BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006426
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 66/229 (28%)
Query: 185 AIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCP----------AITDRA 234
+ + CP+L VL N +GD GL +A C QL++L + + ++ R
Sbjct: 312 TLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369
Query: 235 LITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNL---------KSISIKDCRLVGDQ 285
LI +A+ C +L + + S I NE L+++G + NL + I D L D
Sbjct: 370 LIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL--DN 426
Query: 286 GIASLLSSATYSLEKVKLQRL-------NITDVSLAVIGHYGMAVTDLFLTGLPHVSERG 338
G+ SLL KL+R +TD+ L+ IG Y P+V
Sbjct: 427 GVRSLLIGCK------KLRRFAFYLRQGGLTDLGLSYIGQYS-----------PNVR--- 466
Query: 339 FWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAF 387
W++ +G +D GL +GCPNL++ +R C F
Sbjct: 467 -WML--------------LGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 164/405 (40%), Gaps = 42/405 (10%)
Query: 177 GVTSAGLRAIARGCPSLRVLSLWNTSSVGDEG--LCEIANGCHQLEKLD--LCQCPAITD 232
G T+ GL +I C ++ L + +S +G L E+A LE L+ + + I+
Sbjct: 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209
Query: 233 RALITIAKNCPKLIDLTIESCSSIGN-EGLQAVGRFCPNLKSISIKDCRLVGDQGIASLL 291
+ L TIA+NC L+ + +G+ E L+ VG F L D G+
Sbjct: 210 KDLETIARNCRSLVSV------KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263
Query: 292 SSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHG--LQ 349
+ + KL RL L+ +G M + F + + + H +Q
Sbjct: 264 MNLVFP---RKLCRL-----GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315
Query: 350 KLKSLTITSCMGVT-DLGLEAVGKGCPNLKQFCLRKCA----------FLSDNGLISFAK 398
K +L + V D GLE + + C LK+ + + A +S GLI+ A+
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 399 AAFSLESLQLEECHRITQ-LGFFGSLLN--CGEKLKALSLVSCLGIKDQNLGVRS-VSPC 454
LE + + + L G+ L C +L L + + GVRS + C
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 455 KSLRSLSIR-NCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKV 513
K LR + G D L+ +G+ P ++ + L G G +D G + C L K+
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGC-PNLQKL 493
Query: 514 NLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCR-KISDASLMAIA 557
+ GC + + + +L +L L + G R ++ LM +A
Sbjct: 494 EMRGCCFSERAIAAAVTKLP--SLRYLWVQGYRASMTGQDLMQMA 536
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 340 WVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKG-CPNLKQFCLRKCAFLSDNGLISFAK 398
WV + L++LKS+ M V+DL L+ + K +L+ L KC+ + +GL+S
Sbjct: 103 WVTEISNNLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161
Query: 399 AAFSLESLQLEE 410
+++L +EE
Sbjct: 162 HCRKIKTLLMEE 173
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 153/410 (37%), Gaps = 78/410 (19%)
Query: 270 NLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLN--ITDVSLAVIGHYGMAVTDLF 327
LKS+ + +V D + L + LE +KL + + TD L+++ H + L
Sbjct: 113 QLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH-CRKIKTLL 170
Query: 328 LTGLPHVSERGFWVMGSGHGLQKLKSLT--ITSCMGVTDLGLEAVGKGCPNLKQFCLRKC 385
+ + G W+ L+ L +T ++ LE + + C +L +
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230
Query: 386 AFLSDNGLISFAKAAFSLES----------------LQLEECHRITQLG--FFGS----- 422
L L+ F KAA +LE + L ++ +LG + G
Sbjct: 231 EILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287
Query: 423 LLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQ 482
L +++ L L+ L + + + + C +L L RN GD L VL + C Q
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTL--IQKCPNLEVLETRNV--IGDRGLEVLAQYCKQ 343
Query: 483 LQNV------DLSGLQG----VTDAGFLPVLESC-EAGLAKVNLSGCVNLTDKVVST-MA 530
L+ + D G++ V+ G + + + C E V +S N + + + T +
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403
Query: 531 ELHGWTLEMLN-----------------LDGCRK------------ISDASLMAIADNCP 561
L + L +L+ L GC+K ++D L I P
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463
Query: 562 LLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611
+ + + +D G+ + G NLQ L + GC A+ KL
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGC-PNLQKLEMRGCCFSERAIAAAVTKL 512
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 151/389 (38%), Gaps = 100/389 (25%)
Query: 178 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPA--ITDRAL 235
VT L IA+ + +VL L + +GL IA C L++LDL + ++ L
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176
Query: 236 ITIAKNCPKLIDLTIESC--SSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSS 293
L+ L I SC S + L+ + CPNLKS+ + R V + +A+LL
Sbjct: 177 SHFPDTYTSLVSLNI-SCLASEVSFSALERLVTRCPNLKSLKLN--RAVPLEKLATLLQR 233
Query: 294 A------------------TYSLEKVKLQ---------------------------RLNI 308
A YS V L RL
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293
Query: 309 TDVSLAVIGHYGMA--------VTDLFLTGLPHVSERGFWVMGSG-HGLQKLK-----SL 354
++S A + Y + + L++ L ++ + G V+ S L++L+
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPF 351
Query: 355 TITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAK-----AAFSLESLQLE 409
+ + +T+ GL +V GCP L+ L C +++ LI+ A+ F L ++ +
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLES-VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410
Query: 410 ECHRIT----QLