .+...+.+++|+|++++|++++ .++.|++||+.+++.. ..+.....+..++|+|++
T Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-----------~~~~~~~~~~~~~~s~dg 255 (391)
T 1l0q_A 188 VTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----------ARIPVGPDPAGIAVTPDG 255 (391)
T ss_dssp TTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----------EEEECCSSEEEEEECTTS
T ss_pred CCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----------EEEecCCCccEEEEccCC
Confidence 765433332 2456789999999999999988 6899999999876321 112222335677888888
Q ss_pred ccccc
Q 006424 526 TEQKS 530 (645)
Q Consensus 526 ~~l~~ 530 (645)
..++.
T Consensus 256 ~~l~~ 260 (391)
T 1l0q_A 256 KKVYV 260 (391)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77753
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.8e-26 Score=244.21 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=210.5
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+..+ ..+.+++|+|++.++++++.|+.|++||+.++....
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------------------------------- 158 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR-------------------------------------- 158 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------------------------------------
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------------------------------------
Confidence 34444 346699999988888888899999999998743221
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE-EEeCCCc
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDGK 351 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~-s~s~dg~ 351 (645)
......+.+|...|.+++|++++ .+++++.|+.|++||+++++.+..+. |...+.+++|+| +++.++ +++.|+.
T Consensus 159 --~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 235 (433)
T 3bws_A 159 --LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISED 235 (433)
T ss_dssp --ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred --ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCc
Confidence 01112456899999999999887 78899999999999999998888775 788999999999 888775 5557999
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe--------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
|++||+++++..........+.+++|+|+|+++++++ .||.|++||+.+...... ... ...+.+
T Consensus 236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~~ 307 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKRH 307 (433)
T ss_dssp EEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEEE
T ss_pred EEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcce
Confidence 9999999998887777777899999999999999988 488999999987654322 211 246889
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC---------------CccEEEE
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYVW 488 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---------------dg~I~iw 488 (645)
++|+|++..++++++.|+.|++||.......... .+...+.+++|+|++++|++++. ||.|++|
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 9999998556777799999999998754433332 25678999999999999988876 5799999
Q ss_pred eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424 489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 531 (645)
Q Consensus 489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~ 531 (645)
|+.+++... .+.....+..++|+|++..|+..
T Consensus 387 d~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 387 DTTTDTVKE-----------FWEAGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp ETTTTEEEE-----------EEECSSSEEEEEECTTSCEEEEE
T ss_pred ECCCCcEEE-----------EecCCCCCceEEEcCCCCEEEEE
Confidence 998763111 12223345666666666666543
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-26 Score=263.34 Aligned_cols=251 Identities=17% Similarity=0.208 Sum_probs=197.6
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEe-cCCCcEEEEEEeeCC--CCEEEEEeCCCcEEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVF-DHHNYVTCVQFNPID--DNYFISGSIDGKVRI 354 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~-~~~~~v~~l~~~p~~--~~~l~s~s~dg~i~v 354 (645)
..+.+|.+.|++++|+|++ +|++|+.||+|++||+. +++.+..+ .|...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 4678999999999999987 89999999999999998 44556666 4999999999998 6 899999999999999
Q ss_pred EeCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 355 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 355 wd~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
||+.+++ ......|...|++++|+|+ ++.+++|+.||.|++||++......... .. .|...|.++.|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~----~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-ID----AHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-EE----CCSSCEEEEEECCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-ee----cCCCceEEEEecCc
Confidence 9999875 4456779999999999999 9999999999999999998774322211 12 23578999999994
Q ss_pred -------------CCcEEEEEECCCeEEEEECCcc----eeeEeecCCCCCeEEEEEecC---CCEEEEEeCCccEEEEe
Q 006424 430 -------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWN 489 (645)
Q Consensus 430 -------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~i~~v~~sp~---~~~l~t~s~dg~I~iwd 489 (645)
+ .++++++.||.|++||++.. ........|...|.+++|+|+ +++|++|+.||.|++||
T Consensus 157 ~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 157 TIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp C---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 79999999999999997643 222334558899999999999 99999999999999999
Q ss_pred CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424 490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546 (645)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~ 546 (645)
+.++......... ....+.+.+.+++|+|++..+++.+.|+ .+.+|+..
T Consensus 236 ~~~~~~~~~~~~~-----~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vwd~~ 284 (753)
T 3jro_A 236 QDNEQGPWKKTLL-----KEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKEN 284 (753)
T ss_dssp ESSSSSCCBCCBS-----SSSCCSSCCCCEEECTTTCCEEEECSSS---CEECCBCC
T ss_pred CCCCCCcceeEEe-----ccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEEecC
Confidence 9886422211111 0112355677889999999988877764 35677764
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.6e-26 Score=244.53 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=168.9
Q ss_pred eeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCC----------CeEEEEe-cCCCcEEEEEEeeCCCC-EEEEE
Q 006424 281 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG 346 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~----------~~~~~~~-~~~~~v~~l~~~p~~~~-~l~s~ 346 (645)
....+|.+.|++++|+|+ + +|++++.||.|++||+.+ ...+..+ .|...|.+++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 445679999999999997 4 899999999999999976 4555555 5889999999999 666 99999
Q ss_pred eCCCcEEEEeCCCCc--------EEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCc--eeeeEEeeccccc
Q 006424 347 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND--LKLEKVDFHDRKK 415 (645)
Q Consensus 347 s~dg~i~vwd~~~~~--------~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~ 415 (645)
+.||.|++||+..+. ...+..|...|.+++|+| ++.+|++++.||.|++||++... .....+.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~------ 274 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD------ 274 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee------
Confidence 999999999998732 234568899999999999 67899999999999999999763 2222221
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~ 493 (645)
.|...|++++|+|++..++++++.||.|++||++.. ........|...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 235789999999998668999999999999998752 22223334888999999999985 7999999999999999764
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.3e-26 Score=240.64 Aligned_cols=248 Identities=13% Similarity=0.065 Sum_probs=193.2
Q ss_pred ccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 195 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
...+|.+.|++++|+|+|++| ++|+.||.|++||+. +
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---------------------------------------- 136 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS---------------------------------------- 136 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS----------------------------------------
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC----------------------------------------
Confidence 456799999999999999996 899999999999998 4
Q ss_pred ceeccCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE----Ee-cCCCcEEEEEEeeCC---C
Q 006424 272 VFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID---D 340 (645)
Q Consensus 272 ~~~~~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~----~~-~~~~~v~~l~~~p~~---~ 340 (645)
+..+..+. .|...|.+++|+|++ +|++|+.||.|++|++.+++... .+ .|...|++++|+| + +
T Consensus 137 -----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~ 210 (450)
T 2vdu_B 137 -----KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGH 210 (450)
T ss_dssp -----SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSC
T ss_pred -----CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCC
Confidence 23344444 577899999999997 89999999999999998876553 33 5889999999999 8 8
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-----
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR----- 413 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~----- 413 (645)
++|++|+.|+.|++||++++.... ..+|...|.+++|+ ++++|++++.|+.|++||+.+...... +.....
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~ 288 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYL 288 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGC
T ss_pred cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhh
Confidence 899999999999999999877654 45789999999999 999999999999999999998765332 221110
Q ss_pred --------------cccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEEC--Ccc---eeeEeecCCCCCeEEEEEecCC
Q 006424 414 --------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 414 --------------~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
.......+.++.|+|++ .++++++ .|+.|++|++ ... ........+ ..+.+++|+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 00224578999999997 7888888 8999999998 322 222222224 789999999964
Q ss_pred CEEEEEeC------CccEEEEeCCC
Q 006424 474 KHIISIGD------DCRVYVWNYDE 492 (645)
Q Consensus 474 ~~l~t~s~------dg~I~iwd~~~ 492 (645)
.++++++. +..|.+|.++.
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 33433332 45588887654
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=6.5e-26 Score=233.39 Aligned_cols=237 Identities=11% Similarity=0.123 Sum_probs=167.5
Q ss_pred CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCcEEE
Q 006424 277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRI 354 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~dg~i~v 354 (645)
..++..+.+|...|++++|+|++ +|++|+.+ .+++||+.+++......+. .+..+++.+ +++.+ ++++.|++|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEE
Confidence 34456678899999999999998 66666655 5889999988776655443 477888888 66666 56778899999
Q ss_pred EeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 355 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 355 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
||+.+++.+....+...|.+++|+++. ++++ .++.|++||+.+.......+.. +...+++++ . ++
T Consensus 86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~-~--~l 150 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------FGGVCEFSN-G--LL 150 (355)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---------EEEEEEEET-T--EE
T ss_pred EECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---------CCceEEEEc-c--EE
Confidence 999999888877788899999998764 4443 4889999999877222221111 233455666 2 44
Q ss_pred EE--EECCCeEEEEECCcce----------------eeEeecCCCCCeEEEEEecCCCEEEEEeCCcc-EEEEeCCCCCc
Q 006424 435 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCF 495 (645)
Q Consensus 435 ~~--~s~dg~I~iwd~~~~~----------------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~-I~iwd~~~~~~ 495 (645)
++ |+.||.|++||+.... .......|...|.+++|+|+|++|++|+.||+ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 44 6889999999987532 02333458999999999999999999999998 99999987632
Q ss_pred CCCcccCCcceeeeee---cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 496 PSSKQKNSVRSCEHFF---SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 496 ~~~~~~~~~~~~~~~~---~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
. ..+. +.+.+..++|+|++.+|++.+.| ..+++|+.
T Consensus 231 ~-----------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~ 269 (355)
T 3vu4_A 231 V-----------REFRRGLDRADVVDMKWSTDGSKLAVVSDK---WTLHVFEI 269 (355)
T ss_dssp E-----------EEEECTTCCSCEEEEEECTTSCEEEEEETT---CEEEEEES
T ss_pred E-----------EEEEcCCCCCcEEEEEECCCCCEEEEEECC---CEEEEEEc
Confidence 1 1122 45677888888888888876665 33556665
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.9e-26 Score=240.92 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=164.3
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-----e-cCCCcEEEEEEee-------CCCCEEEEEeCCC
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F-DHHNYVTCVQFNP-------IDDNYFISGSIDG 350 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-----~-~~~~~v~~l~~~p-------~~~~~l~s~s~dg 350 (645)
.|...+....+.+++ +|++++.|++|++||.++++.... + +|.+.|++++|+| .++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 455555545555555 799999999999999998876542 2 4999999999987 2678999999999
Q ss_pred cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeec-----------------
Q 006424 351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFH----------------- 411 (645)
Q Consensus 351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----------------- 411 (645)
+|++||++++ .......|...+.+++|+|++. +|++|+.||.|++||+++...........
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9999999765 4566788999999999999875 89999999999999998765432211000
Q ss_pred -cccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCC------------------CeEEEEEec
Q 006424 412 -DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG------------------SQMSASFTT 471 (645)
Q Consensus 412 -~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~------------------~i~~v~~sp 471 (645)
.....|...+.++.|+ +++ ..+++++.|+.+++||+...........+.. ......|+|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 0112355778899987 676 8999999999999999753221111111211 222233444
Q ss_pred --CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424 472 --TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 472 --~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
++.++++|+.||+|++||+.++.... ....+.+.+.+++|+|||.+|+..+.+++
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----------~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNS----------IPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCE----------EEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEE----------EecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 34567788899999999998773211 12345677999999999999998877654
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=7.8e-26 Score=233.62 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=160.5
Q ss_pred ccccCcEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 197 QAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
..+...+.+++|||||++|++| +.|++|+|||+.++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------ 167 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------ 167 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence 4566779999999999988755 47899999999873
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
..+..+. |.+.|.+++|+|++ ++++++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+
T Consensus 168 ---~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~ 241 (365)
T 4h5i_A 168 ---TEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK 241 (365)
T ss_dssp ---EEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred ---cEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence 3344444 77889999999998 666666 556777777666655432 4788999999999 999999999887
Q ss_pred ----cEEEEeCCCCcE-----EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 351 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 351 ----~i~vwd~~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
.+++|++..... ..+.+|...|++++|+|+|++||+|+.|+.|++||+++.+.... ....|...|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~------~~~gH~~~V 315 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI------FKQAHSFAI 315 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE------ETTSSSSCE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE------ecCcccCCE
Confidence 688899876543 34667889999999999999999999999999999988764322 123456899
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGV 449 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~ 449 (645)
++++|+|+| ++|++++.|++|+|||+.
T Consensus 316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 316 TEVTISPDS-TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence 999999998 899999999999999975
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.4e-24 Score=226.54 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=194.9
Q ss_pred cccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 192 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 192 ~~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
..+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.++
T Consensus 24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------------------------------------- 64 (391)
T 1l0q_A 24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------------------------------- 64 (391)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------------------------------------
T ss_pred EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------------------------------------
Confidence 344566665 48999999999976 67779999999999873
Q ss_pred CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEe
Q 006424 271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS 347 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s 347 (645)
+.+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++
T Consensus 65 -------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~ 135 (391)
T 1l0q_A 65 -------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNN 135 (391)
T ss_dssp -------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEET
T ss_pred -------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeC
Confidence 3344454444 89999999987 554 55567999999999999998888778899999999 88866 6888
Q ss_pred CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424 348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 426 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 426 (645)
.|+.|++||+.+++..........+.+++|+|+++++ ++++.++.|++||+++..... .+. +...+.+++|
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-------~~~~~~~~~~ 207 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-------VEAAPSGIAV 207 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-------cCCCccceEE
Confidence 8999999999999888776667788999999999987 566788999999998775432 221 1257899999
Q ss_pred cCCCCcEEEEEE---CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE-EEEeCCccEEEEeCCCCC
Q 006424 427 SRDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 427 s~~g~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~t~s~dg~I~iwd~~~~~ 494 (645)
+|+| .++++++ .++.|++||+.......... ....+.+++|+|++++| ++++.|+.|++||+.+++
T Consensus 208 ~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 208 NPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 9998 6677666 78999999987544333332 23457899999999988 667889999999998864
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=9.6e-25 Score=231.00 Aligned_cols=242 Identities=10% Similarity=0.077 Sum_probs=201.1
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+.+|.+.|++++|+|+++++++++.|+.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~------------------------------------------- 200 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT------------------------------------------- 200 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-------------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-------------------------------------------
Confidence 4668999999999999999999999999999999986
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-----
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----- 347 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----- 347 (645)
.+.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+.....+.+++|+| +++.+++++
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 --LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN 277 (433)
T ss_dssp --CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred --ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence 34456677889999999999987 55 455589999999999999998888777899999999 898988888
Q ss_pred ---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 348 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 348 ---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
.|+.|++||+++++......+...+.+++|+|+++.+ ++++.++.|++||+.+..... .+. +...+.+
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~ 349 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT 349 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence 4889999999999888877777789999999999755 556889999999998765432 222 1367899
Q ss_pred EEEcCCCCcEEEEEEC---------------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEE
Q 006424 424 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV 487 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~i 487 (645)
++|+|+| .++++++. ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus 350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 9999998 67777766 5799999987544333322 3557899999999999998875 999999
Q ss_pred EeCCC
Q 006424 488 WNYDE 492 (645)
Q Consensus 488 wd~~~ 492 (645)
|+++.
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-25 Score=230.84 Aligned_cols=241 Identities=10% Similarity=0.071 Sum_probs=183.9
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc-CC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ES 278 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (645)
.+.|.++.|+|+ +++|+.|++|++|+...... +++.. ..
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~-------------------------------------~~~~~~~~ 115 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT-------------------------------------ILDSKTNK 115 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-------------------------------------EEETTTCC
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-------------------------------------EeecCCcc
Confidence 456778888888 99999999999999875110 01111 12
Q ss_pred Cceeec-cCccCeEEEEEcC--CC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 279 PLQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 279 ~~~~l~-~h~~~V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
.+..+. +|.+.|.+++|+| ++ ++++++.||+|++||+++++.+... .+...+.+++|+| ++.+|++|+.||.|
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 233333 6778999999999 77 8999999999999999999987666 3556899999999 99999999999999
Q ss_pred EEEeCCCCcEE--Eeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe--EEEEEc
Q 006424 353 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFS 427 (645)
Q Consensus 353 ~vwd~~~~~~~--~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i--~~i~~s 427 (645)
++||+++++.. .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+.. +...+ .+++|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID 269 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence 99999998765 5666 899999999999999999999 55999999987764322111111 11222 579999
Q ss_pred CCCCcEEEEEEC-CCeEEEEECCcceeeEeecCCCCCeEEEEEec---CCCEEEEEeCCccEEEEeCC
Q 006424 428 RDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 428 ~~g~~~l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp---~~~~l~t~s~dg~I~iwd~~ 491 (645)
|+| .+|++++. |+.|++|+.......+.. .++..+.|++ +.+.+++++.||.+.++-..
T Consensus 270 ~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 270 DSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp TTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 998 79999888 999999997644333332 4567888888 88999999999999988644
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2.5e-24 Score=212.38 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=140.8
Q ss_pred cCccCeEEEEEcCCCeEEEEe---CCCcEEEEec-CCCeEEEEe-cCCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEeC
Q 006424 285 GHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~~l~s~s---~dg~I~iwd~-~~~~~~~~~-~~~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~ 357 (645)
+|...|..+ +++.+++++ .|+.|++|++ .+++.+..+ .|...++.++|+|. ++.+|++++.|++|++||+
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 455555554 467666654 4999999999 447776655 48888888888873 5689999999999999999
Q ss_pred CCCcEEEee-cc---CCCeEEEEEccCCCEE------------EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424 358 CEKRVVDWA-DV---RDVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 358 ~~~~~~~~~-~~---~~~v~~l~~sp~g~~l------------~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i 421 (645)
.+++++... ++ ...+.+++|+|+|+++ ++|+.|++|++||..+...... ..... ...|...+
T Consensus 211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v-~~~~~-p~Gh~~~~ 288 (356)
T 2w18_A 211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV-MLYCL-PPGQAGRF 288 (356)
T ss_dssp TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE-EEECC-CTTCCCCE
T ss_pred CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE-EEeec-cCCCccee
Confidence 999876643 33 3367788999999876 5678899999999987765321 11110 11223344
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe-EEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i-~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
.+..++ + .++++++.|++|+|||+.+.........|...+ ..++|+|||++|++|+.|++|+|||+
T Consensus 289 lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 289 LEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 444444 4 689999999999999988654444433465554 46899999999999999999999996
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.7e-24 Score=227.52 Aligned_cols=303 Identities=11% Similarity=0.043 Sum_probs=217.9
Q ss_pred CcEEEEEECCCCC-EEEEEe----CCC----cEEEEEc--CCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 201 GCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 201 ~~V~~l~fspdg~-~L~sgs----~Dg----~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
..|....|++.|. ++++|+ .|| .|++||+ .++....
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~--------------------------------- 109 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA--------------------------------- 109 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---------------------------------
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---------------------------------
Confidence 4567777877765 666776 467 8999999 7633210
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcC---------------CCeEEEEeCC------CcEEEEecCCCeEEEEecCCC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHN 328 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~---------------~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~ 328 (645)
...+.+|...+..+++++ ++.++.++.+ +.|++||++.+.......|..
T Consensus 110 ----------~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~ 179 (415)
T 2hqs_A 110 ----------QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ 179 (415)
T ss_dssp ----------EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS
T ss_pred ----------eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC
Confidence 134666777676666553 4466666554 799999998655555556888
Q ss_pred cEEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEE-EEecCCe--EEEEEecCCc
Q 006424 329 YVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGND 402 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~g~~dg~--i~iwd~~~~~ 402 (645)
.+.+++|+| +++.|++++.++ .|++||+.+++...+..+...+.+++|+|+|+.|+ +++.+|. |++||+.+..
T Consensus 180 ~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 180 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred cceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 999999999 999999999875 99999999999888888888999999999999888 5665554 9999998765
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-CC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
.. . +.. +...+.+++|+|+| ++|++++. ++ .|++||....... ....+...+.+++|+|+|++|+++
T Consensus 259 ~~--~--l~~----~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 259 IR--Q--VTD----GRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EE--E--CCC----CSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EE--e--CcC----CCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEE
Confidence 42 1 121 24678999999998 67776665 45 6778887643321 222255678899999999999988
Q ss_pred eCC---ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCccCCC
Q 006424 480 GDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDS 555 (645)
Q Consensus 480 s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~ 555 (645)
+.+ +.|++||+.+++.... .....+..++|+|+|..|+..+.+.....+..|+.... ...+..+
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~~l------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQVL------------SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp EECSSCEEEEEEETTTCCEEEC------------CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred ECcCCceEEEEEECCCCCEEEe------------cCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 864 6899999987743111 11124567888888888876665544344566665332 2356667
Q ss_pred CccccCccccCCCC
Q 006424 556 ERFSLGSWFSNDGP 569 (645)
Q Consensus 556 ~~~~~~~~fs~dg~ 569 (645)
...+.+++|||.-.
T Consensus 397 ~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 397 DGQVKFPAWSPYLH 410 (415)
T ss_dssp SSEEEEEEECCCCC
T ss_pred CCCCcCCccccccc
Confidence 78889999998754
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.2e-23 Score=207.63 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=151.1
Q ss_pred ccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 199 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 199 H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
|.+.|++++|+|| ++++++++.+ +++|++.+++....... ...+.+..+...
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~--------g~d~~V~~~~~s-------------- 165 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT--------LSDQQVEVMTFA-------------- 165 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESS--------STTCEEEEEEEC--------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEeccc--------CCCCcEEEEEEC--------------
Confidence 4567889999999 8899998854 77888765433222110 011222111110
Q ss_pred ccCCCceeeccCccCeEEEEEcC---CC-eEEEEeCCCcEEEEecCCCeEEEEec-C---CCcEEEEEEeeCCCCEE---
Q 006424 275 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF--- 343 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~---~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~~~v~~l~~~p~~~~~l--- 343 (645)
.+++.+..+.+|...++.++|++ ++ .|++++.|++|+|||+.+++++.++. | ...+.+++|+| ++.++
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~ 244 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL 244 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence 02455667788999999999998 44 89999999999999999999999885 3 33677889999 88876
Q ss_pred ---------EEEeCCCcEEEEeCCCCcEEEee------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424 344 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 344 ---------~s~s~dg~i~vwd~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
++|+.|++|++||..+++.+... +|...+.+..+ ++..+++|+.||+|++||+.+++....
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t-- 320 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL-- 320 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE--
Confidence 56888999999999998876532 44444443333 488999999999999999998875432
Q ss_pred eeccccccCCC-CeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424 409 DFHDRKKTSGN-KITGIQFSRDESQRIMITSEDSKLRILDG 448 (645)
Q Consensus 409 ~~~~~~~~~~~-~i~~i~~s~~g~~~l~~~s~dg~I~iwd~ 448 (645)
+.+ |.. .+.+++|+|+| ++|++|+.|++|+|||.
T Consensus 321 -L~g----H~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 -LPP----VSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -ECC----C--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred -ecC----CCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 222 223 34568999998 89999999999999984
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.4e-23 Score=218.73 Aligned_cols=264 Identities=12% Similarity=0.106 Sum_probs=200.2
Q ss_pred cccccccCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424 194 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fsp--------------dg~~L~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (645)
.++.+|...+..+++++ .+..++.++.+ +.|++||+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---------------------- 168 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---------------------- 168 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence 34566666666666654 25566666654 7999999864
Q ss_pred EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCC---cEEEEecCCCeEEEEecCCCc
Q 006424 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY 329 (645)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~ 329 (645)
.....+.+|...|.+++|+|++ .|++++.++ .|++||+.+++......+...
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 2356777899999999999998 899998875 999999999988776678889
Q ss_pred EEEEEEeeCCCCEEE-EEeCCCc--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCce
Q 006424 330 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL 403 (645)
Q Consensus 330 v~~l~~~p~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~ 403 (645)
+.+++|+| +++.|+ +++.++. |++||+.+++...+..+...+.+++|+|+|++|++++. ++ .|.+||+.+...
T Consensus 225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 99999999 898777 6666654 99999999998888888899999999999999998876 45 677778776543
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
. .+.. +...+.+++|+|+| .+|++++.+ ..|++||+...... ....+ ..+.+++|+|+|++|++++
T Consensus 304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-SSCEEEEECTTSSEEEEEE
T ss_pred E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEE-EecCC-CCcCCeEEcCCCCEEEEEE
Confidence 2 1111 23578899999998 677766654 58999998754332 22223 3889999999999999988
Q ss_pred CCc---cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424 481 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 526 (645)
Q Consensus 481 ~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~ 526 (645)
.++ .|++||+.+..... ...+++.+..++|+|-..
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~-----------l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKAR-----------LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EETTEEEEEEEETTSCCEEE-----------CCCSSSEEEEEEECCCCC
T ss_pred cCCCccEEEEEECCCCcEEE-----------eeCCCCCCcCCccccccc
Confidence 776 79999987552111 123457788999998754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=3.2e-23 Score=224.69 Aligned_cols=326 Identities=12% Similarity=0.055 Sum_probs=228.9
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec-c
Q 006424 207 KFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-G 285 (645)
Q Consensus 207 ~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 285 (645)
.|+|++.++++++.|++|.+||..++ +.+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g 178 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTG 178 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecC
Confidence 38899999999999999999999873 3455555 3
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCcEEEEec--CCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEe-CCCcEEEEeCC
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVC 358 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~--~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s-~dg~i~vwd~~ 358 (645)
|. +..++|+|++ +|++++.|++|.+||+ .+++++..+.+...+..++|+|. +++++++++ .+++|.+||..
T Consensus 179 ~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 179 YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 43 8899999998 8999999999999999 88999988888888999999982 577777777 48999999999
Q ss_pred CCcEEEeecc------------CCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 359 EKRVVDWADV------------RDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 359 ~~~~~~~~~~------------~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+++++..... ...+.++.++|++.. +++...+|.|.+||..+...... .... +...+.++.
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~-----~~~~~~~~~ 330 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIG-----AAPFLHDGG 330 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-EEEE-----CCSSCCCEE
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-EEec-----cCcCccCce
Confidence 9887664322 236889999997765 45566789999999987553221 1111 135677899
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCccee--eEee--cCCCCCeEEEEEecC-CCEEEEEe-CCccEEEEeCCCCCcCCCc
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKG--LPKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~--~~~~~~i~~v~~sp~-~~~l~t~s-~dg~I~iwd~~~~~~~~~~ 499 (645)
|+|+|..+++++..+++|.+||..+... .+.. ..|.+....+ ++|+ +.+++++. .|++|.+||+++...+.
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~-- 407 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-- 407 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--
Confidence 9999843444555689999999875433 3332 1244444443 5787 66667765 58999999998732110
Q ss_pred ccCCcceeeeeecCCcEEEEecCCCCccccccCCCC----ccccCccccccccCCc-----------cCCCCccccCccc
Q 006424 500 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLETAPW-----------IRDSERFSLGSWF 564 (645)
Q Consensus 500 ~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~~~~-----------~~~~~~~~~~~~f 564 (645)
+.......+.. +.+..+.++++|++..||...... ....+.+|+....... +..+...+..+.|
T Consensus 408 ~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 408 YAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TBTSEEEEEEC-SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred hcCeEEEEEEc-CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 00011111111 223456788899998888665211 2345667776433322 1344677889999
Q ss_pred cCCCCCCcCCCC----CCCcCCCCCCccC
Q 006424 565 SNDGPCRGSATW----PAEKLPLWDVTID 589 (645)
Q Consensus 565 s~dg~~l~s~s~----~d~~i~iWd~~~~ 589 (645)
+|||+.+..+.| .++.|.|||..++
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 999998875543 3689999999998
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.9e-23 Score=245.54 Aligned_cols=360 Identities=11% Similarity=-0.007 Sum_probs=247.7
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
+.+.+|.+.+.++.|+++ .++++++.||.++||.+...
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~----------------------------------------- 234 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD----------------------------------------- 234 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence 445789999999999998 67778888999999987541
Q ss_pred eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec------------CCCcEEEEEEe-eCC
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID 339 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~------------~~~~v~~l~~~-p~~ 339 (645)
+.....+..|. .+...+|+|+| .|+++ .++.|.+||+...... .+. |...+.+++|+ | +
T Consensus 235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d 307 (1045)
T 1k32_A 235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D 307 (1045)
T ss_dssp ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence 22334455454 46677999998 56666 5899999999554433 332 23468999999 9 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEeeccCC-CeEEEEEccCCCEEEEEecCCeEE-EEEecCCceeeeEEeeccccccC
Q 006424 340 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~~g~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
++.+++++ ++.|++|++.++....+..+.. .+..++|+ +|+.++.++.++.+. +||+.+..... + . .+
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l--~----~~ 377 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--F--E----EN 377 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--C--C----CC
T ss_pred CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--e--c----CC
Confidence 99888888 7899999999988888777777 89999999 999999999888888 88987664321 1 1 23
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC----------ccEEE
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD----------CRVYV 487 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d----------g~I~i 487 (645)
...+..++|+|+| ++|++++.++.|++||+...........|...+.+++|||||++|++++.+ +.|++
T Consensus 378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 4678999999998 899999999999999987544333333477788999999999999988764 49999
Q ss_pred EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccC---------------------------
Q 006424 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCS--------------------------- 540 (645)
Q Consensus 488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~--------------------------- 540 (645)
||+.+++...... +......++|+|||..|+..+.+......
T Consensus 457 ~d~~~g~~~~l~~-----------~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1045)
T 1k32_A 457 YDMEGRKIFAATT-----------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 525 (1045)
T ss_dssp EETTTTEEEECSC-----------SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred EECCCCcEEEeeC-----------CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence 9998764211111 12223445566666555533321110000
Q ss_pred ------------cccccc---ccCCccCCCCccccCccccCCCCCCcC------------CCCCCCcCCCCCCccCCCCC
Q 006424 541 ------------QKWDNL---ETAPWIRDSERFSLGSWFSNDGPCRGS------------ATWPAEKLPLWDVTIDSDGY 593 (645)
Q Consensus 541 ------------~~w~~~---~~~~~~~~~~~~~~~~~fs~dg~~l~s------------~s~~d~~i~iWd~~~~~~~~ 593 (645)
..|+.. .....+..+...+.+++|+|||+.+++ ......+|.+||+.+++
T Consensus 526 ~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~--- 602 (1045)
T 1k32_A 526 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--- 602 (1045)
T ss_dssp GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---
T ss_pred cccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc---
Confidence 001110 011122334455678899999985653 11114477888888772
Q ss_pred cCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424 594 CQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 639 (645)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~ 639 (645)
..... .......+++ ||+.|++++.| .|++|++.
T Consensus 603 --------~~~l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 603 --------VTEVK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp --------EEEEE--EEEEEEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred --------EEEee--cCcceEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence 11111 1122344555 89999999877 79999974
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.4e-22 Score=238.12 Aligned_cols=367 Identities=11% Similarity=0.061 Sum_probs=246.3
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCC------CcEEEEEcCCCce-----------------eeeEecCCCCcccCCC
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAA-----------------SCKSFTDDGGFGSNAK 250 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D------g~I~iwd~~~~~~-----------------~~~~~~~~~~~~~~~~ 250 (645)
+.|.+|.+.|.+++|||||++||+++.+ ..|++|++.++.. ....|++++.++....
T Consensus 46 ~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~ 125 (1045)
T 1k32_A 46 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 125 (1045)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEEC
Confidence 4567899999999999999999988654 3799999876532 2234555554322111
Q ss_pred C-------ceEEecccCCCcceeecC---------------------------------CCcee-ccCCCceeeccCccC
Q 006424 251 E-------GKIKFGKKKSSHVPVVIP---------------------------------DEVFQ-IEESPLQELHGHKGD 289 (645)
Q Consensus 251 ~-------~~~~~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~~~~~l~~h~~~ 289 (645)
. ..+..+............ ..+|. ........+.+|...
T Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~ 205 (1045)
T 1k32_A 126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH 205 (1045)
T ss_dssp TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence 1 112211111111000000 01111 111334556789999
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424 290 VLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 367 (645)
Q Consensus 290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~- 367 (645)
+.++.|+++..+++++.|+.+.+|.+.. +.....+.+...+...+|+| +++.++++. ++.|++||+....+..+..
T Consensus 206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~ 283 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIG 283 (1045)
T ss_dssp CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCC
T ss_pred ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccC
Confidence 9999999886677888899999998753 33344444333467789999 999888875 8999999996665554333
Q ss_pred ----------cCCCeEEEEEc-cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC-CeEEEEEcCCCCcEEE
Q 006424 368 ----------VRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN-KITGIQFSRDESQRIM 435 (645)
Q Consensus 368 ----------~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~s~~g~~~l~ 435 (645)
+...+.+++|+ |+|+.+++++ ++.+.+|+..+..... ... +.. .+..++|+ +| ..++
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~----~~~~~~~~~~~s-dg-~~l~ 352 (1045)
T 1k32_A 284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPE----PLRIRYVRRGGD-TK-VAFI 352 (1045)
T ss_dssp CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSC----CSCEEEEEECSS-SE-EEEE
T ss_pred cccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccC----CCcceEEeeeEc-CC-CeEE
Confidence 23468999999 9999999887 8899999987654321 111 234 78899999 87 7888
Q ss_pred EEECCCeEE-EEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424 436 ITSEDSKLR-ILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 513 (645)
Q Consensus 436 ~~s~dg~I~-iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 513 (645)
.++.++.+. +||..... ..+. .+...+..++|+|||++|++++.++.|++||+.+++.... .-.+.
T Consensus 353 ~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~----------~~~~~ 420 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI----------ERSRE 420 (1045)
T ss_dssp EEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----------EECSS
T ss_pred EEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe----------ccCCC
Confidence 888888898 99976432 2222 4677899999999999999999999999999987742111 11234
Q ss_pred CcEEEEecCCCCccccccCCCC-------ccccCccccccccC-CccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424 514 GVSVAVQWPGIGTEQKSLCSSS-------LRDCSQKWDNLETA-PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 585 (645)
Q Consensus 514 g~~~~v~~s~~~~~l~~~~~~~-------~~~~~~~w~~~~~~-~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd 585 (645)
+.+..++|+|||..|+....+. ....+.+|+..... ..+..+...+.+++|+|||++++.++. ++..++|+
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~-~~~~~~~~ 499 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPD 499 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEEC
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec-ccCCcCcc
Confidence 5556788888888887554432 23456677664332 234455556777899999998887765 55666665
Q ss_pred C
Q 006424 586 V 586 (645)
Q Consensus 586 ~ 586 (645)
.
T Consensus 500 ~ 500 (1045)
T 1k32_A 500 R 500 (1045)
T ss_dssp S
T ss_pred h
Confidence 4
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.1e-23 Score=232.80 Aligned_cols=344 Identities=10% Similarity=0.040 Sum_probs=216.8
Q ss_pred cCcEEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 200 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~-Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
...|.+++|||||++|++++. || .|++||+.++............. ....+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~----~~~~~~~----------------- 94 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLP----GTETLSD----------------- 94 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccc----ccccccc-----------------
Confidence 457999999999999999998 88 89999998865432221110000 0000000
Q ss_pred eccCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC---eEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424 274 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 274 ~~~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
+....+... .....|.+++|+|+| +|++++. +.|++||+.++ .......+...+.+++|+| +++.|++++
T Consensus 95 --~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 95 --EEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR 170 (741)
T ss_dssp --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred --hhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence 000000000 012458889999998 6777776 99999999988 6555556778899999999 999999988
Q ss_pred CCCcEEEEeCCCCcEEEeeccCCC-----------------eEEEEEccCCCEEEEEecCC-------------------
Q 006424 348 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG------------------- 391 (645)
Q Consensus 348 ~dg~i~vwd~~~~~~~~~~~~~~~-----------------v~~l~~sp~g~~l~~g~~dg------------------- 391 (645)
++.|++||+.+++...+...... +.++.|+|||++|++++.|+
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 56899999999887765443222 47899999999999988765
Q ss_pred --------------eEEEEEecC-CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-----CCeEEEEECCcc
Q 006424 392 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-----DSKLRILDGVDV 451 (645)
Q Consensus 392 --------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-----dg~I~iwd~~~~ 451 (645)
.|.+||+.+ ..... +... ..+...+..++| ||| ++|++++. +..|++||..+.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQW--IDLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEE--ECCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEE--ecCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence 788888877 55322 1111 123467899999 998 66665543 578999998743
Q ss_pred e--eeEeecCCCC---CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE-ecCCCC
Q 006424 452 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV-QWPGIG 525 (645)
Q Consensus 452 ~--~~~~~~~~~~---~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v-~~s~~~ 525 (645)
. ..+... ... .+..++|+|||+++++++.||.++||.++....... ...++..+..+ .|+|++
T Consensus 323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~----------l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAA----------LTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEE----------SCCSSSCEEEEEEEETTT
T ss_pred ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeee----------eeecceEEEeEeEEeCCC
Confidence 3 222221 112 346889999999999999999888887762211100 01112334444 477777
Q ss_pred ccccccCCCCccccCccccccc--c-CCccCCCCccccCccccCCCCCCcCCCCC-C--CcCCCCCCcc
Q 006424 526 TEQKSLCSSSLRDCSQKWDNLE--T-APWIRDSERFSLGSWFSNDGPCRGSATWP-A--EKLPLWDVTI 588 (645)
Q Consensus 526 ~~l~~~~~~~~~~~~~~w~~~~--~-~~~~~~~~~~~~~~~fs~dg~~l~s~s~~-d--~~i~iWd~~~ 588 (645)
..|+....+.......+|.... . ...+.. ...+..++|||||+.++..... . ..+.+|+...
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 6665433332222344554321 1 112222 3445688999999977643221 1 3566676543
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=3.7e-21 Score=208.44 Aligned_cols=302 Identities=10% Similarity=0.052 Sum_probs=208.7
Q ss_pred ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEc--CCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 268 (645)
Q Consensus 191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (645)
.+.+++..+.. +.+++|+|||++|++++.|++|++||+ .++
T Consensus 170 ~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~------------------------------------ 212 (543)
T 1nir_A 170 KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP------------------------------------ 212 (543)
T ss_dssp CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC------------------------------------
T ss_pred eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC------------------------------------
Confidence 34556663333 899999999999999999999999999 542
Q ss_pred CCCceeccCCCceeeccCccCeEEEEEcC----CC-eEEEEe-CCCcEEEEecCCCeEEEEecC------------CCcE
Q 006424 269 PDEVFQIEESPLQELHGHKGDVLDLAWSN----SN-YLLSCS-MDKTVRMWQVGCNQCLNVFDH------------HNYV 330 (645)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~----~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~~------------~~~v 330 (645)
+.+..+. +...+..++|+| ++ ++++++ .+++|.+||..+++++..+.. ...+
T Consensus 213 ---------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 213 ---------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp ---------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred ---------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 2344454 345679999999 87 777777 489999999999998887742 2268
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeE
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEK 407 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~ 407 (645)
.++.++|..+.++++...++.|.+||+.+.+... ...+...+..+.|+|+|+++++++ .+++|.+||..+.+... .
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~ 361 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-L 361 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-E
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-e
Confidence 8999999444566777788999999998754322 445667788999999999877665 58899999999876533 2
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCc-------ceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
+.. ....|......+ ++|++...++++. .|++|.+||... ....-....+...+..+.++|++++|+++
T Consensus 362 i~~--g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 362 VDV--GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp EEC--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred ecc--CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 222 112233333333 4677546677765 689999999764 33223333366677889999999999998
Q ss_pred e-------CCccEEEEeCCCCCcCCCcccCCcceee-eeecCCcEEEEecCCCCcccccc--CCCCccccCccccc
Q 006424 480 G-------DDCRVYVWNYDELCFPSSKQKNSVRSCE-HFFSEGVSVAVQWPGIGTEQKSL--CSSSLRDCSQKWDN 545 (645)
Q Consensus 480 s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~v~~s~~~~~l~~~--~~~~~~~~~~~w~~ 545 (645)
+ .+++|.+||+.+++.....- .+.... .-.+...+..+.|+|+|..||.. +.+.....+.+|+.
T Consensus 439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 439 TTFNPDARISQSVAVFDLKNLDAKYQVL--PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CTTCSSHHHHTCEEEEETTCTTSCCEEE--CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred cCCCCCcccCceEEEEECCCCCCCeEEe--echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 7 27799999999886431110 000000 00123457788899999988854 22222344556665
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.7e-22 Score=224.19 Aligned_cols=284 Identities=11% Similarity=0.022 Sum_probs=193.9
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----Cc
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KR 361 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~ 361 (645)
...|.+++|+|++.++.+ .++.|++||+.+++......+...+.+++|+| +++.|+++ .|+.|++||+.+ ++
T Consensus 81 ~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 81 AFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp -CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred ccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 357999999999755554 45999999999998877777778899999999 99999885 579999999998 77
Q ss_pred EEEeeccCCC---------------eEEEEEccCCCEEEEEe---------------------------------cCCeE
Q 006424 362 VVDWADVRDV---------------ISAICYIPDGKGFIVGS---------------------------------ITGTC 393 (645)
Q Consensus 362 ~~~~~~~~~~---------------v~~l~~sp~g~~l~~g~---------------------------------~dg~i 393 (645)
...+...... +.++.|+|||++|++++ .++.|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 6664333222 58999999999999987 34679
Q ss_pred EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-----eEEEEECCcc--eeeEeecCCCC---C
Q 006424 394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILDGVDV--IHKFKGLPKSG---S 463 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-----~I~iwd~~~~--~~~~~~~~~~~---~ 463 (645)
.+||+.+....... . ...+...+.+++|+|+| +.|++++.++ .|++||..+. ...+....+.. .
T Consensus 238 ~~~d~~~~~~~~~~--~---~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 238 GIYHLATGKTVYLQ--T---GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEETTTTEEEECC--C---CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEECCCCceEeec--c---CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 99999876542211 1 11234678999999998 7787777665 9999998754 22222111222 3
Q ss_pred eEEEEEec--CCCEEEEEeCCccEEEEeCC-CCCcCCCcccCCcceeeeeecCCcEEE-EecCCCCccccccCCCCc--c
Q 006424 464 QMSASFTT--TGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVA-VQWPGIGTEQKSLCSSSL--R 537 (645)
Q Consensus 464 i~~v~~sp--~~~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-v~~s~~~~~l~~~~~~~~--~ 537 (645)
+..+.|+| ||+++++++.||.++||+++ ++...... ..+...+.. ++|+|++..|+..+.+.. .
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l----------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV----------TKGEWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC----------CCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec----------CCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 46789999 99999999999999999876 22111000 011223433 678888877765444322 1
Q ss_pred ccCccccccccCCccCCCCccccCccccCCCCCCcCCCC-CC--CcCCCCCCccC
Q 006424 538 DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW-PA--EKLPLWDVTID 589 (645)
Q Consensus 538 ~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~-~d--~~i~iWd~~~~ 589 (645)
..+..|+..........+...+.+++|||||++++.... +. ..|.+||+.++
T Consensus 382 ~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp BEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 233344432322222234455678899999997765422 11 46899998876
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=6.6e-21 Score=194.28 Aligned_cols=249 Identities=12% Similarity=0.154 Sum_probs=175.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~D-g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------------------------- 74 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------------------------- 74 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence 477789999999999999988886 999999997 3211
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEec---CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-C
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I 348 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~---~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~ 348 (645)
..+..+..+. .+.+++|+|++ ++++++ .++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .
T Consensus 75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 149 (343)
T 1ri6_A 75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK 149 (343)
T ss_dssp ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence 1123333333 78899999997 566555 4889999999 4445555666666789999999 888888777 8
Q ss_pred CCcEEEEeCCC-CcEEE-----e-eccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC--Cceeee-EEeeccccccC
Q 006424 349 DGKVRIWGVCE-KRVVD-----W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS 417 (645)
Q Consensus 349 dg~i~vwd~~~-~~~~~-----~-~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~--~~~~~~-~~~~~~~~~~~ 417 (645)
++.|++||+.+ ++... . ......+..++|+|+|+++++++ .++.+.+|++.. ...... ...........
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 89999999987 65432 1 22345788999999999776665 789999999964 222111 11111100011
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCC
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD 491 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~ 491 (645)
...+.+++|+|+|..+++++..++.|.+||+.. .............+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 245778999999843444555799999999862 122222211223488999999999988887 68999999665
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=9.8e-22 Score=222.22 Aligned_cols=310 Identities=13% Similarity=0.105 Sum_probs=202.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.+.+++|+|||+++++ +.||+|++||+.++ +...
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g---------------------------------------------~~~~ 51 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN---------------------------------------------TSTV 51 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC---------------------------------------------CCEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC---------------------------------------------cEEE
Confidence 4678999999998776 78999999999873 3334
Q ss_pred eeccCcc---CeEEEEEcCCC-eEEEEeCC---------CcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424 282 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 282 ~l~~h~~---~V~~l~~s~~~-~l~s~s~d---------g~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s 345 (645)
.+.+|.. .|.+++|+||| +|++++.+ +.+.+||+.+++...... +...+..++|+| +++.|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence 4555554 49999999998 78888764 788899999887632222 344588999999 9999999
Q ss_pred EeCCCcEEEEeCCCCcEEEeecc-CCC------------------eEEEEEccCCCEEEEEecCC---------------
Q 006424 346 GSIDGKVRIWGVCEKRVVDWADV-RDV------------------ISAICYIPDGKGFIVGSITG--------------- 391 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~~-~~~------------------v~~l~~sp~g~~l~~g~~dg--------------- 391 (645)
++. +.|++||+.+++...+... ... +.+++|+|||+.|++++.++
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 885 7999999998876654432 222 37899999999999987553
Q ss_pred -------------------eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEEC
Q 006424 392 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG 448 (645)
Q Consensus 392 -------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~ 448 (645)
.|++||+.+..... .+..+.....+...+.+++|+||| +++++.+. +..|++||.
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence 78889987765321 111111111123568899999998 67766543 368999997
Q ss_pred Ccce--eeEeecCCCCCe----EEEEEecCCCEEEE--EeCCc------cEEEEe-CCCCC---cCCCcccCCcceeeee
Q 006424 449 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQKNSVRSCEHF 510 (645)
Q Consensus 449 ~~~~--~~~~~~~~~~~i----~~v~~sp~~~~l~t--~s~dg------~I~iwd-~~~~~---~~~~~~~~~~~~~~~~ 510 (645)
.... ..+... +...+ ..++|+|||+.|+. +..++ .|++|| ..++. ......
T Consensus 288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---------- 356 (723)
T 1xfd_A 288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---------- 356 (723)
T ss_dssp TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC----------
T ss_pred CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec----------
Confidence 6433 222221 23333 37899999997775 44566 577777 34432 111110
Q ss_pred ecCCcEE-EEecCCCCccccccCCCCccccCcccccccc----CCccCC---CCccccCccccCCCCCCcC
Q 006424 511 FSEGVSV-AVQWPGIGTEQKSLCSSSLRDCSQKWDNLET----APWIRD---SERFSLGSWFSNDGPCRGS 573 (645)
Q Consensus 511 ~~~g~~~-~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~----~~~~~~---~~~~~~~~~fs~dg~~l~s 573 (645)
.+..+. .++|+||+..|+....+.......+|..... ...+.. +...+..++|||||++++.
T Consensus 357 -~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 357 -GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp -SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred -CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 111222 3578888877765444322233445554211 111222 3455778899999996654
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=6.6e-21 Score=193.69 Aligned_cols=237 Identities=11% Similarity=0.117 Sum_probs=168.4
Q ss_pred EEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424 206 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284 (645)
Q Consensus 206 l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (645)
..|.++++ .+++++.++.|.+||..++ +....+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~---------------------------------------------~~~~~~~ 37 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL---------------------------------------------EILNQIT 37 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc---------------------------------------------ceeeeEE
Confidence 34666555 5778888999999999873 2334444
Q ss_pred cCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeE-EEEecCCCcEEE-EEEeeCCCCEEEEEeCCC---cEEEEeC
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDHHNYVTC-VQFNPIDDNYFISGSIDG---KVRIWGV 357 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~-~~~~~~~~~v~~-l~~~p~~~~~l~s~s~dg---~i~vwd~ 357 (645)
.+...+ +++|+|++ ++++++. ++.|.+||+.+++. ...+........ ++|+| ++++++++..++ .|.+||+
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence 445556 99999998 5666555 89999999999887 666654444444 99999 999888555553 8999999
Q ss_pred CCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCe-EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 358 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
.+++............+++|+|+|++++++ ..++. +.+|++.......... .. ..........++|+|+|..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence 999888777777778999999999866655 45578 9999998544322211 00 0112356789999999844555
Q ss_pred EEECCCeEEEEECCccee---eEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 436 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~~~---~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
++..++.|++||...... ..... ....+..++|+|+|++|+.++ .++.|.+||+.++
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred EeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 566789999999864322 22222 346678899999999776665 5789999999876
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=8.7e-20 Score=186.95 Aligned_cols=273 Identities=9% Similarity=0.060 Sum_probs=196.3
Q ss_pred ccCcEEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
....+..++|+|+|++|++++. ++.|.+||..++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------------------------------- 80 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------------------------------- 80 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------------------------------------
Confidence 4456889999999998888774 5689999988732
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCC----------cEEEEEEeeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID 339 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~v~~l~~~p~~ 339 (645)
.+..+.. ...+..++|++++ ++ +++..++.|.+||..+++.+..+.... .+.+++|+| +
T Consensus 81 -------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 151 (353)
T 3vgz_A 81 -------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A 151 (353)
T ss_dssp -------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred -------EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence 2233332 3346778999987 44 455667999999999999887775321 278999999 8
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424 340 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416 (645)
Q Consensus 340 ~~~l~s~s--~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 416 (645)
++.+++++ .++.|.+||..+++...... +...+.+++|+|+|+++++++.++.+.+||+.+...... +... ...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~ 228 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG 228 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence 88777766 47889999999988877655 566689999999999999999999999999987765322 2221 111
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCc
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 495 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~ 495 (645)
+...+.+++|+|+|..++++...++.|.+||..+........... ...++|+|+++++++++ .++.|.+||..+++.
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 235678899999984344444456999999986443322221121 25689999999766655 689999999987632
Q ss_pred CCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC
Q 006424 496 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
.. .+...+....++|+|++..|+.....
T Consensus 307 ~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 307 VK-----------TFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EE-----------EEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EE-----------EEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 11 12223456788999999977755543
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.8e-21 Score=188.61 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=167.7
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-CeEEEEec-C-CCcEEEEEEeeCCCCEEEEEeC--CC--cE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DG--KV 352 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~~-~-~~~v~~l~~~p~~~~~l~s~s~--dg--~i 352 (645)
..+..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| +++++++++. ++ .|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence 3455688899999999998 666665 88999999998 77766654 3 36789999999 9999999983 33 45
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEE-EEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
..|++.++....+..+. .+..++|+|+++.++ ++..++.+.+|++.........+ . .+...+.++.|+|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~----~~~~~~~~~~~s~dg- 184 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--T----HGEGRNDGPDYSPDG- 184 (297)
T ss_dssp EEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--C----CSSSCEEEEEECTTS-
T ss_pred EEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--c----cCCCccccceECCCC-
Confidence 55556666655544443 488999999999887 67889999999976433222211 1 124678999999998
Q ss_pred cEEEEEE-CCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-----------ccEEEEeCCCCCcCCC
Q 006424 432 QRIMITS-EDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDELCFPSS 498 (645)
Q Consensus 432 ~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-----------g~I~iwd~~~~~~~~~ 498 (645)
.+++.++ .++.+++|++. ..........+...+..++|+|++++|++++.+ +.|++||+.+++..
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-- 262 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE-- 262 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce--
Confidence 5555554 68999999864 222222333356678899999999999988866 57999999876321
Q ss_pred cccCCcceeee-eecCCcEEEEecCCCCccccccCCC
Q 006424 499 KQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQKSLCSS 534 (645)
Q Consensus 499 ~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~~~~~~ 534 (645)
.... ..+.+.+..++|+|++..|+..+.+
T Consensus 263 -------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 263 -------TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp -------EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred -------eeeccCCCCcccccceECCCCCEEEEEEec
Confidence 1111 1234556678899999888765553
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=1.6e-19 Score=183.38 Aligned_cols=247 Identities=10% Similarity=0.094 Sum_probs=174.2
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+..+...+ +++|+|+|++|++++. ++.|.+||..++
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~----------------------------------------- 72 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE----------------------------------------- 72 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-----------------------------------------
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-----------------------------------------
Confidence 344455666 9999999997766665 899999999873
Q ss_pred eccCCC-ceeeccCccCeEEEEEcCCC-eEEEEeCCC---cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEe
Q 006424 274 QIEESP-LQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS 347 (645)
Q Consensus 274 ~~~~~~-~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s 347 (645)
.. ...+..+..+..+++|+|++ +++++..++ .|.+||+.+++.+..+.......+++|+| +++++ ++..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 147 (331)
T 3u4y_A 73 ----PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR 147 (331)
T ss_dssp ----SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred ----ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence 22 44555566666669999998 666444442 89999999999988888777789999999 88754 4555
Q ss_pred CCCc-EEEEeCCCCcE-----EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 348 IDGK-VRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 348 ~dg~-i~vwd~~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
.++. |.+|++..... .........+..++|+|+|+++++++ .++.|.+||+.+.........+.. ...
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~ 222 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL 222 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence 6688 99999875322 22334456689999999999766655 688999999987765111111221 256
Q ss_pred eEEEEEcCCCCcEEE-EEECCCeEEEEECCccee----eEeec--CCC---CCeEEEEEecCCCEEEEEe-CCccEEEEe
Q 006424 421 ITGIQFSRDESQRIM-ITSEDSKLRILDGVDVIH----KFKGL--PKS---GSQMSASFTTTGKHIISIG-DDCRVYVWN 489 (645)
Q Consensus 421 i~~i~~s~~g~~~l~-~~s~dg~I~iwd~~~~~~----~~~~~--~~~---~~i~~v~~sp~~~~l~t~s-~dg~I~iwd 489 (645)
+..++|+|+| ++++ +...++.|.+||..+... .+... .+. .....++|+|++++|++++ .++.|.+||
T Consensus 223 ~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 223 PGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp CCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 7789999998 5554 445578999999874332 11111 011 1225689999999887665 467999999
Q ss_pred CCCCC
Q 006424 490 YDELC 494 (645)
Q Consensus 490 ~~~~~ 494 (645)
+....
T Consensus 302 ~~~~~ 306 (331)
T 3u4y_A 302 ISGKV 306 (331)
T ss_dssp TTSCE
T ss_pred ecCCc
Confidence 98753
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.6e-20 Score=184.17 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=172.6
Q ss_pred ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--------------------------------------- 75 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--------------------------------------- 75 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence 3556899999999999999999987 78999999976 321
Q ss_pred eccCCCceeeccC-ccCeEEEEEcCCC-eEEEEe--CCCcEEEEec--CCCeEEEEecCCCcEEEEEEeeCCCCEEE-EE
Q 006424 274 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG 346 (645)
Q Consensus 274 ~~~~~~~~~l~~h-~~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~ 346 (645)
.....+| ...+.+++|+|++ +|++++ .++...+|.+ .++. ...+.+...+.+++|+| +++.++ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence 2223334 4678899999998 788887 3345555554 5554 34444445589999999 888776 77
Q ss_pred eCCCcEEEEe--CCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 347 SIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 347 s~dg~i~vwd--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
+.++.+++|+ +.++....+..+...+.+++|+|+|+++++++ .++.+.+|++.........+ .. +...+.+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~--~~----~~~~~~~ 221 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI--TD----SAYGDWF 221 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC--CC----CSEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE--ec----CCcccCC
Confidence 8899899998 45677777788888999999999999888776 58999999987333222222 11 2356889
Q ss_pred EEEcCCCCcEEEEEECC-----------CeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424 424 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
+.|+|+| .+|++++.+ +.|++||+... ........+...+..++|+|++++|++++.+.
T Consensus 222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999998 677776655 57999998643 22333334677889999999999999887653
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2e-19 Score=183.23 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=163.0
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCC-CcEEEEecC--CCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeC
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV 357 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~d-g~I~iwd~~--~~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~ 357 (645)
.|...+.+++|+|++ +|++++.+ +.|.+|++. +++ .+..+.....+.+++|+| +++++++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 467788999999997 68888776 999999997 554 334454445889999999 8887776665 788999999
Q ss_pred C---CCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC-CceeeeE-EeeccccccCCCCeEEEEEcCCCC
Q 006424 358 C---EKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 358 ~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
. ..+..........+.+++|+|+|+++++++ .++.|.+||+.. ....... ..... .....+.+++|+|+|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---VEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---STTCCEEEEEECTTSS
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc---CCCCCcceEEECCCCC
Confidence 4 344444555556789999999999888887 899999999986 4332111 01111 1135788999999984
Q ss_pred cEEEEEECCCeEEEEECCc--c----eeeEeec----CCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcc
Q 006424 432 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQ 500 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~--~----~~~~~~~----~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~ 500 (645)
.+++++..++.|.+|+... . ....... .....+..++|+|++++|+++ ..++.|++||+......
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~---- 266 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---- 266 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC----
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc----
Confidence 3445555889999999852 1 1122211 113467789999999988754 47899999999732100
Q ss_pred cCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
......+...+.+..++|+|++..|+..+.
T Consensus 267 ---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 267 ---LSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp ---EEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred ---eEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 011111222233567888898887776553
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.6e-20 Score=202.96 Aligned_cols=232 Identities=12% Similarity=0.065 Sum_probs=170.3
Q ss_pred ccCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+..+|++++|+|||++||+++. ||+++||++.++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------------------------------------- 54 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------------------------------------- 54 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence 3557999999999999999887 999999998542
Q ss_pred CCceeeccCc-cCeEEEEEcCCCeEEEEeC---CCcEEEEecCC---CeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCC
Q 006424 278 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID 349 (645)
Q Consensus 278 ~~~~~l~~h~-~~V~~l~~s~~~~l~s~s~---dg~I~iwd~~~---~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~d 349 (645)
....+..|. ..+..++|+|+..+++++. +....+|.+.. +... .+.....+...+|+| +++ .+++.+.+
T Consensus 55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~ 131 (582)
T 3o4h_A 55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE 131 (582)
T ss_dssp -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence 223444454 6899999999865666664 45566665533 3333 333333445678888 664 34444445
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
+.+.+||+.+++...+..+.. .+++|+|||++++.++.+ +.|++||+.+.... .+ .. +...+..++
T Consensus 132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l--~~----~~~~~~~~~ 201 (582)
T 3o4h_A 132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VF--DS----GEGSFSSAS 201 (582)
T ss_dssp SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EE--CC----SSCEEEEEE
T ss_pred CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--Ee--ec----CCCccccce
Confidence 556699999988877666555 889999999999988777 78999998877643 12 21 236689999
Q ss_pred EcCCCCcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEE--------EecCCCEEEEEeCCccEEEEeC
Q 006424 426 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~--------~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
|+||| +.|+++..++ .|++||....... ....+...+..++ |+|||.++++++.||++++|++
T Consensus 202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 99998 7788888888 8999998754443 3333555566666 9999999999999999999999
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=5.9e-19 Score=180.61 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=170.8
Q ss_pred cccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------------------------- 75 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------------------------- 75 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence 4556788899999999 555544 68999999965321
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecC-CC--eEEEEecCC----------CcEEEEEEeeCC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID 339 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~-~~--~~~~~~~~~----------~~v~~l~~~p~~ 339 (645)
..+..+..+...+..++|+|++ +|++++ .++.|.+|++. .+ ..+..+.+. ..+.+++|+| +
T Consensus 76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d 151 (347)
T 3hfq_A 76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D 151 (347)
T ss_dssp ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence 1233444567788999999998 677777 67999999996 33 333333221 2488999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCC-CCcEEEe----eccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecC--Cceeee-EEee
Q 006424 340 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG--NDLKLE-KVDF 410 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~-~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~--~~~~~~-~~~~ 410 (645)
++++++...++.|++||+. ++++... ......+..++|+|+|++++++ ..++.+.+|++.. ...... ....
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 8866666678899999998 5554332 1233467889999999976664 5678999999985 322111 1111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-ccEE
Q 006424 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY 486 (645)
Q Consensus 411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g~I~ 486 (645)
..........+..++|+|+|..++++...++.|.+|++.. .........+...+..++|+|||++|++++.+ +.|.
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 1110011145889999999843446667799999999762 12222222345567899999999998888764 8999
Q ss_pred EEeCC
Q 006424 487 VWNYD 491 (645)
Q Consensus 487 iwd~~ 491 (645)
+|+++
T Consensus 312 v~~~d 316 (347)
T 3hfq_A 312 LYARD 316 (347)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99654
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=2.6e-19 Score=201.72 Aligned_cols=267 Identities=10% Similarity=0.023 Sum_probs=184.8
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
...|.+++|||| ++++.+. |+.|++||+.++.
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---------------------------------------------- 112 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---------------------------------------------- 112 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence 356999999999 6555553 5999999997632
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-----CeEEEEec-CCCc--------------EEEEEEeeC
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI 338 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-----~~~~~~~~-~~~~--------------v~~l~~~p~ 338 (645)
...+..+...+.+++|+|+| .|++ +.|+.|++||+.+ ++...... +... +.++.|+|
T Consensus 113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 23344566778889999998 6666 5789999999998 77665443 2222 48899999
Q ss_pred CCCEEEEEe---------------------------------CCCcEEEEeCCCCcEEEee---ccCCCeEEEEEccCCC
Q 006424 339 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK 382 (645)
Q Consensus 339 ~~~~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~---~~~~~v~~l~~sp~g~ 382 (645)
++++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999987 4467999999998876644 4567799999999999
Q ss_pred EEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEECCCeEEEEECC-cceee
Q 006424 383 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK 454 (645)
Q Consensus 383 ~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~--~g~~~l~~~s~dg~I~iwd~~-~~~~~ 454 (645)
.|++++.++ .|.+||+.+............ ......+.++.|+| +| .++++++.|+.+++|+.. .....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence 999988775 899999987732222111111 00112346789999 98 788999999999998754 22222
Q ss_pred EeecCCCCCeEE-EEEecCCCEEEEEeC-Cc----cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccc
Q 006424 455 FKGLPKSGSQMS-ASFTTTGKHIISIGD-DC----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ 528 (645)
Q Consensus 455 ~~~~~~~~~i~~-v~~sp~~~~l~t~s~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l 528 (645)
.....+...+.. ++|+|+++.|+.++. ++ .|+.||+.++...... +.+.+..++|+||+..+
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~------------~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT------------PESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC------------CSSSEEEEEECTTSSEE
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc------------CCCceEEEEECCCCCEE
Confidence 222335566776 799999998876654 44 6777777665321111 12334566666666665
Q ss_pred ccc
Q 006424 529 KSL 531 (645)
Q Consensus 529 ~~~ 531 (645)
+..
T Consensus 416 ~~~ 418 (706)
T 2z3z_A 416 IDI 418 (706)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=3.3e-19 Score=201.43 Aligned_cols=247 Identities=11% Similarity=0.107 Sum_probs=171.7
Q ss_pred cccccccC---cEEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCC
Q 006424 194 QEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 261 (645)
Q Consensus 194 ~~l~~H~~---~V~~l~fspdg~~L~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (645)
..+.+|.. .|.+++|||||++|++++.+ +.+.+||+.++..
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------------- 103 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--------------------------- 103 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---------------------------
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce---------------------------
Confidence 33445554 49999999999999999875 7788999987421
Q ss_pred CcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCc----------
Q 006424 262 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------- 329 (645)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~---------- 329 (645)
..+....+|...+..++|+|+| .|++++. +.|++||+.+++...... +...
T Consensus 104 ----------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 104 ----------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp ----------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred ----------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 0112223456668899999998 7777776 799999999887766553 2322
Q ss_pred --------EEEEEEeeCCCCEEEEEeCCC----------------------------------cEEEEeCCCCcE-EEee
Q 006424 330 --------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDWA 366 (645)
Q Consensus 330 --------v~~l~~~p~~~~~l~s~s~dg----------------------------------~i~vwd~~~~~~-~~~~ 366 (645)
+.+++|+| +++.|++++.|+ .|++||+.+++. ..+.
T Consensus 167 ~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred EEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999 999999887553 799999988874 4444
Q ss_pred cc------CCCeEEEEEccCCCEEEEEecC----CeEEEEEecCCceeeeEEeeccccccCCCCe----EEEEEcCCCCc
Q 006424 367 DV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDESQ 432 (645)
Q Consensus 367 ~~------~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i----~~i~~s~~g~~ 432 (645)
.+ ...+.+++|+|||+++++.... ..|.+||+.+........ ... ...+ ..+.|+|+|..
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~-----~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DES-----EAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EEC-----SSCCCCCCCCCEECTTSCS
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-ecc-----CCEEeccCCCceEcCCCCe
Confidence 33 5678999999999988776543 579999998776432211 111 1222 36799999855
Q ss_pred EEEE-EECCC------eEEEEE-CCcc----eeeEeecCCCCCeEE-EEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424 433 RIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~-~s~dg------~I~iwd-~~~~----~~~~~~~~~~~~i~~-v~~sp~~~~l~t~s~d---g~I~iwd~~~~ 493 (645)
++++ +..++ .|++|| .... ...+. .+...+.. ++|+|||+.|+..+.+ +.+++|+++..
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5554 56677 577777 3322 22222 12334554 6999999999876655 78999998643
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=4e-19 Score=201.41 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=175.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|.+++|||||++|++++. +.|++||+.++. ....
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~-------------------------------------------~~~~ 144 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEG-------------------------------------------KAAV 144 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCS-------------------------------------------TTSC
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCC-------------------------------------------cceE
Confidence 34889999999999999987 899999998620 0023
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecC-CCc----------------EEEEEEeeCCCCE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-HNY----------------VTCVQFNPIDDNY 342 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~----------------v~~l~~~p~~~~~ 342 (645)
..+..|...+.+++|+|+| +|++++ ++.|++||+.+++....... ... +.+++|+| +++.
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~ 222 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSA 222 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSC
T ss_pred EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCE
Confidence 4556678889999999998 677666 56999999999887665532 221 47899999 9999
Q ss_pred EEEEeCCC---------------------------------cEEEEeCCC-CcEEEee---ccCCCeEEEEEccCCCEEE
Q 006424 343 FISGSIDG---------------------------------KVRIWGVCE-KRVVDWA---DVRDVISAICYIPDGKGFI 385 (645)
Q Consensus 343 l~s~s~dg---------------------------------~i~vwd~~~-~~~~~~~---~~~~~v~~l~~sp~g~~l~ 385 (645)
|++++.|+ .|++||+.+ ++...+. .+...+.+++| |||++|+
T Consensus 223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 99887765 789999988 8766543 46678999999 9999999
Q ss_pred EEec-----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecC
Q 006424 386 VGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP 459 (645)
Q Consensus 386 ~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~ 459 (645)
+++. ++.|.+||+.+...... ...+.. .....+.++.|+|+| +++++++.|+.++||... ... ......
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~--~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQQRVL-AHETSP--TWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCCEEEE-EEEECS--SCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred EEEecccCCeEEEEEEECCCCceEEE-EEcCCC--CcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence 8764 56799999988765332 111110 000135678999998 588899999977777644 111 223333
Q ss_pred CCCCeEEE-EEecCCCEEEEE-eCCc--cEEEEeCCC
Q 006424 460 KSGSQMSA-SFTTTGKHIISI-GDDC--RVYVWNYDE 492 (645)
Q Consensus 460 ~~~~i~~v-~~sp~~~~l~t~-s~dg--~I~iwd~~~ 492 (645)
+...+..+ .|+|+++.|+.. +.++ .++||+++.
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 56678777 599999987654 4455 899999864
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=7.6e-20 Score=206.55 Aligned_cols=241 Identities=10% Similarity=0.064 Sum_probs=164.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284 (645)
Q Consensus 205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (645)
+++|+|||+++++ +.|+.|++||+.++. ....+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~---------------------------------------------~~~~~~ 53 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ---------------------------------------------SYTILS 53 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCC---------------------------------------------EEEEEC
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCc---------------------------------------------EEEEEc
Confidence 7899999976655 469999999998732 233333
Q ss_pred cCcc---CeEEEEEcCCC-eEEEEeC---------CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 285 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 285 ~h~~---~V~~l~~s~~~-~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
+|.. .+.+++||||| +|++++. ++.|++||+.+++.+........+..++|+| +++.|+++. ++.
T Consensus 54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~ 131 (719)
T 1z68_A 54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN 131 (719)
T ss_dssp HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence 3433 48999999998 7777765 7899999999998732222345688999999 999999886 789
Q ss_pred EEEEeCCCCcEEEee--ccCCCe-----------------EEEEEccCCCEEEEEecCC---------------------
Q 006424 352 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG--------------------- 391 (645)
Q Consensus 352 i~vwd~~~~~~~~~~--~~~~~v-----------------~~l~~sp~g~~l~~g~~dg--------------------- 391 (645)
|++||+.+++...+. ++...+ .+++|+|||++|++++.|.
T Consensus 132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 999999888766543 222212 5899999999999987652
Q ss_pred -------------eEEEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC----CeEEEEE----CC
Q 006424 392 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV 449 (645)
Q Consensus 392 -------------~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d----g~I~iwd----~~ 449 (645)
.|++||+.+.... ...+........+...+.+++|+||+ +++++.... ..|.+|| ..
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence 7788888765531 00111101111234678999999996 666664432 3588899 65
Q ss_pred cce--eeEe--ecCCCCCeE-----EEEEecCCCEEEE--EeCCc--cEEEEeCCCCC
Q 006424 450 DVI--HKFK--GLPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELC 494 (645)
Q Consensus 450 ~~~--~~~~--~~~~~~~i~-----~v~~sp~~~~l~t--~s~dg--~I~iwd~~~~~ 494 (645)
... .... ...+...+. .+.|+|||+.|+. +..+| .|++||+.++.
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 322 2221 023455555 7899999996654 44455 57777776654
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=8.4e-19 Score=178.14 Aligned_cols=235 Identities=10% Similarity=0.023 Sum_probs=173.5
Q ss_pred cEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 202 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 202 ~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
.+.+++|+|+|+++ ++++.++.|.+||+.++...
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------------------------------------- 69 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--------------------------------------------- 69 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence 47889999999865 55666889999999874322
Q ss_pred eeec-c----CccCeEEEEEcCCC-eEEEEe------------CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 006424 281 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 342 (645)
Q Consensus 281 ~~l~-~----h~~~V~~l~~s~~~-~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 342 (645)
..+. + |...+.+++|+|++ ++++++ .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 148 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK 148 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence 2221 1 23357789999998 777775 57999999999999888887667788999999 8888
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC------------------------eEEEEEe
Q 006424 343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA 398 (645)
Q Consensus 343 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg------------------------~i~iwd~ 398 (645)
++++ ++.|++||+.+++.............+.|+|+|+.+++.+..+ .|.+||+
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8877 6899999999988765443322122337899998776554332 4689999
Q ss_pred cCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424 399 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
.+.... ...... +...+.+++|+|+| .+++++ ++.|++||........... ....+.+++|+|+|++|++
T Consensus 227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence 887654 222222 23567899999998 677776 7999999987543322222 2346789999999999999
Q ss_pred EeCCccEEEEeCCCCC
Q 006424 479 IGDDCRVYVWNYDELC 494 (645)
Q Consensus 479 ~s~dg~I~iwd~~~~~ 494 (645)
++.++.|++||+.+++
T Consensus 297 ~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 297 GGALGDLAAYDAETLE 312 (337)
T ss_dssp ESBSSEEEEEETTTCC
T ss_pred EcCCCcEEEEECcCCc
Confidence 9999999999998774
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=7.6e-19 Score=185.11 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=170.2
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
+...++.+++++++.++++|+.|| +++|+........ ..... .. ... ...
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~~~------~~------------------~~~--~~~ 84 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPGDD------PN------------------KIV--DKV 84 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTTCC------TT------------------CEE--ECC
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccccC------cc------------------ccc--ccC
Confidence 344689999999999999999998 9999875411000 00000 00 000 011
Q ss_pred CceeeccCccCeEEEEEcCCC-eEE----EEeCCCcEEEEecCCC--------eE---EEEe-cCCCcEEEEEEeeCCCC
Q 006424 279 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN 341 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~-~l~----s~s~dg~I~iwd~~~~--------~~---~~~~-~~~~~v~~l~~~p~~~~ 341 (645)
.... ..|...|.+++|+|++ +|+ +|+.|++|++||+.++ +. +..+ +|...|.+++|+|.+++
T Consensus 85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence 1112 2467889999999997 777 7888999999998654 22 2333 37889999999994489
Q ss_pred EEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc-ccCCC
Q 006424 342 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN 419 (645)
Q Consensus 342 ~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~ 419 (645)
+|++++.||+|++||++++... ....|...|++++|+|+|++|++|+.||.|++||.+. .. ...+..+... ..|..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~-~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QE-KKVIPCPPFYESDHPV 241 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CE-EEEECCCTTCCTTSCE
T ss_pred EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cc-cccccCCcccCCCCce
Confidence 9999999999999999987554 3566788999999999999999999999999999983 22 1222222111 11234
Q ss_pred CeEEEEEcCCCCcEEEE-EECCC------eEEEEECCcc----eeeEeec--------CCCCCeEEEEEecCCCEEEEEe
Q 006424 420 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKGL--------PKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~-~s~dg------~I~iwd~~~~----~~~~~~~--------~~~~~i~~v~~sp~~~~l~t~s 480 (645)
.+.+++|++++ .++++ ++.|| .+++|++... ...+... ....+...+.+-++.+++++++
T Consensus 242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s 320 (434)
T 2oit_A 242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS 320 (434)
T ss_dssp EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence 79999999986 45543 44443 3899997643 1122111 1122223333446767766655
Q ss_pred C-CccEEEEeC
Q 006424 481 D-DCRVYVWNY 490 (645)
Q Consensus 481 ~-dg~I~iwd~ 490 (645)
. .+.|.|...
T Consensus 321 ~~s~dv~vl~~ 331 (434)
T 2oit_A 321 AASTEVSILAR 331 (434)
T ss_dssp TTCSBCEEEEE
T ss_pred CCCCceeEEEe
Confidence 3 455666654
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=1.9e-18 Score=175.49 Aligned_cols=261 Identities=8% Similarity=-0.031 Sum_probs=182.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec-cCcc-Ce
Q 006424 213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV 290 (645)
Q Consensus 213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V 290 (645)
++|++++.++.|.+||+.++. .+..+. ++.. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~~~~~~~~~ 36 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA---------------------------------------------VDKVITIADAGPTP 36 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEECTTCTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCc---------------------------------------------EEEEEEcCCCCCCc
Confidence 479999999999999998732 233333 2222 47
Q ss_pred EEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCC------cEEEEEEeeCCCCEEEEEe------------CCC
Q 006424 291 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG 350 (645)
Q Consensus 291 ~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~------~v~~l~~~p~~~~~l~s~s------------~dg 350 (645)
..++|+|++ .+ ++++.++.|.+||+.+++.+..+.... .+.+++|+| +++++++++ .++
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence 889999997 54 566668899999999998887775433 678899999 898888886 579
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
.|.+||+.+++..........+.+++|+|+|++++++ ++.|.+||+.+..... .+..... .. .+.|+|+|
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~-~~~~~~~----~~---~~~~s~dg 185 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE-DKPIQSW----EA---ETYAQPDV 185 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE-EECSTTT----TT---TTBCCCBC
T ss_pred eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee-eeecccc----CC---CceeCCCc
Confidence 9999999998877766666778899999999988888 6899999998776432 2221110 11 22678887
Q ss_pred CcEEEEEECCC-----------------------eEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424 431 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 486 (645)
Q Consensus 431 ~~~l~~~s~dg-----------------------~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~ 486 (645)
..+++++..++ .|.+||...... ......+...+.+++|+|++++++++ ++.|+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 43333333333 468999774322 23333355678899999999999988 79999
Q ss_pred EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
+||+.+++.... +.....+..++|+|++..|+..+.+ ..+.+|+.
T Consensus 264 ~~d~~~~~~~~~-----------~~~~~~~~~~~~s~dg~~l~~~~~~---~~i~v~d~ 308 (337)
T 1pby_B 264 SFDLEKNASIKR-----------VPLPHSYYSVNVSTDGSTVWLGGAL---GDLAAYDA 308 (337)
T ss_dssp EEETTTTEEEEE-----------EECSSCCCEEEECTTSCEEEEESBS---SEEEEEET
T ss_pred EEECCCCcCcce-----------ecCCCceeeEEECCCCCEEEEEcCC---CcEEEEEC
Confidence 999987632211 1112234567888888877765332 33555554
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=4.2e-17 Score=167.80 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=166.7
Q ss_pred ccCcEEEEEECCCCCEEEEEeCC----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 199 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
|...+..++|+|||++|++++.+ +.|.+|++......
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~--------------------------------------- 88 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT--------------------------------------- 88 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE---------------------------------------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc---------------------------------------
Confidence 66778889999999999999886 79999998651000
Q ss_pred ccCCCceeeccCccCeEEEEEcCCCeEEEEe-CCCcEEEEecCCCeEEEEe----c-----------CCCcEEEEEEeeC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF----D-----------HHNYVTCVQFNPI 338 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s-~dg~I~iwd~~~~~~~~~~----~-----------~~~~v~~l~~~p~ 338 (645)
...+.....+......+++ ..++|++++ .++.|.+|++.....+... . +...+.+++|+|
T Consensus 89 --~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp- 164 (361)
T 3scy_A 89 --LHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP- 164 (361)
T ss_dssp --EEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-
T ss_pred --EEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-
Confidence 0112333345556777888 334566555 6889999999754332211 1 123468899999
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCc-------E-------EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCc
Q 006424 339 DDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND 402 (645)
Q Consensus 339 ~~~~l~s~s-~dg~i~vwd~~~~~-------~-------~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~ 402 (645)
+++++++++ .++.|.+|++.... + .........+..++|+|+|+++++++ .++.|.+|++.+..
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 898666555 47899999886432 1 22334456688999999999888877 68999999998654
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC--CCeEEEEECC--c-ceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424 403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHII 477 (645)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~--dg~I~iwd~~--~-~~~~~~~~~~~~~i~~v~~sp~~~~l~ 477 (645)
..... ... ....+......++|+|+| ++|+++.. ++.|.+|++. . .............+.+++|+|+|++|+
T Consensus 245 ~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 245 LDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred eEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEE
Confidence 32211 111 111223456899999998 66666655 4899999975 1 111222111245678999999999998
Q ss_pred EEe-CCccEEEEeCC
Q 006424 478 SIG-DDCRVYVWNYD 491 (645)
Q Consensus 478 t~s-~dg~I~iwd~~ 491 (645)
+++ .++.|.+|+++
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 887 67899997665
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=4.3e-18 Score=174.18 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=139.5
Q ss_pred cCccCeEEEEEcCCCeEEEEeC---CCcEEEEecCCCeE--EEEe-cCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 006424 285 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV 357 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~~l~s~s~---dg~I~iwd~~~~~~--~~~~-~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~ 357 (645)
.+...+..++|+|++.|++++. ++.|.+||+.+++. +..+ .+...+..++|+| ++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 3456778899999986665554 68999999987763 3332 3667789999999 999888887 6789999999
Q ss_pred C-CCcEEE--eecc----------CCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCceeee-EEeeccccccCCCCeE
Q 006424 358 C-EKRVVD--WADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT 422 (645)
Q Consensus 358 ~-~~~~~~--~~~~----------~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~i~ 422 (645)
. .+.... ...+ ...+.+++|+|+|+.+++...++.|.+|++. +...... ..... ....+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence 5 333222 1111 1248899999999966666678899999998 3332211 11111 124678
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCc--ce----eeEeecCC----CCCeEEEEEecCCCEEE-EEeCCccEEEEeCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD 491 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~----~~~~~~~~----~~~i~~v~~sp~~~~l~-t~s~dg~I~iwd~~ 491 (645)
.++|+|+|..+++++..++.|.+|+... .. ........ ...+..++|+|||++|+ +...++.|.+|+++
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999843555566789999998652 11 11111111 14588999999999874 55568999999986
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=4.1e-18 Score=192.72 Aligned_cols=245 Identities=11% Similarity=0.110 Sum_probs=166.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
...++.|+|||++++++ ||.|++||+.++.. ..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------------------------~~ 50 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------------------------SV 50 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------------------------EE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------------------------EE
Confidence 35689999999999986 99999999988532 22
Q ss_pred eeccCcc-----CeEEEEEcCCC-eEEEEeCC---------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 282 ELHGHKG-----DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 282 ~l~~h~~-----~V~~l~~s~~~-~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.+.+|.. ....++||||| +|+.++.+ +.+.+||+.+++......+...+...+|+| +++.||.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~ 129 (740)
T 4a5s_A 51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV 129 (740)
T ss_dssp EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence 3333432 23458899998 77777765 567799999998876666778899999999 99999888
Q ss_pred eCCCcEEEEeCCCCcEEEeec--cCCCe-----------------EEEEEccCCCEEEEEecCC----------------
Q 006424 347 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG---------------- 391 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~--~~~~v-----------------~~l~~sp~g~~l~~g~~dg---------------- 391 (645)
. |+.|++||+.++....+.. +...+ .++.|||||+.|+.++.|.
T Consensus 130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 5 6899999998887665432 22222 3589999999999875332
Q ss_pred --------------------eEEEEEecC---Cce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE-C---CCeE
Q 006424 392 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-E---DSKL 443 (645)
Q Consensus 392 --------------------~i~iwd~~~---~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~---dg~I 443 (645)
.|++||+.+ ... ....+........+...+..++|+||| +.++... . +..|
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i 287 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM 287 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence 366677766 421 111111110000134568899999998 5555443 2 2479
Q ss_pred EEEECCcce--------eeEeecCCCCCeE-----EEEEecCCCEEE-EEeCC---ccEEEEeCCCCCcC
Q 006424 444 RILDGVDVI--------HKFKGLPKSGSQM-----SASFTTTGKHII-SIGDD---CRVYVWNYDELCFP 496 (645)
Q Consensus 444 ~iwd~~~~~--------~~~~~~~~~~~i~-----~v~~sp~~~~l~-t~s~d---g~I~iwd~~~~~~~ 496 (645)
++||..... ..+....+...+. ...|+|||+.|+ ..+.+ ..|++||..++...
T Consensus 288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 999965432 2221122444443 688999999887 66543 47888998876533
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=5.3e-18 Score=173.23 Aligned_cols=235 Identities=9% Similarity=-0.013 Sum_probs=169.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284 (645)
Q Consensus 205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (645)
.+++++++.++++++.++.|.+||+.++. .+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~ 38 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT---------------------------------------------VYKSCV 38 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc---------------------------------------------EEEEEe
Confidence 45678899999999999999999998732 233333
Q ss_pred cCc-cCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCC-------CcEEEEEEeeCCCCEEEEEeCC-----
Q 006424 285 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID----- 349 (645)
Q Consensus 285 ~h~-~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~v~~l~~~p~~~~~l~s~s~d----- 349 (645)
.+. ..+..++|+|++ .+ +++..++.|.+||+.+++.+..+... ..+.+++|+| +++++++++.+
T Consensus 39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN 117 (349)
T ss_dssp CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence 222 257789999997 44 45667899999999999888776532 2378899999 99999988865
Q ss_pred -------CcEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc-----
Q 006424 350 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK----- 414 (645)
Q Consensus 350 -------g~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----- 414 (645)
+.|.+||+.+++. .....+...+.+++|+|+|+ +++++ +.|.+||+.+..... .+......
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~-~~~~~~~~~~~~~ 193 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTV-ALPLRNWNRKGYS 193 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEE-EECSTTCCCTTBC
T ss_pred cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceec-cccccccCCcccc
Confidence 8999999987443 23334455788999999999 66653 449999987765432 11111000
Q ss_pred ---------------------------------------------------------ccCCCCeEEEEEcC-CCCcEEEE
Q 006424 415 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI 436 (645)
Q Consensus 415 ---------------------------------------------------------~~~~~~i~~i~~s~-~g~~~l~~ 436 (645)
......+.+++|+| +| .++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~ 272 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG 272 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence 00112456778889 87 67777
Q ss_pred EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+ ++.|.+||+.+........ ....+.+++|+|++++|++++.++.|++||+.++
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 7 8899999987544322221 2345678999999999999888999999999876
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.4e-17 Score=175.43 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=128.3
Q ss_pred cccCcEEEEEECCCCCEEE----EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 198 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~----sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
.|.+.|++++|+|+|++|+ +|+.|+.|+|||+.+...... ... .
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~------------~~~------------------~-- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK------------QQK------------------R-- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC------------SSC------------------C--
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc------------CCc------------------c--
Confidence 4678899999999999999 788999999999875210000 000 0
Q ss_pred eccCCCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
....+..+.+|...|.+++|+|+ + +|++++.||+|++||++++..+.. ..|...|++++|+| ++++|++|+.||
T Consensus 138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg 214 (434)
T 2oit_A 138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG 214 (434)
T ss_dssp --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence 00113556789999999999997 4 899999999999999998866543 35788999999999 899999999999
Q ss_pred cEEEEeCCCCcEEEeecc-------CCCeEEEEEccCCCEEEEE-ecCC------eEEEEEecCC
Q 006424 351 KVRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-SITG------TCHFYKASGN 401 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp~g~~l~~g-~~dg------~i~iwd~~~~ 401 (645)
.|++||++......+..+ ...+.+++|++++.++++. ..+| .+++|+++..
T Consensus 215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999984333333222 2379999999988777553 3443 3899999865
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=7.3e-17 Score=165.08 Aligned_cols=227 Identities=7% Similarity=0.050 Sum_probs=168.4
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 201 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
..+..++|+|+|++++ ++..++.|.+||..++...
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------------------------------------------- 124 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------------------------------------------- 124 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------------------------
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE--------------------------------------------
Confidence 3467899999999555 5556899999999875432
Q ss_pred ceeeccCc---------cCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424 280 LQELHGHK---------GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 280 ~~~l~~h~---------~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~ 346 (645)
..+..+. ..+.+++|+|++ ++++++ .++.|.+||..+++.+..+. +...+.+++|+| +++.++++
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~ 202 (353)
T 3vgz_A 125 -GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTT 202 (353)
T ss_dssp -EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEE
T ss_pred -EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEE
Confidence 2222211 236889999987 566554 47899999999999998887 666789999999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEEeec-----cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 347 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
+.++.|.+||+.+++...... +...+..++|+|+|+++++++.+ +.|.+||..+..... .+... .
T Consensus 203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~-------~- 273 (353)
T 3vgz_A 203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAAP-------E- 273 (353)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEECS-------S-
T ss_pred cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEcC-------C-
Confidence 999999999999988765432 34567889999999988777654 899999998776532 22221 1
Q ss_pred eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424 421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
...+.|+|+|..++++...++.|.+||..+........ ....+.+++|+|+|++|+++..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 25689999984445555578999999987543332222 344679999999999887776553
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=1.7e-17 Score=172.31 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=180.6
Q ss_pred cccccccCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424 194 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265 (645)
Q Consensus 194 ~~l~~H~~~V~~-----l~fspdg~~L~sgs~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (645)
..|..|.+.... .+|||||++|+.++. +|. |.+||+.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------------------------- 71 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------------------------- 71 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE--------------------------------
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--------------------------------
Confidence 445566666666 889999999999887 674 7777877632
Q ss_pred eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE--EeeCCCC
Q 006424 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN 341 (645)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~--~~p~~~~ 341 (645)
......+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +...+.... ++| ++.
T Consensus 72 -------------~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~ 137 (388)
T 3pe7_A 72 -------------ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT 137 (388)
T ss_dssp -------------EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred -------------eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence 223334555555567899998 89999999999999999988776665 334443333 477 888
Q ss_pred EEEEEe----------------------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecC------Ce
Q 006424 342 YFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GT 392 (645)
Q Consensus 342 ~l~s~s----------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~d------g~ 392 (645)
+++... .+..|++||+.+++...+..+...+..+.|+| +|+.|+....+ ..
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 876432 34679999999998888888888899999999 99998887754 36
Q ss_pred EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC----eEEEEECCccee-eE-eecCCC---CC
Q 006424 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKS---GS 463 (645)
Q Consensus 393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg----~I~iwd~~~~~~-~~-~~~~~~---~~ 463 (645)
|.++|..+..... +... .....+..+.|+|+|..+++++..++ .|++||+..... .+ ....+. ..
T Consensus 218 l~~~d~~~~~~~~----l~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 218 MWLINEDGTNMRK----VKTH--AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp EEEEETTSCCCEE----SCCC--CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred EEEEeCCCCceEE----eeeC--CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence 7777776544321 1111 00124778899999844444444332 399999874332 11 111100 00
Q ss_pred eEEEEEecCCCEEEEE---------eCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424 464 QMSASFTTTGKHIISI---------GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 464 i~~v~~sp~~~~l~t~---------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
.....|+|||+.|+.. ..+..|++||+.+++.....................+..++|+|||..|+..+
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 1123799999988854 45678999999876421111000000000000001245667888888777444
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=7.5e-19 Score=198.40 Aligned_cols=285 Identities=9% Similarity=0.086 Sum_probs=181.8
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCC----cEEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006424 292 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN----YVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC 358 (645)
Q Consensus 292 ~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~ 358 (645)
+++|+|++.++..+.|++|++||+.+++....+.+.. .+.+++|+| ++++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999977777789999999999999887776443 389999999 9999998876 6899999999
Q ss_pred CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc----cCC---------CCeEEEE
Q 006424 359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG---------NKITGIQ 425 (645)
Q Consensus 359 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~---------~~i~~i~ 425 (645)
+++..........+..++|+|||+.|+.+. ++.|++|++.++.... +...+... ++. ....++.
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcccEE
Confidence 988732122235688999999999999885 7899999998765422 11111100 000 1225899
Q ss_pred EcCCCCcEEEEEECCC----------------------------------eEEEEECCccee----eEe----ecCCCCC
Q 006424 426 FSRDESQRIMITSEDS----------------------------------KLRILDGVDVIH----KFK----GLPKSGS 463 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg----------------------------------~I~iwd~~~~~~----~~~----~~~~~~~ 463 (645)
|+||| ++|++++.|. .|++||+..... .+. ...+...
T Consensus 176 wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 99998 7888776542 788999875432 111 1236677
Q ss_pred eEEEEEecCCCEEEEEeCC----ccEEEEe----CCCCCcCCCcccCCcceeeeeecCCcEE-----EEecCCCCccccc
Q 006424 464 QMSASFTTTGKHIISIGDD----CRVYVWN----YDELCFPSSKQKNSVRSCEHFFSEGVSV-----AVQWPGIGTEQKS 530 (645)
Q Consensus 464 i~~v~~sp~~~~l~t~s~d----g~I~iwd----~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~v~~s~~~~~l~~ 530 (645)
+..++||||++++++.... ..|++|| ..+++...... .....+++.+. .++|+|||..++.
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------HIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE------EEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe------cccccCCceEccccCCccEECCCCCeEEE
Confidence 8999999998877775433 3588899 66653221110 00001112111 4567777775543
Q ss_pred c-CCCCccccCccccccccC-CccCCCCccccCccccCCCCCCcCCCCC----CCcCCCCCCcc
Q 006424 531 L-CSSSLRDCSQKWDNLETA-PWIRDSERFSLGSWFSNDGPCRGSATWP----AEKLPLWDVTI 588 (645)
Q Consensus 531 ~-~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~fs~dg~~l~s~s~~----d~~i~iWd~~~ 588 (645)
. ........+..|+..... ..+......+.++.++ |++.++..+.. ++..++|.+..
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 2 111112334444432222 1233333335566677 88866654442 36788898764
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=5.2e-17 Score=167.45 Aligned_cols=247 Identities=9% Similarity=0.026 Sum_probs=165.9
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
...+..++|+|||++|++++.+ .|.+|++. ++....
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------------------------------------------ 75 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------------------------------------------ 75 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE------------------------------------------
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE------------------------------------------
Confidence 3467889999999999999888 89999986 432110
Q ss_pred CceeeccCccCeEEEEEcCCCe---EEEEe-------------CCCcEEEEecC-CCeEEEEec-----CCCcEEEEEEe
Q 006424 279 PLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQFN 336 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~---l~s~s-------------~dg~I~iwd~~-~~~~~~~~~-----~~~~v~~l~~~ 336 (645)
+.....+ +.+.+++|+|++. +++++ .++++.+|++. .++....+. +...+.+++|+
T Consensus 76 -~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 76 -EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp -EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred -eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence 0011111 1244578899884 33442 68999999997 465543332 45679999999
Q ss_pred eCCCCEEEEEeC-CCcEEEEeCC-CCcEEEe---e--ccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecC--Cceee-
Q 006424 337 PIDDNYFISGSI-DGKVRIWGVC-EKRVVDW---A--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL- 405 (645)
Q Consensus 337 p~~~~~l~s~s~-dg~i~vwd~~-~~~~~~~---~--~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~--~~~~~- 405 (645)
| ++++++++.. ++.|++||+. +++.... . .+...+..++|+|+|+++++++. ++.+.+|++.. +....
T Consensus 154 p-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 154 P-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp T-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred C-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 9 9998887764 6799999998 6765322 1 13567899999999999988775 68999998863 33221
Q ss_pred -eEEe-eccccccCCC------CeEEEE-EcCCCCcEEEEEECC-C-----eEEEEECC-cceee--E-eecCCCCCeEE
Q 006424 406 -EKVD-FHDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--F-KGLPKSGSQMS 466 (645)
Q Consensus 406 -~~~~-~~~~~~~~~~------~i~~i~-~s~~g~~~l~~~s~d-g-----~I~iwd~~-~~~~~--~-~~~~~~~~i~~ 466 (645)
..+. .......+.. .+..++ |+|+| ++|++++.+ + .|.+|++. +.... . ....+...+..
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~ 311 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS 311 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTC
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccc
Confidence 1111 1110011111 478999 99998 666666543 3 89999975 22211 1 12123445667
Q ss_pred EEEec---CCCEEEEEeCC-ccEEEEeCCCC
Q 006424 467 ASFTT---TGKHIISIGDD-CRVYVWNYDEL 493 (645)
Q Consensus 467 v~~sp---~~~~l~t~s~d-g~I~iwd~~~~ 493 (645)
++|+| ||++|++++.+ +.|.+|+++..
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999 89999999864 89999998764
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=3.1e-15 Score=148.33 Aligned_cols=247 Identities=11% Similarity=0.165 Sum_probs=176.6
Q ss_pred ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.+|-....+++++++|+++++.+.++.|.+||... ..... +..
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~-~~~----------------------------------- 68 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FGE----------------------------------- 68 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-ECC-----------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEE-ecc-----------------------------------
Confidence 45667899999999999999988999999999763 11100 000
Q ss_pred CCCceeeccCccCeEEEEE-cCCCeEEEEeC--CCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 277 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~-s~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.....+|...+.++++ .+++.++.++. ++.|.+|| .+++.+..+. +...+.+++++| +++++++...++.
T Consensus 69 ---~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 143 (286)
T 1q7f_A 69 ---CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR 143 (286)
T ss_dssp ---BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred ---cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence 0001235567889999 46776555553 88999999 5677776664 345789999999 8888888777899
Q ss_pred EEEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
|.+||........+. .+...+..++++|+|+++++...++.|++||...... ..+...+ +...+..++++++
T Consensus 144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g----~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEG----ITNYPIGVGINSN 217 (286)
T ss_dssp EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTT----TSCSEEEEEECTT
T ss_pred EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCC----ccCCCcEEEECCC
Confidence 999997654443332 3445689999999998777777899999999754321 2221111 1256889999999
Q ss_pred CCcEEEEEECCC-eEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 430 ESQRIMITSEDS-KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 430 g~~~l~~~s~dg-~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
| .++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|++|++|++...
T Consensus 218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 8 7777777776 999999653 3444444333445789999999987777 57999999998654
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=6e-15 Score=151.60 Aligned_cols=230 Identities=11% Similarity=0.111 Sum_probs=151.0
Q ss_pred CccCeEEEEEcCCC-eEEEEeCC----CcEEEEecCC--CeEE--EEec-CCCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI 354 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~d----g~I~iwd~~~--~~~~--~~~~-~~~~v~~l~~~p~~~~~l~s~s-~dg~i~v 354 (645)
+...+..++|+|++ +|++++.+ +.|.+|++.. ++.. .... +......+++ +++++++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 66778889999998 78888875 7999999865 4432 2332 4456667776 567666665 5789999
Q ss_pred EeCCCCcEE-E------eec--------cCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCce----e-e------eE
Q 006424 355 WGVCEKRVV-D------WAD--------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-L------EK 407 (645)
Q Consensus 355 wd~~~~~~~-~------~~~--------~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~----~-~------~~ 407 (645)
|++.....+ . ..+ +...+.+++|+|+|+++++++ .++.+.+|++..... . . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999753221 1 111 123358899999999776665 478999999976542 1 1 11
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcce----eeEee-cCCCCCeEEEEEecCCCEEEEEeC
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
.... .......++|+|+| +++++++ .++.|.+||+.... ..... ..+......++|+|||++|+++..
T Consensus 205 ~~~~-----~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 205 FKVA-----PGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EECC-----TTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred eecC-----CCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 1111 23567899999998 6666666 68999999976321 11111 223345789999999999977665
Q ss_pred --CccEEEEeCCC--CCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 482 --DCRVYVWNYDE--LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 482 --dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
++.|.+|+++. +... ....+........++|+|+|.+|+....
T Consensus 279 ~~~~~i~v~~~~~~~g~~~---------~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLT---------KVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp SSSCEEEEEEECTTTCCEE---------EEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CCCCEEEEEEEcCCCCcEE---------EeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 48999999963 2110 1111111223457888898888776654
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=2.6e-16 Score=172.99 Aligned_cols=234 Identities=7% Similarity=0.031 Sum_probs=169.5
Q ss_pred ccccc-CcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 196 IQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 196 l~~H~-~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
+..|. ..|.++.|||| +++++++. +...++|.+....
T Consensus 59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~-------------------------------------- 99 (582)
T 3o4h_A 59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR-------------------------------------- 99 (582)
T ss_dssp CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS--------------------------------------
T ss_pred eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC--------------------------------------
Confidence 33454 68999999999 78887775 5556776654300
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+... .+..+. .+...+|+|++ .+++.+.++.+.+||+.+++......+.. .+++|+| +|+.+++++.+
T Consensus 100 ----~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~ 170 (582)
T 3o4h_A 100 ----PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFF 170 (582)
T ss_dssp ----TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEE
T ss_pred ----CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEc
Confidence 01111 222111 23345666664 45555555556699999998777665544 8899999 99999988877
Q ss_pred ----CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 350 ----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 350 ----g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
+.|++||+.+++...+..+...+..++|+|||+.|+++..+| .|++||+.+.... . ... +...+..
T Consensus 171 ~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~--~~~----~~~~~~~ 242 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--D--LEL----PSKDFSS 242 (582)
T ss_dssp ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--E--CCC----SCSHHHH
T ss_pred CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--E--ccC----CCcChhh
Confidence 789999999999888888889999999999999999888888 8999999877654 1 111 1233444
Q ss_pred EE--------EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCC
Q 006424 424 IQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDE 492 (645)
Q Consensus 424 i~--------~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~ 492 (645)
+. |+||| .++++++.|+.+++|++ .. ... ...+.+.+++|+ +++++++++.+ +.+++||..+
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE-RVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE-EEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC-eec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 45 99999 89999999999999998 21 111 244678899999 99999998877 4577777664
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=4.1e-16 Score=161.95 Aligned_cols=296 Identities=9% Similarity=0.002 Sum_probs=182.1
Q ss_pred CCCceeeccCccCeEE-----EEEcCCC-eEEEEeC-CC--cEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEE
Q 006424 277 ESPLQELHGHKGDVLD-----LAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 277 ~~~~~~l~~h~~~V~~-----l~~s~~~-~l~s~s~-dg--~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~ 346 (645)
+..+..+..|...... .+|+|+| +|+.++. ++ .|.+||+.+++......+ ...+..+.|+| +++.|+.+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~ 98 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYV 98 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEE
Confidence 4445666666665555 7899998 6777776 66 488889999988776653 33444678999 99999999
Q ss_pred eCCCcEEEEeCCCCcEEEeecc-CCCeEEE--EEccCCCEEEEEe----------------------cCCeEEEEEecCC
Q 006424 347 SIDGKVRIWGVCEKRVVDWADV-RDVISAI--CYIPDGKGFIVGS----------------------ITGTCHFYKASGN 401 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~-~~~v~~l--~~sp~g~~l~~g~----------------------~dg~i~iwd~~~~ 401 (645)
+.++.|++||+.+++...+... ...+... .++|+++.++... .++.|.+||+.+.
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999999999887654433 3334333 3489999887532 3467899998877
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECC------CeEEEEECCcc-eeeEeecCCCCCeEEEEEecCC
Q 006424 402 DLKLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSED------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~d------g~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
.... +... ...+..+.|+| +| ..|+....+ ..|.++|.... ...+........+....|+|||
T Consensus 179 ~~~~--l~~~------~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 179 ESTV--ILQE------NQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp CEEE--EEEE------SSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred ceEE--eecC------CccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence 5432 2111 25688999999 87 677666653 37888886532 2222221111357788999999
Q ss_pred CEEEEEeC-C----ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC------CccccCcc
Q 006424 474 KHIISIGD-D----CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS------SLRDCSQK 542 (645)
Q Consensus 474 ~~l~t~s~-d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~------~~~~~~~~ 542 (645)
+.|+..+. + +.|++||+.+++......... .......+++ .+|+|||..|+....+ .....+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~----~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDG----SLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTS----SEEEEEECCC------------CCCCEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCC----CeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 98866543 2 249999999875322111110 0000011222 2477777777643321 22233445
Q ss_pred ccccccCC-ccCCCCc-----------cccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424 543 WDNLETAP-WIRDSER-----------FSLGSWFSNDGPCRGSATWPAEKLPLWDVT 587 (645)
Q Consensus 543 w~~~~~~~-~~~~~~~-----------~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~ 587 (645)
|+...... .+..+.. .+...+|||||+.++..+..++...+|.+.
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 55432211 2222222 467889999999887665546777777544
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.69 E-value=1.2e-15 Score=155.53 Aligned_cols=227 Identities=8% Similarity=0.022 Sum_probs=157.2
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCcEEEeecc
Q 006424 293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADV 368 (645)
Q Consensus 293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~ 368 (645)
+++++++ .+++++.+++|.+||+.+++.+..+.... .+..++|+| +++.++ ++..++.|.+||+.+++.......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 3556666 78899999999999999999988886554 688999999 887654 555689999999998887654332
Q ss_pred -------CCCeEEEEEccCCCEEEEEecC------------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 369 -------RDVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 369 -------~~~v~~l~~sp~g~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
...+..++|+|+|+++++++.+ +.|.+||+.+............ ...+.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~d 158 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD 158 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECCC
Confidence 2237889999999999998865 8999999987443211111111 235788999999
Q ss_pred CCcEEEEEECCCeEEEEECCcce--eeEeecC------------------------------------------------
Q 006424 430 ESQRIMITSEDSKLRILDGVDVI--HKFKGLP------------------------------------------------ 459 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~------------------------------------------------ 459 (645)
| . +++++ +.|++||..+.. ..+....
T Consensus 159 g-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 159 G-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp S-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred C-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 8 5 45543 349999976432 2221110
Q ss_pred ------------------CCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEe
Q 006424 460 ------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 520 (645)
Q Consensus 460 ------------------~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 520 (645)
....+.+++|+| ++++++++ ++.|++||+.+++.... +........++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~-----------~~~~~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA-----------ANLDHTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-----------EECSSCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-----------EcCCCCccceE
Confidence 011455778889 99999988 88999999987632111 11122345788
Q ss_pred cCCCCccccccCCCCccccCccccc
Q 006424 521 WPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 521 ~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
|+|++..|+..+.+ ..+.+|+.
T Consensus 302 ~s~dg~~l~~~~~~---~~v~v~d~ 323 (349)
T 1jmx_B 302 FDKKGDKLYLGGTF---NDLAVFNP 323 (349)
T ss_dssp ECSSSSCEEEESBS---SEEEEEET
T ss_pred ECCCCCEEEEecCC---CeEEEEec
Confidence 89998888764433 44566665
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.4e-15 Score=165.80 Aligned_cols=247 Identities=9% Similarity=-0.009 Sum_probs=171.3
Q ss_pred ccccccccCcEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 270 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (645)
.+.+.+|...|..++|++++-++++. +.++...||....+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------------- 57 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-------------------------------------- 57 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------------------------------------
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------------------------------------
Confidence 45577899999999999887777777 66889999986431
Q ss_pred CceeccCCCceeeccCccCeE---------EEEEc--CCC-e-EEEEeC-CCcEEEEecC--C-CeEEEEec-----CCC
Q 006424 271 EVFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHN 328 (645)
Q Consensus 271 ~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~-~-l~s~s~-dg~I~iwd~~--~-~~~~~~~~-----~~~ 328 (645)
.....+..|...+. ...|+ ||+ . |+.++. +..|.+|++. . +....... +..
T Consensus 58 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~ 130 (662)
T 3azo_A 58 -------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGL 130 (662)
T ss_dssp -------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCE
T ss_pred -------CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCc
Confidence 11233333433333 45555 887 6 565543 5667777766 3 44433333 466
Q ss_pred cEEEEEEeeCCCCEEEEEeCC----------CcEEEEeCCC------CcEEEee-ccCCCeEEEEEccCCCEEEEEecC-
Q 006424 329 YVTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSIT- 390 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~d----------g~i~vwd~~~------~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~d- 390 (645)
.+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..++|+|||++|+.++.+
T Consensus 131 ~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 131 RWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred cccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence 789999999 99999988876 5899999998 7777777 667788899999999999987755
Q ss_pred -------CeEEEEEec-CCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECCcce-eeEeec
Q 006424 391 -------GTCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGL 458 (645)
Q Consensus 391 -------g~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~-~~~~~~ 458 (645)
..|.+||+. ++.. ....+... +...+..+.|+||| +++++++.++ .|++||..... ..+..
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~- 282 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCR- 282 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSC-
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeeccc-
Confidence 379999998 3421 11122111 13578899999998 5888888888 66667653221 11111
Q ss_pred CCCCC--------eEEEEEecCCCEEEEEeCCccEEEE--eCCCC
Q 006424 459 PKSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDEL 493 (645)
Q Consensus 459 ~~~~~--------i~~v~~sp~~~~l~t~s~dg~I~iw--d~~~~ 493 (645)
.+... +..++|+|+++++++++. +.++|| |+.++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 11111 467899999999999998 999999 55444
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=1e-15 Score=159.20 Aligned_cols=236 Identities=11% Similarity=0.102 Sum_probs=156.6
Q ss_pred CcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 201 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
..+.+++|||||++|+.++.+ ..|.+||+.++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------------------------- 72 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------------------------- 72 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence 347788999999998877543 3678888776321
Q ss_pred CCceeeccCccC-eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEE-------------------EEE
Q 006424 278 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF 335 (645)
Q Consensus 278 ~~~~~l~~h~~~-V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~-------------------l~~ 335 (645)
..+..+... ...+.|+|++ .|+.++.++.|++||+.+++...... +...... +.|
T Consensus 73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence 122222222 3347899998 88899999999999999887665554 3332222 245
Q ss_pred eeCCCCEEEEE-----eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecC------CeEEEEEecCCce
Q 006424 336 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL 403 (645)
Q Consensus 336 ~p~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~d------g~i~iwd~~~~~~ 403 (645)
+| +++.++.+ ..+..|++||+.+++...+..+...+..+.|+| +++.++..+.+ ..|.+||+.+...
T Consensus 150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 66 66655443 356689999999988877777778899999999 78877776644 3578888765442
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEECCccee-eEeecCCCCCeEEEEEec-CCCEE
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHI 476 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp-~~~~l 476 (645)
.. +... .....+..+.|+|+| ..|+.++.+ +.|++||+..... .+... . ... +.|+| +|+++
T Consensus 229 ~~----l~~~--~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l 297 (396)
T 3c5m_A 229 RK----IKEH--AEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLM 297 (396)
T ss_dssp EE----SSCC--CTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEE
T ss_pred eE----eecc--CCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceE
Confidence 21 1110 001357789999998 555554433 4599999864322 22211 1 233 89999 99998
Q ss_pred EEEe----------------CCccEEEEeCCCCC
Q 006424 477 ISIG----------------DDCRVYVWNYDELC 494 (645)
Q Consensus 477 ~t~s----------------~dg~I~iwd~~~~~ 494 (645)
++++ .++.|++||+.++.
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8765 34789999998764
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=2.3e-14 Score=147.04 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=165.4
Q ss_pred cccccccCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 263 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (645)
.++..+..+ .++|+|||++|++++ .++.|.+||..+.+..
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~---------------------------- 94 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE---------------------------- 94 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence 345555555 899999999999886 3678999998864332
Q ss_pred ceeecCCCceeccCCCceeecc------CccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEE-ecCCCcEEEE
Q 006424 264 VPVVIPDEVFQIEESPLQELHG------HKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV 333 (645)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~-~~~~~~v~~l 333 (645)
..+.. +......++++|++ +|+++.. +++|.+||+.+++.+.. +..... ..+
T Consensus 95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v 156 (361)
T 2oiz_A 95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV 156 (361)
T ss_dssp -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence 22211 22456678999998 7776653 68999999999999888 765443 335
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEe------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424 334 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 334 ~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~ 406 (645)
.+.|.....+++.+.||.+.+|+... ++.... .........+.+++++..++..+.++.+.++|+........
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~ 236 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD 236 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence 67773447888899999999999865 554411 11111122334467888888888899999999976543221
Q ss_pred -EEeecccccc----CCCCeEEEEEcCCCCcEEEEEE----------CCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 407 -KVDFHDRKKT----SGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 407 -~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
.+........ .......++|+|++...+++.. ..+.|.+||..+.........+. +.+++|+|
T Consensus 237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp 314 (361)
T 2oiz_A 237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ 314 (361)
T ss_dssp EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence 1111110000 0011123689999744444443 13589999987654444433344 89999999
Q ss_pred CCCEEEEEeCCccEEEEeCCCC
Q 006424 472 TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 472 ~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
||++|++++. +.|.+||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 9999999887 99999999887
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=2.6e-14 Score=147.16 Aligned_cols=199 Identities=9% Similarity=0.125 Sum_probs=138.2
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCcEEEEecC-CCeEEEEecC--CCcEEEEEEeeCCCCE--EEEEe------------
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS------------ 347 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~-~~~~~~~~~~--~~~v~~l~~~p~~~~~--l~s~s------------ 347 (645)
+...+..++|+|++ +|++++.+ .|.+|++. +++......+ .+.+.+++|+| ++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence 33467889999998 68888887 99999997 7876554432 13356689999 8884 44543
Q ss_pred -CCCcEEEEeCC-CCcEEEee-----ccCCCeEEEEEccCCCEEEEEec-CCeEEEEEec-CCceee-eEEeeccccccC
Q 006424 348 -IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKL-EKVDFHDRKKTS 417 (645)
Q Consensus 348 -~dg~i~vwd~~-~~~~~~~~-----~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~-~~~~~~-~~~~~~~~~~~~ 417 (645)
.++.+.+|++. .+++.... .+...+.+++|+|+|++++++.. ++.|.+|++. ++.... ..+... .+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~ 191 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DP 191 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----ST
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CC
Confidence 68999999997 35543321 24567999999999998888764 6799999998 554321 111111 12
Q ss_pred CCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECC--ccee-----eEeecC-----CCC------CeEEEE-EecCCCEEE
Q 006424 418 GNKITGIQFSRDESQRIMITSE-DSKLRILDGV--DVIH-----KFKGLP-----KSG------SQMSAS-FTTTGKHII 477 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~--~~~~-----~~~~~~-----~~~------~i~~v~-~sp~~~~l~ 477 (645)
...+..++|+|+| +++++++. ++.|.+|+.. +... .+.... +.. .+..++ |+|||++|+
T Consensus 192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 3568999999998 66766664 7899999754 2211 122111 111 478999 999999988
Q ss_pred EEeCC-c-----cEEEEeCC
Q 006424 478 SIGDD-C-----RVYVWNYD 491 (645)
Q Consensus 478 t~s~d-g-----~I~iwd~~ 491 (645)
+++.+ + .|.+|+++
T Consensus 271 v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEESSTTSCCEEEEEEEC
T ss_pred EECCCCCCCCCCeEEEEEEC
Confidence 77643 2 89999996
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=4.2e-14 Score=143.29 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=140.1
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-EEEEec----------CCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISGS-IDGK 351 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~~----------~~~~v~~l~~~p~~~~~l~s~s-~dg~ 351 (645)
++-.....+++++++ .+++...++.|++||..... .+..+. +-.....++++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999988 66677778999999986542 444442 2336889999985577777775 6899
Q ss_pred EEEEeCCCCcEEEeec-c----------CCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424 352 VRIWGVCEKRVVDWAD-V----------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~-~----------~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 419 (645)
|++||.. +....... . -.....++++|+ +.++++...++.|++||..+..... .+... .+..
T Consensus 168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~~----~~~~ 241 (329)
T 3fvz_A 168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKHA----SFGR 241 (329)
T ss_dssp EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECCT----TTTT
T ss_pred EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEecc----ccCC
Confidence 9999954 44443322 1 234889999998 6666667778899999998554422 22211 2246
Q ss_pred CeEEEEEcCCCCcEEEEEE-------CCCeEEEEECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 420 KITGIQFSRDESQRIMITS-------EDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
.+..++|+| + ..+.+.+ .+..|++||..+....... ..+...+.+++++|+|.++++...+++|++|+
T Consensus 242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 4 3444433 3458999997643322222 23566789999999998888888999999999
Q ss_pred CCCC
Q 006424 490 YDEL 493 (645)
Q Consensus 490 ~~~~ 493 (645)
+...
T Consensus 320 ~~~~ 323 (329)
T 3fvz_A 320 LTEK 323 (329)
T ss_dssp EEEC
T ss_pred CCcc
Confidence 8653
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=6.1e-15 Score=166.68 Aligned_cols=200 Identities=8% Similarity=0.130 Sum_probs=143.2
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCC-----cEEEEEEeeCCCCEEEEEeCC---------Cc
Q 006424 288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN-----YVTCVQFNPIDDNYFISGSID---------GK 351 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~-----~v~~l~~~p~~~~~l~s~s~d---------g~ 351 (645)
....++.|+|++ +++++ |++|++||+.++++...+. |.. ....+.|+| |+++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence 346688999998 55554 9999999999998877664 321 224478999 99999998876 56
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc----cCC---------
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG--------- 418 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~--------- 418 (645)
+.+||+.+++...+..+...+...+|||||+.||.+ .++.|++|++.+..... +...+... .+.
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~--lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR--ITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE--CCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE--EcCCCCccceecCcccccccchhc
Confidence 779999999988888888899999999999999888 47899999998765322 11111100 000
Q ss_pred CCeEEEEEcCCCCcEEEEEECC-C-----------------------------------eEEEEECCc---ce--eeEee
Q 006424 419 NKITGIQFSRDESQRIMITSED-S-----------------------------------KLRILDGVD---VI--HKFKG 457 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~d-g-----------------------------------~I~iwd~~~---~~--~~~~~ 457 (645)
.....+.||||| +.|+.++.| + .|++||+.. .. .....
T Consensus 171 ~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 171 SAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred CCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 122458999998 677766432 1 577888765 31 12222
Q ss_pred c------CCCCCeEEEEEecCCCEEEEEeC----CccEEEEeCCCCC
Q 006424 458 L------PKSGSQMSASFTTTGKHIISIGD----DCRVYVWNYDELC 494 (645)
Q Consensus 458 ~------~~~~~i~~v~~sp~~~~l~t~s~----dg~I~iwd~~~~~ 494 (645)
. .+...+..++|+|||+.++.... +..|++||+.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 1 25667899999999997776543 3479999998875
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=2.2e-13 Score=135.75 Aligned_cols=239 Identities=10% Similarity=0.055 Sum_probs=168.3
Q ss_pred cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
..+..+.....+++|+|+|+ +++++..++.|..|+..++
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------------------------------- 60 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------------------------------- 60 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence 33445666788999999998 7888888999999998752
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...+..+...+.++++++++.++.+ ..++.|.+||..+++...... ....+..++++| +++++++.
T Consensus 61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd 132 (296)
T 3e5z_A 61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD 132 (296)
T ss_dssp -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence 3444456677899999999854444 456899999998887654432 123467899999 89888873
Q ss_pred ----e-------------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCce-eeeE
Q 006424 347 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK 407 (645)
Q Consensus 347 ----s-------------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~-~~~~ 407 (645)
+ ..+.|..++.. ++.............++|+|+|+.+++.+.++.|.+|++. .... ....
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 2 13467777766 6666666666778999999999988777778999999997 3332 1111
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEE-ecCCCEEEEEeCCccE
Q 006424 408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV 485 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~-sp~~~~l~t~s~dg~I 485 (645)
. +.. ....+.+++++++| +++++. ++.|.+||... ....+.. +.. +.+++| +|+++.|++++.++ +
T Consensus 212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l 279 (296)
T 3e5z_A 212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-F 279 (296)
T ss_dssp E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-E
T ss_pred E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-E
Confidence 1 111 23456789999998 555544 88999999763 2233333 444 889999 58999999888764 4
Q ss_pred EEEeCCCC
Q 006424 486 YVWNYDEL 493 (645)
Q Consensus 486 ~iwd~~~~ 493 (645)
.-++..+.
T Consensus 280 ~~~~~~~~ 287 (296)
T 3e5z_A 280 WSIETNVR 287 (296)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 44455544
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=6e-13 Score=134.88 Aligned_cols=242 Identities=10% Similarity=0.070 Sum_probs=164.3
Q ss_pred cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 273 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (645)
..+.++...+.+++|+|+|++++++..++.|.+||..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--------------------------------------- 78 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--------------------------------------- 78 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence 34556777789999999999888888999999999876321
Q ss_pred eccCCCceeeccCccCeEEEEEcCCCeE-EEEeCC----CcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424 274 QIEESPLQELHGHKGDVLDLAWSNSNYL-LSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~~~~l-~s~s~d----g~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s 345 (645)
......+...+.++++++++.+ ++...+ +.|.+||.+++.....+. ....+.+++++| +++++++
T Consensus 79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~ 151 (333)
T 2dg1_A 79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT 151 (333)
T ss_dssp ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence 1112245678999999999854 444444 589999998776543332 445789999999 8887776
Q ss_pred EeC------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEE--eecccccc
Q 006424 346 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT 416 (645)
Q Consensus 346 ~s~------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~ 416 (645)
... .+.|..+|..+++...+......+..++|+|+|+.++++ +.++.|.+||+.........+ ........
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 653 356777777766665554444568899999999866655 457899999996421111111 00000000
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecC----CCCCeEEEEEecCCCEEEEEeCCc
Q 006424 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~----~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
...+..++++++| .++++...++.|.+||.... ...+.... +...+.+++|+|+++.|+.++.++
T Consensus 232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1357889999998 67777778899999997532 23333211 111578999999987777666553
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=8e-14 Score=141.37 Aligned_cols=234 Identities=13% Similarity=0.125 Sum_probs=165.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|.++.|++++..++..+.++.++.|. ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~ 37 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT------------------------------------------------AEPW 37 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE------------------------------------------------CEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc------------------------------------------------ccee
Confidence 3467788888887777777788888882 1224
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC----CcEEE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI 354 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d----g~i~v 354 (645)
..+.++...+.+++|++++ .++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence 4555666778999999988 4557778899999999988776554 4667899999999 88888777666 68999
Q ss_pred EeCCCCcEEEee---ccCCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424 355 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425 (645)
Q Consensus 355 wd~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 425 (645)
||..++...... .....+..+.++|+|+++++... .+.|..+|..+..... +. .. ...+..++
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~-----~~~~~~i~ 188 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--II-QN-----ISVANGIA 188 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EE-EE-----ESSEEEEE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--ee-cC-----CCcccceE
Confidence 999887765332 23457899999999987766543 2455555554433221 11 11 13578899
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCc---ceeeE-----eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~-----~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
|+|+|..++++.+.++.|++||... ....+ ........+..++++++|+++++...++.|.+||.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 9999833455556688999999742 12111 111112467889999999988888888999999974
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=2.1e-13 Score=139.93 Aligned_cols=268 Identities=10% Similarity=0.045 Sum_probs=169.8
Q ss_pred ceeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCC
Q 006424 280 LQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDN 341 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~ 341 (645)
+..+..+..+ .++|+|++ +++++. .+++|.+||..+++.+..+. +......++++| +++
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~ 120 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGK 120 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSS
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCC
Confidence 3445545555 89999998 677665 36789999999988887764 234567899999 999
Q ss_pred EEEEEeC--CCcEEEEeCCCCcEEEe-eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 342 YFISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 342 ~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
+|+++.. ++.|.+||+.+++.+.. ...... ..+.+.|++ ..+++.+.||.+.+|+....................
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 9988874 57899999999988765 554433 335667766 677888899999999986532222111100000001
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce----eeEeecC----C----CCCeEEEEEecCCCEEEEEeC----
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----K----SGSQMSASFTTTGKHIISIGD---- 481 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~----~----~~~i~~v~~sp~~~~l~t~s~---- 481 (645)
..+ ..+.+++++ ..++..+.++.|.++|..... ..+.... . ......++|+|+++.++++..
T Consensus 200 ~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 200 DDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 111 233346666 566667788999999975321 1111100 0 011123789999888877643
Q ss_pred -------CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccccc--CC--
Q 006424 482 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--AP-- 550 (645)
Q Consensus 482 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~-- 550 (645)
.+.|.+||+.+.+.... +.-.+ ..+++|+|||.+|+..+. ..+.+|+.... ..
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~-----------i~~~~-p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVAR-----------IPGRD-ALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLR 341 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEE-----------EECTT-CCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEE
T ss_pred cccccCCCceEEEEECCCCcEEEE-----------EecCC-eeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeE
Confidence 34899999987742211 11122 567888888888886653 55667766443 22
Q ss_pred ccCCCCccccCccccCCCC
Q 006424 551 WIRDSERFSLGSWFSNDGP 569 (645)
Q Consensus 551 ~~~~~~~~~~~~~fs~dg~ 569 (645)
.+...+.....++|+|||+
T Consensus 342 ~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 342 TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTSCSSEEEEEECCCSC
T ss_pred EeccCCCCcEEEEecCCCC
Confidence 2234455667788999986
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.2e-13 Score=151.91 Aligned_cols=242 Identities=12% Similarity=0.124 Sum_probs=166.7
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+|...+..++|||||++||.++.++ .|++||+.++...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------------------------------------- 164 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------------------------------------- 164 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 4556789999999999999776543 8999999874321
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCc----------------EEEEecCCCeE--EEEec---CCCcE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV 330 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~----------------I~iwd~~~~~~--~~~~~---~~~~v 330 (645)
.... ....+..++|+||+ .|+.++.++. |++|++.+++. ...+. +...+
T Consensus 165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 1111 11236779999998 7888877766 99999988762 22222 45568
Q ss_pred EEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC------C--cEEEeeccCCCeEEEEEccCCCEEEEEecC----CeE
Q 006424 331 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC 393 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~------~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i 393 (645)
..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|
T Consensus 236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence 8999999 9998887765 56899999976 4 45556666655554 488999988877653 369
Q ss_pred EEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe--EEEEECCcc--eeeEeecCCCCCeEEEE
Q 006424 394 HFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDGVDV--IHKFKGLPKSGSQMSAS 468 (645)
Q Consensus 394 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~--I~iwd~~~~--~~~~~~~~~~~~i~~v~ 468 (645)
.+||+.+.... ...+..+.. ...+..+.|++++ .++++...|+. |++||.... ...+.. +.+.+..+.
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~ 386 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEHE----KDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS 386 (710)
T ss_dssp EEEETTSCCGGGCEEEECCCS----SCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred EEEeCCCCCcccceeccCCCC----CCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence 99998765421 111111110 1357788998765 78888888874 566776332 333333 466788899
Q ss_pred EecCCCEEEEE-e---CCccEEEEeCCCCC
Q 006424 469 FTTTGKHIISI-G---DDCRVYVWNYDELC 494 (645)
Q Consensus 469 ~sp~~~~l~t~-s---~dg~I~iwd~~~~~ 494 (645)
++|+++.++.. + ..++|+.||+.+++
T Consensus 387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 99998766643 2 34799999998765
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=9.7e-13 Score=134.09 Aligned_cols=203 Identities=10% Similarity=0.027 Sum_probs=136.2
Q ss_pred cCeEEEEEcCCC-eEEEEeCC---C--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC------------
Q 006424 288 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------ 349 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s~d---g--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d------------ 349 (645)
..+..++|+|+| .|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467889999998 67766543 2 48888998888777666555 99999999 89888887642
Q ss_pred ---------------CcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCC-------eEEEEEecCCceeee
Q 006424 350 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE 406 (645)
Q Consensus 350 ---------------g~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg-------~i~iwd~~~~~~~~~ 406 (645)
..|++||+.+++. ..+.. . .+..+.|+|+| .++++..++ ...+|.+.+... .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence 5699999998887 44444 4 78899999999 777776542 445555543322 1
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--------CeEEEEECCcceeeEeecCCCCCeEE-EEEecCCCEEE
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII 477 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~-v~~sp~~~~l~ 477 (645)
.+... ..+..+ +|+| +.|+.++.+ ..|.+|| ......+ ...+...+.. +.|+ ++ +++
T Consensus 212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence 11111 233443 8998 566655543 4788888 3222211 2234566776 8999 88 999
Q ss_pred EEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424 478 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 523 (645)
Q Consensus 478 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~ 523 (645)
+++.++.++|| ++++.. .. ....++.+..++|+|
T Consensus 278 ~~~~~~~~~l~-~~~g~~----------~~-~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEI----------KP-IAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEETTEEEEE-EESSSE----------EE-EECSSSEEEEEEESS
T ss_pred EEecCCcEEEE-EcCCce----------EE-EecCCCeEEeeeeeC
Confidence 99999999999 874311 01 122356677788888
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=4.6e-13 Score=131.21 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=167.8
Q ss_pred cEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 202 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 202 ~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
...+++++++|++++ +.+.++.|.+|+..+... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------------------------------~ 59 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------------------------T 59 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------------------------------E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------------------------------c
Confidence 678999999999777 547788999998654210 0
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
.....+...+.++++++++.++.+..++.|.+||.......... .....+.+++++| +++++++...++.|.+|+..+
T Consensus 60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence 00012334577899998875555555889999998765443222 2335789999999 888777777788999998766
Q ss_pred CcEEEe-eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 360 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 360 ~~~~~~-~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
...... ......+.+++++++|+.+++...++.|.+||..+...... ... ....+.+++++++| .++++..
T Consensus 139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~-----~~~~p~~i~~d~~g-~l~v~~~ 210 (270)
T 1rwi_B 139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFT-----DITAPWGIAVDEAG-TVYVTEH 210 (270)
T ss_dssp CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCS-----SCCSEEEEEECTTC-CEEEEET
T ss_pred ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--ccc-----CCCCceEEEECCCC-CEEEEEC
Confidence 544332 22334678999999998776666788999999876543221 011 12568899999998 6777777
Q ss_pred CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 439 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 439 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.++.|.+||............+...+.+++++++|+++++...+++|+++++...
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 7899999997643333222223357899999999998888889999999998765
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=2.9e-12 Score=138.43 Aligned_cols=323 Identities=13% Similarity=0.051 Sum_probs=198.2
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccC
Q 006424 210 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 289 (645)
Q Consensus 210 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 289 (645)
|.+.++++...+++|.++|..++ +.+..+. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~---------------------------------------------~v~~~i~-~g~~ 198 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY---------------------------------------------EIKTVLD-TGYA 198 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC---------------------------------------------CEEEEEE-CSSC
T ss_pred CCceEEEEeCCCCeEEEEECCCC---------------------------------------------eEEEEEe-CCCC
Confidence 44557778888999999999873 3333443 2234
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEecCCCcEEEEEEe----eCCCCEEEEEeC-CCcEEEEeCCCCc
Q 006424 290 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR 361 (645)
Q Consensus 290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~v~~l~~~----p~~~~~l~s~s~-dg~i~vwd~~~~~ 361 (645)
+..+.|+|++ ++++++.|+.|.+||+. +++.+..+........++|+ | +++++++++. +++|.++|..+.+
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence 6689999998 78889999999999995 88888888766678899999 7 8888777665 5899999999888
Q ss_pred EEEeecc------------CCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 362 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 362 ~~~~~~~------------~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
.+..... ...+..+..++++..+++. ..+|.|.++|......... ..... .....++.|+|
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~~-----~~~~~d~~~~p 351 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEISA-----ERFLHDGGLDG 351 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEEC-----CSSEEEEEECT
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeeec-----cccccCceECC
Confidence 7654321 1257788889887655544 5569999999876542211 11111 24567889999
Q ss_pred CCCcEEEEEECCCeEEEEECCcceee--Eee---cCCCCCeEEEEEecCCCEE-EEEe-CCccEEEEeCCCCCcCCCccc
Q 006424 429 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHI-ISIG-DDCRVYVWNYDELCFPSSKQK 501 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~---~~~~~~i~~v~~sp~~~~l-~t~s-~dg~I~iwd~~~~~~~~~~~~ 501 (645)
+|..++++...++.|.++|..+.... ... ..|.+....+ ++|++..+ +++. .++.|.++|.++...... .
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~--~ 428 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--A 428 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--B
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc--c
Confidence 98544455556899999998754322 221 1233222222 58875544 4443 468999999987421100 0
Q ss_pred CCcceeeeeecCCcEEEEecCCCCccccccCCCC----ccccCcccccccc-----C---C--------ccCCCCccccC
Q 006424 502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLET-----A---P--------WIRDSERFSLG 561 (645)
Q Consensus 502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~-----~---~--------~~~~~~~~~~~ 561 (645)
-.....+.... +..+.+..+|++..||...... ....+.+.+.... . . .+......+..
T Consensus 429 ~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (567)
T 1qks_A 429 WKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ 507 (567)
T ss_dssp TSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred CEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEe
Confidence 00111111111 1112344555555555322110 0111222222111 0 0 01123456788
Q ss_pred ccccCCCCCCcCCCC----CCCcCCCCCCccC
Q 006424 562 SWFSNDGPCRGSATW----PAEKLPLWDVTID 589 (645)
Q Consensus 562 ~~fs~dg~~l~s~s~----~d~~i~iWd~~~~ 589 (645)
..|++||+.+-.+.| .++.|.|+|..++
T Consensus 508 ~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 508 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp EEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred eeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 899999996655544 2578888888877
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=1.6e-13 Score=142.41 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=155.5
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc-eEEecccCCCcceeecCCCceeccCCCceee
Q 006424 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 283 (645)
Q Consensus 205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (645)
.+.|+|||++|+.++.++.|++||+.++........+... ...+ .+.+... .....+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~----~~~g~~l~~~~~------------------~~~~~~ 142 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW----KGYGTWVANSDC------------------TKLVGI 142 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTS------------------SEEEEE
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc----CCCCCEEEeccC------------------Cccccc
Confidence 4789999999999999999999999876543322211110 0000 0000000 000000
Q ss_pred ccCccCeEEEEEcCCC-eEEEE-----eCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC------Cc
Q 006424 284 HGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------GK 351 (645)
Q Consensus 284 ~~h~~~V~~l~~s~~~-~l~s~-----s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d------g~ 351 (645)
....+.|+|++ .++.+ ..+..|.+||+.+++......+...+..+.|+|.++..|+.++.+ ..
T Consensus 143 -----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 143 -----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp -----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred -----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCce
Confidence 00113467776 44332 466789999999988777777777899999998446656665543 36
Q ss_pred EEEEeCCCCcEEEeecc--CCCeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424 352 VRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
|.+||+.++....+..+ ...+..+.|+|+|+.|+.++.+ +.|++||+.+...... .... ... +
T Consensus 218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~--------~~~-~ 287 (396)
T 3c5m_A 218 MWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMP--------PCS-H 287 (396)
T ss_dssp CEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECC--------SEE-E
T ss_pred EEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCC--------CCC-C
Confidence 89999987766655443 2357889999999988777544 4499999987654221 1111 123 8
Q ss_pred EEcC-CCCcEEEEEE----------------CCCeEEEEECCcc-eeeEeecCCCC-----------CeEEEEEecCCCE
Q 006424 425 QFSR-DESQRIMITS----------------EDSKLRILDGVDV-IHKFKGLPKSG-----------SQMSASFTTTGKH 475 (645)
Q Consensus 425 ~~s~-~g~~~l~~~s----------------~dg~I~iwd~~~~-~~~~~~~~~~~-----------~i~~v~~sp~~~~ 475 (645)
.|+| +| .++++++ .+..|++||.... ...+.. +.. .+..++|+|+|+.
T Consensus 288 ~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 288 LMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp EEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCe
Confidence 8999 98 5676654 3478999997643 223333 222 2566789999999
Q ss_pred EEEEeC-CccEEEE--eCCCC
Q 006424 476 IISIGD-DCRVYVW--NYDEL 493 (645)
Q Consensus 476 l~t~s~-dg~I~iw--d~~~~ 493 (645)
|+.++. ++...+| ++.++
T Consensus 365 l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp EEEEECTTSSCEEEEEECCTT
T ss_pred EEEEecCCCCceEEEEEEccc
Confidence 887765 4554444 55554
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=2.2e-12 Score=130.50 Aligned_cols=235 Identities=6% Similarity=-0.017 Sum_probs=164.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
.....+.+. ++++.++...++.|.+||..++ +.+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---------------------------------------------~~~ 77 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---------------------------------------------KEV 77 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---------------------------------------------CEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECccc---------------------------------------------EEE
Confidence 346777774 4556666677899999999873 333
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEe-CCCcEEEEecCCCeEEEEecCCC------cEEEEEEeeCCCCEEEEEe-CCCcE
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV 352 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~------~v~~l~~~p~~~~~l~s~s-~dg~i 352 (645)
..+. .......+++++++.++.+. .++.|.+||..+++....+.... ....+++ . ++.++++.. .++.|
T Consensus 78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence 4443 34567889998888666655 89999999999999887775443 5667777 3 555555443 48899
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC----------CeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
.++|+.+++.............+.++|+|++++++..+ +.|.++|..+.+.. ..+.... +....
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~-~~~~~~~-----g~~p~ 228 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE-KQFKFKL-----GDWPS 228 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE-EEEECCT-----TCCCE
T ss_pred EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE-EEEecCC-----CCCce
Confidence 99999998877765556667889999999876666544 78999999876643 2232221 24678
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceee-Ee-ecCCCCCeEEEEEec-CCCEEEEE----eCCccEEEEeCCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTT-TGKHIISI----GDDCRVYVWNYDELC 494 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~-~~~~~~~i~~v~~sp-~~~~l~t~----s~dg~I~iwd~~~~~ 494 (645)
.++++|++ ..++++.. .|.+||....... .. .........+++++| ++.+.++. ..++.|.+||.+ ++
T Consensus 229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 99999987 56666554 8999997643221 11 111145788999999 55566665 578999999987 53
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=2.3e-13 Score=152.68 Aligned_cols=242 Identities=12% Similarity=0.059 Sum_probs=163.9
Q ss_pred cccCcEEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~-----sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+|...+.+++|||||++|| .|+.+..|++||+.++....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------ 161 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------ 161 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence 5667899999999999998 44455789999998743210
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCc-------------EEEEecCCCeE--EEEec---CCCcEEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV 333 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~-------------I~iwd~~~~~~--~~~~~---~~~~v~~l 333 (645)
...+.+. ....++|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+
T Consensus 162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 0011111 12578999998 7888888776 99999987762 22232 44678899
Q ss_pred EEeeCCCCEEEEEeCCC----cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCcee-
Q 006424 334 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK- 404 (645)
Q Consensus 334 ~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~- 404 (645)
.|+| ++++|+.++.++ .|++||..++....+..+...+....+ ++|. ++..+. ++.|.+||+.+....
T Consensus 233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999 999888877666 688888777777777666666666666 6677 555443 578999998765421
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cc-eeeEeecCCCCCeEEEEEecCCCEEEEEe-
Q 006424 405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV-IHKFKGLPKSGSQMSASFTTTGKHIISIG- 480 (645)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s- 480 (645)
...+..+. ....+..++|+ ++ .++++...|+..++|... .. ...+.. ...+.+..++++|+++.++...
T Consensus 310 ~~~l~~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 310 WKEIVPED----SSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp CEEEECCC----SSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred CeEEecCC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence 11111111 12457788888 43 788899999988887543 21 222222 1255677788999998776332
Q ss_pred ---CCccEEEEeCCCCC
Q 006424 481 ---DDCRVYVWNYDELC 494 (645)
Q Consensus 481 ---~dg~I~iwd~~~~~ 494 (645)
..++|++||+.+++
T Consensus 383 s~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTEEEEEEEEETTTCC
T ss_pred CCCCCCEEEEEECCCCc
Confidence 35889999998875
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=3.3e-11 Score=119.57 Aligned_cols=239 Identities=8% Similarity=0.050 Sum_probs=169.5
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+..+...+.+++++++|+++++...++.|.+||.. +....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~--------------------------------------- 49 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE--------------------------------------- 49 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence 44566789999999999988877778899999876 32110
Q ss_pred cCCCceeeccCccCeEEEEEcCCCeEE-EEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.....+...+.++++++++.++ +...++.|..||.. ++. ..+. ....+.++++.| +++++++...++.
T Consensus 50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 121 (299)
T 2z2n_A 50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR 121 (299)
T ss_dssp -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence 0111234678899999888544 44457889999986 433 2222 445789999998 8888887777889
Q ss_pred EEEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424 352 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429 (645)
Q Consensus 352 i~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 429 (645)
|..||. +++..... .....+..++++++|+..++...++.|..||. +..... ..... ....+.++++.++
T Consensus 122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~----~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIPT----PASGPVGITKGND 193 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECSS----TTCCEEEEEECTT
T ss_pred EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCCC----CCCcceeEEECCC
Confidence 999998 55554432 23457899999999987777667789999998 443321 11111 1356889999999
Q ss_pred CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
| .++++...++.|.+||.......+........+.+++++++|++.++...++.|..||..
T Consensus 194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 7 666666668899999984333333333345678999999999977776678899999983
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=1.1e-12 Score=133.74 Aligned_cols=222 Identities=11% Similarity=0.122 Sum_probs=147.0
Q ss_pred CcEEEEEECCCCCEEEEEeCC---Cc--EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 201 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~D---g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
..+.+++|||||++|+.++.+ +. |.+|++.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~------------------------------------------ 96 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS------------------------------------------ 96 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE------------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc------------------------------------------
Confidence 458899999999999988754 33 6677776522
Q ss_pred cCCCceeeccCccCeEEEEEcCCC-eEEEEeC---------------------------CCcEEEEecCCCeEEEEecCC
Q 006424 276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH 327 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~---------------------------dg~I~iwd~~~~~~~~~~~~~ 327 (645)
...+..+.. +..++|+|++ .|+.++. ...|.+||+.+++.+..+...
T Consensus 97 ----~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 97 ----SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp ----EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred ----eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 122222233 8999999997 6776653 257999999988873443323
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCC-------cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC--------Ce
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT 392 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d--------g~ 392 (645)
.+..+.|+| ++ +++++..++ ...+|.+.+++...+..+ ..+..+ +|+|+.|+.++.+ ..
T Consensus 172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence 788999999 88 777776542 334443336666555554 455544 9999998887754 36
Q ss_pred EEEEEecCCceeeeEEeeccccccCCCCeEE-EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 471 (645)
Q Consensus 393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp 471 (645)
|.+|| +.... . +. ..+...+.. +.|+ ++ ++++++.++.+++| +.... ......+...|.+++|+|
T Consensus 246 l~~~d--~~~~~--~--l~---~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 246 LYIYD--GKEVM--G--IL---DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEEC--SSCEE--E--SS---TTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS
T ss_pred EEEEC--CCceE--e--cc---ccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC
Confidence 77777 33221 1 11 112356775 8999 75 88889999999999 75321 122223467789999999
Q ss_pred CCCEEEEEeCCccE-EEEeCC
Q 006424 472 TGKHIISIGDDCRV-YVWNYD 491 (645)
Q Consensus 472 ~~~~l~t~s~dg~I-~iwd~~ 491 (645)
.++++++.++.. .+|.++
T Consensus 312 --~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 312 --IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --SEEEEEECSSSCCEEEEES
T ss_pred --cEEEEEcCCCChHHheEeC
Confidence 677777777665 777765
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.53 E-value=3.4e-13 Score=150.50 Aligned_cols=204 Identities=9% Similarity=-0.006 Sum_probs=135.2
Q ss_pred CccCeEEEEEcCCC-eEEEEeCC----------CcEEEEecCC------CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~d----------g~I~iwd~~~------~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
|...+.+++|+|+| .|++++.+ ..|++||+.+ ++..... .+...+..++|+| +++.|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 66788999999998 78887776 5899999988 6665555 5667888899999 999998887
Q ss_pred CCC--------cEEEEeCC-CC---cEEEeec-cCCCeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeecc
Q 006424 348 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 348 ~dg--------~i~vwd~~-~~---~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~ 412 (645)
.++ .|++||+. ++ +...+.. +...+..+.|+|||++++++..+| .|.+||+.+...... ...+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccccc
Confidence 553 79999998 56 5555444 467899999999999888888888 555555544432211 11110
Q ss_pred cccc--CCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCcceeeEeecCCCCCeEEE-EEecCCCEEEEEeCCc--cE
Q 006424 413 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--RV 485 (645)
Q Consensus 413 ~~~~--~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~t~s~dg--~I 485 (645)
.... -...+..++|+|++ .++++++. +.++|| |..... ......+...+..+ +++.+.-++++++.+. .|
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 0000 00114578899987 78888888 999999 544222 12222345566666 4443333444455554 56
Q ss_pred EEEeCCCCC
Q 006424 486 YVWNYDELC 494 (645)
Q Consensus 486 ~iwd~~~~~ 494 (645)
++||+.+++
T Consensus 363 ~~~d~~~g~ 371 (662)
T 3azo_A 363 VELDTVTGR 371 (662)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 666766664
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=4.3e-12 Score=125.54 Aligned_cols=239 Identities=9% Similarity=0.108 Sum_probs=160.4
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCCEEEEEeC-CCcEEEE
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW 355 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vw 355 (645)
++-..+.++++++++ .+++.+.++.|.+||.. ++.+..+. +...+.++++.+.+++++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456778999999987 56666788999999987 65665553 23468899995326666665533 7899999
Q ss_pred eCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 356 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 356 d~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
|. +++..... .....+..++++|+|+.+++...++.|.+||..... ...+... .+...+.+++++++| .+
T Consensus 106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~--~~~~~~~----~~~~~p~~i~~~~~g-~l 177 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGCS----KHLEFPNGVVVNDKQ-EI 177 (286)
T ss_dssp CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE--EEEEECT----TTCSSEEEEEECSSS-EE
T ss_pred CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE--EEEeCCC----CccCCcEEEEECCCC-CE
Confidence 94 45544432 234578999999999977777778999999965432 2222111 123468899999997 67
Q ss_pred EEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc-cEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424 434 IMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSKQKNSVRSCEHFF 511 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 511 (645)
+++...++.|++||.... ...+....+...+.+++++++|+++++...++ .|.+||..... . .......
T Consensus 178 ~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~-~--------~~~~~~~ 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL-I--------SALESKV 248 (286)
T ss_dssp EEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE-E--------EEEEESS
T ss_pred EEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE-E--------EEEcccC
Confidence 777778999999997532 22332222235789999999999988888776 99999964321 1 0110101
Q ss_pred cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424 512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 545 (645)
Q Consensus 512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~ 545 (645)
......+++++|+|..+++ +.+ ..+.+|+.
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~---~~v~v~~~ 278 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKD---YRLYIYRY 278 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETT---TEEEEEEC
T ss_pred CCCcceeEEECCCCcEEEE-CCC---CeEEEEEc
Confidence 1223568888898875554 333 34555654
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=1.3e-11 Score=123.68 Aligned_cols=246 Identities=12% Similarity=0.144 Sum_probs=167.7
Q ss_pred ccCcEEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424 199 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~s-------gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (645)
.-....+++|+++|+++++ +..++.|.+||..++......
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------------------------------- 62 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------------------------------- 62 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---------------------------------
Confidence 3445789999999988888 577889999997664321000
Q ss_pred ceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEE-ec-----CCCcEEEEEEeeCCCCEEE
Q 006424 272 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~-~~-----~~~~v~~l~~~p~~~~~l~ 344 (645)
.....++...+.+++++++ +.++.++..+.|.+||.. ++.... .. ....+.++++++ ++++++
T Consensus 63 --------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v 132 (314)
T 1pjx_A 63 --------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI 132 (314)
T ss_dssp --------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred --------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence 0001224567889999998 877767666689999998 766544 32 123588999999 888877
Q ss_pred EEeCC---------------CcEEEEeCCCCcEEEeeccCCCeEEEEEc----cCCCEEEEE-ecCCeEEEEEec-CCce
Q 006424 345 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL 403 (645)
Q Consensus 345 s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~s----p~g~~l~~g-~~dg~i~iwd~~-~~~~ 403 (645)
+...+ +.|..||.. ++.............++++ |+++.++++ ..++.|.+||.. ....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 76654 568888876 6555554444567889999 999776665 467899999986 3322
Q ss_pred eeeEEeeccccccCC-CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEE-EE
Q 006424 404 KLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII-SI 479 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~-t~ 479 (645)
..... +.. ...+. ..+..++++++| .++++...++.|.+||..+ ....+.. +...+.+++|+|+++.|+ +.
T Consensus 212 ~~~~~-~~~-~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 212 ENKKV-WGH-IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEEE-EEE-CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEE
T ss_pred ccceE-EEE-CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEe
Confidence 11111 111 11111 457889999998 7777777889999999762 2333333 446789999999999555 44
Q ss_pred eCCccEEEEeCCCC
Q 006424 480 GDDCRVYVWNYDEL 493 (645)
Q Consensus 480 s~dg~I~iwd~~~~ 493 (645)
..++.|..|++...
T Consensus 287 ~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 287 HENNAVWKFEWQRN 300 (314)
T ss_dssp TTTTEEEEEECSSC
T ss_pred CCCCeEEEEeCCCC
Confidence 55689999998753
No 188
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=8.1e-12 Score=126.40 Aligned_cols=232 Identities=11% Similarity=0.075 Sum_probs=156.7
Q ss_pred ccCeEEEEEcCCC-eEEEEeCC------------------------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCC
Q 006424 287 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID 339 (645)
Q Consensus 287 ~~~V~~l~~s~~~-~l~s~s~d------------------------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~ 339 (645)
-+.+.+++++++| .+++.+.+ +.|.+||..+++.+..+. +-..+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4679999999998 45555555 379999999999887775 335789999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCC--cEEEe---------eccCCCeEEEEEcc-CCCEEEEEe-cCCeEEEEEecCCceeee
Q 006424 340 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE 406 (645)
Q Consensus 340 ~~~l~s~s~dg~i~vwd~~~~--~~~~~---------~~~~~~v~~l~~sp-~g~~l~~g~-~dg~i~iwd~~~~~~~~~ 406 (645)
++++++...++.|++||.... .+..+ ..+-.....++++| ++.++++.+ .++.|++|+.... .. .
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~-~ 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FV-T 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EE-E
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EE-E
Confidence 998888888899999998765 33333 23334688999999 787777775 6899999995433 22 2
Q ss_pred EEeecccc----ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEE-
Q 006424 407 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI- 479 (645)
Q Consensus 407 ~~~~~~~~----~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~- 479 (645)
.+...+.. ..+-.....++++|++..++++...++.|++||.. +....+....+...+.+++|+| +..+++.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 22111110 11123478999999843788888889999999976 3344444444567788999999 4333333
Q ss_pred ------eCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424 480 ------GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 480 ------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~ 529 (645)
..+..|++||+.+++........ -........++++|+|..++
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV-------RKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS-------SSCCSSEEEEEECTTSEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC-------CCccCCeeEEEECCCCCEEE
Confidence 34558999999877432211000 01122356788888884333
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.50 E-value=1.3e-11 Score=138.84 Aligned_cols=201 Identities=9% Similarity=0.031 Sum_probs=136.6
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCC-C----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc-------
Q 006424 285 GHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK------- 351 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~s~s~d-g----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~------- 351 (645)
+|...+..++||||| +|+.++.+ | .|++||+.+++.+........+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 355578899999998 66655443 3 89999999998876433223367899999 9999999888766
Q ss_pred ---------EEEEeCCCCc---EEEee--ccCCCeEEEEEccCCCEEEEEec-----CCeEEEEEecC------Cceeee
Q 006424 352 ---------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE 406 (645)
Q Consensus 352 ---------i~vwd~~~~~---~~~~~--~~~~~v~~l~~sp~g~~l~~g~~-----dg~i~iwd~~~------~~~~~~ 406 (645)
|++|++.++. ..... .+...+..+.|+|||++|+.++. +..|.+||+.+ ......
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998765 22222 24556789999999999988765 56899999976 322222
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
.+..+. ..+.. .|+|+|..+++.+..+ +.|.+||+.... ..+..+.....+..++|++++.++++.
T Consensus 281 ~l~~~~------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 281 KLIDNF------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEECSS------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred EeeCCC------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 222211 23333 4888874444444433 379999987532 333332222367889999888888888
Q ss_pred eCCcc--EEEEeCCCC
Q 006424 480 GDDCR--VYVWNYDEL 493 (645)
Q Consensus 480 s~dg~--I~iwd~~~~ 493 (645)
..|+. |++|++.++
T Consensus 354 ~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATG 369 (710)
T ss_dssp EETTEEEEEEEETTTC
T ss_pred EECCEEEEEEEECCCC
Confidence 88884 566676554
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=1.7e-11 Score=120.40 Aligned_cols=212 Identities=11% Similarity=-0.037 Sum_probs=153.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCc-cC
Q 006424 211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD 289 (645)
Q Consensus 211 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~ 289 (645)
.+++|++++.|+.|.+||.+++ +.+..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---------------------------------------------~~~w~~~~~~~~~ 38 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---------------------------------------------EIVWEYPLEKGWE 38 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---------------------------------------------EEEEEEECCTTCC
T ss_pred CCcEEEeeCCCCEEEEEECCCC---------------------------------------------eEEEEeCCCccCC
Confidence 4679999999999999998773 3345555554 46
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCcEEEee
Q 006424 290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~ 366 (645)
+.++.++|+|.++. +.++.|..||. +++.+..+.. ...+.++.+.| +++++++.+. ++.|..+|.....+..+.
T Consensus 39 ~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~ 115 (276)
T 3no2_A 39 CNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTE 115 (276)
T ss_dssp CCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred CcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence 88899999984444 56788999999 7988888864 35788999999 9999999887 778888887443333322
Q ss_pred ------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 367 ------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 367 ------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.+......+.+.++|+++++...++.|..||.. ++.. ..+... ....++...++| ..+++++.+
T Consensus 116 ~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~-w~~~~~-------~~~~~~~~~~~g-~~~v~~~~~ 185 (276)
T 3no2_A 116 FETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL-NSVKLS-------GTPFSSAFLDNG-DCLVACGDA 185 (276)
T ss_dssp ECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEECS-------SCCCEEEECTTS-CEEEECBTT
T ss_pred ccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE-EEEECC-------CCccceeEcCCC-CEEEEeCCC
Confidence 111245566788999999999999999999988 5442 222222 345567788887 788888888
Q ss_pred CeEEEEECCcceeeEeecCC------CCCeEEEEEecCCCEEEEEe
Q 006424 441 SKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 441 g~I~iwd~~~~~~~~~~~~~------~~~i~~v~~sp~~~~l~t~s 480 (645)
+.|..+|..+.......... ...+.++...++|..+++..
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 89999997744333332111 22377888889999888874
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=5.1e-12 Score=141.67 Aligned_cols=195 Identities=12% Similarity=0.055 Sum_probs=130.9
Q ss_pred cCccCeEEEEEcCCC-eEE-----EEeCCCcEEEEecCCCeEE-EEecCCCcEEEEEEeeCCCCEEEEEeCCCc------
Q 006424 285 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------ 351 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~-----s~s~dg~I~iwd~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~------ 351 (645)
+|...+..++||||| +|+ .|+.+.+|++||+.+++.+ ...-.......++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 466679999999998 555 2333468999999998865 2111111126789999 9999999988776
Q ss_pred -------EEEEeCCCCc----EEE-eeccCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccc
Q 006424 352 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 352 -------i~vwd~~~~~----~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
|++|++.++. ++. ...+...+.++.|+|||++|+.++.++ .|.+++..+... ..+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~--- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVKGV--- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEECS---
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeecCC---
Confidence 9999998765 222 223446788999999999998877665 556665433322 2222221
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEE---CCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424 416 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 488 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw 488 (645)
..+....+ ++| .+++.+. .++.|.+||+.... ..+........+..++|+ ++.++++...|+..+||
T Consensus 272 ---~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 272 ---GAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ---SCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ---CceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34455556 676 4555544 25899999986432 333332224567888998 77888899999988888
Q ss_pred eCC
Q 006424 489 NYD 491 (645)
Q Consensus 489 d~~ 491 (645)
.++
T Consensus 346 ~~~ 348 (695)
T 2bkl_A 346 VAT 348 (695)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=1.8e-11 Score=121.74 Aligned_cols=230 Identities=11% Similarity=-0.008 Sum_probs=157.5
Q ss_pred CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
..+..+..+.....+++|+|++ .++++..++.|..||..++ ...+ .+...+.+++++| +++++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 4455666667778899999986 4778888999999999887 4444 4666799999999 8888877776789999
Q ss_pred EeCCCCcEEEeecc-----CCCeEEEEEccCCCEEEEE----ec-------------CCeEEEEEecCCceeeeEEeecc
Q 006424 355 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIVG----SI-------------TGTCHFYKASGNDLKLEKVDFHD 412 (645)
Q Consensus 355 wd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l~~g----~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 412 (645)
||..+++...+... ...+..++++|+|+++++. +. .+.|..++.. ... .... .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~-~- 169 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI-R- 169 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE-C-
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee-c-
Confidence 99988776554321 2346789999999988763 21 2345555443 221 1111 1
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc-----eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV-----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 486 (645)
Q Consensus 413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~-----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~ 486 (645)
.......++|+|+| ..+++.+.++.|++|+.. .. ...+ ..+...+.+++++++|+++++. ++.|.
T Consensus 170 ----~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 170 ----DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ----CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ----CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 12457899999998 566777788999999975 21 1222 2245567789999999977766 88999
Q ss_pred EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEec-CCCCccccccCCCCc
Q 006424 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW-PGIGTEQKSLCSSSL 536 (645)
Q Consensus 487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~-s~~~~~l~~~~~~~~ 536 (645)
+||.+.. ... . .-.+.+ +..++| .|++..|+..+.+.+
T Consensus 241 ~~~~~g~-~~~---------~-~~~~~~-~~~~~f~~~d~~~L~v~t~~~l 279 (296)
T 3e5z_A 241 VLTPDGD-ELG---------R-VLTPQT-TSNLCFGGPEGRTLYMTVSTEF 279 (296)
T ss_dssp EECTTSC-EEE---------E-EECSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred EECCCCC-EEE---------E-EECCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence 9997632 110 0 011233 556677 578888887666543
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=6.5e-11 Score=119.60 Aligned_cols=222 Identities=9% Similarity=0.045 Sum_probs=152.0
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 367 (645)
.....+.+..+..+++...++.|.+||..+++.+..+........+++++ ++.++++...++.|.+||..++++.....
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34566777654456666678999999999999988887667889999988 77544444478999999999988775444
Q ss_pred cCC------CeEEEEEccCCCEEEEEe--cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 368 VRD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 368 ~~~------~v~~l~~sp~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
... ....+++ ++..++++. .++.|.++|+.+..... .+... .....+.++|+| ++++++..
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~-~i~~g-------~~p~~i~~~~dG-~l~v~~~~ 191 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD-ELTIG-------IQPTSLVMDKYN-KMWTITDG 191 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE-EEECS-------SCBCCCEECTTS-EEEEEBCC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE-EEEcC-------CCccceEEcCCC-CEEEEECC
Confidence 333 5667777 345555555 48899999998876432 22221 335678899998 56666554
Q ss_pred C----------CeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424 440 D----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 507 (645)
Q Consensus 440 d----------g~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 507 (645)
+ +.|.++|..+... .+... .......++|+|++++|+++.. .|++||..+++........
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~----- 263 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLE----- 263 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBC-----
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeec-----
Confidence 4 7899999874432 22221 2346899999999999988755 8999999877542111000
Q ss_pred eeeecCCcEEEEecCCCCccccccC
Q 006424 508 EHFFSEGVSVAVQWPGIGTEQKSLC 532 (645)
Q Consensus 508 ~~~~~~g~~~~v~~s~~~~~l~~~~ 532 (645)
. .......++++|++..|+...
T Consensus 264 --~-~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 264 --F-RDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --C-CSSCEEEEEECTTTCCEEEEE
T ss_pred --C-CCCceEEEEEcCCCCeEEEEc
Confidence 0 023456788888666666543
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=2.9e-10 Score=112.72 Aligned_cols=237 Identities=8% Similarity=0.036 Sum_probs=163.9
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
+...+.+++++++|.++++...++.|..||... ...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~------------------------------------------- 90 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK------------------------------------------- 90 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence 346799999999999888877788899998652 110
Q ss_pred CceeeccCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
...+......+.++++.+++.+ ++...++.|..||. +++..... .....+.++++.+ +++++++...++.|..|
T Consensus 91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI 167 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence 0011123456888999988844 44556789999998 55544322 2345789999998 88887777667899999
Q ss_pred eCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 356 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 356 d~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
|. +++...+ ......+.+++++++|+..++...++.|..||. +.... .+... .....+.+++++++| .+
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~~~----~~~~~~~~i~~~~~g-~l 238 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--EFKIP----TPNARPHAITAGAGI-DL 238 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEECS----STTCCEEEEEECSTT-CE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--EEECC----CCCCCceeEEECCCC-CE
Confidence 99 6665543 233456889999999987666666889999998 44432 12121 123578899999997 56
Q ss_pred EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+++...++.|..||.......+....+...+.++++ +++.+.++.+ .+.|..++.++.
T Consensus 239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 666557899999997543344433334567899999 8888777665 566777776654
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=3.4e-11 Score=118.19 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=143.1
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eecc-CCC
Q 006424 296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV 371 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-~~~ 371 (645)
+|++.|++++.|+.|.+||.++|+.+..+... ..+.++.+.| ++++++ +.++.|+.||. +++.+. +... ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46678999999999999999999999988743 3688999999 999888 35788999999 666554 3332 347
Q ss_pred eEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 372 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 372 v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
+.++.+.++|+.+++.+. ++.+..+|.... . ...+........+......+.+.++| .++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~-l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGE-V-LSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSC-E-EEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCC-E-EEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence 889999999999999887 777777776433 2 22333222111111234456788887 789999999999999976
Q ss_pred ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
......... ...+.++.+.++|+.+++++.+++|..+|..+++..+..
T Consensus 155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 333333321 235567788899999999998899999999988754443
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=9.7e-10 Score=108.90 Aligned_cols=238 Identities=7% Similarity=-0.009 Sum_probs=167.7
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.....+.++++.++|++.++...++.|.+||.. +....
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~----------------------------------------- 54 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE----------------------------------------- 54 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence 345678999999999988887788999999876 32110
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
..+..+...+.++++.+++.++.+ ..++.|..+|.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus 55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK 129 (300)
T ss_dssp ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence 011123456888999988854444 447889999988 5543221 1 346789999998 8888877766889999
Q ss_pred EeCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 355 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 355 wd~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
||.. ++...+ ......+.+++++++|+..++...++.|..||. ..... .+.... ....+.++.+.++| .
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~~~~----~~~~~~~i~~d~~g-~ 200 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE--EYPLPT----NAAAPVGITSGNDG-A 200 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEECSS----TTCCEEEEEECTTS-S
T ss_pred ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE--EeeCCC----CCCCcceEEECCCC-C
Confidence 9988 655543 223467899999999996665556788999988 33322 122211 23568899999987 6
Q ss_pred EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
++++....+.|.+||.......+........+.+++++++|++.++...++.|..||..
T Consensus 201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 66666667889999975333333333345678999999999977777677899999983
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.7e-11 Score=138.37 Aligned_cols=241 Identities=17% Similarity=0.112 Sum_probs=157.7
Q ss_pred cccCcEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+|...+..++|||||++||.++.+ ..|++||+.++...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~------------------------------------- 202 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL------------------------------------- 202 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 344578999999999999887654 35999999874321
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCc--------------EEEEecCCCeE--EEEec---CCCcEEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV 333 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~--------------I~iwd~~~~~~--~~~~~---~~~~v~~l 333 (645)
. ...+...+..++|+|+..|+.++.++. |++|++.++.. ...+. +...+..+
T Consensus 203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 1 111122235688998866666666554 89999977652 22332 33358899
Q ss_pred EEeeCCCCEEEEEeCCC-----cEEEEeCCCC--c-EEEeeccCCCeEEEEEccCCCEEEEEecC----CeEEEEEecCC
Q 006424 334 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN 401 (645)
Q Consensus 334 ~~~p~~~~~l~s~s~dg-----~i~vwd~~~~--~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~ 401 (645)
.|+| ++++|+..+.++ .|++||+.++ + ...+..+...+.... +|+|+.|+..+.+ +.|.+||+.+.
T Consensus 274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 9999 999888777544 7999999876 5 555655555555553 4899988887764 45999998764
Q ss_pred ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cc-eeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424 402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV-IHKFKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
......+ ... +...+..+.++ ++ .++++...|+..+||... .. ...+.. ...+.+..+.++|+++.|+.
T Consensus 352 ~~~~~~l-~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 352 TPRFDTV-VPE----SKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp SCEEEEE-ECC----CSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred ccccEEE-ecC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence 2011111 111 12346677787 33 788888899887777533 21 222222 13567888999999886653
Q ss_pred E-e---CCccEEEEeCCCCC
Q 006424 479 I-G---DDCRVYVWNYDELC 494 (645)
Q Consensus 479 ~-s---~dg~I~iwd~~~~~ 494 (645)
. + ..++|++||+.+++
T Consensus 424 ~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 424 SFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTEEEEEEEEETTTTE
T ss_pred EEcCCCCCCEEEEEECCCCc
Confidence 2 2 35899999998765
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=7.1e-10 Score=119.70 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=146.9
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCcEEEeeccCCCeEEEEE
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICY 377 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~v~~l~~ 377 (645)
.+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+.+...........++|
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 56677888999999999999999988777788999999 99999999999999999995 6666665555556789999
Q ss_pred c----cCCCEEEEEec-CCeEEEEEecCCceeeeEEeecccc-c---cC-CCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 378 I----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-K---TS-GNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 378 s----p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~---~~-~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
+ |+|+++++++. ++.+.++|..+.+.. ..+...+.. . .| ...+..+..+++++.+++....+|.|.++|
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 9 69998888765 589999998876653 333322110 0 01 236788999998767777777789999999
Q ss_pred CCcce-eeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCc
Q 006424 448 GVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 495 (645)
Q Consensus 448 ~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~ 495 (645)
..... ..............+.|+|+|++++++. .++.|.++|+.+++.
T Consensus 327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 76431 1111112344567889999999987765 578999999998753
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.5e-09 Score=107.81 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=151.5
Q ss_pred ccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 199 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 199 H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
+..---+..|+|+ +.++++...++.|..||..++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------------------------------------------- 46 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------------------------------------------- 46 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--------------------------------------------
Confidence 4445668899995 5566777778999999987632
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCC---
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSID--- 349 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~d--- 349 (645)
...+ .+...+.++++++++.++.+. ++.|.+||.++++...... ....++.++++| +++++++...+
T Consensus 47 --~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~ 121 (297)
T 3g4e_A 47 --VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETA 121 (297)
T ss_dssp --EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSB
T ss_pred --EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccc
Confidence 1112 234678999999998666555 5689999998887644332 224588999999 88876654321
Q ss_pred --------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEec--CCceeeeEEeeccccccCC
Q 006424 350 --------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GNDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 350 --------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~ 418 (645)
+.|+.++.. ++...........+.++|+|+++.++++ +.++.|..|++. +........... .....
T Consensus 122 ~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~~ 198 (297)
T 3g4e_A 122 PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKEE 198 (297)
T ss_dssp TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGGG
T ss_pred cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCCC
Confidence 244444543 4444444445567899999999977655 557899999984 333221111111 00112
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD 481 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~ 481 (645)
.....+++.++| ++.++...++.|..||..+ ....+.. +...+++++|+ |+++.|+.++.
T Consensus 199 ~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 199 QIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 457889999998 7777778889999999763 3333333 45678999998 88887766654
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.34 E-value=1.9e-10 Score=112.32 Aligned_cols=221 Identities=8% Similarity=0.014 Sum_probs=147.7
Q ss_pred CeEEEEEcCCCeEEE-E-eCCCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 289 DVLDLAWSNSNYLLS-C-SMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s-~-s~dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
...++++++++.++. + +.++.|.+||..++..... ......+.++++++ +++++++.. ++.|.+||..+.....+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999885444 4 6788999999865543322 12335678899999 888666655 88999999887765544
Q ss_pred ec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424 366 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444 (645)
Q Consensus 366 ~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~ 444 (645)
.. ....+..++++++|+.+++...++.|.+|+..+...... .. .....+.+++++++| .++++...++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---~~----~~~~~p~~i~~~~~g-~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---PF----TGLNDPDGVAVDNSG-NVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC---CC----CSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee---cc----ccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence 32 235789999999998777777788999997554332111 11 112457789999998 6777767788999
Q ss_pred EEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424 445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 524 (645)
Q Consensus 445 iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~ 524 (645)
+||................+.+++++++|.++++...++.|.+|+..+...... .........+++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL----------PFTGLNTPLAVAVDSD 244 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC----------CCCSCSCEEEEEECTT
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee----------ccCCCCCceeEEECCC
Confidence 999765433322222336789999999998888877789999999865422110 0011134567888888
Q ss_pred Ccccc
Q 006424 525 GTEQK 529 (645)
Q Consensus 525 ~~~l~ 529 (645)
|...+
T Consensus 245 g~l~v 249 (270)
T 1rwi_B 245 RTVYV 249 (270)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 76333
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.34 E-value=2.1e-10 Score=129.42 Aligned_cols=223 Identities=11% Similarity=0.031 Sum_probs=138.8
Q ss_pred CccCeEEEEEcCCC-eEEEEeCC-----CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc--------
Q 006424 286 HKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------- 351 (645)
Q Consensus 286 h~~~V~~l~~s~~~-~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~-------- 351 (645)
|...+..++||||| +|+.++.+ ..|++||+.+++.+....+...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 44578899999998 66655443 369999999998765432222335789999 8 88888876654
Q ss_pred ------EEEEeCCCCc---EEEeec--cCCCeEEEEEccCCCEEEEEecCC-----eEEEEEecCCcee-eeEEeecccc
Q 006424 352 ------VRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDRK 414 (645)
Q Consensus 352 ------i~vwd~~~~~---~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~ 414 (645)
|++|++.++. ...... +...+..+.|+|||++|+..+.++ .|++||+.+.... ...+....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-- 316 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-- 316 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--
Confidence 8999997765 222222 233588999999999998877554 8999999876222 22222111
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424 415 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487 (645)
Q Consensus 415 ~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i 487 (645)
...... ++|+| ..|+..+. ++.|.+||+... ...+. ..+...+..++|+ ++.++++...|+..+|
T Consensus 317 ----~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 317 ----KAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp ----SSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred ----CceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 233333 34777 45555554 356999997653 12222 2244456678887 6678888888998777
Q ss_pred EeCC-CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424 488 WNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 529 (645)
Q Consensus 488 wd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~ 529 (645)
|.++ ++... ..+.+...+.+..++++|++..++
T Consensus 389 ~~~~~~g~~~---------~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 389 LAFDLDGKPA---------GAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp EEEETTSCEE---------EECBCSSSCEEEEEECCBTCSCEE
T ss_pred EEEeCCCCce---------eeccCCCCeEEEEeecCCCCCEEE
Confidence 7654 22110 111122234555666666665544
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=5.5e-10 Score=116.19 Aligned_cols=239 Identities=11% Similarity=0.060 Sum_probs=160.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
.....|+|+++|+++++...++.|++||..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--------------------------------------------- 165 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--------------------------------------------- 165 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence 46889999999998888888899999998763221
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEe----c-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~----~-~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
..... ..... ++|++++ .|+++..++ .|.+++...+.....+ . ....+.+++++| ++..|+++..++.|
T Consensus 166 ~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I 242 (409)
T 3hrp_A 166 TVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF 242 (409)
T ss_dssp EEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred Eeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence 11111 22223 8899987 778887766 7888888765543343 2 445678899999 55666667778899
Q ss_pred EEEeCCCCcEEEe----e-ccCCCe-E-EEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeec---cc-----ccc
Q 006424 353 RIWGVCEKRVVDW----A-DVRDVI-S-AICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFH---DR-----KKT 416 (645)
Q Consensus 353 ~vwd~~~~~~~~~----~-~~~~~v-~-~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~-----~~~ 416 (645)
+.||..++....+ . +....- . .++|+|+ +.++++-..++.|+.|+...... ...... +. ...
T Consensus 243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGC
T ss_pred EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCccccc
Confidence 9999987765443 1 111112 3 9999996 54555555678899998765411 111110 00 000
Q ss_pred CCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECC-cceeeEeecC-------------CCCCeEEEEEecCCCEEEEEeC
Q 006424 417 SGNKITGIQFSRDESQRIMITS-EDSKLRILDGV-DVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~-------------~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
.-.....++++++| .++++-+ .++.|+.|+.. .....+.+.. .-.....++++++|.++++-..
T Consensus 321 ~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 321 LFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp BCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred EeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 12347899999998 6777777 78999999954 3333343320 1245889999999888888888
Q ss_pred CccEEEEeC
Q 006424 482 DCRVYVWNY 490 (645)
Q Consensus 482 dg~I~iwd~ 490 (645)
+++|+.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 899988875
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=2.7e-11 Score=123.35 Aligned_cols=188 Identities=5% Similarity=0.000 Sum_probs=131.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.++.+++++...++++|+.++ +++|++++...... .... +.++..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--------------------------------~~~~~~ 83 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDST--------------------------------PLTFKW 83 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--------------------------------CCCCSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--------------------------------cccceE
Confidence 689999999999999999986 66699875321000 0000 011112
Q ss_pred eeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 282 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
.. .+.. |+.++| .+..|+++ .++.|++||+.+....... .+...+.++.+.+ . .+++++.||.|.+||+.++
T Consensus 84 ~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 84 EK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred Ee-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence 22 3566 999999 33477777 8899999999765543333 4666788887765 2 3888899999999999987
Q ss_pred cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccc---cCCCCeEEEEEcCCCCcEEEE
Q 006424 361 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~i~~i~~s~~g~~~l~~ 436 (645)
.... +...|++++|+|+| +++|..||++++|+....... ...+....... .+...|.+++|.+++ .++++
T Consensus 157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 7654 45689999999999 788999999999998877642 22232111111 245789999999986 66664
Q ss_pred E
Q 006424 437 T 437 (645)
Q Consensus 437 ~ 437 (645)
-
T Consensus 231 y 231 (388)
T 1xip_A 231 F 231 (388)
T ss_dssp E
T ss_pred E
Confidence 3
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=3.7e-09 Score=108.38 Aligned_cols=247 Identities=8% Similarity=-0.027 Sum_probs=156.2
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.++|||||++|+.+. .++.|.+||..+.........+.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-------------------------------- 117 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-------------------------------- 117 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--------------------------------
Confidence 899999999988875 36789999998643322111000
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG 350 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg 350 (645)
..+.. +...-..+.|+|+| +|+.+.. ++.|.++| .+++.+.. +..... +.+.|...+.+++.+.||
T Consensus 118 ----~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 118 ----APRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred ----ccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCC
Confidence 00000 01234578999998 6776664 57899999 99998888 765443 445563445677788899
Q ss_pred cEEEEeCCCCcEEEeec------cCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceee-eEEeeccc----cccCC
Q 006424 351 KVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG 418 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~------~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~ 418 (645)
.+.++|. +++...... ...+ .....+.+++..++..+..+.+.+.|+.+..... ..+..... .....
T Consensus 188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p 266 (373)
T 2mad_H 188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP 266 (373)
T ss_pred CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence 9999999 776653211 1111 1234566776665555678899999997553221 12211110 00011
Q ss_pred CCeEEEEEcCCCCcEEEEEEC----------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEE
Q 006424 419 NKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVY 486 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~ 486 (645)
.....+.++|++. .++++.. ++.|.++|..+....-... -.....++.|+|||+ +++++. .++.|.
T Consensus 267 ~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 267 GGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred CceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence 2244478899984 5554432 4689999987544332222 233678999999999 777777 589999
Q ss_pred EEeCCCCCcC
Q 006424 487 VWNYDELCFP 496 (645)
Q Consensus 487 iwd~~~~~~~ 496 (645)
++|..+++..
T Consensus 345 ViD~~t~~vv 354 (373)
T 2mad_H 345 IYDAGAGDQD 354 (373)
T ss_pred EEECCCCCEE
Confidence 9999987543
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=3.3e-09 Score=105.03 Aligned_cols=234 Identities=7% Similarity=0.075 Sum_probs=160.0
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
+...+.+++++++|++.++...++.|..||.. +...
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~------------------------------------------- 95 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT------------------------------------------- 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------------------------
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------------------------
Confidence 34578999999999988877778889999876 2211
Q ss_pred CceeeccCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~~~~-~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
...+......+.++++.+++.+ ++...++.|..+|.. ++.... +. ....+.++++.+ +++++++...++.|..|
T Consensus 96 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 -EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp -EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred -EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 0111122356788999988744 444457899999987 655432 22 345789999999 88877766667889999
Q ss_pred eCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 356 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 356 d~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
|. +++...+. .....+..++++++|+..++....+.|..||.. ..... .... .....+.++++.++| .+
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~----~~~~~~~~i~~d~~g-~l 243 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISE--YDIP----TPNARPHAITAGKNS-EI 243 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence 98 55554432 334568899999999766666667789999983 33221 1111 123568899999997 56
Q ss_pred EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
+++...++.|..||.......+........+.+++++++|++.++.. . .|..+|.
T Consensus 244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 66665679999999754444444333455688999999998666654 4 6776664
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.3e-09 Score=108.82 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=155.6
Q ss_pred cccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 196 IQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
+..+........|+|+|+ +++++..++.|..|+... .
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~----------------------------------------- 77 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T----------------------------------------- 77 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C-----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C-----------------------------------------
Confidence 444555678899999998 667777889999998732 1
Q ss_pred ccCCCceeeccCccCeEEEEEcCCCeEEEEeC-CCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEE---
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS--- 345 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s--- 345 (645)
...+..+...+..++++++|.++.+.. ++.|.+|+.+ ++...... ....+..++++| +++++++
T Consensus 78 -----~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~ 150 (305)
T 3dr2_A 78 -----VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPP 150 (305)
T ss_dssp -----EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCS
T ss_pred -----EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcC
Confidence 233344556788999999986666654 4789999986 55433222 123467899999 8988876
Q ss_pred -EeC-------------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC------CeEEEEEecCCceee
Q 006424 346 -GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKL 405 (645)
Q Consensus 346 -~s~-------------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~ 405 (645)
|.. .+.|+.||..+++..... .......++|+|+++.|+++... +.|..|++.......
T Consensus 151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~ 229 (305)
T 3dr2_A 151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD 229 (305)
T ss_dssp GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE
T ss_pred CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC
Confidence 331 256888888777665554 44567889999999988887765 789999987654211
Q ss_pred eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424 406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484 (645)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~ 484 (645)
....... .......+++.++| + |.+++.+ .|.+|+... ....+.. .. .+.+++|+++++.|+.++.++.
T Consensus 230 ~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 230 RRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 1111111 12345678899998 5 4444444 599999753 2333333 22 5889999999998888887653
Q ss_pred EE
Q 006424 485 VY 486 (645)
Q Consensus 485 I~ 486 (645)
.+
T Consensus 300 ~~ 301 (305)
T 3dr2_A 300 WM 301 (305)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=3.2e-09 Score=107.02 Aligned_cols=222 Identities=11% Similarity=0.006 Sum_probs=147.6
Q ss_pred cEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 202 CIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 202 ~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
-..+..|+|++ .++++...++.|..||..++. .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----------------------------------------------~ 83 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR----------------------------------------------K 83 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----------------------------------------------E
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----------------------------------------------E
Confidence 35678999974 466677778899999987631 1
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC-----CCcEEEEEEeeCCCCEEEEEeC------C
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D 349 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l~~~p~~~~~l~s~s~------d 349 (645)
..+. +...+.+++|++++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .
T Consensus 84 ~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 84 TVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA 160 (326)
T ss_dssp EEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred EEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence 1121 2457899999999865556654 499999988876443321 24688999999 8887665542 2
Q ss_pred CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEec--CC-ceee-eEE-eeccccccCCCCeEE
Q 006424 350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GN-DLKL-EKV-DFHDRKKTSGNKITG 423 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~--~~-~~~~-~~~-~~~~~~~~~~~~i~~ 423 (645)
+.|..++ +++...+.........++|+|+|+.++++. .++.|.+||+. ++ .... ..+ .+. ........
T Consensus 161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p~g 234 (326)
T 2ghs_A 161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDG 234 (326)
T ss_dssp EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEE
T ss_pred eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC----CCCCCCCe
Confidence 4566666 555554444445678999999999776654 56899999986 33 2211 111 111 11245678
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFT-TTGKHIISIGD 481 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~ 481 (645)
+++.++| .++++...++.|.+||.... ...+.. ....+.+++|+ ++++.|+.++.
T Consensus 235 i~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 235 SVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred eEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence 9999998 67777667789999997422 233332 44568999998 88887765554
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=4.1e-10 Score=125.89 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=152.5
Q ss_pred cccCcEEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 198 AHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+|...+..++|||||++||-+ +.+..|++||+.++....
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------ 169 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------------------ 169 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------------------
Confidence 466789999999999988843 333579999998743210
Q ss_pred eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCC-------------cEEEEecCCCeE--EEEec----CCCcEEE
Q 006424 273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK-------------TVRMWQVGCNQC--LNVFD----HHNYVTC 332 (645)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg-------------~I~iwd~~~~~~--~~~~~----~~~~v~~ 332 (645)
..+. ......++|+ |+ .|+.++.+. .|++|++.++.. ...+. +......
T Consensus 170 --------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 238 (693)
T 3iuj_A 170 --------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG 238 (693)
T ss_dssp --------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred --------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence 0111 1113467899 77 777777764 399999977643 23332 2345788
Q ss_pred EEEeeCCCCEEEEEeC----CCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEec-C---CeEEEEEecCCc
Q 006424 333 VQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI-T---GTCHFYKASGND 402 (645)
Q Consensus 333 l~~~p~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-d---g~i~iwd~~~~~ 402 (645)
+.|+| ++++|+.... +..|+++|+.++ ....+..+....... ++++|..|+..+. + +.|..+|+.+..
T Consensus 239 ~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 239 ATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 99999 8887755432 248999999776 556666666655555 6677776665543 2 578889987654
Q ss_pred ee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 403 LK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 403 ~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
.. ...+..+. ..+. .|++++..++++...++ .|++||..............+.+..+.++++++.|+..
T Consensus 317 ~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 317 PAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp GGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 31 11221121 2233 78888744444555554 68888876332222222244567778888888877665
Q ss_pred eCC----ccEEEEeCCCCC
Q 006424 480 GDD----CRVYVWNYDELC 494 (645)
Q Consensus 480 s~d----g~I~iwd~~~~~ 494 (645)
..+ ++|+.||+.+++
T Consensus 389 ~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EECSSSCCEEEEECTTTCC
T ss_pred ecCCCCCCEEEEEECCCCe
Confidence 544 899999998764
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.24 E-value=6.5e-09 Score=103.83 Aligned_cols=229 Identities=8% Similarity=0.010 Sum_probs=148.4
Q ss_pred eccCccCeEEEEEcCCCeEE-E-------EeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCC-CCEEEEEeC
Q 006424 283 LHGHKGDVLDLAWSNSNYLL-S-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGSI 348 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~~l~-s-------~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~-~~~l~s~s~ 348 (645)
+...-....+++|++++.++ + +..++.|.+||..+++...... +...+.++++++ + ++++++ +.
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-EC
Confidence 34444567889999888444 4 3678999999988877654332 446789999998 7 554444 44
Q ss_pred CCcEEEEeCCCCcEEEe-ecc-----CCCeEEEEEccCCCEEEEEecC---------------CeEEEEEecCCceeeeE
Q 006424 349 DGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLEK 407 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~~-~~~-----~~~v~~l~~sp~g~~l~~g~~d---------------g~i~iwd~~~~~~~~~~ 407 (645)
.+.|.+||.. ++...+ ... ...+.+++++++|+++++...+ +.|..|+.. .... .
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--~ 166 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI--Q 166 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--E
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--E
Confidence 5579999998 776554 321 2358899999999877766554 456666654 2221 1
Q ss_pred EeeccccccCCCCeEEEEEc----CCCCcEEEEEECCCeEEEEECC-cce----eeEee-cCCC-CCeEEEEEecCCCEE
Q 006424 408 VDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKG-LPKS-GSQMSASFTTTGKHI 476 (645)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~s----~~g~~~l~~~s~dg~I~iwd~~-~~~----~~~~~-~~~~-~~i~~v~~sp~~~~l 476 (645)
.. .. ......++++ |++..++++...++.|.+||.. ... ..+.. ..+. ..+..++++++|+++
T Consensus 167 ~~-~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 167 VD-TA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EE-EE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred ec-cC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 11 11 1346788999 9973334444568999999964 211 12221 1122 567889999999998
Q ss_pred EEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424 477 ISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533 (645)
Q Consensus 477 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~ 533 (645)
++...++.|.+||.+++...... . .+...+.++++++++..|+....
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~---------~-~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRI---------R-CPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEE---------E-CSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEcCCCEEEEEcCCCCcEeEEE---------e-CCCCCceeEEECCCCCEEEEEeC
Confidence 88888899999998755321110 1 12245677888888886665443
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.23 E-value=2.5e-09 Score=108.35 Aligned_cols=259 Identities=10% Similarity=-0.007 Sum_probs=161.9
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 206 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 206 l~fspdg~~L~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
....|+++.+..... ++.|.+.|..+. +.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---------------------------------------------~v~ 72 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---------------------------------------------RVI 72 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---------------------------------------------EEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC---------------------------------------------eEE
Confidence 345789987777755 678999999873 333
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCC
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN 341 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~ 341 (645)
..+.....+ . ++++|++ +++.++ .++.|.+||..+++.+..+... .....+.|+| +++
T Consensus 73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk 149 (386)
T 3sjl_D 73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK 149 (386)
T ss_dssp EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence 444433334 3 8999998 565554 3678999999999988877421 2466789999 999
Q ss_pred EEEEEeC--CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC-CceeeeEEeeccccccCC
Q 006424 342 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG 418 (645)
Q Consensus 342 ~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 418 (645)
+++++.. ++.|.++|+.+++.+......+. ...+....+.+++.+.||.+.+.++.. +... .... .......
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceecccc
Confidence 9888864 68999999999998775544332 223333456777888899998888876 3331 1111 1110111
Q ss_pred CCeE-EEEEc-CCCCcEEEEEECCCeEEEEECCcce----eeEeec--------CCCCCeEEEEEecCCCEEEEEeC---
Q 006424 419 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDVI----HKFKGL--------PKSGSQMSASFTTTGKHIISIGD--- 481 (645)
Q Consensus 419 ~~i~-~i~~s-~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~--------~~~~~i~~v~~sp~~~~l~t~s~--- 481 (645)
.++. ...|. ++| +++ ..+.+|.|++.|..... ..+... -..+....++++++++.++....
T Consensus 225 ~~~~~~~~~~~~dG-~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 225 EFLINHPAYSQKAG-RLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp SCBCSCCEEETTTT-EEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred ccccccceeEcCCC-cEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 2221 23564 565 444 46668999999975322 112100 01123335777999998888643
Q ss_pred -------CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccc
Q 006424 482 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKS 530 (645)
Q Consensus 482 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~ 530 (645)
.+.|.+.|+.+.+........ .....+++++|+. .|+.
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg-----------~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMG-----------HEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-----------EEECEEEECSSSSCEEEE
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECC-----------CCcceEEECCCCCeEEEE
Confidence 257999999887533222111 1244666677765 4444
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=2.1e-09 Score=109.21 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=157.2
Q ss_pred CcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424 201 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 278 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (645)
.....++++|+|+++++.. .++.++||.+.++.. ..+.. ..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p~-----------------------------------~~ 59 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFPP-----------------------------------QS 59 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESCC-----------------------------------CC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCCC-----------------------------------cc
Confidence 6799999999999988864 234366666543211 01100 00
Q ss_pred CceeeccCccCeEEEEEcCCCeEEEEeC------CCcEEEEecCCCeEEEEecC-------CCcEEEEEEeeCCCCEEEE
Q 006424 279 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~-------~~~v~~l~~~p~~~~~l~s 345 (645)
....+|-..+..+++++++.|+.+.. ++.|.+||+.+++.+..+.. ...+..++++|.++..+++
T Consensus 60 --~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 60 --GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp --SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred --cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 01124567899999999886665543 47899999999987776642 2356899999823444455
Q ss_pred Ee---CCCcEEEEeCCCCcEEEeecc------------------------------CCCeEEEEEccCCCEEEEEecCC-
Q 006424 346 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITG- 391 (645)
Q Consensus 346 ~s---~dg~i~vwd~~~~~~~~~~~~------------------------------~~~v~~l~~sp~g~~l~~g~~dg- 391 (645)
.. .++.|.+||+.+++....... ...+..++|+|+|+.|+++..++
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 44 578999999988776553321 12368899999999999887766
Q ss_pred eEEEEEec---CCcee----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC-CcceeeEeecCCCCC
Q 006424 392 TCHFYKAS---GNDLK----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGS 463 (645)
Q Consensus 392 ~i~iwd~~---~~~~~----~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~ 463 (645)
.+..++.. ..... ...+...+ +......++++++| .++++...++.|.+||. ......+........
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 44444432 11100 00000001 11345678999997 78888888999999998 332333332223456
Q ss_pred eEEEEEecCCCEEEEEeCCccEEEEe
Q 006424 464 QMSASFTTTGKHIISIGDDCRVYVWN 489 (645)
Q Consensus 464 i~~v~~sp~~~~l~t~s~dg~I~iwd 489 (645)
+.+++|+++++++++.+..+.+.+|.
T Consensus 293 p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCeeEECCCCcEEEEeCccccccccc
Confidence 89999999999888887665555444
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.21 E-value=7.8e-09 Score=102.65 Aligned_cols=224 Identities=14% Similarity=0.041 Sum_probs=146.8
Q ss_pred cCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 288 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 288 ~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
.-.-+..|+++ + .+++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++...+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 34457788885 4 566667789999999987765 4455667899999999 8885554 4 56899999988876554
Q ss_pred ecc-----CCCeEEEEEccCCCEEEEEecC---------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 366 ADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 366 ~~~-----~~~v~~l~~sp~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
... ...++.++++|+|+++++.... ..-.+|.+.......... .. ......++|+|++.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~-----~~~pngi~~spdg~ 161 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQ-----VDISNGLDWSLDHK 161 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EE-----ESBEEEEEECTTSC
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--ec-----cccccceEEcCCCC
Confidence 332 2357889999999966554321 234555554322111111 11 13467899999984
Q ss_pred cEEEEEECCCeEEEEECC--cce----eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCc
Q 006424 432 QRIMITSEDSKLRILDGV--DVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 504 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~--~~~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 504 (645)
.++++.+.++.|.+|+.. ... ..+.. .........++++++|++.++...++.|.+||.++++.....
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i----- 236 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV----- 236 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE-----
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE-----
Confidence 455666778999999863 211 11221 122356789999999998888888889999998866422111
Q ss_pred ceeeeeecCCcEEEEecC-CCCccccccC
Q 006424 505 RSCEHFFSEGVSVAVQWP-GIGTEQKSLC 532 (645)
Q Consensus 505 ~~~~~~~~~g~~~~v~~s-~~~~~l~~~~ 532 (645)
-.+...+..++|. |++..|+..+
T Consensus 237 -----~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 237 -----KLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -----ECCCCCceEEEEeCCCCCEEEEEc
Confidence 1123446677786 6777766443
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.19 E-value=2.6e-09 Score=108.19 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=151.6
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.++++|||++|+.++ .++.|.+||..+.........+.+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g------------------------------- 130 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA------------------------------- 130 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------------------------
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc-------------------------------
Confidence 499999999887765 367899999988543221110000
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
+.. .....-..+.++|+| +++.+.. ++.|.++|+.+++.+..+...+. ....|...+.+++.+.||.
T Consensus 131 ---~r~----~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~ 200 (386)
T 3sjl_D 131 ---PRF----LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGS 200 (386)
T ss_dssp ---CCC----CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSC
T ss_pred ---ccc----ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCC
Confidence 000 001234568999998 6666653 68999999999999998865442 2233535667888888999
Q ss_pred EEEEeCCC-CcEEEee-cc----CCCe-EEEEEc-cCCCEEEEEecCCeEEEEEecCCceee-eEEeeccc----cccCC
Q 006424 352 VRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG 418 (645)
Q Consensus 352 i~vwd~~~-~~~~~~~-~~----~~~v-~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~ 418 (645)
+.+.++.. ++..... .. ...+ ....|. ++|++++ .+.+|.+++.|+.+..... ..+..... .....
T Consensus 201 ~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p 279 (386)
T 3sjl_D 201 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 279 (386)
T ss_dssp EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC
Confidence 99999876 5542211 11 1122 124554 5775555 5668999999997665322 22221000 00001
Q ss_pred CCeEEEEEcCCCCcEEEEEEC---------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEE-eCCccEEE
Q 006424 419 NKITGIQFSRDESQRIMITSE---------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISI-GDDCRVYV 487 (645)
Q Consensus 419 ~~i~~i~~s~~g~~~l~~~s~---------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~-s~dg~I~i 487 (645)
.....+.+++++..++++... .+.|.++|..+....-... -...+.++.+++|++ +|+++ ..++.|.+
T Consensus 280 ~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 280 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 233356778887444444331 3579999987543322221 123677999999997 66665 45899999
Q ss_pred EeCCCCC
Q 006424 488 WNYDELC 494 (645)
Q Consensus 488 wd~~~~~ 494 (645)
+|..+++
T Consensus 359 iD~~t~k 365 (386)
T 3sjl_D 359 HDAESGE 365 (386)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9999875
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.18 E-value=5.1e-09 Score=108.86 Aligned_cols=203 Identities=13% Similarity=0.028 Sum_probs=141.6
Q ss_pred cCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEE
Q 006424 288 GDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD 364 (645)
Q Consensus 288 ~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~ 364 (645)
.....++|++++. +++...++.|++||..++............. ++|+| +++.|+++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999885 4455566899999999888766655444444 89999 888888888766 79999887654432
Q ss_pred ee----c-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE-eeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 365 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 365 ~~----~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
.. . ....+.+++++|++..|+++..++.|+.||..+........ ...+. ....+...++|+|++..++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence 22 2 45668899999965566667778899999998665322100 01110 00011238999996446777777
Q ss_pred CCCeEEEEECCcceeeEeecC-------------CCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424 439 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 494 (645)
Q Consensus 439 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~ 494 (645)
.++.|+.|+.......+.+.. .-.....++++|+|+++++-+ .+++|+.|++.++.
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 789999999765444444421 023578999999999888877 88999999976664
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=4e-09 Score=107.35 Aligned_cols=133 Identities=8% Similarity=0.041 Sum_probs=106.3
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 277 (645)
Q Consensus 198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (645)
.+.+ |+.++| |+++|+++ .++.|++||+.+..
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------------------------------------------- 117 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------------------------------------------- 117 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence 3566 999999 99999999 88999999998731
Q ss_pred CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
.......|...+.++.+.+.+ +++++.||.|.+||+.++.... +...|+|++|+| +| ++.|..||++++|+.
T Consensus 118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 123344566778888877544 8889999999999999877654 456899999999 77 778999999999998
Q ss_pred CCCcE--EE-e------e---ccCCCeEEEEEccCCCEEEE
Q 006424 358 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIV 386 (645)
Q Consensus 358 ~~~~~--~~-~------~---~~~~~v~~l~~sp~g~~l~~ 386 (645)
..+++ .. + . ++...|.+++|.+++.++++
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 88774 32 3 2 36788999999999988876
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.15 E-value=6.9e-08 Score=98.86 Aligned_cols=221 Identities=10% Similarity=-0.055 Sum_probs=137.5
Q ss_pred EEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEEEeC--CC
Q 006424 292 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 350 (645)
Q Consensus 292 ~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~~l~s~s~--dg 350 (645)
.++++|++ +++.+. .++.|.+||..+.+.+..+... .....+.|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 88999998 666554 3678999999988887766422 3456899999 9999998874 47
Q ss_pred cEEEEeCCCCcEEEe-eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC-eEEEEEc
Q 006424 351 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS 427 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~s 427 (645)
.|.++| .+++.... ...... +.+.|++ +.+++.+.||.+.++|. +...... ....... ....+ .....+.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence 899999 99888766 554433 4455655 45566778999999999 5554311 1100000 00112 2334566
Q ss_pred CCCCcEEEEEECCCeEEEEECCcce----eeEeecC--------CCCCeEEEEEecCCCEEEEEeC----------CccE
Q 006424 428 RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV 485 (645)
Q Consensus 428 ~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~i~~v~~sp~~~~l~t~s~----------dg~I 485 (645)
+++..++++ +.++.+.+.|..... ..+.... .......+.++|+++.++.+.. ++.|
T Consensus 222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 665344444 477899999975321 1111100 1122344788999998887653 3579
Q ss_pred EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccC
Q 006424 486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLC 532 (645)
Q Consensus 486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~ 532 (645)
.+.|..+.+..... .-.+....++|+|||. .++...
T Consensus 301 ~VID~~t~~vv~~i-----------~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 301 TSVTGLVGQTSSQI-----------SLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred EEEECCCCEEEEEE-----------ECCCCcCeEEECCCCCeEEEEEc
Confidence 99999877432211 1122345777788777 555443
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.12 E-value=8.2e-08 Score=96.59 Aligned_cols=218 Identities=9% Similarity=-0.026 Sum_probs=141.8
Q ss_pred eEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424 290 VLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 290 V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 367 (645)
..+..|+++ + .+++...++.|..||..+++.. .+.....+.+++|+| +++++++. . ..|.+||..+++...+..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 456789986 4 5666667899999999887653 344566899999999 88776654 4 459999998887665433
Q ss_pred c-----CCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 368 V-----RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 368 ~-----~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
. ...++.+.++|+|+++++... .+.|..++ +... ..+. .. ......++|+|+|..++++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~-~~-----~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLF-AD-----ISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEE-EE-----ESSEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEee-CC-----CcccCCeEEcCCCCEEEEE
Confidence 2 235889999999986655432 24455555 3322 1111 11 1346789999998444455
Q ss_pred EECCCeEEEEECC--cc-e----eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424 437 TSEDSKLRILDGV--DV-I----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 508 (645)
Q Consensus 437 ~s~dg~I~iwd~~--~~-~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 508 (645)
.+.++.|.+||.. .. . ..+.. ........+++++++|.+.++...++.|.+||.. ++... ..
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~---------~i 266 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA---------RY 266 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE---------EE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE---------EE
Confidence 5667899999964 22 1 12221 1123456889999999988877777899999974 32110 00
Q ss_pred eeecCCcEEEEecC-CCCccccccC
Q 006424 509 HFFSEGVSVAVQWP-GIGTEQKSLC 532 (645)
Q Consensus 509 ~~~~~g~~~~v~~s-~~~~~l~~~~ 532 (645)
-.+...+.+++|+ +++..|+...
T Consensus 267 -~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 267 -EVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp -ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred -ECCCCCcEEEEEecCCCCEEEEEe
Confidence 1123456788887 7777776443
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=1.1e-08 Score=105.52 Aligned_cols=249 Identities=9% Similarity=0.050 Sum_probs=156.8
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424 205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 274 (645)
Q Consensus 205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (645)
.+.++|||++|+.+. .++.|.++|..+.........+.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g-------------------------------- 169 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD-------------------------------- 169 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT--------------------------------
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC--------------------------------
Confidence 799999999887775 46789999998854322111000
Q ss_pred ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424 275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351 (645)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~ 351 (645)
.. .+ ........+.++|++ +++.+.. ++.|.+.|+.+++.+..+..... ....|.....+++.+.||.
T Consensus 170 --~~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 170 --AP---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp --CC---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSS
T ss_pred --cc---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCC
Confidence 00 00 001223467899998 7777664 57899999999999988865442 2344423466777788899
Q ss_pred EEEEeCCCCcEEEe----ec-cCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccc-cc---cCCCC
Q 006424 352 VRIWGVCEKRVVDW----AD-VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR-KK---TSGNK 420 (645)
Q Consensus 352 i~vwd~~~~~~~~~----~~-~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~-~~---~~~~~ 420 (645)
+.+.+..+++.... .. ...+ ...+.|.+++..++..+..+.+.+.|..+...... .+..... .. .....
T Consensus 241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g 320 (426)
T 3c75_H 241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG 320 (426)
T ss_dssp EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence 88888866655421 11 1111 12356789999888888899999999976543221 1111100 00 00111
Q ss_pred eEEEEEcCCCCcEEEEEE---------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEe
Q 006424 421 ITGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWN 489 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s---------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd 489 (645)
...+.++|++...+++.. .++.|.++|..+....-... -.....++.|+|||+ +++++. .++.|.++|
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 223689999744444433 24589999987543322221 112478999999999 888887 589999999
Q ss_pred CCCCCc
Q 006424 490 YDELCF 495 (645)
Q Consensus 490 ~~~~~~ 495 (645)
+.+.+.
T Consensus 400 ~~t~kv 405 (426)
T 3c75_H 400 AATGEE 405 (426)
T ss_dssp TTTCCE
T ss_pred CCCCCE
Confidence 998853
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=2.2e-08 Score=99.76 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=147.4
Q ss_pred CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
..+..+..+........|++++ .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 3455566566677889999886 4667778899999998 455433334566789999999 88877666566789999
Q ss_pred eCCCCcEEEeecc-----CCCeEEEEEccCCCEEEE----Eec-------------CCeEEEEEecCCceeeeEEeeccc
Q 006424 356 GVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 356 d~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l~~----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
+.. ++...+... ...++.+.++|+|++.++ |.. .+.|..||..+....... .
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~- 186 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----D- 186 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----E-
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----c-
Confidence 986 554443221 234678999999997775 332 245667776555433221 1
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECC------CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
......++|+|++ ..|+.+... +.|++|+..... ..+.. ...+....++++++|++.++ +.+|
T Consensus 187 ----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~-~~~g 259 (305)
T 3dr2_A 187 ----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSS-SGTG 259 (305)
T ss_dssp ----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEEC-CSSE
T ss_pred ----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEe-cCCc
Confidence 1356789999998 566666554 789999965321 11111 12344567899999995554 4454
Q ss_pred cEEEEeCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCc
Q 006424 484 RVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSL 536 (645)
Q Consensus 484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~ 536 (645)
|.+|+.+... . ..+. +. .+..++|++++..|+....+.+
T Consensus 260 -v~~~~~~g~~-~-----------~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 260 -VCVFDSDGQL-L-----------GHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -EEEECTTSCE-E-----------EEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred -EEEECCCCCE-E-----------EEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 9999875331 1 0111 22 2456777788888886665433
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=1.5e-08 Score=113.19 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=126.4
Q ss_pred cCccCeEEEEEcCCC-eEE-EEeC----CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------
Q 006424 285 GHKGDVLDLAWSNSN-YLL-SCSM----DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-------- 350 (645)
Q Consensus 285 ~h~~~V~~l~~s~~~-~l~-s~s~----dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg-------- 350 (645)
+|...+..++||||| +|+ +.+. +..|++||+.+++.+...-.......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 355678899999998 555 3322 357999999999876542111113567898 677788777764
Q ss_pred -----cEEEEeCCCCc----EEE-eec-cCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccc
Q 006424 351 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 351 -----~i~vwd~~~~~----~~~-~~~-~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
.|++|++.++. ++. ... +.....++.|+|||++|+.... .+.++++|+.+.......+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~--- 280 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL--- 280 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS---
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC---
Confidence 39999987754 222 122 3445788999999998876543 24899999876643333322221
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCC-c--cE
Q 006424 416 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RV 485 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g--~I 485 (645)
...... ++++|..+++.+..+ +.|..+|+.... ..+.. +...+. .|++++++|+....+ + .|
T Consensus 281 ---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 281 ---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 233333 666665666666554 689999976432 23333 334444 889999988777654 3 78
Q ss_pred EEEeCCCC
Q 006424 486 YVWNYDEL 493 (645)
Q Consensus 486 ~iwd~~~~ 493 (645)
++|+++++
T Consensus 353 ~~~d~~g~ 360 (693)
T 3iuj_A 353 EQFDYEGK 360 (693)
T ss_dssp EEECTTSC
T ss_pred EEEECCCC
Confidence 99998754
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=8.3e-08 Score=97.82 Aligned_cols=189 Identities=10% Similarity=0.121 Sum_probs=125.2
Q ss_pred eEEEEEcCCCeEEEEeCC------CcEEEEecCCCeEEEEecCC----CcEEEEEEeeCCCCEEEEEe------------
Q 006424 290 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------ 347 (645)
Q Consensus 290 V~~l~~s~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~----~~v~~l~~~p~~~~~l~s~s------------ 347 (645)
-..+...|++.++++..+ +.|.+.|.++++.+...... ..-..+.|+| +++.+++..
T Consensus 140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence 345666788866665555 78999999999999888522 2234578899 888888874
Q ss_pred -------CCCcEEEEeCCCCcEEEeeccC---CCeEEEEE--ccCCCEEEEEec------CCeEEEEEecCCceeeeE-E
Q 006424 348 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLEK-V 408 (645)
Q Consensus 348 -------~dg~i~vwd~~~~~~~~~~~~~---~~v~~l~~--sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~-~ 408 (645)
.+.+|.+||+.+++........ .....+.| +|+++++++++. +++|.+|....+...... +
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 3689999999988776644443 34555656 999999888875 568888777654332221 1
Q ss_pred eeccccc------------cCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcc-----eeeEeecCC----------
Q 006424 409 DFHDRKK------------TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDV-----IHKFKGLPK---------- 460 (645)
Q Consensus 409 ~~~~~~~------------~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~-----~~~~~~~~~---------- 460 (645)
....... ........|.+++|| ++|+++. ..+.|.+||+... .........
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 1111000 002457889999998 5555554 4689999997521 111111100
Q ss_pred --CCCeEEEEEecCCCEEEEEe
Q 006424 461 --SGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 461 --~~~i~~v~~sp~~~~l~t~s 480 (645)
.+....+.++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 11357899999999999987
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.99 E-value=4.3e-08 Score=101.17 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=136.6
Q ss_pred EEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEEEeC--CC
Q 006424 292 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 350 (645)
Q Consensus 292 ~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~~l~s~s~--dg 350 (645)
.+.++|++ +++.+. .++.|.++|..+++.+..+... .....+.|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 79999997 555554 4679999999999988876432 3456789999 9999998874 57
Q ss_pred cEEEEeCCCCcEEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC-eEEEEEcC
Q 006424 351 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR 428 (645)
Q Consensus 351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~s~ 428 (645)
.|.+.|+.+.+.+........ ....|++ +.+++.+.||.+.+.+........ ... ........+ ...+.+.+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~-~~~--~~~~v~~~p~~~~~~~~~ 274 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKV-TNT--EVFHTEDELLINHPAFSL 274 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEE-EEC--CCCSCTTSCBCSCCEECT
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEE-Eee--eeeccCCCceeeEeeecC
Confidence 899999999988765444332 2334443 455666778888888874443321 110 000000111 12356788
Q ss_pred CCCcEEEEEECCCeEEEEECCcce----eeEeecC--------CCCCeEEEEEecCCCEEEEEeC----------CccEE
Q 006424 429 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY 486 (645)
Q Consensus 429 ~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~i~~v~~sp~~~~l~t~s~----------dg~I~ 486 (645)
++ ..++..+..+.|.+.|..... ..+.... .......++++|+++++++... ++.|.
T Consensus 275 dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 275 RS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 87 455555678999999975321 1111100 0111223689999988777642 35799
Q ss_pred EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccC
Q 006424 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLC 532 (645)
Q Consensus 487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~ 532 (645)
+.|..+.+........ +....++++||+. .++...
T Consensus 354 VID~~T~kvv~~I~vg-----------~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 354 VLNAETGERINKIELG-----------HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp EEETTTCCEEEEEEEE-----------EEECEEEECCSSSCEEEEEE
T ss_pred EEECCCCeEEEEEECC-----------CCcCeEEEccCCCEEEEEEc
Confidence 9999887533222111 1244666777776 555444
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.96 E-value=2.5e-07 Score=95.00 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=117.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCe----
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI---- 372 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v---- 372 (645)
++.++.++.++.|..+|..+|+.+..+.....+.+ ... .+..+++++.++.|..+|..+++..........+
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 56888899999999999999998877654333222 222 2457888888999999999998876544333222
Q ss_pred --EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCC---e-EEEEEcCCCCcEEEEEECCCeEEE
Q 006424 373 --SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNK---I-TGIQFSRDESQRIMITSEDSKLRI 445 (645)
Q Consensus 373 --~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~---i-~~i~~s~~g~~~l~~~s~dg~I~i 445 (645)
..... .+..+++++.+|.+..+|..+++..... ......... ... + ...... + ..+++++.++.+..
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence 11222 2457888888999999999877654331 111100000 000 0 001111 2 46788888999999
Q ss_pred EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424 446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 495 (645)
Q Consensus 446 wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~ 495 (645)
+|..+........ ......+.. ++..++.++.++.|+.+|..+++.
T Consensus 254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 9987655444432 223444443 467888888899999999988743
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.89 E-value=1.7e-08 Score=102.47 Aligned_cols=244 Identities=6% Similarity=-0.081 Sum_probs=145.0
Q ss_pred ccccccccCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424 193 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262 (645)
Q Consensus 193 ~~~l~~H~~~V~~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (645)
..++..-..+ .+.|+|||++++.+. .++.|.+||..++...
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--------------------------- 109 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--------------------------- 109 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------
Confidence 3344333345 799999999888876 3688999999985432
Q ss_pred cceeecCCCceeccCCCceeeccC-------ccCeEEEEEcCCC-eEEEEeC--CCcEEE--EecCCCeEEEEecCCCcE
Q 006424 263 HVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNYV 330 (645)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~s~~~-~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~~~v 330 (645)
..+..+ ......++++|+| +++.+.. +..|.+ +|..+ +..+.....
T Consensus 110 ------------------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~- 167 (368)
T 1mda_H 110 ------------------ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC- 167 (368)
T ss_dssp ------------------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-
T ss_pred ------------------EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-
Confidence 232211 1234568999998 7777664 467888 99876 444432221
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CcEEE-----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC
Q 006424 331 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 400 (645)
Q Consensus 331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~~~~-----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~ 400 (645)
..+.|.....+++.+.|+.+.+.|+.+ ++... +.-...+. . .+++..++..+. +.+.+.|..+
T Consensus 168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence 223452345666777889988889876 43321 11112222 3 566666666666 9999999865
Q ss_pred Cceee-eEEeeccc----cccCCCCeEEEEEcCCCCcEEEEEE---C-----CCeEEEEECCcceeeEeecCCCCCeEEE
Q 006424 401 NDLKL-EKVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDVIHKFKGLPKSGSQMSA 467 (645)
Q Consensus 401 ~~~~~-~~~~~~~~----~~~~~~~i~~i~~s~~g~~~l~~~s---~-----dg~I~iwd~~~~~~~~~~~~~~~~i~~v 467 (645)
..... ..+.+... ..........+.++|++..++++.. . ++.+.++|..+....-... -.....++
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi 319 (368)
T 1mda_H 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAI 319 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEE
T ss_pred CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceE
Confidence 43211 11111100 0000011222689999844444444 2 3456699987543222221 11257899
Q ss_pred EEecCCC-EEEEEe-CCccEEEEeCCCCCc
Q 006424 468 SFTTTGK-HIISIG-DDCRVYVWNYDELCF 495 (645)
Q Consensus 468 ~~sp~~~-~l~t~s-~dg~I~iwd~~~~~~ 495 (645)
+|+|||+ .+++.. .++.|.++|+.+.+.
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 9999998 456666 599999999998853
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=4.7e-07 Score=95.64 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=128.1
Q ss_pred CC-eEE-EEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 006424 298 SN-YLL-SCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQF-N-PIDDNYFISGS------------------IDGKVR 353 (645)
Q Consensus 298 ~~-~l~-s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~-~-p~~~~~l~s~s------------------~dg~i~ 353 (645)
|| +++ +...++.|.+.|+.+.++...+ ........+++ . | +++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 55 444 4445667999999999988844 34456888888 4 7 888888885 245799
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC--------------------------------------eEEE
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCHF 395 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg--------------------------------------~i~i 395 (645)
+.|..+.++.......+....++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999988776555444567788999999999988553 2444
Q ss_pred EEecC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-----------eeEeecCCCC
Q 006424 396 YKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-----------HKFKGLPKSG 462 (645)
Q Consensus 396 wd~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-----------~~~~~~~~~~ 462 (645)
.|..+ .......+... ....++.++|||...++++..+.+|.++|..+.. .......-..
T Consensus 259 ID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 55444 11111122211 3456789999995556666678999999987432 1111222345
Q ss_pred CeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 463 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 463 ~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
....++|+|+|...++.-.|+.|.+||++.
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 678999999994444555799999999976
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.79 E-value=1.5e-06 Score=87.96 Aligned_cols=202 Identities=6% Similarity=0.005 Sum_probs=126.8
Q ss_pred cCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEe--------cCCCcEEEEEEeeCCCCEEEEEeC-----CCc
Q 006424 288 GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDDNYFISGSI-----DGK 351 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~--------~~~~~v~~l~~~p~~~~~l~s~s~-----dg~ 351 (645)
..+..+++++++ .+++.. .++.++||.+.+++.. .+ .+-..+.++++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 678999999998 445543 2343566665556533 22 1345789999999 7776665433 578
Q ss_pred EEEEeCCCCcEEEeecc-------CCCeEEEEEccCCCEEEEEe----cCCeEEEEEecCCceeeeEEee----------
Q 006424 352 VRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDF---------- 410 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~---------- 410 (645)
|.+||+.++++...... ...+..+++++++..++++. .++.|.+||+.+..... ....
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r-~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR-VLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE-ECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE-EecCCCcccccccc
Confidence 99999998885543221 23568999998765555543 57899999987654321 1100
Q ss_pred ---ccccc----c------CCCCeEEEEEcCCCCcEEEEEECCC-eEEEEECCcc----------eeeEeecCCCCCeEE
Q 006424 411 ---HDRKK----T------SGNKITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMS 466 (645)
Q Consensus 411 ---~~~~~----~------~~~~i~~i~~s~~g~~~l~~~s~dg-~I~iwd~~~~----------~~~~~~~~~~~~i~~ 466 (645)
.+... . ....+..++|+|+| ..|+.+..++ .+..++.... ...+....+......
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 00000 0 01246889999998 6666666554 6666653210 001111112335567
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++++++|.++++...++.|.+||..++
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCC
Confidence 999999999999989999999998444
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=1.1e-05 Score=78.27 Aligned_cols=197 Identities=7% Similarity=-0.041 Sum_probs=125.2
Q ss_pred cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCcEE
Q 006424 288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVV 363 (645)
Q Consensus 288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l-~s~s~dg~i~vwd~~~~~~~ 363 (645)
..+..++|+++ +.|+ +-..++.|..++...+....... .......++++| ++..+ ++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 45778999985 5555 55557899999997665433333 224678999998 55544 44455678999998765433
Q ss_pred Eeecc-CCCeEEEEEccCCCEEEEEec---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 364 DWADV-RDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 364 ~~~~~-~~~v~~l~~sp~g~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
.+... ......++++|++..|+.+.. .+.|..+++....... + ... .......+++++++..++++-..
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~-~~~----~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--L-AQD----NLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--E-ECT----TCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--E-EEC----CCCCCcEEEEcCCCCEEEEEECC
Confidence 33222 256789999997776666654 3688888876543211 1 111 12457889999986455566666
Q ss_pred CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+.|.++|........... ......+++.. .+..+++....+.|.++|..+++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 7899999976322211111 22345677664 34444444456899999988764
No 228
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.74 E-value=3.2e-06 Score=84.71 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=149.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
.-.+++++++|+++.++..++.|..|+..+........... .... ....+....
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~------------------------~~~~g~~~~ 73 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--YWNK------------------------AFCENSTDA 73 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--TCCH------------------------HHHTTCCCG
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--cccc------------------------cccccccch
Confidence 35678899999978888889999999876532211100000 0000 000000000
Q ss_pred eeccCccCeEEEEEcC-CCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeC-------
Q 006424 282 ELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI------- 348 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~------- 348 (645)
........+..+++.+ ++.|+.+...+.|..+|..++....... .......+++.+.++++.++-..
T Consensus 74 ~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 74 EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp GGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred hccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 0001123578899997 7777777766678889887654322211 11346788888634555554322
Q ss_pred ----------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCcee-eeEEeecccccc
Q 006424 349 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK-LEKVDFHDRKKT 416 (645)
Q Consensus 349 ----------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~ 416 (645)
++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+.... ...+. ..
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~---- 228 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KI---- 228 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-EC----
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eC----
Confidence 367888998777665443333456789999999977766 45689999998753211 11111 11
Q ss_pred CCCCeEEEEEcCCCCcEEEEEEC----------CCeEEEEECCc-ceeeEeecCC--CCCeEEEEEecCCCEEEEEeCCc
Q 006424 417 SGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVD-VIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDC 483 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~s~----------dg~I~iwd~~~-~~~~~~~~~~--~~~i~~v~~sp~~~~l~t~s~dg 483 (645)
.. ...+++.++| .++++... .+.|..+|... ....+..... ...+..+++ .++++.++....+
T Consensus 229 -~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 229 -PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp -SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred -CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 13 6789999998 55555443 46788888642 2333333211 234666666 4666666666788
Q ss_pred cEEEEeCCCC
Q 006424 484 RVYVWNYDEL 493 (645)
Q Consensus 484 ~I~iwd~~~~ 493 (645)
.|.++++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 9999997643
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=2.8e-06 Score=81.40 Aligned_cols=209 Identities=11% Similarity=0.039 Sum_probs=136.5
Q ss_pred cccccccccC--cEEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 192 TSQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 192 ~~~~l~~H~~--~V~~l~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
..+++ .|.. ....+.|+|++.+.++.+. ++.|.+.|+.+++......
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~---------------------------- 61 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK---------------------------- 61 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence 34444 3443 3689999998765555543 6799999999854332111
Q ss_pred cCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCCEEEEE
Q 006424 268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~ 346 (645)
+..+ .....+++..+...++.-.++.+.++|..+.+.+..+... ..- ..+++ +++.++++
T Consensus 62 ---------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~-Dg~~l~vs 122 (266)
T 2iwa_A 62 ---------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLAT-DGKILYGS 122 (266)
T ss_dssp ---------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEE-CSSSEEEE
T ss_pred ---------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEE-CCCEEEEE
Confidence 1111 1122455554334455567899999999999999988644 322 33555 66666666
Q ss_pred eCCCcEEEEeCCCCcEEEeeccC------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-------
Q 006424 347 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------- 413 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~~------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------- 413 (645)
..++.|.++|..+.+........ ..++.+.|. +|...+....++.|.+.|..+.+. ...+.+.+.
T Consensus 123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~ 200 (266)
T 2iwa_A 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDE 200 (266)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccc
Confidence 67889999999997766533221 236788887 675444444678999999998876 344444321
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
..........++|+|++..+++++...+.+.+.++..
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0111246689999999877777887889999888653
No 230
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.73 E-value=1.3e-05 Score=90.93 Aligned_cols=239 Identities=10% Similarity=0.146 Sum_probs=157.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 282 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (645)
|.++...++|.+.+ |+.++-+..|+..+..... ..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-------------------------------------------~~- 209 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-------------------------------------------VI- 209 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-------------------------------------------CC-
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-------------------------------------------ec-
Confidence 88898888886555 5554448888876532110 00
Q ss_pred eccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 283 l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
...+...|.++...+++.+..|+.++-+..||..+++...... ....|.++...+ ++.+. .|+.+ -|.+
T Consensus 210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~ 286 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNI 286 (795)
T ss_dssp ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEE
T ss_pred CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhhe
Confidence 0012456888888777877777766669999988776544321 135699998887 66654 45555 5899
Q ss_pred EeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc-ccccCCCCeEEEE
Q 006424 355 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQ 425 (645)
Q Consensus 355 wd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~i~~i~ 425 (645)
||..++....+.. ....|.++...++|. +.+|+.++-|..|+........ ..... ........|.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~--~~~~~~~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN--IRNIPYKNSLSDNVVSCIV 363 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE--ECCCTTSSSCSCSSEEEEE
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE--EcCCCCCCCCCCCeeEEEE
Confidence 9988877665432 235699999998886 6678888888889876544321 11110 1111235799999
Q ss_pred EcCCCCcEEEEEECCCeEEEEECCcc-eeeEeec-------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 426 FSRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 426 ~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~-------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
..++| .|..|+.++.|..||.... ...+... .....|.++..+++++.|..|+.++-|.+||..++.
T Consensus 364 ~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 364 EDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp ECTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred ECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 98886 4667888888999997633 2222211 124578999999999856667777779999988764
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.71 E-value=4.6e-08 Score=99.21 Aligned_cols=267 Identities=11% Similarity=-0.032 Sum_probs=155.0
Q ss_pred eEEEEeCCC----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe----------CCCcEEEEeCCCCcEEEe
Q 006424 300 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 300 ~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~ 365 (645)
.+++...++ +|.+.|..+++.+..+.....- .+.++| ++++++++. .++.|.+||+.+.+....
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 344444444 8889999999999998633333 799999 888888876 368899999999888765
Q ss_pred eccC--------CCeEEEEEccCCCEEEEEec--CCeEEE--EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 366 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 366 ~~~~--------~~v~~l~~sp~g~~l~~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
.... .....+.++|||++++++.. +..+.+ +|..+ ...+...+ . ..+.|+|...
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~------~----~~~~p~g~~~ 177 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS------C----FHIHPGAAAT 177 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS------C----CCCEEEETTE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC------c----eEEccCCCeE
Confidence 4322 34678999999999999875 457888 88876 22232211 1 1234555566
Q ss_pred EEEEECCCeEEEEECCc----ceeeEe-----ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCc
Q 006424 434 IMITSEDSKLRILDGVD----VIHKFK-----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 504 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~----~~~~~~-----~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~ 504 (645)
+++.+.|+.+.+.|... ...... ......+. . ++++..++..+. +.|.+.|+.+............
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 67777788888888654 111110 11122333 3 677777666667 9999999865421110000000
Q ss_pred ---ceeeeeecCCcEEEEecCCCCccccccCC-C-C--c--cccCccccccccCC--ccCCCCccccCccccCCCCCCcC
Q 006424 505 ---RSCEHFFSEGVSVAVQWPGIGTEQKSLCS-S-S--L--RDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGS 573 (645)
Q Consensus 505 ---~~~~~~~~~g~~~~v~~s~~~~~l~~~~~-~-~--~--~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s 573 (645)
.....+.+.+.- .++++|++..++.... . . + .....+++...... .+. -+....+++|+|||+.+..
T Consensus 253 ~~~~~~~~~~p~g~~-~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 253 ESGRKADNFRSAGFQ-MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp CTHHHHTTEEECSSS-CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEE
T ss_pred cccccccccccCcce-eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceEEECCCCCEEEE
Confidence 000001111110 0245555555543211 0 0 0 00011223211111 111 1235788999999996655
Q ss_pred CCC-CCCcCCCCCCccC
Q 006424 574 ATW-PAEKLPLWDVTID 589 (645)
Q Consensus 574 ~s~-~d~~i~iWd~~~~ 589 (645)
+.. .++.|.++|+.++
T Consensus 331 a~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 331 ANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEETTTTEEEEEESSSC
T ss_pred EccCCCCeEEEEECCCC
Confidence 554 5889999999987
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=1.5e-06 Score=96.30 Aligned_cols=197 Identities=9% Similarity=0.027 Sum_probs=128.5
Q ss_pred CCeEEEEeC------CCcEEEEecCCCeEEEEecCCCc---------------------------------EEEEEEeeC
Q 006424 298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPI 338 (645)
Q Consensus 298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~---------------------------------v~~l~~~p~ 338 (645)
++.++.++. ++.|+.+|..+|+.+..+..... ...++++|
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~- 252 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA- 252 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence 455555543 68999999999998877642110 12467888
Q ss_pred CCCEEEEEeCCC-------------------cEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCC---CEEEE
Q 006424 339 DDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDG---KGFIV 386 (645)
Q Consensus 339 ~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g---~~l~~ 386 (645)
+++.++.++.++ .|..+|.++++.+-... +. .....+....+| ..+++
T Consensus 253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 778888877664 49999999998765322 21 122333444577 68899
Q ss_pred EecCCeEEEEEecCCceeeeEEeecccc-----ccCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006424 387 GSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMIT 437 (645)
Q Consensus 387 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~------------------------~i~~i~~s~~g~~~l~~~ 437 (645)
++.+|.++++|..+++.... ..+.... ...+. .-..++++|++ .++++.
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~-~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~ 410 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISA-KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP 410 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEE-EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred ECCCCEEEEEECCCCCEecc-ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence 99999999999998876432 1111000 00000 01256888886 566654
Q ss_pred EC-------------------------------------------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC
Q 006424 438 SE-------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 474 (645)
Q Consensus 438 s~-------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~ 474 (645)
.. .+.|..||..+........ +..++.+..+..++.
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~ 489 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN 489 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence 32 2789999987655544442 233444555677888
Q ss_pred EEEEEeCCccEEEEeCCCCCcCCC
Q 006424 475 HIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 475 ~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
+++.++.||.+++||..+++....
T Consensus 490 ~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 490 VVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCcEEEEECCCCceeee
Confidence 999999999999999999975443
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.69 E-value=2.4e-06 Score=94.82 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=126.7
Q ss_pred CCeEEEEe------CCCcEEEEecCCCeEEEEecCC--C------------------------------cEEEEEEeeCC
Q 006424 298 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID 339 (645)
Q Consensus 298 ~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~--~------------------------------~v~~l~~~p~~ 339 (645)
++.++.++ .++.|..||..+|+.+-.+... . .-..++++| +
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~ 245 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E 245 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence 45555543 3689999999999987766410 0 012567888 7
Q ss_pred CCEEEEEeCCCc-------------------EEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---EEEEE
Q 006424 340 DNYFISGSIDGK-------------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG 387 (645)
Q Consensus 340 ~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~l~~g 387 (645)
.++++.++.++. |..+|.++++.+-... +. ..........+|+ .++.+
T Consensus 246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 788888887763 9999999998775322 21 1122223333665 78889
Q ss_pred ecCCeEEEEEecCCceeeeEEeeccc----------------------cccC-----------CCCeEEEEEcCCCCcEE
Q 006424 388 SITGTCHFYKASGNDLKLEKVDFHDR----------------------KKTS-----------GNKITGIQFSRDESQRI 434 (645)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------~~~~-----------~~~i~~i~~s~~g~~~l 434 (645)
+.+|.++++|..+++..... .+... .... ...-..++++|+. .++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~-~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~ 403 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAK-GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLV 403 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEE-ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEE
T ss_pred CCCCeEEEEECCCCCEeccc-cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEE
Confidence 99999999999888764211 10000 0000 0011236788875 466
Q ss_pred EEEEC---------------------------------------------CCeEEEEECCcceeeEeecCCCCCeEEEEE
Q 006424 435 MITSE---------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASF 469 (645)
Q Consensus 435 ~~~s~---------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~ 469 (645)
++... +|.|+.||..+.........+ .+.....+
T Consensus 404 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~ 482 (689)
T 1yiq_A 404 YIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTL 482 (689)
T ss_dssp EEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred EEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccc
Confidence 65422 377999998866555444322 23333456
Q ss_pred ecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 470 TTTGKHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 470 sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
+..+.++++|+.||.++.||.++++..+..
T Consensus 483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 483 STAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eECCCEEEEECCCCcEEEEECCCCccceee
Confidence 678889999999999999999999765543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=6.8e-09 Score=106.44 Aligned_cols=220 Identities=11% Similarity=0.026 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCe
Q 006424 211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 290 (645)
Q Consensus 211 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 290 (645)
++..+++++.||.|..||..+++. +..+.. +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---------------------------------------------~W~~~~--~~~ 40 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---------------------------------------------KWTLKE--DPV 40 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---------------------------------------------EEEEEC--CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---------------------------------------------EEEecC--CCc
Confidence 567899999999999999988543 222222 233
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424 291 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 291 ~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 366 (645)
.+..+..++ .+++++.|+.|+.||..+|+.+..+... ..+.+ ..+. .+..+++++.|+.|+.||..+++.....
T Consensus 41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 333333455 6777789999999999988876655422 11111 1111 3456788888999999999998876543
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR 444 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~ 444 (645)
.... ...++|++..+++++.++.|+.||..+++.... ..... .....+.++. ...+++++.||.|+
T Consensus 119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCE-EEEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eeccc--------ccCccccCCccccceEEEECCCCEEE
Confidence 3322 234567888999999999999999988765332 11111 1112233321 03577789999999
Q ss_pred EEECCcceeeEeecCCCCCeEE-EEEecCCCEE----EEEeCCccEEEEeCCCCC
Q 006424 445 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 445 iwd~~~~~~~~~~~~~~~~i~~-v~~sp~~~~l----~t~s~dg~I~iwd~~~~~ 494 (645)
.||..+........ ...++.. ..++++|... +.+ ++.++.+|..+++
T Consensus 187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence 99987554444432 2344443 3444555432 122 3455556655544
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.67 E-value=6.6e-07 Score=94.50 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=131.0
Q ss_pred CeEEEEE-c-CCC-eEEEEe------------------CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424 289 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 289 ~V~~l~~-s-~~~-~l~s~s------------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s 347 (645)
....+++ + |++ +++.++ .++.+.+.|.++.+.+..+.-......++++| +++++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence 4556666 3 665 666653 34689999999999888876444567788999 888888887
Q ss_pred CCC--------------------------------------cEEEEeCCC--CcE-EEeeccCCCeEEEEEccCCCEEEE
Q 006424 348 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV 386 (645)
Q Consensus 348 ~dg--------------------------------------~i~vwd~~~--~~~-~~~~~~~~~v~~l~~sp~g~~l~~ 386 (645)
.+. .|.+.|.++ ++. ...........++.++|||+++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 553 477777776 333 444444556788999999998887
Q ss_pred Ee-cCCeEEEEEecCCcee------ee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-------
Q 006424 387 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV------- 451 (645)
Q Consensus 387 g~-~dg~i~iwd~~~~~~~------~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~------- 451 (645)
++ .+.+|.++|+.+.... .. .+.. ....+.....++|+|+| ..+++.--|++|.+||+...
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence 66 5789999999854210 00 0000 01123567899999998 77777888999999996541
Q ss_pred -----eeeEeecCCCCCe-----EEEEEecCCCEEEEEeC---Ccc----------EEEEeCCCCC
Q 006424 452 -----IHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCR----------VYVWNYDELC 494 (645)
Q Consensus 452 -----~~~~~~~~~~~~i-----~~v~~sp~~~~l~t~s~---dg~----------I~iwd~~~~~ 494 (645)
+..+.. +..+- .++.++|||++|+++.. |+. -.++|+.+++
T Consensus 370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 122222 22211 12245799999998753 332 1778885543
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=9.5e-06 Score=77.69 Aligned_cols=206 Identities=9% Similarity=0.032 Sum_probs=134.3
Q ss_pred ceeeccCcc--CeEEEEEcCCCeEEEEe-C--CCcEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 280 LQELHGHKG--DVLDLAWSNSNYLLSCS-M--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 280 ~~~l~~h~~--~V~~l~~s~~~~l~s~s-~--dg~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
+.++. |.. ....+.|++++.|+.++ . ++.|.+.|+.+++.+..+.... ....+++. .+.+.++.-.++.+
T Consensus 12 v~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 12 LNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred EEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence 34443 443 36799999988655544 2 5899999999999998875333 23345554 23444555567899
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
.++|..+.+.+...... .-....+++||+.++++..++.|.++|..+.+... .+..... ...-...+.+.|. +| .
T Consensus 89 ~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~Vg~~-~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHNVKYN-GHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEECEET-TEECCCEEEEEEE-TT-E
T ss_pred EEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEEECCC-CcccccceeEEEE-CC-E
Confidence 99999998877654333 11224466788888888888999999998776533 3332221 0011246678888 65 5
Q ss_pred EEEEEECCCeEEEEECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEE-EEEeCCccEEEEeCCCC
Q 006424 433 RIMITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l-~t~s~dg~I~iwd~~~~ 493 (645)
.++....++.|.+.|..+. ...+... .......+++|+|+++.+ +++...+.+++-++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5555556899999998743 3333321 112356899999998755 55557788988888654
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.62 E-value=7.7e-06 Score=83.79 Aligned_cols=183 Identities=7% Similarity=-0.002 Sum_probs=118.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~------~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 371 (645)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.++.++.+..+|..+++.........+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 5688889999999999999999887775443332 2222 245677888899999999998887653332211
Q ss_pred e-----E---EEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424 372 I-----S---AICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441 (645)
Q Consensus 372 v-----~---~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg 441 (645)
. . .+...| .+..+++++.+|.+..+|..+++.... ... .....+... + ..+++++.++
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~---~~~------~~~~~~~~~--~-~~l~~~~~~g 287 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK---REL------GSVNDFIVD--G-NRIYLVDQND 287 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE---ECC------CCEEEEEEE--T-TEEEEEETTC
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee---ccC------CCCCCceEE--C-CEEEEEcCCC
Confidence 0 0 011111 356788888899999999987765422 111 223444443 3 4788888999
Q ss_pred eEEEEECCcceeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 442 KLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 442 ~I~iwd~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
.|..+|..+........ .....+..... .+..|+.++.+|.|+++|..+++...
T Consensus 288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999987655444432 11122222222 35788889999999999999886443
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.62 E-value=6.1e-07 Score=99.40 Aligned_cols=193 Identities=14% Similarity=0.094 Sum_probs=123.9
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc------------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
++.++.++.++.|..+|..+|+.+-.+..... ...+++ .+..+++++.|+.|..+|..+++.+-.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 56888888899999999999999888753211 122333 356788888999999999999887754
Q ss_pred eccC------CCeEE-EEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccc-----------------
Q 006424 366 ADVR------DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK----------------- 415 (645)
Q Consensus 366 ~~~~------~~v~~-l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~----------------- 415 (645)
.... ..+.+ ... .+..+++++. +|.|+.||..+++..... .......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~-~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW-FSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE-ESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred ecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe-ccCCCCcccccccccccccccccc
Confidence 3322 11211 111 2445666554 689999999988764332 2111100
Q ss_pred ---------cCCCCeEEEEEcCCCCcEEEEEECCC-------------------eEEEEECCcceeeEee--cCCC----
Q 006424 416 ---------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKG--LPKS---- 461 (645)
Q Consensus 416 ---------~~~~~i~~i~~s~~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~--~~~~---- 461 (645)
........++++|++ ..++.++.++ .|..+|..+....... ..+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred ccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 011122357888886 6777777664 4888887755444332 2121
Q ss_pred ---CCeEEEEEecCC---CEEEEEeCCccEEEEeCCCCCcCC
Q 006424 462 ---GSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 462 ---~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
....-+....+| +.++.++.+|.++++|..+++...
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 223334444577 689999999999999999987543
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=1.3e-06 Score=97.05 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=122.0
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc-----------E-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-----------v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
++.++.++.++.|..+|..+|+.+-.+..... + ..+.. .+..+++++.|+.|+.+|..+++.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 56888888899999999999999888753211 0 12233 356788888999999999999987753
Q ss_pred eccC---CCeEEEEEcc---CCCEEEEEe------cCCeEEEEEecCCceeeeEEeeccccc------------------
Q 006424 366 ADVR---DVISAICYIP---DGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRKK------------------ 415 (645)
Q Consensus 366 ~~~~---~~v~~l~~sp---~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------ 415 (645)
.... .....+..+| ++ .+++++ .+|.|+.||..+++.............
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 3221 1111111122 44 455554 368999999998876443221110000
Q ss_pred ------cCCCCeEEEEEcCCCCcEEEEEECCCe-------------------EEEEECCcceeeEeec--CCC-------
Q 006424 416 ------TSGNKITGIQFSRDESQRIMITSEDSK-------------------LRILDGVDVIHKFKGL--PKS------- 461 (645)
Q Consensus 416 ------~~~~~i~~i~~s~~g~~~l~~~s~dg~-------------------I~iwd~~~~~~~~~~~--~~~------- 461 (645)
........++++|++ .+++.++.++. |..+|..+........ .+.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp THHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 011122357888876 68888887764 9999987655444332 121
Q ss_pred CCeEEEEEecCCC---EEEEEeCCccEEEEeCCCCCcC
Q 006424 462 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 462 ~~i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
..........+|+ .++.++.+|.++++|..+++..
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 1222233334665 7889999999999999999754
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.60 E-value=6.9e-06 Score=77.63 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=126.9
Q ss_pred cccccccccC--cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 192 TSQEIQAHKG--CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 192 ~~~~l~~H~~--~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
..+++ .|.. -...+.|+ ++.+..+.+.+|.|+++|+.+++..
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------------- 88 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------------- 88 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS----------------------------------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE----------------------------------
Confidence 34444 3433 35788887 4677788888999999999985432
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
..+-....---.+++..+...+..-.++.+.+||..+.+.+.++.....-..+++ +++.|+.+..+
T Consensus 89 -----------~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs 154 (268)
T 3nok_A 89 -----------WMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGG 154 (268)
T ss_dssp -----------EEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSS
T ss_pred -----------eEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCC
Confidence 2221111111235554444555566789999999999999999975554455554 56777777778
Q ss_pred CcEEEEeCCCCcEEEeecc---C---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-------ccc
Q 006424 350 GKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKT 416 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~~---~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~ 416 (645)
+.|.++|..+.+....... . ..++.+.|. +|+..+....++.|.+.|..+++.. ..+.+.+. ...
T Consensus 155 ~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~ 232 (268)
T 3nok_A 155 TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTN 232 (268)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCC
T ss_pred CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccC
Confidence 9999999999877653322 1 245667776 7765544446889999999888753 34444321 111
Q ss_pred CCCCeEEEEEcCCCCcEEEEE
Q 006424 417 SGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 417 ~~~~i~~i~~s~~g~~~l~~~ 437 (645)
.....+.|+++|++..++++|
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEeC
Confidence 235678999999875666655
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.58 E-value=5.4e-09 Score=107.19 Aligned_cols=184 Identities=8% Similarity=0.023 Sum_probs=101.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eecc-CCCeE-E
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDVIS-A 374 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-~~~v~-~ 374 (645)
++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.|+.|+.||..+++.+. +..+ ...+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 46899999999999999999999888766 5555555555 66678888899999999998876543 2111 11110 0
Q ss_pred EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 454 (645)
Q Consensus 375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~ 454 (645)
..+. .+..+++++.++.++.||..+++.... +... . ...++|++ ..+++++.|+.|+.||..+....
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~---~~~~-----~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT---LSSA-----F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE---ecCC-----C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence 1111 345678888999999999988765322 1111 1 13345665 68888999999999997643322
Q ss_pred EeecCCCCCeEEEEEecCC---CEEEEEeCCccEEEEeCCCCCcCCC
Q 006424 455 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 455 ~~~~~~~~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
...... ......++++. ..+++++.||.|+.||..+++..+.
T Consensus 154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 221100 01122233332 5677788999999999998865443
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.57 E-value=1e-05 Score=82.59 Aligned_cols=190 Identities=7% Similarity=0.026 Sum_probs=124.5
Q ss_pred CCC--eEEEEeCCCcEEEEecCCC----eEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEe
Q 006424 297 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD--------HHNYVTCVQFNPIDDNYFISGSID------GKVRIWG 356 (645)
Q Consensus 297 ~~~--~l~s~s~dg~I~iwd~~~~----~~~~~~~--------~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd 356 (645)
.++ .++++..++.|.++|+.+. +....+. .......+...| ++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 555 5667788899999999755 6666662 112456677888 77 77776655 7899999
Q ss_pred CCCCcEEEeeccC----CCeEEEEEccCCCEEEEEe-------------------cCCeEEEEEecCCceeeeEEeeccc
Q 006424 357 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR 413 (645)
Q Consensus 357 ~~~~~~~~~~~~~----~~v~~l~~sp~g~~l~~g~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 413 (645)
..+.+++...... ..-..+.|+|+++.+++.. .+.+|.+||+.+.+. ...+.....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~~ 249 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGEE 249 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCTT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCCC
Confidence 9998877644322 2244588899999888874 368999999987643 334443210
Q ss_pred cccCCCCeEEEEE--cCCCCcEEEEEE-----CCCeEEEEECCcc----eeeEeecC----------------CCCCeEE
Q 006424 414 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLP----------------KSGSQMS 466 (645)
Q Consensus 414 ~~~~~~~i~~i~~--s~~g~~~l~~~s-----~dg~I~iwd~~~~----~~~~~~~~----------------~~~~i~~ 466 (645)
+.....+.| +|++...++++- .+++|.+|..... .+.+.... .......
T Consensus 250 ----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 250 ----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp ----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred ----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 123445555 999844444444 6678877653211 11110000 0245778
Q ss_pred EEEecCCCEEEEEeC-CccEEEEeCCCC
Q 006424 467 ASFTTTGKHIISIGD-DCRVYVWNYDEL 493 (645)
Q Consensus 467 v~~sp~~~~l~t~s~-dg~I~iwd~~~~ 493 (645)
+.+|+||++|.++.. .+.|.+||+...
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 999999999988775 689999999643
No 243
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=6.1e-05 Score=74.61 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=136.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
.....++|+++|+++++-..++.|..||..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------------------------~ 65 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------------------Q 65 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------------------------E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------------------------E
Confidence 457789999999977777788889888865410 1
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEe--CCC-cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCS--MDK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s--~dg-~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
..+ ........+++.+++.++.+. .++ .|..+|..+++...... .......++..+ ++..+++-..++.|+.+
T Consensus 66 ~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~ 143 (306)
T 2p4o_A 66 IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI 143 (306)
T ss_dssp EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred EEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence 111 112357889999988555444 222 46677777776544332 222334555544 44444544458899999
Q ss_pred eCCCCc--EEEee---------ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC-CceeeeEEeeccccccCCCCeE
Q 006424 356 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 356 d~~~~~--~~~~~---------~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~ 422 (645)
|..++. +.... ..-...+.+ +|+++.|+++. ..+.|..|++.. ........... .....
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~ 215 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID 215 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence 987643 22111 111234555 78888776665 467899999875 22111111111 12356
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEEEEe---cCCCEEEEEeCCc
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDDC 483 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v~~s---p~~~~l~t~s~dg 483 (645)
.+++.++| +++++....+.|.++|........ .........++++|. |+++.|+.++..+
T Consensus 216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 78999998 677777778899999965322222 122233568999998 8888777766543
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=1.4e-05 Score=75.49 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=123.6
Q ss_pred ccccccccccC--cEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424 191 YTSQEIQAHKG--CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 266 (645)
Q Consensus 191 ~~~~~l~~H~~--~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (645)
...+++ .|.. -...+.|+ ++.+..+++.+| .|+++|+.+++...
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~------------------------------ 79 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ------------------------------ 79 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE------------------------------
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE------------------------------
Confidence 344555 3443 34789998 677777777776 89999999854432
Q ss_pred ecCCCceeccCCCceeeccCccCe--EEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 006424 267 VIPDEVFQIEESPLQELHGHKGDV--LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V--~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 344 (645)
.+.-. ... -.++...+...+..-.++.+.++|..+.+.+..+.....-..++ + +++.|+
T Consensus 80 ---------------~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~ 140 (262)
T 3nol_A 80 ---------------QIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLI 140 (262)
T ss_dssp ---------------EEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEE
T ss_pred ---------------EEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEE
Confidence 22111 111 22444333344445568999999999999999997554334444 4 666666
Q ss_pred EEeCCCcEEEEeCCCCcEEEeecc---C---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc---
Q 006424 345 SGSIDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--- 415 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~~~~~---~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 415 (645)
.+..++.|.++|..+.+....... . ..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+.+.+...
T Consensus 141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~ 218 (262)
T 3nol_A 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAG 218 (262)
T ss_dssp ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSC
T ss_pred EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccc
Confidence 666678899999998776653222 1 334567776 6765555556889999999888763 3444432211
Q ss_pred ---cCCCCeEEEEEcCCCCcEEEEE
Q 006424 416 ---TSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 416 ---~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
......+.|+|+|++..++++|
T Consensus 219 ~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp SCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEEC
Confidence 1234678999999974444444
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.53 E-value=7.4e-06 Score=81.95 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=118.9
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-Eee
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA 366 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~ 366 (645)
.+.++...+++.++.++.++.|..+|.. ++....+. ....+.++...+ ++.++ .++ +.|..+| .+++.. ...
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc
Confidence 4455566667788889989999999998 77766654 334566677765 56544 444 8899999 555443 444
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.....+.++...++| .+.+++.++.+..+|..+.. ........ ..+.++...+++ .+.+++.+|.|..+
T Consensus 212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~--~~~~~~~~------~~~~~~~~~~~g--~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTE--KWRFKTGK------RIESSPVIGNTD--TIYFGSYDGHLYAI 280 (330)
T ss_dssp CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCE--EEEEECSS------CCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred cCCcceeceEECCCC-eEEEEcCCCeEEEECCCCCE--eEEeeCCC------CccccceEcCCC--eEEEecCCCCEEEE
Confidence 444668888888877 46667778888888743322 22222111 223345556565 67788889899999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
|.. .............+.++..+++|. |..++.+|.+++......
T Consensus 281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 953 222222222345566777777776 556788999999876543
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=0.0002 Score=69.24 Aligned_cols=218 Identities=8% Similarity=-0.044 Sum_probs=131.7
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 201 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
..+..++|++++..|. +-..++.|..++..... .
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---------------------------------------------~ 70 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------------------------------------------P 70 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------------------------------------------C
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---------------------------------------------c
Confidence 3578999999765554 55567889999886521 1
Q ss_pred ceeeccCccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---CCcEE
Q 006424 280 LQELHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR 353 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~---dg~i~ 353 (645)
...+.........++++++ +.++ +-...+.|.+++++......... .......++++| ++..|+.+.. .+.|.
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence 1111112245678999885 5544 44556889999987433222222 224678999999 6666655554 36888
Q ss_pred EEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424 354 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 354 vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
.+++.......+. ..-.....++++|++..|+++. ..+.|..+|..+.... ... .. ......++.. +.
T Consensus 150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~--~~-----~~~P~gi~~d--~~ 219 (267)
T 1npe_A 150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVL--EG-----LQYPFAVTSY--GK 219 (267)
T ss_dssp EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEE--EC-----CCSEEEEEEE--TT
T ss_pred EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEe--cC-----CCCceEEEEe--CC
Confidence 8888754433322 2334678999999887776665 4578999998753321 111 11 1334566654 32
Q ss_pred cEEEEEECCCeEEEEECCcceeeEeecCCC-CCeEEEEEecCCC
Q 006424 432 QRIMITSEDSKLRILDGVDVIHKFKGLPKS-GSQMSASFTTTGK 474 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~i~~v~~sp~~~ 474 (645)
.++++....+.|..+|.............. ....++++.|++.
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 555555567899999976443322222122 2366778887764
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.48 E-value=0.00047 Score=78.06 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=158.3
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
...|.++...++|.+.+. +.+| |.+||..+......... ...
T Consensus 262 ~~~i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~------------------------------------~~~ 303 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIG-TFND-LNIYHEGTDSFASYSSN------------------------------------PVE 303 (795)
T ss_dssp CSBEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCC------------------------------------TTS
T ss_pred CCeEEEEEEcCCCCEEEE-eCCh-hheEcCCCCeEEEEecC------------------------------------CCC
Confidence 356999999888875543 3444 88888765322110000 000
Q ss_pred ceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
.. .-....|.++...++|.|..|+.++-|..|+..++....... ....|.++...+ +++ |-.|+.++-|
T Consensus 304 ~~--~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl 379 (795)
T 4a2l_A 304 NG--SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGL 379 (795)
T ss_dssp TT--SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCE
T ss_pred CC--CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCe
Confidence 00 012457999999888888899998899999976554322211 234689998876 555 5557777789
Q ss_pred EEEeCCCCcEEEeec---------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424 353 RIWGVCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 423 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~---------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~ 423 (645)
..||..++....+.. ....|.++...++|+.|.+|+.++-+..||..+..... +... ........|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~--~~~~-~~~l~~~~v~~ 456 (795)
T 4a2l_A 380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN--FNQR-NSQLVNENVYA 456 (795)
T ss_dssp EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE--ECTT-TSCCSCSCEEE
T ss_pred EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE--eecC-CCCcCCCeeEE
Confidence 999998877665431 13568999988888868888888889999988765322 1110 11122467899
Q ss_pred EEEcCCCCcEEEEEECCCeEEEEECCccee-eEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 424 IQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+...++| . |..|+. +.+.+||..+... .+.. ......|.++..+++|.+.+.+. +-+..||..+..
T Consensus 457 i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 457 ILPDGEG-N-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp EEECSSS-C-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred EEECCCC-C-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 9988887 4 444555 4588898664322 1211 11236789999999988766554 558888876653
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=3.6e-05 Score=72.74 Aligned_cols=193 Identities=8% Similarity=0.044 Sum_probs=123.8
Q ss_pred ceeeccCccC--eEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCcEE
Q 006424 280 LQELHGHKGD--VLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVR 353 (645)
Q Consensus 280 ~~~l~~h~~~--V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~dg~i~ 353 (645)
+.++ .|... ...+.|+ ++ .+.+.+.+| .|+++|+.+++.+...............+ .++.+ +..-.++.+.
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-WKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEEE
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-eCCEEEEEEeeCCEEE
Confidence 4455 35443 4788998 56 555666665 89999999999998887555544433333 34444 4444588999
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
+||..+.+.+........- ..++++++.|+.+..++.|.++|..+.+... .+...... ..-..++.+.|. +| ..
T Consensus 111 v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~-~I~V~~~g-~~~~~lNELe~~-~G-~l 184 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVR-TITVTAHG-EELPELNELEWV-DG-EI 184 (262)
T ss_dssp EEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEE-EEECEETT-EECCCEEEEEEE-TT-EE
T ss_pred EEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEE-EEEeccCC-ccccccceeEEE-CC-EE
Confidence 9999998887655444322 3344678888887778889999998876533 33332110 001334557776 55 55
Q ss_pred EEEEECCCeEEEEECCcc--eeeEeec----------CCCCCeEEEEEecCCCEEEEEeC
Q 006424 434 IMITSEDSKLRILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~--~~~~~~~----------~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
++..-.++.|.+.|..+. ...+... ......++++|+|+++.|+..+.
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 555556889999997643 2233221 11245689999999887777664
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=0.00011 Score=68.85 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=123.3
Q ss_pred ccccccccc--CcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424 192 TSQEIQAHK--GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 267 (645)
Q Consensus 192 ~~~~l~~H~--~~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (645)
..+++ .|. .-...+.|++ +.+..+.+.+| .|+.+|+.+++...
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~------------------------------- 57 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ------------------------------- 57 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE-------------------------------
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE-------------------------------
Confidence 33444 354 3467899986 66666777654 89999999854432
Q ss_pred cCCCceeccCCCceeeccCcc-CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 268 IPDEVFQIEESPLQELHGHKG-DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
...-... ---.++...+......-.++.+.++|..+.+.+.++.....-..++. ++..|+.+
T Consensus 58 --------------~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~---dg~~L~vS 120 (243)
T 3mbr_X 58 --------------RAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTS---DDSHLYMS 120 (243)
T ss_dssp --------------EEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEE---CSSCEEEE
T ss_pred --------------EEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEee---CCCEEEEE
Confidence 2211111 11223443333444556789999999999999999976554455554 56666666
Q ss_pred eCCCcEEEEeCCCCcEEEeeccC------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-----
Q 006424 347 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----- 415 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~~~------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----- 415 (645)
..++.|.++|..+.+........ ..++.+.+. +|+..+..-.+..|.+.|..+++.. ..+.+.+...
T Consensus 121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~ 198 (243)
T 3mbr_X 121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADAL 198 (243)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSC
T ss_pred CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccc
Confidence 66889999999997766533221 245666665 6665555546889999999988763 3444432211
Q ss_pred --cCCCCeEEEEEcCCCCcEEEEE
Q 006424 416 --TSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 416 --~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
......+.|+++|++..++++|
T Consensus 199 ~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 199 TDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cCCcCCceEEEEEcCCCCEEEEEC
Confidence 1234678999999875555554
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.40 E-value=7.1e-06 Score=82.08 Aligned_cols=174 Identities=18% Similarity=0.074 Sum_probs=112.5
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEE
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAI 375 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l 375 (645)
++.+..++.++.|..+|.. ++....+. ....+.++...+ ++. +..++.++.|..+|.. ++.. ........+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6788889999999999998 77665554 333455666665 454 6667788999999998 6554 343344567777
Q ss_pred EEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424 376 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 455 (645)
Q Consensus 376 ~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~ 455 (645)
...+++.. .+++ +.+..+| .+..... ..... ...+.++...++| .+.+++.++.|..+|..... ..
T Consensus 183 ~~d~~g~l-~v~t--~~l~~~d-~~g~~~~-~~~~~------~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~-~~ 248 (330)
T 3hxj_A 183 SIGKDGTI-YFGS--DKVYAIN-PDGTEKW-NFYAG------YWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTE-KW 248 (330)
T ss_dssp EECTTCCE-EEES--SSEEEEC-TTSCEEE-EECCS------SCCCSCCEECTTS--CEEEEETTTEEEEECTTSCE-EE
T ss_pred EEcCCCEE-EEEe--CEEEEEC-CCCcEEE-EEccC------CcceeceEECCCC--eEEEEcCCCeEEEECCCCCE-eE
Confidence 77777764 4455 8888998 4443322 11111 2457778888886 56777888888888853222 12
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
........+..+.+.+++ .|..++.+|.|..+|.
T Consensus 249 ~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 249 RFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 221122333445555555 5667778888999985
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=5.7e-05 Score=71.40 Aligned_cols=183 Identities=10% Similarity=0.051 Sum_probs=121.8
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEE--EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC--VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 366 (645)
-...+.|+.+..+.+.+.+|.|+++|+++++.+... ....... +++. .+.+.+..-.++.+.+||..+.+.+...
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 347888885446778888899999999999988877 4444444 5543 3455555556899999999998887755
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.....-..++ ++++.|+++..++.|.++|..+.+.. ..+....... .-..++.+.|. +| ..++..-.++.|.+.
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~V~~~g~-~v~~lNeLe~~-dG-~lyanvw~s~~I~vI 206 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-GAVQVKLRGQ-PVELINELECA-NG-VIYANIWHSSDVLEI 206 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEE-EEEECEETTE-ECCCEEEEEEE-TT-EEEEEETTCSEEEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-EEEEeCCCCc-ccccccccEEe-CC-EEEEEECCCCeEEEE
Confidence 4443333444 67888888888999999999887653 3333322110 11345667777 55 555555568899999
Q ss_pred ECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEEEEEe
Q 006424 447 DGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 447 d~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l~t~s 480 (645)
|..+. ...+... ......++|+++|+++.|+..+
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 97643 2233221 1234678999999876655554
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=0.0011 Score=74.90 Aligned_cols=284 Identities=9% Similarity=0.065 Sum_probs=159.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC-CCcccCCCCceEEecccC--CCcceeec-CCCceecc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFGSNAKEGKIKFGKKK--SSHVPVVI-PDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ 276 (645)
..|.++...++|..|..|+.++-+..||..+........... ...... .....+.... ....-+.. ...++..+
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~--~~i~~i~~d~~~~g~lwi~t~~~gl~~~~ 143 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLIT--NDVTHITSSVQAGKGLWVCTYYRGIEYLD 143 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSC--SCEEEEEECSSTTSEEEEEESSSCEEEEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCccc--CcceEEEecCccCCCEEEEECCCCeeEEE
Confidence 459999999888745567777458999987654332211100 000000 0000111111 11111111 11222111
Q ss_pred --CCCceeec------cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeCCC
Q 006424 277 --ESPLQELH------GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDD 340 (645)
Q Consensus 277 --~~~~~~l~------~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~~~ 340 (645)
......+. -....|.++...+++.|..++.++-+..||..+++...... ....|.++...+ ++
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g 222 (781)
T 3v9f_A 144 IATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NG 222 (781)
T ss_dssp TTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT-TC
T ss_pred CCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CC
Confidence 11122221 11345888888778888888887679999988776543211 135688888876 66
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE----
Q 006424 341 NYFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV---- 408 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---- 408 (645)
.+.+ |+.+ -+.+||..+++...+.. ....|.++...++|. +.+|+..+-|.++|..+........
T Consensus 223 ~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~ 299 (781)
T 3v9f_A 223 NIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFE 299 (781)
T ss_dssp CEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CE
T ss_pred CEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccc
Confidence 6554 4545 69999988776554321 235688998887774 6667776678888887654322111
Q ss_pred ---eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEee--------cCCCCCeEEEEEecCCCEE
Q 006424 409 ---DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKG--------LPKSGSQMSASFTTTGKHI 476 (645)
Q Consensus 409 ---~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~--------~~~~~~i~~v~~sp~~~~l 476 (645)
............|.++...++| .|-.|+.++.|..++.... ...+.. ......|.++..+++|.+.
T Consensus 300 ~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW 377 (781)
T 3v9f_A 300 FIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW 377 (781)
T ss_dssp EECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE
T ss_pred cccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE
Confidence 0000111234678999998887 4677787888889986532 222211 1123568999888877654
Q ss_pred EEEeCCccEEEEeCCCC
Q 006424 477 ISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 477 ~t~s~dg~I~iwd~~~~ 493 (645)
.|+.++-|..||..+.
T Consensus 378 -igt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 378 -IGTDGGGINVFENGKR 393 (781)
T ss_dssp -EEEBSSCEEEEETTEE
T ss_pred -EEeCCCcEEEEECCCC
Confidence 5566667888987654
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.37 E-value=0.00018 Score=67.41 Aligned_cols=195 Identities=7% Similarity=0.003 Sum_probs=124.7
Q ss_pred ceeeccCc--cCeEEEEEcCCCeEEEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424 280 LQELHGHK--GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355 (645)
Q Consensus 280 ~~~l~~h~--~~V~~l~~s~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 355 (645)
+.++ .|. .-...+.|+++..+.+.+.+| .|+.+|+.+++.+...............+..+.+....-.++.+.+|
T Consensus 12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 3444 455 346689998744556666654 89999999999999887554444333333134455555568899999
Q ss_pred eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
|..+.+.+........-..++ ++++.|+++..++.|.++|..+.+.. ..+....... .-..++.+.+. +| ..++
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I~V~~~g~-~~~~lNeLe~~-~G-~lya 164 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV-GSIKVTAGGR-PLDNLNELEWV-NG-ELLA 164 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE-EEEECEETTE-ECCCEEEEEEE-TT-EEEE
T ss_pred ECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE-EEEEEccCCc-ccccceeeEEe-CC-EEEE
Confidence 999988877555444334444 67888888888899999999887653 3333322110 11345566665 44 5555
Q ss_pred EEECCCeEEEEECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEEEEEeC
Q 006424 436 ITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
..-.+..|.+.|..+. ...+... ......++++++|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5546789999997643 2223211 12236689999998777766653
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00067 Score=76.67 Aligned_cols=243 Identities=9% Similarity=0.062 Sum_probs=149.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..|.++...++|.+.+.. .+ -+.+||..+........ ...
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~--------------------------------------~~~ 250 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHN--------------------------------------NPG 250 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC--------------------------------------------
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEc--------------------------------------CCC
Confidence 569999998888765543 44 48888876532110000 000
Q ss_pred eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---------------CCCcEEEEEEeeCCCCEEEE
Q 006424 281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPIDDNYFIS 345 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---------------~~~~v~~l~~~p~~~~~l~s 345 (645)
....-....|.++...+++.|..|+..+-|.++|..++....... ....|.++...+ +++ |-.
T Consensus 251 ~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWi 328 (781)
T 3v9f_A 251 NIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWI 328 (781)
T ss_dssp -----CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEE
T ss_pred ccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEE
Confidence 000012456899998888888888886778999987665432111 245689998887 665 556
Q ss_pred EeCCCcEEEEeCCCCcEEEeec----------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424 346 GSIDGKVRIWGVCEKRVVDWAD----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 415 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~----------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 415 (645)
|+.++-|..++........+.. ....|.++...++|. |.+|+.++-+..||..+...... .....
T Consensus 329 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~----~~~~~ 403 (781)
T 3v9f_A 329 GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN----KENRE 403 (781)
T ss_dssp EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------
T ss_pred EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc----cCCCC
Confidence 6767779999988766544321 235688998888775 56777777788888764332111 10011
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.....|.++...++| .|.+|+.++.+..+|..... ..+.. ......|.++..++++.+.+. +. +-|..||..++
T Consensus 404 ~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASK 479 (781)
T ss_dssp CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSS
T ss_pred CCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCC
Confidence 123678899888876 46667877789999875332 22211 113467899988888765554 44 45888998765
Q ss_pred C
Q 006424 494 C 494 (645)
Q Consensus 494 ~ 494 (645)
.
T Consensus 480 ~ 480 (781)
T 3v9f_A 480 K 480 (781)
T ss_dssp S
T ss_pred e
Confidence 4
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.00031 Score=69.43 Aligned_cols=231 Identities=11% Similarity=-0.047 Sum_probs=135.6
Q ss_pred cCeEEEEEcCCCeEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEE
Q 006424 288 GDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD 364 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~ 364 (645)
.....++|++++.|+ +-..++.|..||... .....+.....+..+++.+ +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988544 444788999999875 3444445556789999999 888666554332 47777877777654
Q ss_pred eecc--CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc---ccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 365 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 365 ~~~~--~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
+... ......++..+++..+++-..+|.|..+|............... ...........+ ++++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4322 22344555555554444444588888888765322111000000 000011234555 7777455566667
Q ss_pred CCeEEEEECCc-c----eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424 440 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 514 (645)
Q Consensus 440 dg~I~iwd~~~-~----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 514 (645)
.+.|..++... . ...+.. ......++++++|++.++....+.|.++|.. +......... .+-.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~~~~ 255 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------QGVI 255 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------GTCT
T ss_pred CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------cccC
Confidence 78999999753 1 111211 1345678999999887777778899999865 3211000000 0112
Q ss_pred cEEEEecC---CCCccccccCCC
Q 006424 515 VSVAVQWP---GIGTEQKSLCSS 534 (645)
Q Consensus 515 ~~~~v~~s---~~~~~l~~~~~~ 534 (645)
...+++|. |++..|+.....
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEecccCCCCEEEEECCC
Confidence 35677777 777777755543
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.32 E-value=6.9e-05 Score=82.87 Aligned_cols=204 Identities=8% Similarity=0.072 Sum_probs=111.3
Q ss_pred CeEEEEEcCCC-eEEEEe-CCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEe-CC-----CcEEEEeCC
Q 006424 289 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVC 358 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s-~d-----g~i~vwd~~ 358 (645)
...++++..++ .++.|+ .+..+.+||..+++....-. ....-.+++..+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 34456666776 666776 34689999998776544322 222223445556 788999988 34 569999998
Q ss_pred CCcEEEeec-----cCCCeEEEEEccCCCEEEEEecCC---------eEEEEEecCCceeeeEEeecccc---ccCCCCe
Q 006424 359 EKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKI 421 (645)
Q Consensus 359 ~~~~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~i 421 (645)
+++-..+.. ....-....+..++..++.|+.+| .+..||..+...... ....... ......-
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCC
Confidence 877554311 100000011224555556665544 567888876654321 1111000 0001122
Q ss_pred EEEEEcCCCCcEEEEEECCC-----------eEEEEECCcceee-Ee-ecCCCCC-eEEEEEecCCCEEEEEeCC-----
Q 006424 422 TGIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHK-FK-GLPKSGS-QMSASFTTTGKHIISIGDD----- 482 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg-----------~I~iwd~~~~~~~-~~-~~~~~~~-i~~v~~sp~~~~l~t~s~d----- 482 (645)
.++.|...+..+++.|+.++ .|.+||.....-. .. ....... -.+++..|++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 34445442337788877532 6778886532221 11 0112222 2345667899999999864
Q ss_pred ------ccEEEEeCCCCC
Q 006424 483 ------CRVYVWNYDELC 494 (645)
Q Consensus 483 ------g~I~iwd~~~~~ 494 (645)
..+.+||..+..
T Consensus 482 ~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCSBCCCCEEEEGGGTE
T ss_pred CCCCcccceEEEcCCCCc
Confidence 468999987654
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.32 E-value=0.00041 Score=65.91 Aligned_cols=206 Identities=12% Similarity=0.200 Sum_probs=134.5
Q ss_pred eeccCccCeEEEEEcCCC-e-EEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424 282 ELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 357 (645)
.+.+-...+..++|+|++ . +++...++.|...|.. ++.+..+. .......+++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 455666789999999864 4 4457778899999998 88887764 335688889987 7766666556778999987
Q ss_pred CCCcE---EEee-------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--eeeEEeecc-ccccCCCCeEEE
Q 006424 358 CEKRV---VDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLEKVDFHD-RKKTSGNKITGI 424 (645)
Q Consensus 358 ~~~~~---~~~~-------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~i~~i 424 (645)
..... .... ..+.....++|+|.++.|+++.......+|.+..... ......... ........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65331 1111 2234568999999998888887776666776652100 111111000 001112457899
Q ss_pred EEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 425 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
+++|....+++.+.....+.++|.... ...+..... -....+|+|+++|++.++ ++-..++.+.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999986577777778889999997633 333333211 125689999999985555 77777777654
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.23 E-value=0.00016 Score=78.12 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=117.8
Q ss_pred CCeEEEEeC------CCcEEEEecCCCeEEEEecCCCcE---------------------------------------EE
Q 006424 298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 332 (645)
Q Consensus 298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~v---------------------------------------~~ 332 (645)
++.++.++. ++.|..+|..+|+.+-.+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 456666655 789999999999988776422111 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---E
Q 006424 333 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G 383 (645)
Q Consensus 333 l~~~p~~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~ 383 (645)
+++.+ ....++.++.+ +.|..+|.++++.+-... +. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56666 55666666532 359999999988765322 11 1111122334774 5
Q ss_pred EEEEecCCeEEEEEecCCceeeeEEeeccccc-------cCCCCe--------------------------EEEEEcCCC
Q 006424 384 FIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKI--------------------------TGIQFSRDE 430 (645)
Q Consensus 384 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~i--------------------------~~i~~s~~g 430 (645)
++.++.+|.++++|..+++.... ..+..... ....++ ..++++|+.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~-~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVA-EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE-EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEeCCCcEEEEEECCCCCEEee-ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 77888999999999988775432 22111000 000011 245677775
Q ss_pred CcEEEEEE-------------------------------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424 431 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 473 (645)
Q Consensus 431 ~~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~ 473 (645)
.++++.+ .++.|..||..+.....+.. ....+.+..+...+
T Consensus 398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g 475 (571)
T 2ad6_A 398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG 475 (571)
T ss_dssp -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence 4555443 34788889977544433332 11222222333456
Q ss_pred CEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 474 KHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 474 ~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
..++.++.||.|+.||..+++.....
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 78888999999999999998755443
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.00049 Score=71.52 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=137.1
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 202 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 202 ~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
....|+++| ++..|..+...+.|+.+|..+.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v 171 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------V 171 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------E
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------E
Confidence 456889998 45556655555778888876521 2
Q ss_pred eeeccCccCeEEEEEcCCC-eEEEEeCC-C----cEEEEecCCCeEE--EEecCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 281 QELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~d-g----~I~iwd~~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
..+.........++|++++ .|+.+... + .+...+.. +... ..+........++++|.++.++++-..++.|
T Consensus 172 ~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 172 STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 2222234567889999987 46666542 1 23334432 2211 2222223456778898555656665567889
Q ss_pred EEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceee---eEEeec-ccc--------ccC
Q 006424 353 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTS 417 (645)
Q Consensus 353 ~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~---~~~~~~-~~~--------~~~ 417 (645)
..++..++....+. ........++|+|+|++|+++. ..+.|..++........ ..+.-. +.. ...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 330 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR 330 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence 99999877653332 2234578999999999666554 56789998876531111 111100 000 000
Q ss_pred CCCeE-EEEEc--------CCCCcEEEEEECCCeEEEEECCcceeeEeecC----------------CCCCeEEEEEecC
Q 006424 418 GNKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT 472 (645)
Q Consensus 418 ~~~i~-~i~~s--------~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~i~~v~~sp~ 472 (645)
-.... .+... ++| .++++-...+.|+.++.......+.+.. .-.....++++|+
T Consensus 331 ~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 331 MHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp BSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred eCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence 01222 44443 334 4555555567888888543333333320 0125789999995
Q ss_pred -CCEEEEEeCCccEEEEeCC
Q 006424 473 -GKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 473 -~~~l~t~s~dg~I~iwd~~ 491 (645)
+.++++-..+.+|+.++++
T Consensus 410 ~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEccC
Confidence 5555555567788887754
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.00046 Score=68.76 Aligned_cols=182 Identities=11% Similarity=0.028 Sum_probs=115.5
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--------------------CCCcEEEEEEeeCCCCEEEEE
Q 006424 288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------------------~~~~v~~l~~~p~~~~~l~s~ 346 (645)
....+++|++++ .++++..++.|..||..+++...... ....+.++++.+ +...|+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 345678888887 58888899999999987654432110 012478899986 44556666
Q ss_pred eCCCcEEEEeCCCCcEEEeec-----cCCCeEEEEEcc-CCCEEEEEec-----------------CCeEEEEEecCCce
Q 006424 347 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL 403 (645)
Q Consensus 347 s~dg~i~vwd~~~~~~~~~~~-----~~~~v~~l~~sp-~g~~l~~g~~-----------------dg~i~iwd~~~~~~ 403 (645)
...+.|..+|..++....+.. .......+++.+ +|+..++-.. +|.|..||..+...
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 656668999987665433321 123478899999 8976555322 36788888765543
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
......+ .....++++|+|..++++-+..+.|.+|+... ....+.. ..+ ...++++++|++.++.
T Consensus 178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence 2211111 23467999999833444546678999999763 1222222 223 7889999999877665
Q ss_pred eC
Q 006424 480 GD 481 (645)
Q Consensus 480 s~ 481 (645)
..
T Consensus 247 ~~ 248 (322)
T 2fp8_A 247 SE 248 (322)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 261
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=4.2e-05 Score=84.52 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=121.1
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc------------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
++.++.++.++.|..+|..+|+.+-.+..... -..+.+ .+..+++++.|+.|..+|..+++.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 56888888899999999999999887753211 012233 345788888899999999999987653
Q ss_pred eccCC--CeEEEEEcc--CCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccc--------------------
Q 006424 366 ADVRD--VISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK-------------------- 415 (645)
Q Consensus 366 ~~~~~--~v~~l~~sp--~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~-------------------- 415 (645)
..... ....+..+| .+..++++.. +|.|..+|..+++.............
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 32211 000011111 2345666543 58999999998876443211111000
Q ss_pred ----cCCCCeEEEEEcCCCCcEEEEEECCC-------------------eEEEEECCcceeeEeecC--CC-------CC
Q 006424 416 ----TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKGLP--KS-------GS 463 (645)
Q Consensus 416 ----~~~~~i~~i~~s~~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~~--~~-------~~ 463 (645)
........+++.|++ .+++.++.++ .|.-+|..+......... |. .+
T Consensus 223 w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 011122346788875 5777877765 388899776544443321 21 23
Q ss_pred eEEEEEecCCC---EEEEEeCCccEEEEeCCCCCcC
Q 006424 464 QMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP 496 (645)
Q Consensus 464 i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~~ 496 (645)
.....+..+|+ .++.++.+|.++++|..+++..
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 33334445775 6889999999999999998754
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.18 E-value=0.0016 Score=66.52 Aligned_cols=199 Identities=6% Similarity=-0.073 Sum_probs=126.5
Q ss_pred ccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424 287 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 363 (645)
Q Consensus 287 ~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 363 (645)
......++|++. +.|+ +-...+.|..+++..+.....+. .......+++.+..++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 345788999964 5544 55567889999988665444333 22345678888744555566566778999998765544
Q ss_pred Eee-ccCCCeEEEEEccCCCEEEEEec-C-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 364 DWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 364 ~~~-~~~~~v~~l~~sp~g~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.+. ..-.....++++|.+..|+.... . +.|..+++.+...... . ... ......++++|++..++++-+..
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~-~~~-----~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-A-DTH-----LFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E-CSS-----CSCEEEEEEEGGGTEEEEEETTT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-E-ECC-----CCCeeeEEEeCCCCEEEEEECCC
Confidence 333 33356889999997776666553 3 6788888775433211 1 111 24578999998764666666667
Q ss_pred CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 441 g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+.|..+|..................++++ ..+.++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 89999997632222222223446678888 34555666666788888885555
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.17 E-value=0.0025 Score=64.14 Aligned_cols=198 Identities=6% Similarity=-0.066 Sum_probs=125.6
Q ss_pred cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424 288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364 (645)
Q Consensus 288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 364 (645)
..+..++|++. +.|+ +-...+.|..+++..+....... .......+++.+..++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 45788999864 5554 44567889999987655433332 223467888887445555665667889999988765444
Q ss_pred ee-ccCCCeEEEEEccCCCEEEEEec-C-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424 365 WA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441 (645)
Q Consensus 365 ~~-~~~~~v~~l~~sp~g~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg 441 (645)
+. ..-.....++++|.+..|+.... . +.|..+++.+...... ... .......++++|++..++++-+..+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~----~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADT----HLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES---CCS----SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE---EEC----CCCCcceEEEeCCCCEEEEEECCCC
Confidence 33 33456789999997666665543 3 6788888775433211 111 1245789999987645666666678
Q ss_pred eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 442 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 442 ~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.|..+|..................++++. .+...++-...+.|..++..++
T Consensus 226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 99999976322222122234466788883 4555555556788888885554
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.14 E-value=0.0055 Score=60.69 Aligned_cols=199 Identities=12% Similarity=-0.026 Sum_probs=124.8
Q ss_pred ccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCC----CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 287 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 287 ~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~----~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
......++|++. +.|+ +-..++.|..+++.. ......+. .-.....+++.+.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 345778999875 4544 555568999999875 22222222 2235678888873455555556678999999987
Q ss_pred CcEEEeec-cCCCeEEEEEccCCCEEEEEecC--CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 360 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 360 ~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
.....+.. .......++++|.+..|+.+... +.|..+++.+..... + ... .......+++++++..++++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~-~~~----~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VTE----NIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--E-ECS----SCSCEEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--E-EEC----CCCCceEEEEeccCCEEEEE
Confidence 65544332 34567899999977766665543 678888876543321 1 111 12457899999886455566
Q ss_pred EECCCeEEEEECCc-ceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 437 TSEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 437 ~s~dg~I~iwd~~~-~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
-+..+.|..+|... ....+.. ........++++. .+.++++-...+.|..++..++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 66678999999763 2223322 1123456788885 3555566666788999987655
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.12 E-value=8.6e-05 Score=82.06 Aligned_cols=197 Identities=11% Similarity=0.075 Sum_probs=122.2
Q ss_pred CCeEEEEeC------CCcEEEEecCCCeEEEEecCC--C------------------------------cEEEEEEeeCC
Q 006424 298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID 339 (645)
Q Consensus 298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~--~------------------------------~v~~l~~~p~~ 339 (645)
++.++.+.. +|.|..+|..+|+.+..+... . ....++++| +
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~ 240 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-E 240 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-C
Confidence 455555543 589999999999988776421 0 012367888 7
Q ss_pred CCEEEEEeCCC-------------------cEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---EEEEE
Q 006424 340 DNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG 387 (645)
Q Consensus 340 ~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~l~~g 387 (645)
.++++.++.++ .|..+|.++++.+-... |. .+.....+..+|+ .++++
T Consensus 241 ~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~ 320 (668)
T 1kv9_A 241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA 320 (668)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE
Confidence 77888887765 39999999998765332 21 2233333344675 68889
Q ss_pred ecCCeEEEEEecCCceeeeEEeeccc-----cc-cCC------------------------CCeEEEEEcCCCCcEEEEE
Q 006424 388 SITGTCHFYKASGNDLKLEKVDFHDR-----KK-TSG------------------------NKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 388 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~-~~~------------------------~~i~~i~~s~~g~~~l~~~ 437 (645)
+.+|.++++|..+++.... ..+... .. ... ..-..++++|+. .++++.
T Consensus 321 ~~~G~l~~lD~~tG~~l~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~ 398 (668)
T 1kv9_A 321 PKNGFFYVLDRTNGKLISA-EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIP 398 (668)
T ss_dssp CTTSEEEEEETTTCCEEEE-EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred CCCCEEEEEECCCCCEecc-ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEe
Confidence 9999999999988876421 111000 00 000 001125677765 344331
Q ss_pred ------------------------------------ECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424 438 ------------------------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 481 (645)
Q Consensus 438 ------------------------------------s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~ 481 (645)
..+|.|..||..+.....+... ..+.....+...+.+++.++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~ 477 (668)
T 1kv9_A 399 YQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTA 477 (668)
T ss_dssp EEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECT
T ss_pred ccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECC
Confidence 1247899999876655444321 222333345567889999999
Q ss_pred CccEEEEeCCCCCcCCC
Q 006424 482 DCRVYVWNYDELCFPSS 498 (645)
Q Consensus 482 dg~I~iwd~~~~~~~~~ 498 (645)
||.++.||..+++....
T Consensus 478 dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 478 AGQMHAYSADKGEALWQ 494 (668)
T ss_dssp TSEEEEEETTTCCEEEE
T ss_pred cccchhhhhhcChhheE
Confidence 99999999999875443
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.10 E-value=0.0015 Score=67.79 Aligned_cols=243 Identities=10% Similarity=0.063 Sum_probs=138.2
Q ss_pred cEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 202 CIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 202 ~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
.-..++|+|+ +..|..+...+.|+.+|..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------------------------------------------- 173 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------------------------------------------- 173 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE----------------------------------------------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE----------------------------------------------
Confidence 4568899984 3344444444788888876532
Q ss_pred ceeeccCccCeEEEEEcCCCeEEEEeCCC-----cEEEEecCCCeE-EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDK-----TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg-----~I~iwd~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~ 353 (645)
+..+.+.......+++++++.|+.+...+ .+...+...+.. ...+........++++|.+++++++-..++.|+
T Consensus 174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 22222334567899999987555554422 233333321111 011222234566788884555555555678899
Q ss_pred EEeCCCCcE-EEee--ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCC--cee-eeEEeec-cc--------cccC
Q 006424 354 IWGVCEKRV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN--DLK-LEKVDFH-DR--------KKTS 417 (645)
Q Consensus 354 vwd~~~~~~-~~~~--~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~--~~~-~~~~~~~-~~--------~~~~ 417 (645)
.+|..++.. ..+. ........++|+|+|+.|+++. ..+.|..++.... ... ...+.-. +. ....
T Consensus 254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 999987765 2222 2222345799999999666665 4578888887532 111 0111100 00 0001
Q ss_pred CCCeEEEEE---------cCCCCcEEEEEECCCeEEEEECCcceeeEeecCC----------------CCCeEEEEEe-c
Q 006424 418 GNKITGIQF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-T 471 (645)
Q Consensus 418 ~~~i~~i~~---------s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----------------~~~i~~v~~s-p 471 (645)
-.....+++ .++| .++++-...+.|+.++.......+.+... -.....++++ +
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 134567888 6665 56666666789999985433333333211 1246789999 5
Q ss_pred CCCEEEEEeCCccEEEEeCC
Q 006424 472 TGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 472 ~~~~l~t~s~dg~I~iwd~~ 491 (645)
+|.++++=..+++|+..+++
T Consensus 413 ~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 413 RKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEecC
Confidence 66666665667788887764
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.03 E-value=0.00064 Score=76.26 Aligned_cols=240 Identities=8% Similarity=0.028 Sum_probs=130.0
Q ss_pred cccC-cEEEEEEC-CCCCEEEEEeC-CC----cEEEEEcCCC-ceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424 198 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 269 (645)
Q Consensus 198 ~H~~-~V~~l~fs-pdg~~L~sgs~-Dg----~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (645)
+|.- .+...+|| |||++||-+.. +| .|+++|+.++ ...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------------- 215 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------------- 215 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence 3443 68899999 99998885543 33 4999999874 210
Q ss_pred CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCC-----CcEEEEecCCCeE--EEEe--cCCCcEEEEEEeeCC
Q 006424 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPID 339 (645)
Q Consensus 270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d-----g~I~iwd~~~~~~--~~~~--~~~~~v~~l~~~p~~ 339 (645)
. ..+. .....++|+||+ .|+....| ..|..+++.+++. ...+ ........+.|+| +
T Consensus 216 -------~---~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D 281 (751)
T 2xe4_A 216 -------A---DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D 281 (751)
T ss_dssp -------C---CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred -------C---cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence 0 0011 113467899997 66655554 3688888877642 2233 2334567889999 9
Q ss_pred CCEEEEEeC---CCcEEEEeCCCC--cE--EEeec-cCCCeEEEEEccCCCEEEEEe-cC--C--eEEEEEecCCceeee
Q 006424 340 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGS-IT--G--TCHFYKASGNDLKLE 406 (645)
Q Consensus 340 ~~~l~s~s~---dg~i~vwd~~~~--~~--~~~~~-~~~~v~~l~~sp~g~~l~~g~-~d--g--~i~iwd~~~~~~~~~ 406 (645)
+++|+..+. ...|+++|+.++ .. ..+.. ......++.|+. |+.|+..+ .+ + .|..+++.+... ..
T Consensus 282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~ 359 (751)
T 2xe4_A 282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WS 359 (751)
T ss_dssp SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence 988776653 346888998875 33 33332 334455555543 55554443 33 2 566666553211 11
Q ss_pred E-EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe--EEEEEC-------Ccc--eeeEeecCCCCCeEEEEE----e
Q 006424 407 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T 470 (645)
Q Consensus 407 ~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~--I~iwd~-------~~~--~~~~~~~~~~~~i~~v~~----s 470 (645)
. +..+.. ...+..+.+. +..++++...++. |.++++ ... ...+... ....+..+.+ +
T Consensus 360 ~~li~~~~----~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~ 432 (751)
T 2xe4_A 360 HVLVDHSE----DVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLE 432 (751)
T ss_dssp CEEECCCS----SEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCC
T ss_pred eeEECCCC----CcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccC
Confidence 1 111110 1234555555 3367777777875 445564 211 2222211 1122333332 3
Q ss_pred cCCC-EEEEEeCC---ccEEEEeCCCCC
Q 006424 471 TTGK-HIISIGDD---CRVYVWNYDELC 494 (645)
Q Consensus 471 p~~~-~l~t~s~d---g~I~iwd~~~~~ 494 (645)
+++. ++++.+.. +.++.+|+.+++
T Consensus 433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 433 YEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4554 44444432 568888887654
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.02 E-value=0.0039 Score=62.74 Aligned_cols=197 Identities=10% Similarity=-0.031 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 367 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~- 367 (645)
..+|.+..++..|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.+.....+..
T Consensus 35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34455555555554443 3568888887665555555555688999998344444554567889999998766544332
Q ss_pred cCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEE
Q 006424 368 VRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI 445 (645)
Q Consensus 368 ~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~i 445 (645)
.......+++.+.+..|+.+ ...+.|.+.++.+..... + ... .......+++.|.+..++++-... +.|..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-ECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-EeC----CCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 23456789999865555444 456789999987654321 1 111 124568999999764555555555 78998
Q ss_pred EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 446 wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
++.............-.....++++|++..|+.+. ..+.|..+|++..
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88663322222222344678999998777666654 4678999998754
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.95 E-value=0.00075 Score=75.71 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=110.4
Q ss_pred cCcc-CeEEEEEc-CCC-eEE-EEeCCC----cEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-----C
Q 006424 285 GHKG-DVLDLAWS-NSN-YLL-SCSMDK----TVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----G 350 (645)
Q Consensus 285 ~h~~-~V~~l~~s-~~~-~l~-s~s~dg----~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-----g 350 (645)
+|.. .+...+|| ||| +|+ +.+.+| +|+++|+.++ +.+.. ........+.|+| +++.|+....| .
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLREN 247 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCC
Confidence 3443 67889999 998 555 333333 4999999988 63211 0111234678999 88877776655 2
Q ss_pred cEEEEeCCCCc---EEEee-ccCCCeEEEEEccCCCEEEEEec---CCeEEEEEecCCceee--eEEeeccccccCCCCe
Q 006424 351 KVRIWGVCEKR---VVDWA-DVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKI 421 (645)
Q Consensus 351 ~i~vwd~~~~~---~~~~~-~~~~~v~~l~~sp~g~~l~~g~~---dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~i 421 (645)
.|+++++.++. ...+. ........+.|+|||++|+.... ...|.++|+.+..... ..+ ... .....
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~----~~~~~ 322 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPR----EKGVR 322 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCC----CTTCC
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecC----CCCce
Confidence 58888887753 22222 23345678899999999887663 3467788887642111 111 111 12344
Q ss_pred EEEEEcCCCCcEEEEEECC----CeEEEEECCcc--eee-EeecCCCCCeEEEEEecCCCEEEEEeCCcc--EEEEeC
Q 006424 422 TGIQFSRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY 490 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~d----g~I~iwd~~~~--~~~-~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~--I~iwd~ 490 (645)
.++.|+.+ ..+++.+..+ ..|..+|.... ... +........+..+.+. .+.++++...+|. |+++++
T Consensus 323 ~s~~~~~g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGT-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETT-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeC-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55555444 3555555554 36777776532 122 2221111234455553 2344556666775 455564
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.93 E-value=0.0043 Score=61.48 Aligned_cols=179 Identities=8% Similarity=-0.069 Sum_probs=113.5
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----CcEEEee-ccCCCeEEEEEccCCC
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK 382 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~----~~~~~~~-~~~~~v~~l~~sp~g~ 382 (645)
..|+..|+.+.+..........+.+++|++.++.++++-..++.|..+++.+ .....+. ..-.....+++++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 5688889887766666655567889999983344445555568899999876 2222222 2224568899987665
Q ss_pred EEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeecCC
Q 006424 383 GFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK 460 (645)
Q Consensus 383 ~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~ 460 (645)
.|+.+ ...+.|.++++.+..... ... .. ......+++.|.+..++++.... +.|...+.............
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~~-----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEE-EEE-CT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred eEEEEECCCCEEEEEeCCCCceEE-EEE-CC-----CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 55544 567899999987654321 111 11 24678999998763444444333 78888886532222222223
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 461 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 461 ~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
-.....++++|++..|+.+. ..+.|..+|++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 45678999999877776655 5679999999754
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.92 E-value=0.0047 Score=63.11 Aligned_cols=195 Identities=10% Similarity=-0.027 Sum_probs=123.9
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cC
Q 006424 291 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR 369 (645)
Q Consensus 291 ~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~ 369 (645)
.|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+.....+.. ..
T Consensus 80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 344444445554443 3678888988766555555556688999998344455555567889999998876554432 23
Q ss_pred CCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEE
Q 006424 370 DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD 447 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd 447 (645)
.....+++++.+..|+.. ...+.|.+.++.+..... + ... .......+++.|.+..++++-... +.|..++
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l-~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--E-ECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--e-ecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 356778898866555544 456788888876544221 1 111 124578999998764555555555 7898888
Q ss_pred CCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 448 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 448 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
.............-.....++|+|++..|+.+. ..+.|..+|++..
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 764332222222345678999998777666554 5678999998754
No 272
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0059 Score=63.70 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=119.3
Q ss_pred cCeEEEEE-------cCCC-eEEEEeCCC-------cEEEEecCC-CeEE-----EEecCCCcEEEEEEeeCCCCEEEEE
Q 006424 288 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG 346 (645)
Q Consensus 288 ~~V~~l~~-------s~~~-~l~s~s~dg-------~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~~p~~~~~l~s~ 346 (645)
.....++| ++++ .|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35788999 8887 566666554 255665333 2221 1221112345678898555566666
Q ss_pred eCCCcEEEEeCC-------CCcE--------------EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCcee
Q 006424 347 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK 404 (645)
Q Consensus 347 s~dg~i~vwd~~-------~~~~--------------~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~ 404 (645)
..++.|..+|+. ++.. +.........+.++|+|+|+.|+++. ....|+.++.......
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 677889999987 4443 11222345578999999999766664 5678888776543211
Q ss_pred e---eEEeec-ccc--------ccCCCCeE-EEEEc-------CCCCcEEEEEECCCeEEEEECCcceeeEeecCC----
Q 006424 405 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK---- 460 (645)
Q Consensus 405 ~---~~~~~~-~~~--------~~~~~~i~-~i~~s-------~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~---- 460 (645)
. ..+.-. +.. ...-.... .+... ++| .++++=...++|+.++......++.+...
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~ 424 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL 424 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence 1 111110 100 00112233 44443 344 56666667789999985544445544211
Q ss_pred ------------------CCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCC
Q 006424 461 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 461 ------------------~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~ 493 (645)
-.....++++++ +.++++=+.+.+|+.++++..
T Consensus 425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 124678999997 666666667789999998765
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.92 E-value=0.0016 Score=70.34 Aligned_cols=198 Identities=9% Similarity=0.008 Sum_probs=116.0
Q ss_pred CCeEEEEe------CCCcEEEEecCCCeEEEEecCCCcE---------------------------------------EE
Q 006424 298 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 332 (645)
Q Consensus 298 ~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~v---------------------------------------~~ 332 (645)
++.++.++ .++.|+.+|.++|+.+-.+...... ..
T Consensus 166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~ 245 (599)
T 1w6s_A 166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW 245 (599)
T ss_dssp TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence 45566555 3799999999999988776422211 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEeec---cCC-------CeEEEEEc-cCC---C
Q 006424 333 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDG---K 382 (645)
Q Consensus 333 l~~~p~~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~~---~~~-------~v~~l~~s-p~g---~ 382 (645)
+++.+ ..++++.+..+ +.|..+|.++++.+-... |.. ...-+... .+| .
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 45666 66777777655 379999999998764322 211 11112222 467 4
Q ss_pred EEEEEecCCeEEEEEecCCceeeeEEeecccc------c-cCCC--------------------------CeEEEEEcCC
Q 006424 383 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGN--------------------------KITGIQFSRD 429 (645)
Q Consensus 383 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~--------------------------~i~~i~~s~~ 429 (645)
.++.++.+|.++++|..+++..... .+.... . .... .-..++++|+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSAN-KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEECCCcEEEEEECCCCCEeecc-cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 6777889999999999887764331 111000 0 0000 0123556666
Q ss_pred CCcEEEEEE---------------------------------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEe
Q 006424 430 ESQRIMITS---------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 470 (645)
Q Consensus 430 g~~~l~~~s---------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~s 470 (645)
. .++++.. .+|.|.-||..+.....+... ..+..+-...
T Consensus 404 ~-~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~ 481 (599)
T 1w6s_A 404 R-ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMA 481 (599)
T ss_dssp T-TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEE
T ss_pred C-CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceE
Confidence 4 3443321 346778888765444333311 1111111123
Q ss_pred cCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 471 TTGKHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 471 p~~~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
..+.+++.++.||.++.||.++++..+..
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 35778888999999999999999765544
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.90 E-value=0.019 Score=58.91 Aligned_cols=201 Identities=11% Similarity=-0.031 Sum_probs=126.5
Q ss_pred CccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCC----eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 286 HKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 286 h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~----~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
....+..++|++. +.|+ +-...+.|+.+++... ....... .......+++.+..++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 4456889999974 5555 4455688988988652 2222332 344678889987455555665667889999998
Q ss_pred CCcEEEeec-cCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 359 EKRVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 359 ~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
+.....+.. .-.....++++|.+..|+.... .+.|...++.+...... ... .-.....+++++++..+++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~---~~~----~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTE----NIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE---ECS----SCSCEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE---EEC----CCCceEEEEEEeCCCEEEE
Confidence 776554433 4456889999997777766653 36788888876543221 111 1246789999987645555
Q ss_pred EEECCCeEEEEECCcc-eeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 436 ITSEDSKLRILDGVDV-IHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~-~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+-+..+.|..+|.... ...+. .........++++. .+.++++-...+.|..+|..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 5566789999997632 22222 21223455677773 34455565667889999866653
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.89 E-value=0.011 Score=58.55 Aligned_cols=198 Identities=7% Similarity=-0.055 Sum_probs=126.2
Q ss_pred cCeEEEEEcCC-CeE-EEEeCCCcEEEEecCCCeEE-EEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424 288 GDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 363 (645)
Q Consensus 288 ~~V~~l~~s~~-~~l-~s~s~dg~I~iwd~~~~~~~-~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 363 (645)
....+++|++. +.| .+-...+.|..+++..+... ..+ ..-.....+++.+..++++++-...+.|.++++.+....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678899874 544 45556788999998765321 111 222346778888745555566566788999998875544
Q ss_pred Eee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 364 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 364 ~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.+. ........++++|.+..|+.+.. .+.|..+++.+..... +.... -.....+++++++..++++-+..
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSE-----IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEECC-----CCCccEEEEeccCCEEEEEECCC
Confidence 332 44456789999997767766653 5788888877543221 11111 24568999999764566666667
Q ss_pred CeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 441 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 441 g~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+.|..+|... ....+. ........++++.. +..+.+-...+.|..++..++.
T Consensus 188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 8999999763 222222 22345667888753 4455555567899999987664
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.80 E-value=0.035 Score=55.11 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=103.1
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 362 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 362 (645)
...+.++.|.+ +.++.++.++.|.. ..+.|+.-.... +...+..+.+.+ ++..++++ .++.|..- ...++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence 34678888876 44444555665443 223343322221 334577888776 56555554 46654332 222322
Q ss_pred E-E-eeccCCCeEEEEEccCCCEEEEEecCCeEEE-EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 363 V-D-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 363 ~-~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
- . .......+..+.+.+++.+++++. +|.+.. .|-...... ..... ....+..+.+.+++ . ++.++.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~--~~~~~-----~~~~~~~~~~~~~g-~-~~~~~~ 223 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWE--PHNRT-----TSRRLHNMGFTPDG-R-LWMIVN 223 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCE--EEECC-----SSSCEEEEEECTTS-C-EEEEET
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCcee--ECCCC-----CCCccceeEECCCC-C-EEEEeC
Confidence 2 1 223455788999999988877665 444433 332122221 11111 13568889999986 4 445667
Q ss_pred CCeEEEEECC--cceeeEeec--CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 440 DSKLRILDGV--DVIHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 440 dg~I~iwd~~--~~~~~~~~~--~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+|.+++.+.. ..-...... .....+..+.+.+++..++++. +|.| .+..+.+
T Consensus 224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 8888877421 111111111 1234588999998887777654 6766 4555555
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.80 E-value=0.0056 Score=66.17 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=84.1
Q ss_pred CcEEEEeCCCCcEEEeec---cCC-------CeEEEEEc-cCCC---EEEEEecCCeEEEEEecCCceeeeEEeecccc-
Q 006424 350 GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK- 414 (645)
Q Consensus 350 g~i~vwd~~~~~~~~~~~---~~~-------~v~~l~~s-p~g~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~- 414 (645)
+.|..+|..+++.+-... |.. ...-+... .+|+ .++.++.+|.++++|..+++.... ..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCcc
Confidence 579999999998775332 211 11112221 4674 788899999999999988775432 1111100
Q ss_pred ------------------c---------cCCC-----------CeEEEEEcCCCCcEEEEEE------------------
Q 006424 415 ------------------K---------TSGN-----------KITGIQFSRDESQRIMITS------------------ 438 (645)
Q Consensus 415 ------------------~---------~~~~-----------~i~~i~~s~~g~~~l~~~s------------------ 438 (645)
. .... .-..++++|+. .++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDT-GLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTT-CCEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCC-CEEEEechhcceeeecccccccCCC
Confidence 0 0000 01134666664 2333322
Q ss_pred ---------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424 439 ---------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 499 (645)
Q Consensus 439 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~ 499 (645)
.+|.|.-||..+.....+.... .++..-.....+.+++.++.||.++.||.++++.....
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 2578888997755444333211 12222122235778888999999999999999765544
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.78 E-value=0.015 Score=55.01 Aligned_cols=203 Identities=11% Similarity=0.120 Sum_probs=123.0
Q ss_pred cccccccCcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424 194 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 272 (645)
Q Consensus 194 ~~l~~H~~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (645)
+.+.+-.+.+..++|+|++..|+ +...++.|...|.. +..
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------------------------------- 60 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------------------------------- 60 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence 44666667899999999876554 56677888888876 322
Q ss_pred eeccCCCceeec-cCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeE---EEEe-------cCCCcEEEEEEeeCCC
Q 006424 273 FQIEESPLQELH-GHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVF-------DHHNYVTCVQFNPIDD 340 (645)
Q Consensus 273 ~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~---~~~~-------~~~~~v~~l~~~p~~~ 340 (645)
++.+. +-....-.+++.+++.+ ++.-.++.+.++++..... +... ..+.....++|+| .+
T Consensus 61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~ 132 (255)
T 3qqz_A 61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD 132 (255)
T ss_dssp -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence 12221 11245667788777744 5555677888888764432 2222 1334568999999 67
Q ss_pred CEEEEEeCCCcEEEEeCCC----CcEEEee-------ccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEE
Q 006424 341 NYFISGSIDGKVRIWGVCE----KRVVDWA-------DVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKV 408 (645)
Q Consensus 341 ~~l~s~s~dg~i~vwd~~~----~~~~~~~-------~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~ 408 (645)
+.|+++.......+|.+.. ....... .....+.+++++|... +++.......+..+|.... .....
T Consensus 133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~ 210 (255)
T 3qqz_A 133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM 210 (255)
T ss_dssp TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence 6666666655555555431 1111110 1234578999999654 5555666778888887765 23333
Q ss_pred eeccccc---cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 409 DFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 409 ~~~~~~~---~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
.+..... ..-...-.|+|.++| + |+..++.+.++.+.
T Consensus 211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT 250 (255)
T ss_dssp ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence 3332110 011356789999998 4 55558888777775
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0014 Score=68.06 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=102.1
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-C----eEEEEEecCCce
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL 403 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g----~i~iwd~~~~~~ 403 (645)
....++++|.++..|+++...+.|+.+|+.++.+..+.........++|+++|+.|+++... + .+..++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 45788998721344555555588999999988877766666778999999999977776642 1 344444333221
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEE-eC
Q 006424 404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISI-GD 481 (645)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~-s~ 481 (645)
....+. . ......++++|++..++++-..++.|..++...... .+...........++|+|+|++|+.+ ..
T Consensus 218 ~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 218 VITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp SEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 111111 1 134567889994336666666788999999764433 22222233457899999999955544 56
Q ss_pred CccEEEEeCCC
Q 006424 482 DCRVYVWNYDE 492 (645)
Q Consensus 482 dg~I~iwd~~~ 492 (645)
.++|+.++++.
T Consensus 291 ~~~I~~~~~d~ 301 (430)
T 3tc9_A 291 QHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEeCCc
Confidence 78999988764
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.74 E-value=0.013 Score=57.28 Aligned_cols=204 Identities=8% Similarity=0.092 Sum_probs=126.8
Q ss_pred cCccCeEEEEEcCC-CeEEEEe-CCCcEEEEecCCCeEEEE-ecC-------CCcEEEEEE---eeCCCCEEEEEeC---
Q 006424 285 GHKGDVLDLAWSNS-NYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI--- 348 (645)
Q Consensus 285 ~h~~~V~~l~~s~~-~~l~s~s-~dg~I~iwd~~~~~~~~~-~~~-------~~~v~~l~~---~p~~~~~l~s~s~--- 348 (645)
.....--++.|++. +.++.++ ..++|..||...+..... +.. ...+..+.| .| ++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 33444456789864 5666555 789999999986644333 322 114689999 68 6767765442
Q ss_pred ----------CCcEEEEeCC---CCcEEEeec--------------cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecC
Q 006424 349 ----------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG 400 (645)
Q Consensus 349 ----------dg~i~vwd~~---~~~~~~~~~--------------~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~ 400 (645)
+..|..||+. +++.+.... .......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999999 665543222 11247899999999999988888 8877777765
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeec--C---CCCCeEEE-EEecCC
Q 006424 401 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGL--P---KSGSQMSA-SFTTTG 473 (645)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~--~---~~~~i~~v-~~sp~~ 473 (645)
..... +.............+.|+++|+| ..|++....+.+..+|+..... .+... . .-.....+ ..-.+|
T Consensus 169 ~~~~~--~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 169 KTVST--FAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp CCEEE--EEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CEEee--eeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 53322 21111111123457799999998 5666665599999999875433 12111 1 11223443 333477
Q ss_pred CE-EEEEeCCccEEEEeCCC
Q 006424 474 KH-IISIGDDCRVYVWNYDE 492 (645)
Q Consensus 474 ~~-l~t~s~dg~I~iwd~~~ 492 (645)
+. |++.+..+.+.+.+-+.
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 77 55555667666666544
No 281
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.74 E-value=0.0065 Score=65.54 Aligned_cols=149 Identities=9% Similarity=-0.030 Sum_probs=90.0
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEE-EEEeeCCCCEEEEEeC------CCcEEEEeCCCCcEEEe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~-l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~ 365 (645)
++.++.++.|+.+..+|..+|+.+-.+.... .+.+ .... + ..+++++. ++.|+.+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4688888999999999999999887764222 2221 1121 3 45555554 78999999999887643
Q ss_pred eccCCCe---------------------------------------EEEEEccCCCEEEEEecC----------------
Q 006424 366 ADVRDVI---------------------------------------SAICYIPDGKGFIVGSIT---------------- 390 (645)
Q Consensus 366 ~~~~~~v---------------------------------------~~l~~sp~g~~l~~g~~d---------------- 390 (645)
....... ..+++.++...++.++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 2221110 235667776777777642
Q ss_pred CeEEEEEecCCceeeeEEeecccc----ccCCCCeEEEEEcCCCC--cEEEEEECCCeEEEEECCcc
Q 006424 391 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 391 g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~s~~g~--~~l~~~s~dg~I~iwd~~~~ 451 (645)
+.|..+|..+++..-. .....+. .....++. +....+|. ..++.++.+|.++++|..+.
T Consensus 272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC
Confidence 3588999988775432 2221110 01112222 22224552 25677888999999997644
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.72 E-value=0.025 Score=57.87 Aligned_cols=187 Identities=9% Similarity=-0.045 Sum_probs=118.4
Q ss_pred CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----cEEEe-eccCCCeE
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDW-ADVRDVIS 373 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~----~~~~~-~~~~~~v~ 373 (645)
.+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+. ....+ ........
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3444444 368888998877665556666778999999834444444445678999998762 22232 22445678
Q ss_pred EEEEccCCCEEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcc
Q 006424 374 AICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV 451 (645)
Q Consensus 374 ~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~ 451 (645)
.+++.+.+..|+. -...+.|.+.++.+...... +. .. ......+++.|.+..++.+-.. .+.|...++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~~-----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-CS-----SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-CC-----CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 8999985555554 45577899888876543222 11 11 2457899999975344444323 378888887633
Q ss_pred eeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 452 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
.........-.....+++++++..|+.+. ..+.|..+|++..
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 22222222345789999999887777664 4678999998764
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.71 E-value=0.0023 Score=66.41 Aligned_cols=155 Identities=9% Similarity=0.012 Sum_probs=96.4
Q ss_pred CeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---C-cEEEEeCCCCc
Q 006424 289 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEKR 361 (645)
Q Consensus 289 ~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g-~i~vwd~~~~~ 361 (645)
....++|+++ +.|+.+...+.|+.+|..++..............+++++ +++++++.... . .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568899984 677777666899999998888776666556789999999 88844443311 1 23333332221
Q ss_pred E-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 362 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 362 ~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
. ............++++| +|.+.++-..++.|+.+|..+............ ...-..++|+|+|..++++-..
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEETT
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeCC
Confidence 1 01111234456788999 666555555677899998875544122111111 1223479999998435555566
Q ss_pred CCeEEEEECC
Q 006424 440 DSKLRILDGV 449 (645)
Q Consensus 440 dg~I~iwd~~ 449 (645)
.+.|+.++..
T Consensus 294 ~~~I~~~~~d 303 (433)
T 4hw6_A 294 KHCIYRVDYN 303 (433)
T ss_dssp TTEEEEEEBC
T ss_pred CCEEEEEeCC
Confidence 7899998854
No 284
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.61 E-value=0.058 Score=52.20 Aligned_cols=238 Identities=12% Similarity=0.152 Sum_probs=147.2
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeecc
Q 006424 206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 285 (645)
Q Consensus 206 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (645)
.-.+|..+.+|-=. ..++.|+|+++. ..+..+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK---------------------------------------------~klks~~- 104 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHT- 104 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEE-
T ss_pred eeeCCCccEEEEec-CCeEEEechHHh---------------------------------------------hhhccee-
Confidence 34477777666654 567999999872 2233332
Q ss_pred CccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeC-------CCcE
Q 006424 286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKV 352 (645)
Q Consensus 286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~-------dg~i 352 (645)
....|..-.|-.+..|+-.+. ..|+-|+++. ..+++.|. ....|.....++ +.+.++..+- .|.+
T Consensus 105 ~~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 105 MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp CSSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEE
T ss_pred cCCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeE
Confidence 246787888877665554443 5799999974 45666664 234566777777 6666554432 3678
Q ss_pred EEEeCCCCcEEEeeccCCCeEEEEEccC---CCEEEEEec---CCeEEEEEecCC-----ceeeeEEeeccccccCCCCe
Q 006424 353 RIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKI 421 (645)
Q Consensus 353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~g~~---dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i 421 (645)
.+|..+.+....+.+|......+.+..+ .+.++.+.. .+.+++.++... ....+.....-......+-.
T Consensus 183 QLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP 262 (365)
T 2xzh_A 183 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 262 (365)
T ss_dssp EEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE
T ss_pred EEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce
Confidence 9999988887777777655444333211 123444433 268999998543 11112222222222334566
Q ss_pred EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.++..++.- ..++.-+.-|.|++||+.+....+...-....|...+-+....=++.....|.|.--.++..
T Consensus 263 Vamqvs~ky-gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 263 VAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecccC-CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 788888875 68999999999999999988888877656666655555444444444445665555555443
No 285
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.58 E-value=0.018 Score=62.24 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=89.0
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEE-EEEeeCCCCEEEEEe------CCCcEEEEeCCCCcEEEeecc
Q 006424 301 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV 368 (645)
Q Consensus 301 l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~-l~~~p~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~ 368 (645)
++.++.|+.|..+|..+|+.+-...... .+.+ ..+. ++ .+++++ .++.|+.+|.++++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8889999999999999999887664221 2221 1121 34 455554 379999999999887643222
Q ss_pred CCCe---------------------------------------EEEEEccCCCEEEEEecCC----------------eE
Q 006424 369 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC 393 (645)
Q Consensus 369 ~~~v---------------------------------------~~l~~sp~g~~l~~g~~dg----------------~i 393 (645)
.... ..+++.++...++.++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1111 1356667777888887653 78
Q ss_pred EEEEecCCceeeeEEeeccccc----cCCCCeEEEEEc-CCCC--cEEEEEECCCeEEEEECCcc
Q 006424 394 HFYKASGNDLKLEKVDFHDRKK----TSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~s-~~g~--~~l~~~s~dg~I~iwd~~~~ 451 (645)
.-+|..+++..-. .....+.. ....++. +... .+|. ..++.++.+|.++++|..+.
T Consensus 281 ~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 281 FGRDADTGEAKFG-YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp EEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEeCCCCceeeE-eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence 8999988876432 22211100 0111222 2222 3442 35777889999999997643
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.56 E-value=0.035 Score=54.73 Aligned_cols=183 Identities=11% Similarity=0.193 Sum_probs=117.3
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC----CC---EEEEEe-C--CCcEEEEeC--CCCcEEEeec
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID----DN---YFISGS-I--DGKVRIWGV--CEKRVVDWAD 367 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~----~~---~l~s~s-~--dg~i~vwd~--~~~~~~~~~~ 367 (645)
.++.....+-+.+||+ +|+.+..+.. +.++.+..-| + ++ ++++.. . +++|.+|++ .++.+.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 6777777889999999 7888888754 5677777766 2 11 223333 3 578999966 4555444421
Q ss_pred ------cC-CCeEEEEE--ccC-CC-EEEEEecCCeEEEEEecC---CceeeeEEe-eccccccCCCCeEEEEEcCCCCc
Q 006424 368 ------VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKVD-FHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 368 ------~~-~~v~~l~~--sp~-g~-~l~~g~~dg~i~iwd~~~---~~~~~~~~~-~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
.. ..+..+|+ +|. ++ ++++...+|.+..|++.. .....+.+. +.- ...+-.+...+.. .
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvDd~~-g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAADDEY-G 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEETTT-T
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEcCCC-C
Confidence 22 56777888 774 44 688888999999999843 212222111 111 2567788888775 6
Q ss_pred EEEEEECCCeEEEEECC--c--ceeeEee---cCCCCCeEEEEE--ecCCC-EEEEEe-CCccEEEEeCC
Q 006424 433 RIMITSEDSKLRILDGV--D--VIHKFKG---LPKSGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD 491 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~--~--~~~~~~~---~~~~~~i~~v~~--sp~~~-~l~t~s-~dg~I~iwd~~ 491 (645)
.|+.+-++..|..++.. . ....... ..-...+..|++ .++++ +|++++ .+.+..+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 89999999777777754 1 1111211 112246888888 45555 666666 56799999986
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.53 E-value=0.028 Score=61.03 Aligned_cols=200 Identities=7% Similarity=-0.073 Sum_probs=117.6
Q ss_pred ccCeEEEEEcCC-CeEEEE-eCCCcEEEEecCCCeE-EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424 287 KGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 362 (645)
Q Consensus 287 ~~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~~~~-~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 362 (645)
-.....++|++. +.|+-+ ...+.|..++++.... ...+. .-.....+++.+..++++++-...+.|.+.++.+...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345678899874 555544 4467888888875432 22232 2256889999983444555555678999999987654
Q ss_pred EEee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424 363 VDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439 (645)
Q Consensus 363 ~~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~ 439 (645)
..+. ..-.....|+++|.+..|+.... .+.|...++.+...... ... .......+++++++..++++-..
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l---~~~----~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INS----EIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECS----SCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE---EeC----CCCCCcEEEEEccCCEEEEEeCC
Confidence 4433 34456788999997666666553 35677677665433211 111 12467899999876455666566
Q ss_pred CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.+.|..+|..................++++..+ ...++-...+.|...|..++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 788999887632221111111222346666544 344444456788888887664
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.52 E-value=0.12 Score=57.70 Aligned_cols=201 Identities=11% Similarity=-0.022 Sum_probs=122.8
Q ss_pred CccCeEEEEEcCC-CeE-EEEeCCCcEEEEecCCC----eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424 286 HKGDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358 (645)
Q Consensus 286 h~~~V~~l~~s~~-~~l-~s~s~dg~I~iwd~~~~----~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 358 (645)
....+..++|++. +.| ++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 4456788999874 544 45555678888888742 2222333 334567889987344566666667899999998
Q ss_pred CCcEEEee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 359 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 359 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
+.....+. ..-.....|+++|.+.+|+.... .+.|...++.+...... ... .......|++.+.+..+++
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l---v~~----~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTE----NIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECS----SCSCEEEEEEETTTTEEEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE---EeC----CCCCceEEEEecCCCeEEE
Confidence 76655543 33456889999998767766653 26788888876543221 111 1246789999977645555
Q ss_pred EEECCCeEEEEECCcc-eeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 436 ITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 436 ~~s~dg~I~iwd~~~~-~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+-...+.|...++... ...+ ..........+|++.. +.++++-...+.|...|..++.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 5556678999997632 2222 2211223455676643 2344444456788888866653
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.51 E-value=0.03 Score=55.28 Aligned_cols=179 Identities=9% Similarity=-0.060 Sum_probs=111.0
Q ss_pred CCcEEEEecCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCCC
Q 006424 307 DKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGK 382 (645)
Q Consensus 307 dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~ 382 (645)
...|+..|++... ..........+.+++|++.++.++.+-...+.|..+++.++.. ......-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888887653 2222233345778999984455555555678899999877632 12222234567889987555
Q ss_pred EEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecC
Q 006424 383 GFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLP 459 (645)
Q Consensus 383 ~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~ 459 (645)
.|+. -...+.|.++++.+...... ... .......+++.|.+. .|+.+. ..+.|...+............
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l---~~~----~~~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVL---FWQ----ELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE---ECS----SCSSEEEEEEEGGGT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred eEEEEECCCCEEEEEECCCCcEEEE---EeC----CCCCccEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 5544 44567899999876543221 111 124578999998753 444444 357888888663222222222
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424 460 KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 493 (645)
Q Consensus 460 ~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~ 493 (645)
.-.....++++|++..|+.+. ..+.|..+|++..
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 344678999999777666654 5688999998754
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.50 E-value=0.00091 Score=73.83 Aligned_cols=228 Identities=9% Similarity=0.018 Sum_probs=121.4
Q ss_pred EEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424 203 IWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 281 (645)
Q Consensus 203 V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (645)
..++++.++|++++.|+. ++.+.+||..+...... .
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-------------------------------------------~ 281 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-------------------------------------------P 281 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-------------------------------------------C
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-------------------------------------------C
Confidence 345678889999999984 56799999876322110 0
Q ss_pred eeccCccCeEEEEEcCCC-eEEEEe-CC-----CcEEEEecCCCeEEEEe-----cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424 282 ELHGHKGDVLDLAWSNSN-YLLSCS-MD-----KTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSID 349 (645)
Q Consensus 282 ~l~~h~~~V~~l~~s~~~-~l~s~s-~d-----g~I~iwd~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~l~s~s~d 349 (645)
.+..... -.+++..+++ .++.|+ .+ ..+.+||..+++....- .....-....+.. ++..++.|+.+
T Consensus 282 ~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~ 359 (656)
T 1k3i_A 282 DMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKK 359 (656)
T ss_dssp CCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGG
T ss_pred CCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCC
Confidence 1111111 1233444455 666666 34 56999999887654431 0000000011122 45555555544
Q ss_pred C---------cEEEEeCCCCcEEEeecc----------CCCeEEEEEcc-CCCEEEEEecCC-----------eEEEEEe
Q 006424 350 G---------KVRIWGVCEKRVVDWADV----------RDVISAICYIP-DGKGFIVGSITG-----------TCHFYKA 398 (645)
Q Consensus 350 g---------~i~vwd~~~~~~~~~~~~----------~~~v~~l~~sp-~g~~l~~g~~dg-----------~i~iwd~ 398 (645)
| .+..||..+......... ...-.++.|.. +++.+++|+.++ .+.+||.
T Consensus 360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~ 439 (656)
T 1k3i_A 360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439 (656)
T ss_dssp GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence 3 567888877653332111 11234444543 677788877542 5777777
Q ss_pred cCCceeeeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----------CeEEEEECCcceeeEee--cCCCCCe
Q 006424 399 SGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKG--LPKSGSQ 464 (645)
Q Consensus 399 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~~~~~~~--~~~~~~i 464 (645)
.+....... ..+.. ...-.++...|+| .+++.|+.+ ..+.+||..+..-.... .......
T Consensus 440 ~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h 513 (656)
T 1k3i_A 440 GTSPNTVFASNGLYF-----ARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH 513 (656)
T ss_dssp TSCCEEEECTTCCSS-----CCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred CCCCeeEEccCCCCC-----CcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc
Confidence 665542211 01111 1122345667787 788888754 46899997643211111 1122233
Q ss_pred EEEEEecCCCEEEEEeC
Q 006424 465 MSASFTTTGKHIISIGD 481 (645)
Q Consensus 465 ~~v~~sp~~~~l~t~s~ 481 (645)
....+.|+++.++.||.
T Consensus 514 s~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 514 SISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEEECTTSCEEEEECC
T ss_pred cHhhcCCCcEEEecCCC
Confidence 44556799999999985
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.46 E-value=0.0066 Score=59.34 Aligned_cols=162 Identities=9% Similarity=0.125 Sum_probs=106.8
Q ss_pred CcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCcEEEe-ecc-------CCCeEEEEE---ccCCCEEEEEec------
Q 006424 328 NYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDW-ADV-------RDVISAICY---IPDGKGFIVGSI------ 389 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~-~~~-------~~~v~~l~~---sp~g~~l~~g~~------ 389 (645)
-...+++|++ ....|..++ ..++|..||...+..... ... ...+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3456789988 455555555 789999999986654443 111 113578999 688877776442
Q ss_pred -------CCeEEEEEec---CCceeeeEEeecccccc-------CCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcc
Q 006424 390 -------TGTCHFYKAS---GNDLKLEKVDFHDRKKT-------SGNKITGIQFSRDESQRIMITSED-SKLRILDGVDV 451 (645)
Q Consensus 390 -------dg~i~iwd~~---~~~~~~~~~~~~~~~~~-------~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~ 451 (645)
+..+..||+. +.+.. ....+...... .......++..++| +..++++.. +.|...+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~-~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPV-WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCS-EEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEE-EEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC
Confidence 6789999998 45432 22222211000 11347899999998 788888888 88887775422
Q ss_pred -eeeEeec----CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 452 -IHKFKGL----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 452 -~~~~~~~----~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
...+... ......+.|+++|+|+.|++....|.+..+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2222211 1223467999999999998887799999999884
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.42 E-value=0.034 Score=61.97 Aligned_cols=182 Identities=8% Similarity=-0.073 Sum_probs=116.3
Q ss_pred CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----cEEE-eeccCCCeEEEEEccC
Q 006424 306 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVISAICYIPD 380 (645)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~----~~~~-~~~~~~~v~~l~~sp~ 380 (645)
....|+..++..............+..++|++.++.++++-...+.|+.+++... .... +.........|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888766655555556678899999844445555555678999998753 2222 2224456778999987
Q ss_pred CCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeec
Q 006424 381 GKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL 458 (645)
Q Consensus 381 g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 458 (645)
++.|+.+ ...+.|.+.++.+...... +. .. ......|++.|.+..++++-... +.|...++..........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l-~~-~~-----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE-EE-CT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEE-Ee-CC-----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 7655555 4567899999886553221 11 11 24578999999753444444333 788888876433333333
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424 459 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 494 (645)
Q Consensus 459 ~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~ 494 (645)
..-....+|++++.+..|+.+. ..+.|...+++...
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 3445789999998777776664 45789999987653
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.41 E-value=0.034 Score=54.82 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCcEEEEecC--CCeEEEEecC-------C-CcEEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC-------CCcEEEee
Q 006424 307 DKTVRMWQVG--CNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA 366 (645)
Q Consensus 307 dg~I~iwd~~--~~~~~~~~~~-------~-~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~-------~~~~~~~~ 366 (645)
+++|.+|++. ++. +..+.. . ..+..+++ +|..+. ++++...+|.+..|++. +.+.+...
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5789999773 343 444421 1 45667777 663343 67888889999999883 23455566
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE--cCCCCcEEEEEE-CCCe
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK 442 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~--s~~g~~~l~~~s-~dg~ 442 (645)
...+.+..+...+....|+++-++..|..|+....... ...+..... ..-...+..+++ .+++..+|++++ .++.
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 67788999999998899999999977666664422210 111111110 111235777777 455533666666 5679
Q ss_pred EEEEECC
Q 006424 443 LRILDGV 449 (645)
Q Consensus 443 I~iwd~~ 449 (645)
..+||..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999975
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.40 E-value=0.22 Score=54.02 Aligned_cols=190 Identities=5% Similarity=-0.114 Sum_probs=101.8
Q ss_pred CcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCc---ccCCCCceEEecccCCCcceeecCCCceecc
Q 006424 201 GCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
..+..++|++.+..| ++-..++.|..+++................ ......+.+.+.......+..... +
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~------d 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL------D 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET------T
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEec------C
Confidence 457899999865544 455567889888887643322221111111 111122333332222222222211 2
Q ss_pred CCCceeec-cCccCeEEEEEcCC-CeEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 006424 277 ESPLQELH-GHKGDVLDLAWSNS-NYLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGK 351 (645)
Q Consensus 277 ~~~~~~l~-~h~~~V~~l~~s~~-~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~ 351 (645)
+.....+. ..-.....+++.|. |.|+.+.. .+.|...+++..........-.....+++++ +++.|+.+. ..+.
T Consensus 111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~ 189 (628)
T 4a0p_A 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNL 189 (628)
T ss_dssp STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCE
Confidence 32223332 33345689999984 66665553 4677777776444333334455788999998 656555554 4678
Q ss_pred EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 398 (645)
Q Consensus 352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~ 398 (645)
|..+|+.+.....+.........+++.. +..+++-...+.|...|.
T Consensus 190 I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 190 IESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 9999987654433333334455677654 333333334566666664
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.37 E-value=0.051 Score=54.53 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=116.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424 201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 280 (645)
Q Consensus 201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (645)
..-+.|+|.|+|+++++ ..+|.|.+++ ++...... ...
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~- 68 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS- 68 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence 35679999999985555 5668899888 32110000 000
Q ss_pred eeeccCccCeEEEEEcCC----CeEEEEeC-C-----CcEEEEecCCCe-----EE-EEec----CCCcEEEEEEeeCCC
Q 006424 281 QELHGHKGDVLDLAWSNS----NYLLSCSM-D-----KTVRMWQVGCNQ-----CL-NVFD----HHNYVTCVQFNPIDD 340 (645)
Q Consensus 281 ~~l~~h~~~V~~l~~s~~----~~l~s~s~-d-----g~I~iwd~~~~~-----~~-~~~~----~~~~v~~l~~~p~~~ 340 (645)
.+.........++++|+ +.|+.+.. . +.|..++...+. .+ ..+. .......++|.| ++
T Consensus 69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG 146 (352)
T 2ism_A 69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG 146 (352)
T ss_dssp -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence 11112345788999997 55444333 2 678888876431 11 1122 112346899999 88
Q ss_pred CEEEEEeC-------------CCcEEEEeCCCC-------------c-EEEeeccCCCeEEEEEcc-CCCEEEEEecCCe
Q 006424 341 NYFISGSI-------------DGKVRIWGVCEK-------------R-VVDWADVRDVISAICYIP-DGKGFIVGSITGT 392 (645)
Q Consensus 341 ~~l~s~s~-------------dg~i~vwd~~~~-------------~-~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~ 392 (645)
.++++.+. .|.|.-++.... . .+...++ .....++|+| +|.++++-...+.
T Consensus 147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC--
T ss_pred CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC
Confidence 76666432 145666665431 0 1111122 2356788999 5554444322222
Q ss_pred E------EEEEecCCce---e------------eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424 393 C------HFYKASGNDL---K------------LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 393 i------~iwd~~~~~~---~------------~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
+ .+.-+..... + .....+ ........++| .+| .++++....+.|...+....
T Consensus 226 ~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 226 EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp ----CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEE
T ss_pred CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCC
Confidence 1 1222221110 0 000000 11234567777 344 56666666677877765421
Q ss_pred e--------eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424 452 I--------HKFKGLPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 452 ~--------~~~~~~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
. ..+. .....+..+++.|||.+.++..
T Consensus 299 ~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 299 RGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred Ccceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 1 1121 1346789999999998777654
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.33 E-value=0.23 Score=53.99 Aligned_cols=196 Identities=7% Similarity=-0.030 Sum_probs=125.8
Q ss_pred cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424 288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364 (645)
Q Consensus 288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 364 (645)
..+..++|++. +.|+ +-..++.|..++++.......+.. ......+++.+..++++++-...+.|.+.++.+.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 45778999975 4544 555678899998875443333332 23567888887345555665567889999998765433
Q ss_pred ee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424 365 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441 (645)
Q Consensus 365 ~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg 441 (645)
+. ..-.....++++|....|+.... .+.|...++.+...... ... ......+++++++..++++-...+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l---~~~-----~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL---VPN-----VGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECS-----CSSEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE---ECC-----CCCcceEEEccccCEEEEEECCCC
Confidence 32 34456789999996666666653 46777777776543221 111 256789999997645566666678
Q ss_pred eEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 442 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 442 ~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
.|..+|+... ...+.. ......++++.. +..+++-...+.|...|..++.
T Consensus 189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTSCSCEEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCceEEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 9999997632 222222 334556788765 4444454457888888866553
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.31 E-value=0.18 Score=50.90 Aligned_cols=204 Identities=12% Similarity=0.148 Sum_probs=132.2
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-----CCCcEEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGS-------IDGKVR 353 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s-------~dg~i~ 353 (645)
...|..-.|-.+..|+-.+ +..|+-|+++. ..+++.|. ....|.....++ +.+.++..+ -.|.+.
T Consensus 105 ~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 105 TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEE
Confidence 3567777887666555444 35799999964 35666664 234677777777 677655433 247789
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEccC---CCEEEEEec---CCeEEEEEecCC-----ceeeeEEeeccccccCCCCeE
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~g~~---dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+|..+.+....+.+|......+.+..+ ...++.+.. .+.+++.++... ..........-......+-..
T Consensus 183 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 999988888878777665554444321 124444444 378999998543 111222222222223345667
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++..++.- ..++.-+.-|.|.+||+.+....+...-....|...+-+....=++.....|.|.--.++..
T Consensus 263 amqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 88888875 68999999999999999988888887666667766665555555555556776666666554
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.31 E-value=0.16 Score=50.27 Aligned_cols=193 Identities=8% Similarity=0.068 Sum_probs=101.2
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE-EeCCCCcEEE
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRI-WGVCEKRVVD 364 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v-wd~~~~~~~~ 364 (645)
+.+..+.+.+++.++.++.++.|..- .+.++.-... .....+..+.+.| ++.+++++. +|.+.. .|-....-..
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 34667777666655555556654321 1223322222 3455788999998 777776654 455444 3421111111
Q ss_pred -eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424 365 -WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 443 (645)
Q Consensus 365 -~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I 443 (645)
.......+..+.+.++++.+ +++.+|.+++.+..... ........ .......+.++.+.+++ .++++ +.++.|
T Consensus 199 ~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~-tW~~~~~~--~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i 272 (327)
T 2xbg_A 199 HNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE-NWGELLSP--LRRNSVGFLDLAYRTPN-EVWLA-GGAGAL 272 (327)
T ss_dssp EECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE-EECCCBCT--TSSCCSCEEEEEESSSS-CEEEE-ESTTCE
T ss_pred CCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC-eeEeccCC--cccCCcceEEEEecCCC-EEEEE-eCCCeE
Confidence 12345678889999988755 45567877765422111 11111111 00112358889999875 45454 456766
Q ss_pred EEE-ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424 444 RIL-DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 490 (645)
Q Consensus 444 ~iw-d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~ 490 (645)
..- |....-..... ......+.++.|.+++. +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 432 21111111111 11234677888876554 666678898776653
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.044 Score=57.12 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=95.5
Q ss_pred CeEEEEEcCC--CeEEEEeC-CCcEEEEecCCCeEEEEecC----CCcEEEEEE-------eeCCCCEEEEEeCCC----
Q 006424 289 DVLDLAWSNS--NYLLSCSM-DKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG---- 350 (645)
Q Consensus 289 ~V~~l~~s~~--~~l~s~s~-dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~-------~p~~~~~l~s~s~dg---- 350 (645)
....|+|+|. +.|+.+.. .+.|++.|...+........ ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 4568899983 45555544 46789999988777665532 235899999 99 888666666544
Q ss_pred ---cEEEEeCCC-CcE------EEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEec-------CCce-----e---
Q 006424 351 ---KVRIWGVCE-KRV------VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKAS-------GNDL-----K--- 404 (645)
Q Consensus 351 ---~i~vwd~~~-~~~------~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~-------~~~~-----~--- 404 (645)
.|.+++... +.. ..+.. ......++++|++ .++++-..++.|..+|+. +... +
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665433 122 11211 2345678899954 445555677889999997 4443 0
Q ss_pred --eeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424 405 --LEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 448 (645)
Q Consensus 405 --~~~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~ 448 (645)
... ..... ......++|+|+|..++++-+..+.|+.++.
T Consensus 298 g~~~~l~~~~~-----~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 298 NTFKQLFTIAD-----PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEEEEECSS-----SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEecCC-----CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 111 11111 2456799999998334555566789998664
No 300
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.22 E-value=0.0098 Score=64.24 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=53.4
Q ss_pred CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424 349 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428 (645)
Q Consensus 349 dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 428 (645)
+|.|..||+.+++.+-.......+..-.....+.++++|+.||.++.||.++++.... ...... ....-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~g-----~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGSG-----IVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCCC-----cccCceEEEE
Confidence 5789999999998765433333332222223567888899999999999998886443 222211 1112255667
Q ss_pred CCCcEEEEEEC
Q 006424 429 DESQRIMITSE 439 (645)
Q Consensus 429 ~g~~~l~~~s~ 439 (645)
+|.+++++.+.
T Consensus 539 ~G~qYv~~~~G 549 (582)
T 1flg_A 539 DGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEcc
Confidence 77566666554
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.1 Score=52.28 Aligned_cols=228 Identities=12% Similarity=0.030 Sum_probs=119.4
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEE--EEec----CCCcEEEEEEeeCC---CCEEEEEeC-C-----Cc
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPID---DNYFISGSI-D-----GK 351 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~--~~~~----~~~~v~~l~~~p~~---~~~l~s~s~-d-----g~ 351 (645)
-..-..++|.|++.++.+..+|.|.+++ .++.. ..+. .......++++| + +..|+++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 3456789999999777778889999998 44422 1111 234688999999 6 444444433 2 56
Q ss_pred EEEEeCCCCcE------EE-ee---ccCCCeEEEEEccCCCEEEEEec-------------CCeEEEEEecCCce-----
Q 006424 352 VRIWGVCEKRV------VD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----- 403 (645)
Q Consensus 352 i~vwd~~~~~~------~~-~~---~~~~~v~~l~~sp~g~~l~~g~~-------------dg~i~iwd~~~~~~----- 403 (645)
|..|+...+.+ .. +. ........+.|.|+|.+.++.+. .|.|.-++....-.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 88888765421 11 11 11223468999999965554322 14555555443100
Q ss_pred ------eeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECCCe--------EEEEECCcc---------------ee
Q 006424 404 ------KLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSEDSK--------LRILDGVDV---------------IH 453 (645)
Q Consensus 404 ------~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg~--------I~iwd~~~~---------------~~ 453 (645)
....+. .+. .....++|+| +| .++++-...+. |.+...... ..
T Consensus 187 ~~~~~~~~~i~a-~G~-----rnp~g~a~d~~~g-~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 187 LGRRGARPEVYS-LGH-----RNPQGLAWHPKTG-ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTCTTSCTTEEE-ECC-----SEECCCEECTTTC-CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred cCCCCCCccEEE-EcC-----CCcccEEEECCCC-CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 001111 111 2356788999 55 55554433333 444331110 00
Q ss_pred eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee-ecCCcEEEEecCCCCccccc
Q 006424 454 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPGIGTEQKS 530 (645)
Q Consensus 454 ~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~s~~~~~l~~ 530 (645)
......+......++| .+|.++++.-..+.|...+++....... ......+ ...+....+++.|||...++
T Consensus 260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~-----~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR-----VLRVETALSGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE-----EEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee-----ecchheecccCCCeeEEEECCCCcEEEE
Confidence 0111112335567888 4676666665667777777754321100 0001111 23356778889999854443
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.13 E-value=0.1 Score=52.02 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=87.1
Q ss_pred CeEEEEEcC--CC--eEEEEeC---CCcEEEEecCCC--e--EEEEecC--CCcEEEEEEeeCCCCEEEEEe--------
Q 006424 289 DVLDLAWSN--SN--YLLSCSM---DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGS-------- 347 (645)
Q Consensus 289 ~V~~l~~s~--~~--~l~s~s~---dg~I~iwd~~~~--~--~~~~~~~--~~~v~~l~~~p~~~~~l~s~s-------- 347 (645)
....+.+.+ ++ +|+.+.. +.+|.+|+++.+ . .+..+.+ -...+.+.+.+ ++.++++..
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence 444555533 33 4555422 467888877543 2 2223332 34678999999 887776654
Q ss_pred ---------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccC
Q 006424 348 ---------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 348 ---------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
..|.|+.+|. +++......-...+.++|+||++.++++. ..+.|..|++...........+..
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----- 264 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----- 264 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----
Confidence 1244555555 34333344445678999999999888775 468999999874322111111111
Q ss_pred CCCeEEEEEcC-CCCcEEEEEECC-CeEEEEE
Q 006424 418 GNKITGIQFSR-DESQRIMITSED-SKLRILD 447 (645)
Q Consensus 418 ~~~i~~i~~s~-~g~~~l~~~s~d-g~I~iwd 447 (645)
....-.+++.+ +| .+.+++..+ +.|..|+
T Consensus 265 ~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 265 DTLVDNISVDPVTG-DLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SSEEEEEEECTTTC-CEEEEEESCHHHHHSCC
T ss_pred CCCCceEEEeCCCC-cEEEEecCCceEEEEEC
Confidence 25567888998 57 555555433 3444444
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.10 E-value=0.051 Score=54.74 Aligned_cols=148 Identities=11% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc---EEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce----------
Q 006424 339 DDNYFISGSIDGKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL---------- 403 (645)
Q Consensus 339 ~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~---------- 403 (645)
++..++.+- ++.||.-++..+. .+.... .-..+..+..+|+|++||+.+ +..|.|..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 455555543 4667776765322 222221 123678899999999999886 45888888873221
Q ss_pred -eeeEEeeccccccCCCCeEEEEEcCCCC--cEEEEEECCCeEEEEECCc----ce------eeEeecCCCCCeEEEEEe
Q 006424 404 -KLEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT 470 (645)
Q Consensus 404 -~~~~~~~~~~~~~~~~~i~~i~~s~~g~--~~l~~~s~dg~I~iwd~~~----~~------~~~~~~~~~~~i~~v~~s 470 (645)
....+...........+|..+.|+|-+. ..|++-..|+.|++||+.. +. ..+........|.+++|+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1112222221111247899999999643 4899999999999999763 11 111112233678899999
Q ss_pred cCCCEEEEEe--CCccEEEE
Q 006424 471 TTGKHIISIG--DDCRVYVW 488 (645)
Q Consensus 471 p~~~~l~t~s--~dg~I~iw 488 (645)
+++-.|...+ .+|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887666654 77777643
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.07 E-value=0.3 Score=48.87 Aligned_cols=231 Identities=14% Similarity=0.081 Sum_probs=120.5
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 279 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (645)
-..-+.|+|.|+|+++++ ..+|.|++++. ++. . .+. ..+
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~--~~~------------------------------------~~~ 66 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-K--LVA------------------------------------SFD 66 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-E--EEE------------------------------------ECC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-e--Eee------------------------------------ccc
Confidence 345789999999985555 55688988863 221 0 000 000
Q ss_pred ceeeccCccCeEEEEEcCC----CeEEEEeC----C----CcEEEEecCCC-------eEE-EEec--CCCcEEEEEEee
Q 006424 280 LQELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNP 337 (645)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~~----~~l~s~s~----d----g~I~iwd~~~~-------~~~-~~~~--~~~~v~~l~~~p 337 (645)
...........++++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......++|.|
T Consensus 67 --v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p 144 (354)
T 3a9g_A 67 --VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP 144 (354)
T ss_dssp --CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT
T ss_pred --eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC
Confidence 01112345778999986 55554432 3 56777776543 111 1121 112346789999
Q ss_pred CCCCEEEEEeC-------------CCcEEEEeCCCC--------c-EEEeeccCCCeEEEEEcc-CCCEEEEEecCC---
Q 006424 338 IDDNYFISGSI-------------DGKVRIWGVCEK--------R-VVDWADVRDVISAICYIP-DGKGFIVGSITG--- 391 (645)
Q Consensus 338 ~~~~~l~s~s~-------------dg~i~vwd~~~~--------~-~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg--- 391 (645)
++.++++.+. .|.|.-++.... . .+...++ .....++|+| +|+++++-...+
T Consensus 145 -DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~d 222 (354)
T 3a9g_A 145 -DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHD 222 (354)
T ss_dssp -TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCC
T ss_pred -CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCc
Confidence 8887766442 245555555432 0 1112222 2356799999 565444432221
Q ss_pred eEEEEEecCC--------c-----eeeeEEeeccccccCCCCeEEEEEc-------CCCCcEEEEEECCCeEEEEECCcc
Q 006424 392 TCHFYKASGN--------D-----LKLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGVDV 451 (645)
Q Consensus 392 ~i~iwd~~~~--------~-----~~~~~~~~~~~~~~~~~~i~~i~~s-------~~g~~~l~~~s~dg~I~iwd~~~~ 451 (645)
.|.+...... . .......+. ........+.|. .+| .++++....+.|...++...
T Consensus 223 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~----~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 223 EVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG----SETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT----TCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGG
T ss_pred EEEEecCCCcCCCCcccCCCCCCCCcCCEeecC----CCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCC
Confidence 2333221100 0 000000010 112457788884 455 66666666778888886632
Q ss_pred --ee-eEeec-CCCCCeEEEEEecCCCEEEEEe
Q 006424 452 --IH-KFKGL-PKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 452 --~~-~~~~~-~~~~~i~~v~~sp~~~~l~t~s 480 (645)
.. ..... .....+..+++.|||.+.++..
T Consensus 298 g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 298 MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 11 11111 1245789999999997776654
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.02 E-value=0.53 Score=50.98 Aligned_cols=281 Identities=8% Similarity=-0.057 Sum_probs=135.4
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCc--ccC-CCCceEEecccCCCcceeecCCCceecc
Q 006424 201 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGF--GSN-AKEGKIKFGKKKSSHVPVVIPDEVFQIE 276 (645)
Q Consensus 201 ~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (645)
.....+++.+.+. +.++-...+.|.+.++................ +.. ...+.+.+. .......+ .....+
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~t-D~g~~~~I----~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT-DWGEVPKI----ERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEE-ECSSSCEE----EEEETT
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEe-ccCCCCEE----EEEECC
Confidence 4578899998555 55555667889999987643322211111111 111 112233222 21111011 001112
Q ss_pred CCCceeec-cCccCeEEEEEcCC-CeEEEE-eCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424 277 ESPLQELH-GHKGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 352 (645)
Q Consensus 277 ~~~~~~l~-~h~~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i 352 (645)
+.....+. ..-.....++++++ +.|+.+ +..+.|...|++......... .......+++.. +.++++-...+.|
T Consensus 159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V 236 (619)
T 3s94_A 159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSI 236 (619)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS--SEEEEECTTTCSE
T ss_pred CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEE
Confidence 33333332 23345688999875 455544 556788888887543322221 122234666654 3444444456778
Q ss_pred EEEeCCCCcEEEe-ec-----------cC--------------CCeEEEEE-----------ccCC--------------
Q 006424 353 RIWGVCEKRVVDW-AD-----------VR--------------DVISAICY-----------IPDG-------------- 381 (645)
Q Consensus 353 ~vwd~~~~~~~~~-~~-----------~~--------------~~v~~l~~-----------sp~g-------------- 381 (645)
...|..+++.... .. |. +....+|+ .|.|
T Consensus 237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 316 (619)
T 3s94_A 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316 (619)
T ss_dssp EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence 8888766542111 00 00 00111121 1111
Q ss_pred CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC
Q 006424 382 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS 461 (645)
Q Consensus 382 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 461 (645)
..++.-+..+.|+..++.............+ -..+..+.|.+.+..++++-...+.|+.++.............-
T Consensus 317 ~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~-----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~ 391 (619)
T 3s94_A 317 TELLLLARRTDLRRISLDTPDFTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 391 (619)
T ss_dssp SEEEEEEESSCEEEEESSSTTCCCEECCCSC-----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred ceEEEEEcccceEEEecCCCccceeEEeccc-----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC
Confidence 1111112233455555543322111111111 24577899998653555555567889999876322222222233
Q ss_pred CCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424 462 GSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 462 ~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~ 493 (645)
....++++++.+. +.++-+..+.|.+.+++..
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 5677899997555 4455456789999998765
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.92 E-value=0.0046 Score=68.42 Aligned_cols=199 Identities=11% Similarity=-0.025 Sum_probs=118.5
Q ss_pred cCeEEEEEcCC-CeEEEE-eCCCcEEEEecCC----CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424 288 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360 (645)
Q Consensus 288 ~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~----~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 360 (645)
..+..++|++. +.|+.+ ...+.|+.+++.. ......+. .......+++.+..++++++-...+.|.++++.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45667888875 455544 4567899998875 22222221 12235667887635555565556788999999876
Q ss_pred cEEEeec-cCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 361 RVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 361 ~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
....+.. .......++++|.+.+|+.+.. .+.|..+++.+..... + ... .......|+|+|++..++++-
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l-~~~----~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VTE----NIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--E-SCS----SCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--E-EeC----CCCCccEEEEeccCCEEEEEe
Confidence 6555433 2345678899997666655543 2678777776543221 1 111 113456899999865666666
Q ss_pred ECCCeEEEEECCcc-eeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424 438 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 494 (645)
Q Consensus 438 s~dg~I~iwd~~~~-~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~ 494 (645)
+..+.|..++.... ...+.. ........++++..+ .++++....+.|..++..++.
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 77789999997532 222221 112233445666543 444555567889999876653
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.88 E-value=0.42 Score=47.54 Aligned_cols=191 Identities=12% Similarity=0.148 Sum_probs=109.7
Q ss_pred cCeEEEEEcCCCeEEEEe-------------CCCcEEEEecCC--CeEEEEec--------CCCcEEEEEEeeC-CCC-E
Q 006424 288 GDVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQCLNVFD--------HHNYVTCVQFNPI-DDN-Y 342 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s-------------~dg~I~iwd~~~--~~~~~~~~--------~~~~v~~l~~~p~-~~~-~ 342 (645)
...-++...++|.+++++ .+|.|.++|..+ ++. ..+. ..-....+.+.+. ++. +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345566778888766665 689999999873 222 2221 1235677777662 233 3
Q ss_pred EEEE-eC--CCcEEEEeCCC--CcEEEe---ec-cCCCeEEEEEccCCCEEEEEec-----------------CCeEEEE
Q 006424 343 FISG-SI--DGKVRIWGVCE--KRVVDW---AD-VRDVISAICYIPDGKGFIVGSI-----------------TGTCHFY 396 (645)
Q Consensus 343 l~s~-s~--dg~i~vwd~~~--~~~~~~---~~-~~~~v~~l~~sp~g~~l~~g~~-----------------dg~i~iw 396 (645)
|+++ .. +.+|.+|++.. +..... .+ .-...+.+.+.++|.+.++... .|.+.-+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4444 33 46777877654 322221 11 1245789999999987666531 2444444
Q ss_pred EecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-c-eeeEeecCCCCCeEEEEEec-CC
Q 006424 397 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-V-IHKFKGLPKSGSQMSASFTT-TG 473 (645)
Q Consensus 397 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~-~~~~~~~~~~~~i~~v~~sp-~~ 473 (645)
|. ..... . ..+. ...+.++|+||+..++++-+..+.|..|++.. . ..........+..-.+++++ +|
T Consensus 209 d~--~~~~~--~-~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 209 SP--NDVRV--V-AEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp CT--TCCEE--E-EEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred EC--CeEEE--e-ecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 43 22211 1 1111 45689999999855555666788999999652 1 11111111245677889998 58
Q ss_pred CEEEEEeCC-ccEEEEe
Q 006424 474 KHIISIGDD-CRVYVWN 489 (645)
Q Consensus 474 ~~l~t~s~d-g~I~iwd 489 (645)
++.+++..+ +.|..|+
T Consensus 279 ~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CEEEEEESCHHHHHSCC
T ss_pred cEEEEecCCceEEEEEC
Confidence 888777644 4554443
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.82 E-value=0.44 Score=47.56 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=39.8
Q ss_pred CCeEEEEEcC-------CCCcEEEEEECCCeEEEEECCcc--eeeEeec-CCCCCeEEEEEecCCCEEEEEe-CCccE
Q 006424 419 NKITGIQFSR-------DESQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRV 485 (645)
Q Consensus 419 ~~i~~i~~s~-------~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s-~dg~I 485 (645)
.....+.|.. +| .++++....+.|...++... ....... .....+..+++.|||.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3566777764 34 56666667778877775532 1111111 1235789999999998766543 34544
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.73 E-value=0.56 Score=46.83 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=120.6
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEec----CCCcEEEEEEeeCC---CCEEEEEeC----C----C
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G 350 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~----~~~~v~~l~~~p~~---~~~l~s~s~----d----g 350 (645)
-.....++|.|++.|+.+..+|.|+++|. .++ .+..+. .......++++| + +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 34578899999998888888899999973 454 222211 234688999999 5 344444332 2 5
Q ss_pred cEEEEeCCCC--c------EEE-ee-ccCCCeEEEEEccCCCEEEEEec-------------CCeEEEEEecCCce----
Q 006424 351 KVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL---- 403 (645)
Q Consensus 351 ~i~vwd~~~~--~------~~~-~~-~~~~~v~~l~~sp~g~~l~~g~~-------------dg~i~iwd~~~~~~---- 403 (645)
.|..|+.... . +.. +. ........+.|.|+|.+.++.+. .|.|.-++....-.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776654 1 111 11 11223567999999975555322 14455454433200
Q ss_pred --eeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECCC---eEEEEECCc---------------ce-eeEeecCCC
Q 006424 404 --KLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSEDS---KLRILDGVD---------------VI-HKFKGLPKS 461 (645)
Q Consensus 404 --~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg---~I~iwd~~~---------------~~-~~~~~~~~~ 461 (645)
....+. .+. .....++|+| +| .++++-...+ .|.+..... .. ..+......
T Consensus 186 f~~~~i~a-~G~-----rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 186 FPNSPIWS-YGH-----RNPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp STTCCEEE-ECC-----SCCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCcEEE-Ecc-----CCcceEEEeCCCC-CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 001111 111 2356799999 55 4444433222 244433111 00 011110123
Q ss_pred CCeEEEEEe-------cCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee--cCCcEEEEecCCCCccc
Q 006424 462 GSQMSASFT-------TTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQ 528 (645)
Q Consensus 462 ~~i~~v~~s-------p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~v~~s~~~~~l 528 (645)
.....++|. .+|.++++.-..+.|...+++..... .....+. ..+....+++.|||...
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~--------~~~~~~~~~~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV--------RKISTFFKNVFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE--------EEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc--------cceeeeccCCCCCeeEEEECCCCcEE
Confidence 467888883 56777777666778888887643110 0011121 13457788888888533
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.63 E-value=1.2 Score=49.49 Aligned_cols=193 Identities=12% Similarity=0.160 Sum_probs=114.0
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
...|.++.-..++.|..|+.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -+..||..+++...+
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3468888777778888888765 7899988765433111 2335777654 3 45 45556655 688899887776554
Q ss_pred ec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424 366 AD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 366 ~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.. ....|.++....+|.+. +|+.+ -+..|+..+..... .............|.++...+++ ..|..|+.
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~- 210 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE- 210 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence 11 23468888887777644 45554 47778776554321 11111101112357888877765 44445553
Q ss_pred CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 441 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 441 g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
+.+..+|..... ..+... ....|.++....+|.+.+. +.+ -+.+++..+.
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT 261 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC
Confidence 468888865322 222211 2335788888877776654 444 4777887654
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.54 E-value=0.0081 Score=66.43 Aligned_cols=179 Identities=8% Similarity=-0.065 Sum_probs=105.4
Q ss_pred CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEeCCC----CcEEEee-ccCCCeEEEEEccC
Q 006424 307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD 380 (645)
Q Consensus 307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~----~~~~~~~-~~~~~v~~l~~sp~ 380 (645)
.+.|+..++..............+..++|++ .++.|+.+ ...+.|+.+++.+ .....+. ........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888888766655554445677899998 55555554 4467899999875 2222222 12234567888865
Q ss_pred CCEEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeec
Q 006424 381 GKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL 458 (645)
Q Consensus 381 g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 458 (645)
+..|+. -...+.|.++++.+...... .... ......+++.|.+..++++-... +.|..+++..........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l---~~~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTL---FREQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEE---CCCS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEE---EeCC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 544444 44567899998876543211 1110 13456788998753444443333 678887765322222111
Q ss_pred CCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCC
Q 006424 459 PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL 493 (645)
Q Consensus 459 ~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~ 493 (645)
..-.....|+|+|++..|+.+ +..+.|..++++..
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 123456789999976655544 45678999998754
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.43 E-value=0.053 Score=49.41 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=83.1
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC--------eEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV--------ISAICYIPDGKGFIVGSITGTCHFYKAS 399 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------v~~l~~sp~g~~l~~g~~dg~i~iwd~~ 399 (645)
..+..++|+| ++.+.++ .+|.++-.+..+.....+...... ..++.|.|+|.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 3677999999 8887766 678877777655222221111111 578999999987777 56988777653
Q ss_pred CCceeee-----EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc------eeeEeecCCCCCeEEE
Q 006424 400 GNDLKLE-----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV------IHKFKGLPKSGSQMSA 467 (645)
Q Consensus 400 ~~~~~~~-----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~------~~~~~~~~~~~~i~~v 467 (645)
+...... .+.-.+ -..+..+.+.|+| .+.++. |+.++-...- .. .....+......-..+
T Consensus 116 ~~~~~~Wl~~a~~vg~~g-----w~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG-----WSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp CSTTCCHHHHSEEEECSS-----GGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred cCCCCceeccccEeccCC-----CCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 2221110 111000 1467899999998 454444 7775433211 00 1122222233344557
Q ss_pred EEecCCCEEEEEeCCccEE
Q 006424 468 SFTTTGKHIISIGDDCRVY 486 (645)
Q Consensus 468 ~~sp~~~~l~t~s~dg~I~ 486 (645)
.|++++.+.+.. +|.++
T Consensus 188 ~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 188 FFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EECTTSCEEEEE--TTEEE
T ss_pred EECCCCcEEEEe--CCeEE
Confidence 789998877776 66443
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.39 E-value=0.28 Score=47.60 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=93.8
Q ss_pred eEEEEeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCcEEEeec
Q 006424 300 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 300 ~l~s~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~ 367 (645)
.++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55566644 358889988776543322 11111222222 677788887653 58889998877555432
Q ss_pred cCCC--eEEEEEccCCCEEEEEecC-------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 368 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 368 ~~~~--v~~l~~sp~g~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
...+ -.+++. -+++.++.|+.+ ..+..||+.+....... ..... ......+.+ ++ .+++.|+
T Consensus 142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG 212 (302)
T 2xn4_A 142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTR----RSGAGVGVL--NN-LLYAVGG 212 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECC
T ss_pred CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccc----cccccEEEE--CC-EEEEECC
Confidence 2211 122222 356666666542 35888998876543221 11111 111122222 33 6777776
Q ss_pred CC-----CeEEEEECCcceee-EeecC-CCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCC
Q 006424 439 ED-----SKLRILDGVDVIHK-FKGLP-KSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 493 (645)
Q Consensus 439 ~d-----g~I~iwd~~~~~~~-~~~~~-~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~ 493 (645)
.+ ..+.+||..+..-. ..... ..... +++ ..+++.++.|+.++ .+.+||..+.
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 54 46889997643221 11111 11111 122 23677777777553 4788887765
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.36 E-value=0.28 Score=47.57 Aligned_cols=182 Identities=9% Similarity=0.048 Sum_probs=94.7
Q ss_pred CeEEEEeCC-----CcEEEEecCCCe---EEEEe--cCCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEE
Q 006424 299 NYLLSCSMD-----KTVRMWQVGCNQ---CLNVF--DHHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV 363 (645)
Q Consensus 299 ~~l~s~s~d-----g~I~iwd~~~~~---~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~ 363 (645)
..++.|+.+ ..+.+||..+++ -...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 356666654 468899987765 33222 111111122222 56777777654 35889999887655
Q ss_pred EeeccCC--CeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 364 DWADVRD--VISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 364 ~~~~~~~--~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
....... .-.+++. .+++.++.|+.+ ..+..||+.+....... ..... ......+.+ ++ .+++.
T Consensus 142 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~i~v~ 212 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMATK----RSGAGVALL--ND-HIYVV 212 (301)
T ss_dssp EEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEE
T ss_pred ECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCcc----cccceEEEE--CC-EEEEE
Confidence 4332211 1122222 367777777654 46888998876553221 11111 111222222 33 67777
Q ss_pred EECC-----CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424 437 TSED-----SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 493 (645)
Q Consensus 437 ~s~d-----g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~ 493 (645)
|+.+ ..+.+||..+..-.... .........+. -+++.++.|+.+ ..+.+||..+.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7664 46889997643221111 11111112222 367777777755 45778887765
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.23 E-value=0.77 Score=45.46 Aligned_cols=149 Identities=11% Similarity=0.007 Sum_probs=82.7
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------eccCCCeEEEEEccC---CCEEEEEe---cCCeE
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRDVISAICYIPD---GKGFIVGS---ITGTC 393 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~v~~l~~sp~---g~~l~~g~---~dg~i 393 (645)
-...+.++|.| ++.++++--..|.|++++..++....+ .........|+++|+ +..|++.. .++.|
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34578999999 888776665589999998766554322 123456889999995 44555432 34556
Q ss_pred EEEEecCC-----ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-------------CCeEEEEECCcc----
Q 006424 394 HFYKASGN-----DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV---- 451 (645)
Q Consensus 394 ~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-------------dg~I~iwd~~~~---- 451 (645)
.-|..... ........+..........-..+.|.|+| .++++.+. .|.|.-.+....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 66666542 11111111111111112334679999998 55555432 244444443311
Q ss_pred -----eeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 452 -----IHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 452 -----~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
...+. ..+. ....++|+|+|.+.++=
T Consensus 189 nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEe-eCCC-CcceEEECCCCCEEEEe
Confidence 11222 1222 34689999988766553
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.20 E-value=0.12 Score=52.08 Aligned_cols=142 Identities=12% Similarity=0.183 Sum_probs=92.4
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEEecCC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-------------
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR------------- 361 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~------------- 361 (645)
.++.+- ++.||.-++..+...+.+... ..+..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 444433 378888888754444444332 2578899999 999999886 4688998876221
Q ss_pred EEEee--c----cCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCc-eeeeEEeecc---ccccCCCCeEEEEEcC
Q 006424 362 VVDWA--D----VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGND-LKLEKVDFHD---RKKTSGNKITGIQFSR 428 (645)
Q Consensus 362 ~~~~~--~----~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~---~~~~~~~~i~~i~~s~ 428 (645)
+..+. . ...+|..+.|+| .+..|++-..|+.|++||+.... .+. .+.... ........|.+++|.+
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 11111 1 246799999999 45689999999999999998522 222 111000 0011226789999999
Q ss_pred CCCcEEEEEE--CCCeEEEE
Q 006424 429 DESQRIMITS--EDSKLRIL 446 (645)
Q Consensus 429 ~g~~~l~~~s--~dg~I~iw 446 (645)
++ -.|.+.+ ++|.|+-.
T Consensus 190 ~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TS-SCEEEEECTTSCEEEEE
T ss_pred CC-cEEEEEecCCCCCEEEE
Confidence 76 6666655 77888754
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.14 E-value=1.3 Score=44.66 Aligned_cols=192 Identities=10% Similarity=0.124 Sum_probs=120.3
Q ss_pred EcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-cEE-Eeecc----
Q 006424 295 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVV-DWADV---- 368 (645)
Q Consensus 295 ~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~-~~~~~---- 368 (645)
.+|...+++--...++.++|+++.+.++.+.....|.-=.|-. .+.|+..+ +..|+-|++.+. ... .+..|
T Consensus 73 MnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp ECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence 3555433332236899999999999999998777888888874 56666665 568999999652 222 23222
Q ss_pred CCCeEEEEEccCCCEEEEEe-------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEEC
Q 006424 369 RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSE 439 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~--~g~~~l~~~s~ 439 (645)
...|..-..+++.++++..+ -.|.+.+|..+...... +.++ ......+.+.. ....++..+..
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEEC
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEEe
Confidence 34577777888999877543 24678888887654322 1221 11222222211 11123444443
Q ss_pred C---CeEEEEECCcc---eeeE-----e----ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 440 D---SKLRILDGVDV---IHKF-----K----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 440 d---g~I~iwd~~~~---~~~~-----~----~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
. +.+.|.++... ...+ . ......-..++..|+.-..++.-+.-|.|++||+.++....
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 2 78899887532 1111 1 11224456788899998999999999999999999986433
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.08 E-value=1.1 Score=43.33 Aligned_cols=191 Identities=10% Similarity=0.133 Sum_probs=118.9
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-cEEE-eecc----C
Q 006424 296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVD-WADV----R 369 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~-~~~~----~ 369 (645)
+|...+++--...++.++|+++.+.++.+.....|.-=.|- +.+.|+..+ +..|+-|++.+. .... +..| .
T Consensus 75 nP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 75 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 151 (365)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTT
T ss_pred CCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhccc
Confidence 56553333333688999999999999999988888888887 466666665 468999999752 2222 2222 3
Q ss_pred CCeEEEEEccCCCEEEEEe-------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEEC-
Q 006424 370 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE- 439 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~s~- 439 (645)
..|..-..+++.++++..+ -.|.+.+|..+...... +.++ ......+.+. +....+++.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce----eeee----eeeeEEEecCCCCCCceEEEEEEec
Confidence 4577777788889777643 23678888887554322 2221 1111111111 111123333332
Q ss_pred --CCeEEEEECCcc---eeeE-----e----ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424 440 --DSKLRILDGVDV---IHKF-----K----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 497 (645)
Q Consensus 440 --dg~I~iwd~~~~---~~~~-----~----~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~ 497 (645)
.+.+.|.++... ...+ . ......-..++..|+.-..+..-+.-|.|++||+.++....
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 268888887432 1111 1 11124456788889888899999999999999999986433
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.99 E-value=1.1 Score=43.50 Aligned_cols=171 Identities=9% Similarity=0.007 Sum_probs=86.3
Q ss_pred EEEEecCCCeEEEEecCCCc--EEEEEEeeCCCCEEEEEeCC--------CcEEEEeCCCCcEEEeeccCCC--eEEEEE
Q 006424 310 VRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV--ISAICY 377 (645)
Q Consensus 310 I~iwd~~~~~~~~~~~~~~~--v~~l~~~p~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~--v~~l~~ 377 (645)
+.+||..+++-...-....+ -.+++.. ++.+++.|+.+ ..+.+||..+.+-........+ -.+++.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 77888887765332221111 1122222 56777777742 4589999988765554322211 122222
Q ss_pred ccCCCEEEEEec-C-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-----eEEEE
Q 006424 378 IPDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRIL 446 (645)
Q Consensus 378 sp~g~~l~~g~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-----~I~iw 446 (645)
.+++.++.|+. + ..+.+||..+....... ..... ......+.+ ++ .+++.|+.++ .+.+|
T Consensus 147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTA----RSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp -ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEE
T ss_pred -ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCc----hhceEEEEE--CC-EEEEEeccCCCCccceEEEE
Confidence 46667777765 2 46888998876543221 11111 111122222 44 6777776653 57888
Q ss_pred ECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc--------------cEEEEeCCCC
Q 006424 447 DGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC--------------RVYVWNYDEL 493 (645)
Q Consensus 447 d~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg--------------~I~iwd~~~~ 493 (645)
|..+..-.... .........+. -++++++.|+.++ .+.+||..+.
T Consensus 218 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 218 SITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 87643221111 11111112222 3667777777542 3666776654
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.99 E-value=0.96 Score=43.81 Aligned_cols=181 Identities=8% Similarity=0.043 Sum_probs=94.6
Q ss_pred eEEEEeCC----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEeec
Q 006424 300 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWAD 367 (645)
Q Consensus 300 ~l~s~s~d----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~ 367 (645)
.++.|+.+ ..+.+||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-.....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 55666654 568889998876543322 11111122222 67777887765 458999998877555432
Q ss_pred cCC--CeEEEEEccCCCEEEEEec---------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 368 VRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 368 ~~~--~v~~l~~sp~g~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
... .-.+++. -+++.++.|+. -..+.+||+.+....... ..... ...-..+.+ ++ .+++.
T Consensus 136 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~i~v~ 206 (306)
T 3ii7_A 136 MLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEA----RKNHGLVFV--KD-KIFAV 206 (306)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEE
T ss_pred CcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Cccch----hhcceEEEE--CC-EEEEE
Confidence 221 1112222 36666666653 345888998877543221 11111 111122222 43 56777
Q ss_pred EECC-----CeEEEEECCcceeeEe-e-cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424 437 TSED-----SKLRILDGVDVIHKFK-G-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 493 (645)
Q Consensus 437 ~s~d-----g~I~iwd~~~~~~~~~-~-~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~ 493 (645)
|+.+ ..+.+||..+..-... . .........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 6543 4688888764321111 1 111112222333 67788888754 46777887665
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.83 E-value=0.58 Score=45.55 Aligned_cols=173 Identities=11% Similarity=0.028 Sum_probs=87.8
Q ss_pred CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEeeccCCC--eEEEEEc
Q 006424 308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI 378 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--v~~l~~s 378 (645)
..+.+||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-........+ -.+++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV- 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-
Confidence 468889988776443321 11111122222 56777777643 3688999988775554322211 112222
Q ss_pred cCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEEC
Q 006424 379 PDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDG 448 (645)
Q Consensus 379 p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd~ 448 (645)
-+++.++.|+.+ ..+..||+.+....... ..... ......+.+ ++ .+++.|+.+ ..+.+||.
T Consensus 167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNTI----RSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCCc----cccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 266677777654 45888998776543221 11111 111222333 43 677777654 56889997
Q ss_pred CcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424 449 VDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 493 (645)
Q Consensus 449 ~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~ 493 (645)
.+..-.... .........+. -++++++.|+.+ ..+.+||..+.
T Consensus 239 ~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 239 ETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 643221111 11111112222 266777777644 34667776654
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.80 E-value=4.1 Score=47.45 Aligned_cols=198 Identities=10% Similarity=0.181 Sum_probs=116.7
Q ss_pred cEEEEecCCCeEEEEec--CCCcEEEEEEee---CCCCEEEEEe----------CCCcEEEEeCCCCcEEE--eeccCCC
Q 006424 309 TVRMWQVGCNQCLNVFD--HHNYVTCVQFNP---IDDNYFISGS----------IDGKVRIWGVCEKRVVD--WADVRDV 371 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p---~~~~~l~s~s----------~dg~i~vwd~~~~~~~~--~~~~~~~ 371 (645)
.|++.|..+.+.+..+. ....+.+++... ....++++|. ..|.|++|++..+++.. ....+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 47777877777766654 444566665432 1246888886 34789999987554433 4456788
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--
Q 006424 372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-- 449 (645)
Q Consensus 372 v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-- 449 (645)
+++++-- +| +|++| ....+++|++...+......... ..+..+.....+ .++++|..-..|.++..+
T Consensus 888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~-------~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHY-------NNIMALYLKTKG-DFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEEC-------CCSCEEEEEEET-TEEEEEESSBCEEEEEEETT
T ss_pred CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeecc-------ccEEEEEEeccC-CEEEEEEhhheEEEEEEEcC
Confidence 9998743 35 44444 35799999998654322111111 112222222233 588888887777765432
Q ss_pred -cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424 450 -DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 519 (645)
Q Consensus 450 -~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v 519 (645)
.....+........++++.|-.+ ..++.+..+|.+.+..++....... ..........|+-...++.+
T Consensus 957 ~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~-~~~~L~~~~~fhlG~~vt~~ 1025 (1158)
T 3ei3_A 957 EGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDE-ERQHLQEVGLFHLGEFVNVF 1025 (1158)
T ss_dssp TTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTT-GGGBEEEEEEEECSSCEEEE
T ss_pred CCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCcc-ccceeeeEEEEeCCCcEeeE
Confidence 23334444456678888888655 4777789999999999876422111 11222233356655555544
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.59 E-value=0.12 Score=46.97 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=64.5
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCc--------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 359 (645)
..+.+++|+|++.|++. .+|.+.-.+..+.....-+..... -.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36779999999877777 777766666544222111111112 47889998 8887777 569998887643
Q ss_pred CcEEEe--------eccCCCeEEEEEccCCCEEEEEecCCeEE
Q 006424 360 KRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCH 394 (645)
Q Consensus 360 ~~~~~~--------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~ 394 (645)
.....+ ...=..+..+.|.|+|.+.++. ||.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 221111 1111357899999999877776 77743
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.33 E-value=0.8 Score=53.32 Aligned_cols=204 Identities=13% Similarity=0.160 Sum_probs=116.4
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-C----CCcEEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006424 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVR 353 (645)
Q Consensus 287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~----~~~v~~l~~~p~~~~~l~s~s-------~dg~i~ 353 (645)
..+|..-.|-....|+-.+ +..|.-|++.. ..+++.|. | ...|..-..++ +.+.++..| ..|.+.
T Consensus 105 ~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 105 TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceee
Confidence 3567777887665444333 35799999963 34555553 2 34566667777 666655433 357899
Q ss_pred EEeCCCCcEEEeeccCCCeEEEEEcc---CCCEEEEEec---CCeEEEEEecCC-----ceeeeEEeeccccccCCCCeE
Q 006424 354 IWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKIT 422 (645)
Q Consensus 354 vwd~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~~g~~---dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~ 422 (645)
+|....+....+.+|......+.... ....++.+.. .+.+++.++... ..........-..........
T Consensus 183 LyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv 262 (1630)
T 1xi4_A 183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (1630)
T ss_pred eeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence 99988777666666655544443321 1223333322 378899888543 111111111111112234456
Q ss_pred EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++..++.. ..+..-+.-|.|.++|+.+....+...-...+|...+-+....=++.....|.|.--.++..
T Consensus 263 ~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 77778774 58888999999999999887777766545555544444333233333345555555555443
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.30 E-value=4.6 Score=44.78 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=107.9
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCC------CeEE--EEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------NQCL--NVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI 354 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~------~~~~--~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~v 354 (645)
..|.++....++.|..|+..+-+.++|..+ .... ..+. ....|.++...+ ++++.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 457888877778888888877788888652 1121 1221 223588888887 7777664444556889
Q ss_pred EeCCCCcEEEeecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424 355 WGVCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 430 (645)
Q Consensus 355 wd~~~~~~~~~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g 430 (645)
+|..+++...+... ...+.++....+|... .|+.. -+..|+..+...... ...+ .....|.++... +|
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~--~~~g---l~~~~i~~i~~~-~g 569 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHG-GVMRINPKDESQQSI--SFGS---FSNNEILSMTCV-KN 569 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETT-EEEEECC--CCCCBC--CCCC------CCEEEEEEE-TT
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecC-ceEEEecCCCceEEe--cccC---CCccceEEEEEC-CC
Confidence 99988776664321 2457788877777655 45554 477788765543211 1111 112557777764 54
Q ss_pred CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424 431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491 (645)
Q Consensus 431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~ 491 (645)
.|..++..| +..+|..+........ ....+....+......|..|+.+|.++ ++.+
T Consensus 570 --~lWi~t~~G-l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 570 --SIWVSTTNG-LWIIDRKTMDARQQNM-TNKRFTSLLFDPKEDCVYLGGADGFGI-SHSN 625 (758)
T ss_dssp --EEEEEESSC-EEEEETTTCCEEEC---CCCCCSEEEEETTTTEEEEECBSEEEE-EEC-
T ss_pred --CEEEECCCC-eEEEcCCCceeEEecC-CCCceeeeEEECCCCcEEEecCCceEE-EChh
Confidence 455556555 6777765432221111 122333444544344566677788554 4554
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.20 E-value=2.7 Score=41.49 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=123.2
Q ss_pred cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 275 (645)
Q Consensus 196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (645)
+...-..-+.|+|.|||+++++--..|.|++++..++.......
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~------------------------------------ 70 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE------------------------------------ 70 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE------------------------------------
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc------------------------------------
Confidence 33344567899999999987776668999888755432110000
Q ss_pred cCCCceeeccCccCeEEEEEcCC----CeEEEE---eCCCcEEEEecCCC----------eEE-EEec--CCCcEEEEEE
Q 006424 276 EESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQF 335 (645)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~~----~~l~s~---s~dg~I~iwd~~~~----------~~~-~~~~--~~~~v~~l~~ 335 (645)
. -..+.........|+++|+ +.|+.. ..++.|.-|.+..+ +.+ ..+. .......|.|
T Consensus 71 --~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~f 147 (347)
T 3das_A 71 --V-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAF 147 (347)
T ss_dssp --C-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEE
T ss_pred --c-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccC
Confidence 0 0011223456788999985 544432 23455665655431 111 1121 1223467899
Q ss_pred eeCCCCEEEEEeC-------------CCcEEEEeCCCC---------cEEEeeccCCCeEEEEEccCCCEEEEEe-cCCe
Q 006424 336 NPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-ITGT 392 (645)
Q Consensus 336 ~p~~~~~l~s~s~-------------dg~i~vwd~~~~---------~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~ 392 (645)
.| ++.++++.+. .|.|.-.+.... ..+...++. ....++|+|+|.+.++-. .++.
T Consensus 148 gp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~ 225 (347)
T 3das_A 148 GP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTW 225 (347)
T ss_dssp CT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSC
T ss_pred CC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCC
Confidence 99 8887777542 244554554432 112222333 356789999876555432 2222
Q ss_pred EEEEEecCCce---eeeEE-----eeccc---cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee----eEee
Q 006424 393 CHFYKASGNDL---KLEKV-----DFHDR---KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKG 457 (645)
Q Consensus 393 i~iwd~~~~~~---~~~~~-----~~~~~---~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~ 457 (645)
-.|.-+..... +...- .+... ...+......+.|.. | .+++..-..+.|....+..... ....
T Consensus 226 deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l 303 (347)
T 3das_A 226 DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFL 303 (347)
T ss_dssp EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEES
T ss_pred ceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEee
Confidence 22222221111 00000 00000 000012456777764 3 5666666666666655432211 1111
Q ss_pred cCCCCCeEEEEEecCCCEEEEEe
Q 006424 458 LPKSGSQMSASFTTTGKHIISIG 480 (645)
Q Consensus 458 ~~~~~~i~~v~~sp~~~~l~t~s 480 (645)
....+.+..+...|||.++++.+
T Consensus 304 ~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 304 EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCccEEEECCCCcEEEEEc
Confidence 22346889999999998777654
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.20 E-value=1.1 Score=46.43 Aligned_cols=109 Identities=10% Similarity=0.106 Sum_probs=61.9
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---------cCCCeEEEEEccC---CCEEEEEec------
Q 006424 328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIPD---GKGFIVGSI------ 389 (645)
Q Consensus 328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~v~~l~~sp~---g~~l~~g~~------ 389 (645)
...+.++|.| +++++++-...+.|++++..++....+.. .......|+|+|+ +..|++...
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3567999999 88877665443578888876554433211 2456779999996 556665543
Q ss_pred -------CCeEEEEEecCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424 390 -------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438 (645)
Q Consensus 390 -------dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s 438 (645)
...|.-|+........ ....+.............+.|.|+| .++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 2356666654332111 1111111111112457899999998 4555433
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.94 E-value=4 Score=42.10 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.2
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 006424 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 231 (645)
Q Consensus 200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~ 231 (645)
-..-+.|+|.|+|+++++-...+.|++++..+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 34578999999999777755445687776543
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.81 E-value=2.7 Score=40.84 Aligned_cols=130 Identities=8% Similarity=0.069 Sum_probs=67.8
Q ss_pred EEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-------CcEEEEeCCCCcEEEeeccCCCe--EEEEEc
Q 006424 310 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDVI--SAICYI 378 (645)
Q Consensus 310 I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~v--~~l~~s 378 (645)
+.+||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-........+. .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788887776543322 11111122222 57777787754 24888999887755543322211 12222
Q ss_pred cCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEE
Q 006424 379 PDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD 447 (645)
Q Consensus 379 p~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd 447 (645)
.+++.++.|+. -..+.+||+.+....... ..... ......+.+ ++ .+++.|+.+ ..+.+||
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTP----RSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCC----cccceEEEE--CC-EEEEEcCcCCCCccceEEEEE
Confidence 46667777654 235889998876553221 11111 111122222 33 677777643 3577888
Q ss_pred CCc
Q 006424 448 GVD 450 (645)
Q Consensus 448 ~~~ 450 (645)
..+
T Consensus 229 ~~~ 231 (318)
T 2woz_A 229 LKT 231 (318)
T ss_dssp TTT
T ss_pred CCC
Confidence 663
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.75 E-value=2.1 Score=42.15 Aligned_cols=92 Identities=7% Similarity=-0.047 Sum_probs=55.1
Q ss_pred eCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEee--------CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC
Q 006424 305 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP--------IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371 (645)
Q Consensus 305 s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p--------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 371 (645)
+.||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|.+...|+++|+.+........
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 589999999988886554443 2222221 1000 0356788999999999999999998875544322
Q ss_pred e--------EEEEEc-----cCCCEEEEEecCCeEEEEE
Q 006424 372 I--------SAICYI-----PDGKGFIVGSITGTCHFYK 397 (645)
Q Consensus 372 v--------~~l~~s-----p~g~~l~~g~~dg~i~iwd 397 (645)
. .|.... ..+..++.+..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 1 011110 1235677777776666666
No 331
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.40 E-value=10 Score=44.25 Aligned_cols=222 Identities=9% Similarity=0.051 Sum_probs=116.5
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEE--EecCCCcEEEEEEeeCC-----CCEEEEEeC-CCcEEEEeCCC
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE 359 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~~p~~-----~~~l~s~s~-dg~i~vwd~~~ 359 (645)
..|...+.+. .+++.++ ++.+.++.++.++... .......|.|+++.|.. .+++++|.. |++++++++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3566666543 4555554 6788888887664332 23356789999998622 368999997 99999999988
Q ss_pred CcEEEeecc--CCCeEEEEEcc--CCCEEEEEecCCeEEEEEecC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 360 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 360 ~~~~~~~~~--~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
.+.+..... .....++.+.. ...+|.+|-.||.+.-+.+.. +..........+. .++.=..+...|...
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTN 666 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCcee
Confidence 666654333 23455555443 335788999999987776653 2222222222221 234333344344334
Q ss_pred EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC--CCEEEEEeCCccEEEEeCCCCCcC--CCcccCCcceeee
Q 006424 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEH 509 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~--~~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~ 509 (645)
+++.+ +....++..... ..+.......--....|+.. ..-++..+ ++.++|..++..... ...........+.
T Consensus 667 V~a~s-~rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~ 743 (1158)
T 3ei3_A 667 VFACS-DRPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKIC 743 (1158)
T ss_dssp EEEES-SSCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEE
T ss_pred EEEEC-CCCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEE
Confidence 44444 333334433322 22222212212233345432 23344333 456999888654211 1111222334445
Q ss_pred eecCCcEEEE
Q 006424 510 FFSEGVSVAV 519 (645)
Q Consensus 510 ~~~~g~~~~v 519 (645)
++++....++
T Consensus 744 y~~~~~~~~v 753 (1158)
T 3ei3_A 744 YQEVSQCFGV 753 (1158)
T ss_dssp EEGGGTEEEE
T ss_pred EcCCCCEEEE
Confidence 5655554444
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.34 E-value=1.1 Score=44.43 Aligned_cols=88 Identities=8% Similarity=0.109 Sum_probs=49.3
Q ss_pred CcEEEEecCCCeEEEEecCC-C-c-EEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 006424 308 KTVRMWQVGCNQCLNVFDHH-N-Y-VTCVQFNPIDDNYFISGSID----------------------------------- 349 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~-~-~-v~~l~~~p~~~~~l~s~s~d----------------------------------- 349 (645)
..+.+||..+.+-...-... . . -.++.. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999877644332211 1 1 112222 3 77888888864
Q ss_pred ----CcEEEEeCCCCcEEEeeccCC--Ce-EEEEEccCCCEEEEEec------CCeEEEEEe
Q 006424 350 ----GKVRIWGVCEKRVVDWADVRD--VI-SAICYIPDGKGFIVGSI------TGTCHFYKA 398 (645)
Q Consensus 350 ----g~i~vwd~~~~~~~~~~~~~~--~v-~~l~~sp~g~~l~~g~~------dg~i~iwd~ 398 (645)
..+.+||..+.+-........ .- .+++. -+++.++.|+. ...+..||+
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 478999998876554432221 11 23333 25666666653 345677776
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.22 E-value=4.3 Score=39.26 Aligned_cols=160 Identities=7% Similarity=-0.013 Sum_probs=88.2
Q ss_pred CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCE
Q 006424 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 383 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~ 383 (645)
..|+..+++.++........ +..|++ +++.|+-.. .+..|+..++.+.....+..+.. ..++++++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP----CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC----EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecCC----ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 45777777655433322221 226777 777777665 34456666777655555554433 346788888
Q ss_pred EEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEeecCC
Q 006424 384 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPK 460 (645)
Q Consensus 384 l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~ 460 (645)
|+-.+. ...|...++.+.... .+ ..+ ... ..+.|++ .+|+-...+ ..|..-++....... . .
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~~-------~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~~~-L--t 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEA--LF-YDC-------NCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNPNPVV-L--T 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEE--EE-ECS-------CEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSCCCEE-C--S
T ss_pred EEEEeCCCceEEEEECCCCCEE--EE-eCC-------Ccc-ceeeecC-CEEEEEEcCCCcEEEEEECCCCCeEE-E--e
Confidence 886655 567777777665432 22 121 122 2355887 455544433 356555554222111 1 1
Q ss_pred CCCeEEEEEecCCCEEEEEeC--CccEEEEeCCCC
Q 006424 461 SGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL 493 (645)
Q Consensus 461 ~~~i~~v~~sp~~~~l~t~s~--dg~I~iwd~~~~ 493 (645)
...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 224 ~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 224 EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 2233 347889998887643 356666677654
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.17 E-value=1.6 Score=43.37 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=77.4
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-e-------eccCCCeEEEEEccC---CCEEEEEec--------
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPD---GKGFIVGSI-------- 389 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~-------~~~~~~v~~l~~sp~---g~~l~~g~~-------- 389 (645)
..+.++|.| +++.++++...|.|++++... .... + .........++++|+ +..|++...
T Consensus 19 ~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 468899999 888344556679999998543 2211 1 112345789999996 555555532
Q ss_pred CCeEEEEEecCCc--eeeeEEeecccc--ccCCCCeEEEEEcCCCCcEEEEEEC-------------CCeEEEEECCcc-
Q 006424 390 TGTCHFYKASGND--LKLEKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV- 451 (645)
Q Consensus 390 dg~i~iwd~~~~~--~~~~~~~~~~~~--~~~~~~i~~i~~s~~g~~~l~~~s~-------------dg~I~iwd~~~~- 451 (645)
...|..|+..... .......+.... .........+.|.|+| .++++.+. .|.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666665432 111111111111 0111223579999998 55444433 245666664321
Q ss_pred -------------eeeEeecCCCCCeEEEEEec-CCCEEEE
Q 006424 452 -------------IHKFKGLPKSGSQMSASFTT-TGKHIIS 478 (645)
Q Consensus 452 -------------~~~~~~~~~~~~i~~v~~sp-~~~~l~t 478 (645)
...+.. .......++|+| +|++.++
T Consensus 176 p~~npf~~~~~~~~~i~a~--G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSY--GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEE--CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEEEE--cCcCccceEEECCCCCEEEE
Confidence 112221 123467899999 5554443
No 335
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.10 E-value=4.2 Score=38.97 Aligned_cols=174 Identities=10% Similarity=0.025 Sum_probs=90.9
Q ss_pred CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCc---EEEeeccCC--CeEEE
Q 006424 308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADVRD--VISAI 375 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~---~~~~~~~~~--~v~~l 375 (645)
..+.+||+.+++-...-. ....-.+++. . ++.+++.|+.+ ..+.+||..+.+ -........ .-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368889988776443222 1111112222 2 67777877755 469999998876 444322111 11122
Q ss_pred EEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEE
Q 006424 376 CYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRI 445 (645)
Q Consensus 376 ~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~i 445 (645)
+. .+++.++.|+.+ ..+.+||+.+....... ...... .....+.+ ++ .+++.|+.+ ..+.+
T Consensus 109 ~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r----~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 109 TT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAR----EGAGLVVA--SG-VIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCC----BSCEEEEE--TT-EEEEECCBCSSCBCCCEEE
T ss_pred EE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCc----ccceEEEE--CC-EEEEECCCCCCcccceEEE
Confidence 22 256777777654 36888898776653321 111111 11122222 44 677777654 46888
Q ss_pred EECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424 446 LDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 494 (645)
Q Consensus 446 wd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~ 494 (645)
||..+..-.... .........+. -+++.++.|+.+ ..+.+||..+..
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 997643222111 11111112222 367777777764 468899987764
No 336
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.85 E-value=3.6 Score=39.55 Aligned_cols=174 Identities=12% Similarity=0.123 Sum_probs=89.0
Q ss_pred CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEeeccCCC--eEEEEEc
Q 006424 308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI 378 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--v~~l~~s 378 (645)
..+..||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-........+ -.+++.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 357888888776433321 11111122222 57777777754 3588999988775554332211 122222
Q ss_pred cCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-------CeEEEE
Q 006424 379 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL 446 (645)
Q Consensus 379 p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-------g~I~iw 446 (645)
-+++.++.|+.++ .+.+||+.+....... ..... ......+.+ ++ .+++.|+.+ ..+.+|
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTR----RSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCc----ccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEE
Confidence 2667777777653 5778888766543221 11111 111122222 33 566666542 458889
Q ss_pred ECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424 447 DGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 494 (645)
Q Consensus 447 d~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~ 494 (645)
|..+..-.... .........+. -++++++.|+.+ ..+.+||..+..
T Consensus 179 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 179 NATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred eCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 87643221111 11111112222 367777787754 368889987753
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.83 E-value=3.2 Score=48.48 Aligned_cols=192 Identities=10% Similarity=0.126 Sum_probs=115.1
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEE-eecc----C
Q 006424 296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVD-WADV----R 369 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~-~~~~----~ 369 (645)
+|...+++--...++.|+|+++...+..+....+|.-=.|- +.+.|+..+ +..|+-|++.+.. +.. +..| .
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 45544444444689999999999999998887788877887 456666555 4679999996522 221 2222 3
Q ss_pred CCeEEEEEccCCCEEEEEe-------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEEC-
Q 006424 370 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE- 439 (645)
Q Consensus 370 ~~v~~l~~sp~g~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~s~- 439 (645)
..|..-..+++.++++..+ -.|.+.+|......... +.++ ......+... +..+.++..+..
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence 5577777788888877543 34788888886544321 1111 1111111111 111122222222
Q ss_pred --CCeEEEEECCcc---eeeEee---------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424 440 --DSKLRILDGVDV---IHKFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 498 (645)
Q Consensus 440 --dg~I~iwd~~~~---~~~~~~---------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~ 498 (645)
.+.+.|.++... ...+.. .....-..++..|+.-..+..-+.-|.|+++|+.++.....
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 368888886432 111110 11123345677788888888889999999999999864443
No 338
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.83 E-value=3.6 Score=39.56 Aligned_cols=183 Identities=9% Similarity=0.042 Sum_probs=94.3
Q ss_pred eEEEEeC--CCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCcEEEeeccCCC
Q 006424 300 YLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVRDV 371 (645)
Q Consensus 300 ~l~s~s~--dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~ 371 (645)
.++.|+. ...+.+||..+++-...-. ....-.++.. - ++.+++.|+.+ ..+.+||..+.+-........+
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 3578899988876543321 1111112222 2 67777888755 5688999988775554322211
Q ss_pred --eEEEEEccCCCEEEEEecC------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC----
Q 006424 372 --ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---- 439 (645)
Q Consensus 372 --v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~---- 439 (645)
-.+++ .-+++.++.|+.+ ..+.+||..+...... -..... ......+.+ ++ .+++.|+.
T Consensus 92 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~ 162 (306)
T 3ii7_A 92 RDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQ----RCSHGMVEA--NG-LIYVCGGSLGNN 162 (306)
T ss_dssp CBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSC----CBSCEEEEE--TT-EEEEECCEESCT
T ss_pred ccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCC----cceeEEEEE--CC-EEEEECCCCCCC
Confidence 11222 2266777777755 4688899887654322 111111 111122222 43 56666653
Q ss_pred -----CCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424 440 -----DSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 494 (645)
Q Consensus 440 -----dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~ 494 (645)
-..+.+||..+..-.... ......-.+++. -++++++.|+.+ ..+.+||..+..
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 345888987643221111 111111112222 266777777653 468889987764
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.31 Score=48.02 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=68.7
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEe--eCCCCEEEEE-eCCCcEEEEeCCCCcEEEeeccCCCe
Q 006424 298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVI 372 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~--p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~v 372 (645)
++.++.++.||.|.-.|..+|+..-.+... .++....-. +.++..++.. +.||.|+.++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 368999999999999999999999888644 222221100 1022333333 57999999999887544321111111
Q ss_pred E--EEEEc-----------cCCCEEEEEecCCeEEEEEecCCceee
Q 006424 373 S--AICYI-----------PDGKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 373 ~--~l~~s-----------p~g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
. -+... ..+..+++|+.+|.+...|+.+++...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 0 01110 145578899999999999999888653
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.03 E-value=13 Score=38.79 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred eEEEEe-CCCcEEEEecCCCeEEEEec--CCCcEEEEEEe--eCCCCEEEEEeC-------CCcE---------E---EE
Q 006424 300 YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV---------R---IW 355 (645)
Q Consensus 300 ~l~s~s-~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~--p~~~~~l~s~s~-------dg~i---------~---vw 355 (645)
+|+.-. .+..|-.-+++..++-+.+. ....+.++.|. | +..+++.++. ||.. . ..
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i 222 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI 222 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence 455544 45677788888887766554 55678888886 5 6667777764 2321 0 11
Q ss_pred eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---------------eEEEEEec-------CCcee------eeE
Q 006424 356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKAS-------GNDLK------LEK 407 (645)
Q Consensus 356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---------------~i~iwd~~-------~~~~~------~~~ 407 (645)
|..+.++.......+....+...++|++.++.+.+. .+.++++. .++.. ...
T Consensus 223 D~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 223 DAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred cCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222222211111122333455567777777765332 35556542 01000 001
Q ss_pred Eeecccc--c-------cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----------e-EeecCCCCCeEE
Q 006424 408 VDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------K-FKGLPKSGSQMS 466 (645)
Q Consensus 408 ~~~~~~~--~-------~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----------~-~~~~~~~~~i~~ 466 (645)
+...... . ........+..+|||...++.+--+.++.++|...... . .....-......
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 1110000 0 01133446789999965556666689999999763211 1 111123445678
Q ss_pred EEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 467 ASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 467 v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+|+++|.-..|---|..|.-|++...
T Consensus 383 t~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEECCCCceEeeeeecceEEEEeccHH
Confidence 899999955555558999999999753
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.80 E-value=4.7 Score=38.86 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=89.1
Q ss_pred CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeC----C-----CcEEEEeCCCCcEEEeeccC---CCeE
Q 006424 308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVDWADVR---DVIS 373 (645)
Q Consensus 308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~----d-----g~i~vwd~~~~~~~~~~~~~---~~v~ 373 (645)
..+.+||..+++-...-. ....-.+++.. ++.+++.|+. + ..+.+||..+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 357888887766443321 11111122222 5667777765 2 46889999887755543221 1122
Q ss_pred EEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeE
Q 006424 374 AICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKL 443 (645)
Q Consensus 374 ~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I 443 (645)
.+. -+++.++.|+.+ ..+.+||..+....... ..... ......+.+ ++ .+++.|+.+ ..+
T Consensus 117 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~ 186 (308)
T 1zgk_A 117 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTR----RIGVGVAVL--NR-LLYAVGGFDGTNRLNSA 186 (308)
T ss_dssp EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSCBCCCE
T ss_pred EEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCcc----ccceEEEEE--CC-EEEEEeCCCCCCcCceE
Confidence 222 266677776643 36788888776543221 11111 111122223 43 677777654 468
Q ss_pred EEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424 444 RILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 494 (645)
Q Consensus 444 ~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~ 494 (645)
.+||..+..-.... ......-..+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 88887643221111 111111222222 67777777754 568999988764
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.79 E-value=12 Score=37.60 Aligned_cols=158 Identities=10% Similarity=-0.019 Sum_probs=79.1
Q ss_pred cCeEEEEEcC--CCeEEEEeCCC----cEEEEecCCCeEEEEec---------------CCCcEEEEEEeeCC-CCEEEE
Q 006424 288 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS 345 (645)
Q Consensus 288 ~~V~~l~~s~--~~~l~s~s~dg----~I~iwd~~~~~~~~~~~---------------~~~~v~~l~~~p~~-~~~l~s 345 (645)
..|.+|++.| .+.+..++..| .|...+ +.++.-..+. ....|.++++.|.+ .+.+..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688999987 45666666555 444332 2232211111 11257788998744 566666
Q ss_pred EeCCCcEEEEeCCCCcEEEeec-------------------cCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceee
Q 006424 346 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL 405 (645)
Q Consensus 346 ~s~dg~i~vwd~~~~~~~~~~~-------------------~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~ 405 (645)
++..+.|...+-....-..... ....+.+|.++|. ...++++..++.+...+-.......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence 6666666655433333222211 1235788999883 4556666655554443222222211
Q ss_pred eEEeecccc-c----cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 406 EKVDFHDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 406 ~~~~~~~~~-~----~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
......... . .....+.++.+.|.....++++...+ |...+
T Consensus 214 ~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 214 LNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 100000000 0 00134889999987445677776555 44443
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.70 E-value=9.3 Score=36.36 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=95.4
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEee
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 366 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~ 366 (645)
.|..++......++. . ||.|..|-.... +.-........|..++... .+.+.-. ||.|+.|-... +++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566666554444444 4 899999965432 2111111234677777653 3444445 99999997644 3221112
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.....|..++...+ ..++-. ||.++.|-......... +. .....|..++.-.. ..++. .||.|+.|
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~----p~---~~~~~v~~i~~G~~--hs~al--~~G~v~~w 203 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV----PA---EAQSGVDDVAGGIF--HSLAL--KDGKVIAW 203 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC----CG---GGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC----ce---ecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence 23345666655432 233333 79998887654332110 10 01256777777655 34444 59999999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
-....-+.-........|..++..... .++. . ||.|+.|-.+..
T Consensus 204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp ECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred ECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 744211110011122356666654433 3333 3 999999976543
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.24 E-value=9.9 Score=41.62 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=61.3
Q ss_pred eEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEEeec--
Q 006424 300 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWAD-- 367 (645)
Q Consensus 300 ~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~-- 367 (645)
.++.|+.+ ..+.+||..+.+-...-. ....-.+++... ++.+++.|+.++ .+.+||..+..-.....
T Consensus 454 lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp EEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred EEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence 55666643 357888988765443322 111112233323 678888888655 69999998877555432
Q ss_pred ----cCCCeEEEEEccC-CCEEEEEec--C-----CeEEEEEecCCc
Q 006424 368 ----VRDVISAICYIPD-GKGFIVGSI--T-----GTCHFYKASGND 402 (645)
Q Consensus 368 ----~~~~v~~l~~sp~-g~~l~~g~~--d-----g~i~iwd~~~~~ 402 (645)
......++.+..+ ++.++.|+. + +.+..||+.+..
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1222334555555 667777765 2 468899998877
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.72 E-value=12 Score=35.94 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=78.8
Q ss_pred EEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe--cCCe--EE
Q 006424 333 VQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGT--CH 394 (645)
Q Consensus 333 l~~~p~~~~~l~s~s~d--------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~--~dg~--i~ 394 (645)
--+++ +++.|+.+... ..|+..++.+.+...+.... +..|+++++.|+-.. .++. |.
T Consensus 58 ~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 34567 77777666543 35777788776654443322 236788899888776 3444 44
Q ss_pred EEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC
Q 006424 395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 474 (645)
Q Consensus 395 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~ 474 (645)
..++.+.. ...+.-. .+ ..+++++..+..+......|.+.++.......... +... ..++|++.
T Consensus 133 ~~~~dGs~--~~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~ 196 (302)
T 3s25_A 133 RIRIDGEE--KKKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT 196 (302)
T ss_dssp EEETTSCC--CEEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT
T ss_pred EEECCCCC--eEEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC
Confidence 44444332 2222211 11 34567774444454446788888876433222221 2222 34669999
Q ss_pred EEEEEeCC--ccEEEEeCCCCC
Q 006424 475 HIISIGDD--CRVYVWNYDELC 494 (645)
Q Consensus 475 ~l~t~s~d--g~I~iwd~~~~~ 494 (645)
+|+-...+ ..|..-+++...
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEEEcCCCcEEEEEECCCCC
Confidence 98877644 356666676654
No 346
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.52 E-value=15 Score=35.22 Aligned_cols=181 Identities=9% Similarity=0.083 Sum_probs=92.9
Q ss_pred eEEEEeCCCcEEEEecCCCeEEEE-ecCC-CcEEEEEEeeCCCCEEEEEeC----C-------CcEEEEeCCCCcEEEee
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA 366 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~~-~~~~-~~v~~l~~~p~~~~~l~s~s~----d-------g~i~vwd~~~~~~~~~~ 366 (645)
.++.|+ ..+.+||..+++-... +... .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 5789999988875431 1111 1122222233 6788888873 1 12788899887765543
Q ss_pred ccCCCe--EEEEEccCCCEEEEEecC--------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424 367 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 436 (645)
Q Consensus 367 ~~~~~v--~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~ 436 (645)
....+- .+++. -+++.++.|+.+ ..+.+||..+....... ..... ..... ++. -++ .+++.
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~-~~~-~~~-~iyv~ 154 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYV----VYGHT-VLS-HMD-LVYVI 154 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSC----CBSCE-EEE-ETT-EEEEE
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCc----cccee-EEE-ECC-EEEEE
Confidence 322211 12222 256666666632 45888998876543211 11111 11111 222 233 56777
Q ss_pred EEC-C-----CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCCC
Q 006424 437 TSE-D-----SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC 494 (645)
Q Consensus 437 ~s~-d-----g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~~ 494 (645)
|+. + ..+.+||..+..-.... ......-..+. -+++.++.|+.++ .+.+||..+..
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 765 2 46888997643211111 11111112222 3677888887654 58888887763
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.02 E-value=12 Score=41.06 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=99.4
Q ss_pred CeEEEEeCC----CcEEEEecCCCeEEEEe-c-------CCC-cEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 006424 299 NYLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCE 359 (645)
Q Consensus 299 ~~l~s~s~d----g~I~iwd~~~~~~~~~~-~-------~~~-~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~ 359 (645)
..++.|+.+ ..+.+||..+++....- . ... .-..+.+.. ++.+++.|+.+ ..+.+||..+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 356666643 46888998877544332 1 111 122233321 45677777654 3588999988
Q ss_pred CcEEEeeccCC--CeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 360 KRVVDWADVRD--VISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 360 ~~~~~~~~~~~--~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
.+-........ .-.+++...+++.++.|+.++ .+.+||..+........ .+...........+.+..+...+++
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~--~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP--KDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC--SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC--CCCCCCcccceeEEEEeCCCCEEEE
Confidence 76555432221 222333334788888887655 68899988776532211 0001111122233455544226777
Q ss_pred EEEC--C-----CeEEEEECCcce-------eeEee--cCCCCCeEEEEEecCCCEEEEEeCC--------ccEEEEeCC
Q 006424 436 ITSE--D-----SKLRILDGVDVI-------HKFKG--LPKSGSQMSASFTTTGKHIISIGDD--------CRVYVWNYD 491 (645)
Q Consensus 436 ~~s~--d-----g~I~iwd~~~~~-------~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d--------g~I~iwd~~ 491 (645)
.|+. + +.+.+||..+.. ..... ....... +++...++++++.||.+ ..|.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 468889866433 11111 0111122 22333336777777743 457888877
Q ss_pred CC
Q 006424 492 EL 493 (645)
Q Consensus 492 ~~ 493 (645)
+.
T Consensus 635 t~ 636 (695)
T 2zwa_A 635 SE 636 (695)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.21 E-value=25 Score=35.00 Aligned_cols=108 Identities=8% Similarity=-0.057 Sum_probs=57.4
Q ss_pred cCeEEEEEcC---CCeEEEEeCCCcEEEEecCCCeEEEEec--------------------CCCcEEEEEEeeCCCCEEE
Q 006424 288 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI 344 (645)
Q Consensus 288 ~~V~~l~~s~---~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------------------~~~~v~~l~~~p~~~~~l~ 344 (645)
..|.++++.| .+.++.++..+.|...+-. ++.-..+. ....+.++.++|.+.+.++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3577888875 3566666666655544322 22211111 1235788999874455555
Q ss_pred EEeCCCcEEEEeCCCCcEEEeec-c------------CCCeEEEEEccC-CCEEEEEecCCeEEEEE
Q 006424 345 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYK 397 (645)
Q Consensus 345 s~s~dg~i~vwd~~~~~~~~~~~-~------------~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd 397 (645)
.+..++.|...+-....-..... . ...+.++.++|. ...++++...+ |...+
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 55545555544332222222211 0 134889999985 45677776544 44433
No 349
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.89 E-value=22 Score=34.05 Aligned_cols=173 Identities=10% Similarity=0.068 Sum_probs=87.1
Q ss_pred cEEEEecCCCeEEEE-ec--CCCcEEEEEEeeCCCCEEEEEeC----CC-------cEEEEeCCCCcEEEeeccCCC--e
Q 006424 309 TVRMWQVGCNQCLNV-FD--HHNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I 372 (645)
Q Consensus 309 ~I~iwd~~~~~~~~~-~~--~~~~v~~l~~~p~~~~~l~s~s~----dg-------~i~vwd~~~~~~~~~~~~~~~--v 372 (645)
.+..||..+++-... .. ....-.+++ .. ++.+++.|+. ++ .+..||..+.+-........+ -
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 378899988775442 11 111222222 33 6778888873 12 177889888776554322211 1
Q ss_pred EEEEEccCCCEEEEEecC-------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC------
Q 006424 373 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------ 439 (645)
Q Consensus 373 ~~l~~sp~g~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~------ 439 (645)
.+++. -+++.++.|+.+ ..+.+||..+....... ...... ..-. ++. .++ .+++.|+.
T Consensus 103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~~-~~~-~~~-~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGHN-VIS-HNG-MIYCLGGKTDDKKC 173 (318)
T ss_dssp CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESCE-EEE-ETT-EEEEECCEESSSCB
T ss_pred cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----cccE-EEE-ECC-EEEEEcCCCCCCCc
Confidence 22222 256777777654 25778888766543221 111111 1111 222 344 56666654
Q ss_pred CCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424 440 DSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 494 (645)
Q Consensus 440 dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~ 494 (645)
-..+.+||..+..-.... .........+. -+++.++.|+.+ ..+.+||..+..
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 245889997643221111 11111112222 367777777643 357788887764
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.07 E-value=11 Score=38.71 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred CCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccc-----cCCCCeEEEEEcCC----CCcEEEEEEC
Q 006424 370 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD----ESQRIMITSE 439 (645)
Q Consensus 370 ~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~s~~----g~~~l~~~s~ 439 (645)
.....|+|.|+|. .|+++...|.|++++............+..... ........|+|+|+ + .++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567899999996 577778899999997543211111111111110 11356789999996 4 34443332
Q ss_pred --C----------CeEEEEECCc----------ceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC
Q 006424 440 --D----------SKLRILDGVD----------VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD 482 (645)
Q Consensus 440 --d----------g~I~iwd~~~----------~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d 482 (645)
+ ..|.-|.... ....+.. .........|.|.|||.+.++.++.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1333344321 1122221 1223456889999999888877654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.72 E-value=2.7 Score=43.81 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=65.4
Q ss_pred cEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCcee-------eeEEeeccccccC
Q 006424 351 KVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK-------LEKVDFHDRKKTS 417 (645)
Q Consensus 351 ~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~ 417 (645)
.|.+.|.+. .....+.........+.++|||+++++++. +.++.++|+...... .... ... ....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-~~a-e~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-IVG-EPEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-EEE-CCBC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-eEe-eccC
Confidence 478888776 235556666777888999999999888764 779999998732110 0000 000 0112
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD 450 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~ 450 (645)
+-.....+|.++| ....+..-|..|.-|++..
T Consensus 377 GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 3556788999998 6666667899999999654
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.82 E-value=43 Score=32.50 Aligned_cols=148 Identities=9% Similarity=0.100 Sum_probs=88.0
Q ss_pred CCeEEEEeCCCcEEEEecCCC-------eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCcE------
Q 006424 298 SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRV------ 362 (645)
Q Consensus 298 ~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~------ 362 (645)
+..++.++.+|.|+--.+..- .....+...+.+..+.... ....++..+..|.+..+... .-..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 358999999999999876432 2222233445566555555 55677778889998888766 2111
Q ss_pred -EE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424 363 -VD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIM 435 (645)
Q Consensus 363 -~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~ 435 (645)
.. -......|.++...+++.+++..+..|.++.-.+........ ...+. .....+.+..+....++ ..++
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~--l~~~~d~lv~~~~~~~~-~~i~ 264 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM--YDRRRGRLVGALIVDDD-SELY 264 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC--CCTTTCSEEEEEEECTT-CEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE--ecCCCCeEEEEEEeCCC-ccEE
Confidence 11 122345677776666677899999999998887654332111 11111 00112345554444333 4677
Q ss_pred EEECCCeEEEEECC
Q 006424 436 ITSEDSKLRILDGV 449 (645)
Q Consensus 436 ~~s~dg~I~iwd~~ 449 (645)
..+.+|.+.-++..
T Consensus 265 l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEGGGCEEEEEGG
T ss_pred EEcCCCeEEEEehh
Confidence 77778877777643
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.51 E-value=48 Score=32.89 Aligned_cols=167 Identities=5% Similarity=0.038 Sum_probs=97.9
Q ss_pred cEEEEecCCC--eEEEEec-------CCCcEEEEEEeeC--C----CCEEEEEe-CCCcEEEEeCCCCcEEEeec-----
Q 006424 309 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFNPI--D----DNYFISGS-IDGKVRIWGVCEKRVVDWAD----- 367 (645)
Q Consensus 309 ~I~iwd~~~~--~~~~~~~-------~~~~v~~l~~~p~--~----~~~l~s~s-~dg~i~vwd~~~~~~~~~~~----- 367 (645)
.|.+||+.++ +.++.+. ..+.+..+.+... . +.+++.+. ..+.|.|+|+.+++..++..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5888999998 8888774 2346788888711 1 33444443 46779999999887655431
Q ss_pred --------------cCCCeEEEEEccC----CCEEEEEecCCeEEEEEec-----CCceeeeEEeeccccccCCCCeEEE
Q 006424 368 --------------VRDVISAICYIPD----GKGFIVGSITGTCHFYKAS-----GNDLKLEKVDFHDRKKTSGNKITGI 424 (645)
Q Consensus 368 --------------~~~~v~~l~~sp~----g~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~i~~i 424 (645)
....+..|+++|+ ++.|+-....+. ++|.+. .... ...+...+.. .....-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~-~~~v~~~G~k-g~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG-KLNPELLGNR-GKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC-CCCCEEEEEC-CTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch-hhceEEeeec-CCCCCcceE
Confidence 0235778888887 677777665542 344432 2211 1111111111 001233456
Q ss_pred EEc-CCCCcEEEEEECCCeEEEEECCc-ce-----eeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 425 QFS-RDESQRIMITSEDSKLRILDGVD-VI-----HKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 425 ~~s-~~g~~~l~~~s~dg~I~iwd~~~-~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
++. .+| .++++--..+.|..|+... .. ..+.....-..+..+.+.++|.+.++.
T Consensus 281 ~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 675 555 7777888889999999765 22 333332233456777777666655554
No 354
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.77 E-value=46 Score=32.21 Aligned_cols=197 Identities=9% Similarity=0.085 Sum_probs=106.3
Q ss_pred cCCCeEEEEeCCCcEEEEec---C------CCeEEEE---ecCCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEeCCC--
Q 006424 296 SNSNYLLSCSMDKTVRMWQV---G------CNQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE-- 359 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~---~------~~~~~~~---~~~~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~-- 359 (645)
+....|+..+..|.+.-... . .|.++.. +.....|.++...+. ++.+++.++.+|.++-..+..
T Consensus 48 ~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~ 127 (323)
T 1wp5_A 48 NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK 127 (323)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh
Confidence 34456777777787665543 2 2332211 233445665533331 256788899999999887632
Q ss_pred ----Cc-EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006424 360 ----KR-VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 360 ----~~-~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+. ... -....+.+-.+........++..+.+|.+..+....-..... ........-.....|.++...+++..
T Consensus 128 ~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~ 207 (323)
T 1wp5_A 128 AQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDE 207 (323)
T ss_dssp CSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTC
T ss_pred hccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCc
Confidence 11 111 112235555555555566788899999998888753221100 00011111112356666655444422
Q ss_pred EEEEEECCCeEEEEECCcc---------eeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 433 RIMITSEDSKLRILDGVDV---------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~---------~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.+++.+..|..+..++.+. ...+... .....+..+....++..++..+.+|.+...++..
T Consensus 208 ~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 208 SIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 7888899999888775431 1112111 1222455444334455566777788777777654
No 355
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.24 E-value=49 Score=32.19 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=46.4
Q ss_pred eEEEEeC-CCcEEEEecCC--CeEEEE--ec-CCCcEEEEEEeeCCCCEEEEEeC-C---------CcEEEEeCCCCcEE
Q 006424 300 YLLSCSM-DKTVRMWQVGC--NQCLNV--FD-HHNYVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEKRVV 363 (645)
Q Consensus 300 ~l~s~s~-dg~I~iwd~~~--~~~~~~--~~-~~~~v~~l~~~p~~~~~l~s~s~-d---------g~i~vwd~~~~~~~ 363 (645)
.++.|+. ...+.++|..+ .+-... +. ....-.+++.. ++.+++.|+. + ..+.+||..+.+-.
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4455543 35688888864 332221 11 11111222222 5677777775 2 46899999887765
Q ss_pred EeeccC-C--CeEEEEEccCCCEEEEEecC
Q 006424 364 DWADVR-D--VISAICYIPDGKGFIVGSIT 390 (645)
Q Consensus 364 ~~~~~~-~--~v~~l~~sp~g~~l~~g~~d 390 (645)
...... . .-.+++. .+++.++.|+.+
T Consensus 100 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp ECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred ECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 543322 1 1122222 577777888754
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.96 E-value=43 Score=38.04 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=30.7
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec
Q 006424 289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD 325 (645)
Q Consensus 289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~ 325 (645)
.+.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45666666654 89999999999999999999988764
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.47 E-value=55 Score=30.85 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEE-EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEee
Q 006424 289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 366 (645)
Q Consensus 289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~ 366 (645)
.|..++......++. . ||.|..|-....-.+. .......|..++... ...++. . ||.|+.|-... +++-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 566666544333333 4 8999999654321111 111233566666642 334444 5 89999997653 2221111
Q ss_pred ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
.....|..++...+ +.++-+ +|.++.|-......... . ......|..++.... +.+.-. ||.|+.|
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~----~---~~~~~~i~~i~~G~~---~~~~l~-~G~v~~w 164 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV----P---AEAQSGVTALDGGVY---TALAVK-NGGVIAW 164 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC----C---GGGGSSEEEEEECSS---EEEEEE-TTEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC----C---ccCCCCeEEEEcccC---EEEEEE-CCEEEEe
Confidence 22346766665433 344445 99999997654332110 0 011256777776554 333334 7999999
Q ss_pred ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
-....-+.-........|..++...+. .++. .||.|+.|-...
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred cCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 744211110001113457777664332 3333 599999997654
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.81 E-value=60 Score=30.52 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=76.3
Q ss_pred cCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424 368 VRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446 (645)
Q Consensus 368 ~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw 446 (645)
....|.++.... +..+++..+.+|.++-..+.... ... -.........+..+..+...... ..++..+..|.+..+
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G~~~i~lkegD~l~~~~~~~~~-~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QGMPIIKLTEGDEVVSIASSVDE-THILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TTEECSCCCTTCCEEEEEECCSS-CEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CCeEEEecCCCCEEEEEEEeCCC-CEEEEEECCCEEEEE
Confidence 344555554421 46789999999999999876543 111 00011111123566666666543 688889999999888
Q ss_pred ECCc---------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 447 DGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 447 d~~~---------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
...+ ....+.. .....|.++...+++.+++..+..|.++...+..-
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 7432 1111222 23456777766667788999999999999887654
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.05 E-value=86 Score=35.56 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.4
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
.+.+++..+ +..++++-+.|+++|+|++.+++++..
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEee
Confidence 466777776 778999999999999999999988764
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.33 E-value=91 Score=29.25 Aligned_cols=191 Identities=8% Similarity=0.047 Sum_probs=107.7
Q ss_pred CeEEEEeCCCcEEEE---ecCCCeEEEEecCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCc-----EEE-eecc
Q 006424 299 NYLLSCSMDKTVRMW---QVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKR-----VVD-WADV 368 (645)
Q Consensus 299 ~~l~s~s~dg~I~iw---d~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~-----~~~-~~~~ 368 (645)
..|+.-+.+|.++-- ++..+.....+.....|..+.. +. ++.+++..+.+|.++-..+..-. ... -...
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke 114 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE 114 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC
Confidence 466666777766543 3322211111444556666644 31 35789999999999998764421 111 1223
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424 369 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 447 (645)
Q Consensus 369 ~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd 447 (645)
.+.+..+........++..+..|.+..+....-..... ........-.....|..+...+++ ..++..+..|.++...
T Consensus 115 gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~ 193 (276)
T 3no0_A 115 GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKIS 193 (276)
T ss_dssp TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC-SEEEEEETTSCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEeE
Confidence 45566665555667889999999988887643221100 000000011123566666555554 5888999999999887
Q ss_pred CCccee-------eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE--EeCCC
Q 006424 448 GVDVIH-------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV--WNYDE 492 (645)
Q Consensus 448 ~~~~~~-------~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i--wd~~~ 492 (645)
+.+... .... ...+.+..+....+...++..+.+|.+.. ++...
T Consensus 194 ~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 194 HEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp GGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred HHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 542111 1111 23445555544444556777778888887 77654
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=63.74 E-value=1.8e+02 Score=32.08 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=81.0
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc-------CCCeEEEEEccC-CCEEEEEecCCe----EE
Q 006424 327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-------RDVISAICYIPD-GKGFIVGSITGT----CH 394 (645)
Q Consensus 327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp~-g~~l~~g~~dg~----i~ 394 (645)
...|.+++++|.+.+.+++++..+.|...+=....-..+... ...+.+++++|. ...++++..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 458999999996677888888777776655333322222221 246999999984 344555543211 33
Q ss_pred EEEecCCceeeeEEeeccccc---cCCCCeEEEEEcCCCCcEEEEEECCCeEEEE-ECCcceeeEeec----CCCCCeEE
Q 006424 395 FYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKGL----PKSGSQMS 466 (645)
Q Consensus 395 iwd~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw-d~~~~~~~~~~~----~~~~~i~~ 466 (645)
||-....-..-.......... .....+..++++|.....++++...+.|..= |....-...... .....+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 444333322222222110000 0001345678887644567777645444322 211111111110 11246788
Q ss_pred EEEecC-CCEEEEEeCC-ccEE
Q 006424 467 ASFTTT-GKHIISIGDD-CRVY 486 (645)
Q Consensus 467 v~~sp~-~~~l~t~s~d-g~I~ 486 (645)
+.++|. +..++.+..+ +.|+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEE
T ss_pred EEECCCCCCEEEEEEcCCCeEE
Confidence 899884 4456666554 4443
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=63.14 E-value=1.4e+02 Score=30.53 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=22.6
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEEcC
Q 006424 201 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVT 230 (645)
Q Consensus 201 ~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~ 230 (645)
..-+.|+|.|||. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3468999999996 45555778999998643
No 363
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=59.91 E-value=1.4e+02 Score=29.47 Aligned_cols=204 Identities=12% Similarity=0.109 Sum_probs=108.8
Q ss_pred cCeEEEEEcC-CCeEEEEeCCCcEEEEe---cC------CCeEEEE---ecCCCcEEEEEEee--CCCCEEEEEeCCCcE
Q 006424 288 GDVLDLAWSN-SNYLLSCSMDKTVRMWQ---VG------CNQCLNV---FDHHNYVTCVQFNP--IDDNYFISGSIDGKV 352 (645)
Q Consensus 288 ~~V~~l~~s~-~~~l~s~s~dg~I~iwd---~~------~~~~~~~---~~~~~~v~~l~~~p--~~~~~l~s~s~dg~i 352 (645)
..+..+.... ...++..+..|.++-+. +. .|..+.. +.....|.++.... .++.+++.++..|.+
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~v 125 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTV 125 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 3444443333 34666677777766554 32 2333221 23445566654432 135689999999999
Q ss_pred EEEeCCCCc------E--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-EeeccccccCCCCeEE
Q 006424 353 RIWGVCEKR------V--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITG 423 (645)
Q Consensus 353 ~vwd~~~~~------~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~i~~ 423 (645)
+-..+..-. . +.+. ..+.+-.+........++..+..|.+..+....-...... .......-.....|.+
T Consensus 126 Krt~l~e~~~~~~~G~~ai~L~-~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~ 204 (370)
T 3l6v_A 126 KKTPLSEFAFRLARGKIAINLD-EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVS 204 (370)
T ss_dssp EEEEGGGGCSCCTTCEESSCCC-TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEeEHHHhhcccCCceEEEEeC-CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEE
Confidence 988763211 1 1122 2445555555555667888899998888876432211000 0000001112345555
Q ss_pred EEEcCC----------------------------------CCcEEEEEECCCeEEEEECCc---------ceeeEeecCC
Q 006424 424 IQFSRD----------------------------------ESQRIMITSEDSKLRILDGVD---------VIHKFKGLPK 460 (645)
Q Consensus 424 i~~s~~----------------------------------g~~~l~~~s~dg~I~iwd~~~---------~~~~~~~~~~ 460 (645)
+...+. +...+++.+..|..+...+.+ ....+.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~ 284 (370)
T 3l6v_A 205 LIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER 284 (370)
T ss_dssp EEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC
Confidence 544431 225789999999999887542 1222222223
Q ss_pred CCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 461 SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 461 ~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
.+.+..+.+..+...++..+..|.+.-..+..
T Consensus 285 ~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 285 NGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp TCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 45566655544555666667778777666654
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.77 E-value=1.2e+02 Score=28.91 Aligned_cols=190 Identities=9% Similarity=0.085 Sum_probs=111.4
Q ss_pred CeEEEEeCCCcEEEEecCCCeE-------E--EEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CCc-----
Q 006424 299 NYLLSCSMDKTVRMWQVGCNQC-------L--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EKR----- 361 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~~~~-------~--~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~---~~~----- 361 (645)
..+++.+.+|.|+--.+..-+. + ..+...+.+..+.... ..+.++..+..|.++-+... ...
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 3788889999998876643211 1 1223444555555555 56677777888987766543 211
Q ss_pred -----EEEeeccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 362 -----VVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 362 -----~~~~~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
.+.+ .....|.++...+ +..+++..+..|.++-..+........ .......-.....+..+.....+ ..
T Consensus 88 ~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~-~G~~~i~L~~~d~lv~~~~~~~~-~~ 164 (312)
T 1suu_A 88 QNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKS-RGVIVIKLNDKDFVTSAEIVFKD-EK 164 (312)
T ss_dssp CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----CEECBCCCTTCCEEEEEEECTT-CE
T ss_pred cChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCC-CcEEEEecCCCCEEEEEEEeCCC-CE
Confidence 1111 2233455543332 467888999999999888754322110 00011111123566666655443 57
Q ss_pred EEEEECCCeEEEEECCc---------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 434 IMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~---------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++..+.+|.+..+...+ ....+... ....|.++..-.++..+++.+..|..+..++..-
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 88999999999888543 12222222 3456667666556777888999999999988653
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.28 E-value=1.4e+02 Score=28.44 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=109.2
Q ss_pred cCCCeEEEEeCCCcEEEEec---C------CCeEEE---EecCCCcEEEEEEee--CCCCEEEEEeCCCcEEEEeCCC--
Q 006424 296 SNSNYLLSCSMDKTVRMWQV---G------CNQCLN---VFDHHNYVTCVQFNP--IDDNYFISGSIDGKVRIWGVCE-- 359 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~---~------~~~~~~---~~~~~~~v~~l~~~p--~~~~~l~s~s~dg~i~vwd~~~-- 359 (645)
+....|+..+..|.++-... . .|.++. .+.....|.++...+ .++.+++.++.+|.++-..+..
T Consensus 51 ~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 130 (307)
T 1zi0_A 51 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 130 (307)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGT
T ss_pred CCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhh
Confidence 34456777777787665543 2 233222 123445566654321 1456788899999999887642
Q ss_pred -----CcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006424 360 -----KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ 432 (645)
Q Consensus 360 -----~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~ 432 (645)
+.. ..+... +.+-.+........++..+.+|.+..+....-..... ........-.....|.++...+++ .
T Consensus 131 ~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~ 208 (307)
T 1zi0_A 131 RLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD-G 208 (307)
T ss_dssp TCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS-C
T ss_pred ccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC-C
Confidence 111 112233 5555555555566788889999988887753221100 000011111123567777655544 5
Q ss_pred EEEEEECCCeEEEEECCcc---------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 433 RIMITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 433 ~l~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
.+++.+..|.++-.++.+. ...+......+.+..+....+...++..+.+|.+.-++...-
T Consensus 209 ~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 209 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 7888899999998875321 112222223356666555445556667777888777776543
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.31 E-value=2e+02 Score=28.23 Aligned_cols=190 Identities=11% Similarity=0.148 Sum_probs=109.0
Q ss_pred CeEEEEeCCCcEEEEecCC---------CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe---CCC------C
Q 006424 299 NYLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG---VCE------K 360 (645)
Q Consensus 299 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd---~~~------~ 360 (645)
..+++.+.+|.|+--.+.. +.....+...+.+..+.... ..+.++..+..|.++-+. +.. |
T Consensus 8 ~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G 86 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSNARG 86 (370)
T ss_dssp CEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred CEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcccCC
Confidence 4788899999998765421 22233344556666666555 556677777788776554 322 1
Q ss_pred cEE-Ee--eccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 361 RVV-DW--ADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 361 ~~~-~~--~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
... .+ ......|.++..-. ++.+++.++..|.++-..+........ -.... .......+..+...... ..
T Consensus 87 ~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai--~L~~~d~lv~v~~~~~~-~~ 163 (370)
T 3l6v_A 87 RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI--NLDEGDALVGVALTDGD-RD 163 (370)
T ss_dssp EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS--CCCTTCCEEEEEEECSC-CE
T ss_pred cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE--EeCCCCEEEEEEEeCCC-ce
Confidence 111 11 12344555554332 456899999999999888754332110 00000 00113455555555443 57
Q ss_pred EEEEECCCeEEEEECCc---------ceeeEeecCCCCCeEEEEEec---------------------------------
Q 006424 434 IMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTT--------------------------------- 471 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~---------~~~~~~~~~~~~~i~~v~~sp--------------------------------- 471 (645)
++..+..|.+..++..+ ....+.. .....|.++...+
T Consensus 164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-------------------------------
T ss_pred EEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 88888899888887432 1122222 1345566665544
Q ss_pred --CCCEEEEEeCCccEEEEeCCCC
Q 006424 472 --TGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 472 --~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
++..+++.+..|..+...+..-
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGS
T ss_pred ccCCceEEEeeCCCCEEEEEHHHh
Confidence 4568999999999998887643
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.76 E-value=54 Score=38.12 Aligned_cols=37 Identities=19% Similarity=0.523 Sum_probs=29.2
Q ss_pred CeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec
Q 006424 289 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD 325 (645)
Q Consensus 289 ~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~ 325 (645)
.+.+++..++ .++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3344444555 489999999999999999999988764
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.36 E-value=2.3e+02 Score=27.21 Aligned_cols=195 Identities=10% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCCeEEEEeCCCcEEEE---ecC------CCeEEEE---ecCCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEeCCCCc-
Q 006424 297 NSNYLLSCSMDKTVRMW---QVG------CNQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEKR- 361 (645)
Q Consensus 297 ~~~~l~s~s~dg~I~iw---d~~------~~~~~~~---~~~~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~~- 361 (645)
....|+.-+..|.++-. ++. .|.++.. +.....|.++...+. ++.+++.++.+|.++-..+..-.
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~ 131 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDS 131 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhc
Confidence 33456666666765544 332 2333221 234455666544331 36789999999999988764311
Q ss_pred -----E--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE---EeeccccccCCCCeEEEEEcCCCC
Q 006424 362 -----V--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQFSRDES 431 (645)
Q Consensus 362 -----~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~s~~g~ 431 (645)
. ..+. ..+.+..+........++..+..|.+..+.......+... .......-.....|.++...+.+
T Consensus 132 ~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~- 209 (327)
T 3uc1_A 132 NRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG- 209 (327)
T ss_dssp CCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT-
T ss_pred cccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC-
Confidence 1 1122 2445555555556678888999999888877621111100 00001111124567777666554
Q ss_pred cEEEEEECCCeEEEEECCcc---------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424 432 QRIMITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493 (645)
Q Consensus 432 ~~l~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~ 493 (645)
..++..+..|.++.-.+.+. ...+......+.+..+....+...++..+.+|.+.-++...-
T Consensus 210 ~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 210 TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 58999999999998875421 122222222345666655555667777788898888877643
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=42.85 E-value=3.6e+02 Score=29.24 Aligned_cols=174 Identities=13% Similarity=0.075 Sum_probs=88.0
Q ss_pred CcEEEEecCCCe--EEEEec--CCCcEEEEEEeeCCCC-----EEEEEeCC---CcEEEEeCCC--CcEEEeeccCCCeE
Q 006424 308 KTVRMWQVGCNQ--CLNVFD--HHNYVTCVQFNPIDDN-----YFISGSID---GKVRIWGVCE--KRVVDWADVRDVIS 373 (645)
Q Consensus 308 g~I~iwd~~~~~--~~~~~~--~~~~v~~l~~~p~~~~-----~l~s~s~d---g~i~vwd~~~--~~~~~~~~~~~~v~ 373 (645)
..|+.|.+.+.. -...+. ....-.....++ ++. .+++.+.+ ..+.+.|... ++...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 568888876542 223332 222222344455 444 34444422 3466666653 444444222221
Q ss_pred EEEEccCCCEEEEE----------ecCCeEEEEEecCCc------eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424 374 AICYIPDGKGFIVG----------SITGTCHFYKASGND------LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437 (645)
Q Consensus 374 ~l~~sp~g~~l~~g----------~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~ 437 (645)
.+..+.++.+++.. ...+.|...++.+.. .....+-.+. ....+..+.+..+ .++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~--~l~~~~ 366 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT----ANEVFNFISTTKD--RVFLAT 366 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC----TTEEEEEEEECSS--CEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC----CCCeEEEEEEECC--EEEEEE
Confidence 12334555544422 246778888887532 1111111111 1246778888876 577777
Q ss_pred ECCCe--EEEEECCcc---eee-EeecCCCCCeEEEEEecCCC-EEEEEeC---CccEEEEeCC
Q 006424 438 SEDSK--LRILDGVDV---IHK-FKGLPKSGSQMSASFTTTGK-HIISIGD---DCRVYVWNYD 491 (645)
Q Consensus 438 s~dg~--I~iwd~~~~---~~~-~~~~~~~~~i~~v~~sp~~~-~l~t~s~---dg~I~iwd~~ 491 (645)
..++. +.++|.... ... +... ..+.+.....++++. ++++.++ -+.++.+|+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77764 566664322 122 2221 234566666677765 4444443 3678888876
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=42.67 E-value=2.3e+02 Score=26.97 Aligned_cols=196 Identities=14% Similarity=0.183 Sum_probs=104.7
Q ss_pred cCCCeEEEEeCCCcEEEEecC---CC------eE---EEEecCCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEeCCCC-
Q 006424 296 SNSNYLLSCSMDKTVRMWQVG---CN------QC---LNVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEK- 360 (645)
Q Consensus 296 s~~~~l~s~s~dg~I~iwd~~---~~------~~---~~~~~~~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~- 360 (645)
+....++..+..|.++-.... .. .. ...+.....|.++...+. ++.+++..+.+|.++-..+..-
T Consensus 56 ~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~ 135 (312)
T 1suu_A 56 NTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFK 135 (312)
T ss_dssp ETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhh
Confidence 344577777888887766543 11 11 011233445555533321 3567888899999998876431
Q ss_pred ------cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcE
Q 006424 361 ------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 433 (645)
Q Consensus 361 ------~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~ 433 (645)
....-....+.+-.+.....+..++..+.+|.+..+....-..... ........-..+..+..+...+++ ..
T Consensus 136 ~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~-~~ 214 (312)
T 1suu_A 136 AVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN-PY 214 (312)
T ss_dssp C----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC-SE
T ss_pred ccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC-Ce
Confidence 1111122245566665555566888999999999988764211110 000011011123566666655444 57
Q ss_pred EEEEECCCeEEEEECCcc---------eeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 434 IMITSEDSKLRILDGVDV---------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 434 l~~~s~dg~I~iwd~~~~---------~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
+++.+..|..+..++.+. ...+... .....+..+....+...+...+..|.+.-.....
T Consensus 215 l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 215 LLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 888999999999886432 1112211 1234454443333445555556667554444443
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.73 E-value=2.9e+02 Score=26.15 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=103.6
Q ss_pred eEEEEeCCCcEEEEecCCCeEEE---------EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC---CCC------c
Q 006424 300 YLLSCSMDKTVRMWQVGCNQCLN---------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV---CEK------R 361 (645)
Q Consensus 300 ~l~s~s~dg~I~iwd~~~~~~~~---------~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~---~~~------~ 361 (645)
.+++.+.+|.|+--.+.+-+... .+...+.+..+.... ..+.++..+..|.++-+.. ... .
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67888888888876654322111 122334454544444 5566777777888665543 321 1
Q ss_pred EEE-e--eccCCCeEEEEEc---cCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424 362 VVD-W--ADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 434 (645)
Q Consensus 362 ~~~-~--~~~~~~v~~l~~s---p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l 434 (645)
... . ......|.++..- .++.+++..+..|.++-..+........ -..... .. ..+.+..+...... ..+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~-l~-~~d~lv~~~~~~~~-~~i 160 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LV-DGDELIGVDLTSGE-DEV 160 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC-CC-TTCCEEEEEEECTT-CEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE-EC-CCCEEEEEEEeCCC-CEE
Confidence 110 1 1233456555432 3566899999999999887753222111 000000 01 12556555555443 578
Q ss_pred EEEECCCeEEEEECCcc---------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424 435 MITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 435 ~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~ 492 (645)
+..+.+|.+..++..+. ...+.. .....|.++...+++..+++.+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 88888998888875321 111122 2345677776555667888889999999887754
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.20 E-value=99 Score=35.93 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424 330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 365 (645)
Q Consensus 330 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 365 (645)
+.+++..+ +..++++-+.|+++|+|++.++.++..
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 44455555 778999999999999999999988764
No 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=32.36 E-value=3.7e+02 Score=26.42 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=76.2
Q ss_pred cEEEEeCCCC--cEEEeec-------cCCCeEEEEEc---cC----CCEEEEEe-cCCeEEEEEecCCceeeeE------
Q 006424 351 KVRIWGVCEK--RVVDWAD-------VRDVISAICYI---PD----GKGFIVGS-ITGTCHFYKASGNDLKLEK------ 407 (645)
Q Consensus 351 ~i~vwd~~~~--~~~~~~~-------~~~~v~~l~~s---p~----g~~l~~g~-~dg~i~iwd~~~~~~~~~~------ 407 (645)
.|.+||+.++ +++.... ....+..+.+. |+ +.+++++. ..+.|.+||+.+++.-...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777776 6554221 23457777777 22 34555554 3678999999876542211
Q ss_pred -----EeeccccccCCCCeEEEEEcCC----CCcEEEEEECC-CeEEEEEC---C--cceeeE--eecC-CCCCeEEEEE
Q 006424 408 -----VDFHDRKKTSGNKITGIQFSRD----ESQRIMITSED-SKLRILDG---V--DVIHKF--KGLP-KSGSQMSASF 469 (645)
Q Consensus 408 -----~~~~~~~~~~~~~i~~i~~s~~----g~~~l~~~s~d-g~I~iwd~---~--~~~~~~--~~~~-~~~~i~~v~~ 469 (645)
....+....-...+..|+++|+ + +.|.-.... ..++--.. + .....+ .+.. ....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0000100001247889999997 5 444444433 34444431 1 111111 1211 1233445677
Q ss_pred e-cCCCEEEEEeCCccEEEEeCCC
Q 006424 470 T-TTGKHIISIGDDCRVYVWNYDE 492 (645)
Q Consensus 470 s-p~~~~l~t~s~dg~I~iwd~~~ 492 (645)
+ .+|.++++--....|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 6 5777777777889999999875
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.93 E-value=1.6e+02 Score=30.95 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=42.6
Q ss_pred cEEEEEEeeCCCCEEEEEeC------------CCcEEEEeCCCCcEEEeecc--CCCeEEEEEccCCCEEEEEe
Q 006424 329 YVTCVQFNPIDDNYFISGSI------------DGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGS 388 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~~g~ 388 (645)
....|.|.+ ++.+.+.... ...+..++..++++..+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 466889998 8887774322 12577778878887765532 35789999999999888764
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.52 E-value=76 Score=34.33 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=30.5
Q ss_pred cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC
Q 006424 288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH 326 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 326 (645)
..|.++.+ ++.++++-+.|+++|+|++.+++++....-
T Consensus 222 ~~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555554 356999999999999999999999887654
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.30 E-value=6.2e+02 Score=27.35 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=56.3
Q ss_pred cCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecC-------CCcEEEEEEeeCCCCEEEEEeCC-------Cc
Q 006424 288 GDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSID-------GK 351 (645)
Q Consensus 288 ~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------~~~v~~l~~~p~~~~~l~s~s~d-------g~ 351 (645)
+.|..|+++|. +.++.+...+.|..++-....-.....+ ...|.+++++|.+.+.++++... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 37999999986 4677777667666654332222222221 23589999998655555555421 12
Q ss_pred EEEEeC-CCCcE---EEeecc-------CCCeEEEEEccC-CCEEEEEecC
Q 006424 352 VRIWGV-CEKRV---VDWADV-------RDVISAICYIPD-GKGFIVGSIT 390 (645)
Q Consensus 352 i~vwd~-~~~~~---~~~~~~-------~~~v~~l~~sp~-g~~l~~g~~d 390 (645)
..||.. ..++. ...... ...+..++++|. ...++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 345543 33332 111100 112467899885 4566666633
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.96 E-value=6.3e+02 Score=27.30 Aligned_cols=112 Identities=9% Similarity=0.116 Sum_probs=61.4
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc-------CCCeEEEEEcc-CCCEEEEEecC-------CeE
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-------RDVISAICYIP-DGKGFIVGSIT-------GTC 393 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp-~g~~l~~g~~d-------g~i 393 (645)
.|..++++|.+.+.++++...+.|...+-....-..+... ...+.+|+++| +.+.++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 7999999996667777777667776665433333333221 24589999998 33455555421 124
Q ss_pred EEEEecCCceeeeEEeecccccc---CCCCeEEEEEcCCCCcEEEEEECC
Q 006424 394 HFYKASGNDLKLEKVDFHDRKKT---SGNKITGIQFSRDESQRIMITSED 440 (645)
Q Consensus 394 ~iwd~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~s~~g~~~l~~~s~d 440 (645)
.||.....-.............. ....+..++++|..+..++++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 55555433322222222110000 011246788998765677777643
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.87 E-value=6.8e+02 Score=26.99 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=93.7
Q ss_pred EcCCC--eEEEEeCCC----cEEEEecCCCeEEEE-ecCCC--------cEEEEEEeeCCCCEEEEEe----------CC
Q 006424 295 WSNSN--YLLSCSMDK----TVRMWQVGCNQCLNV-FDHHN--------YVTCVQFNPIDDNYFISGS----------ID 349 (645)
Q Consensus 295 ~s~~~--~l~s~s~dg----~I~iwd~~~~~~~~~-~~~~~--------~v~~l~~~p~~~~~l~s~s----------~d 349 (645)
++|++ .+++-|..| .++++|+.+++.+.. +.... ....++|.. ++.++++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCCCC
Confidence 67776 445544444 699999999988742 22000 113447875 444444321 12
Q ss_pred CcEEEEeCCCCc---EEEeeccCCC-eEEEEEccCCCE-----EEEEecC---CeEEEEEecCCceeeeEEeeccccccC
Q 006424 350 GKVRIWGVCEKR---VVDWADVRDV-ISAICYIPDGKG-----FIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTS 417 (645)
Q Consensus 350 g~i~vwd~~~~~---~~~~~~~~~~-v~~l~~sp~g~~-----l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 417 (645)
..|+.|.+-+.. .+-+.+.... -.....++++++ ++..+.+ ..+.+.+..........+....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----- 290 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS----- 290 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC-----
Confidence 468888776532 2222222222 334455666663 3333312 3455555543222222221111
Q ss_pred CCCeEEEEEcCCCCcEEEEE----------ECCCeEEEEECCcce---------eeEeecCCCCCeEEEEEecCCCEEEE
Q 006424 418 GNKITGIQFSRDESQRIMIT----------SEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIIS 478 (645)
Q Consensus 418 ~~~i~~i~~s~~g~~~l~~~----------s~dg~I~iwd~~~~~---------~~~~~~~~~~~i~~v~~sp~~~~l~t 478 (645)
. ..+..+.++ .+++.. ...+.|...|+.... ..+........+..+.+..+ .++++
T Consensus 291 --~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 291 --D-ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp --T-CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred --c-ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 1 112334454 444422 245778888876431 12222334456778888765 57777
Q ss_pred EeCCcc--EEEEeCCCC
Q 006424 479 IGDDCR--VYVWNYDEL 493 (645)
Q Consensus 479 ~s~dg~--I~iwd~~~~ 493 (645)
...++. ++++++.++
T Consensus 366 ~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEETTEEEEEEECEETT
T ss_pred EEECCEEEEEEEECCCC
Confidence 777764 667776554
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.75 E-value=7.1e+02 Score=27.18 Aligned_cols=155 Identities=11% Similarity=0.077 Sum_probs=79.0
Q ss_pred ccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEe-cC-------CCcEEEEEEeeCCCCEEEEEeCCCc----E
Q 006424 287 KGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DH-------HNYVTCVQFNPIDDNYFISGSIDGK----V 352 (645)
Q Consensus 287 ~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-~~-------~~~v~~l~~~p~~~~~l~s~s~dg~----i 352 (645)
.+.|.+|+++|. +.++.++..+.|...+= .|+.-..+ .+ ...+.+++++|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999985 47777877777665542 23322222 11 2369999999844555655543311 2
Q ss_pred EEEe-CCCCcEEEeecc----------CCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424 353 RIWG-VCEKRVVDWADV----------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 420 (645)
Q Consensus 353 ~vwd-~~~~~~~~~~~~----------~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 420 (645)
.||. ...++.-..... ...+..++++|. .+.++++...+. +|-....-..-..+............
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 3332 334443322111 113567888874 346666664443 33332221111111110000011245
Q ss_pred eEEEEEcCCCCcEEEEEECC-CeEE
Q 006424 421 ITGIQFSRDESQRIMITSED-SKLR 444 (645)
Q Consensus 421 i~~i~~s~~g~~~l~~~s~d-g~I~ 444 (645)
+..+.+.|.....++++..+ +.|.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 78899988644566666654 4443
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.15 E-value=2.7e+02 Score=29.27 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred cCeEEEEEcCCCeEEEEeCC-------------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEe
Q 006424 288 GDVLDLAWSNSNYLLSCSMD-------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS 347 (645)
Q Consensus 288 ~~V~~l~~s~~~~l~s~s~d-------------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s 347 (645)
.....|.|.++|.|..+... ..|..++..+++....+. ....++.++|+| |++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 34667889988855543322 156667777777665553 335789999999 888877664
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.67 E-value=1.1e+02 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=28.9
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc
Q 006424 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 368 (645)
Q Consensus 329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 368 (645)
.|.++.+ +..++++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 578999999999999999999987764433
No 382
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.95 E-value=2.3e+02 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=40.1
Q ss_pred EEEEEEeeCCCCEEEEEeCC------------CcEEEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEE
Q 006424 330 VTCVQFNPIDDNYFISGSID------------GKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVG 387 (645)
Q Consensus 330 v~~l~~~p~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g 387 (645)
.-.|+|+| .+++++.-..+ ..+.+.+..++++..+. .....++.++|+||++.|++.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46789999 88866654322 23566677777776643 345689999999999887765
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.71 E-value=2.9e+02 Score=29.17 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcEEEEEECC------------CeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424 420 KITGIQFSRDESQRIMITSED------------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISI 479 (645)
Q Consensus 420 ~i~~i~~s~~g~~~l~~~s~d------------g~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~ 479 (645)
..-.|.|+|.| .+++.-..+ ..+.+.+.. .....+........++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999998 555544322 234444433 223333333466789999999999988775
Done!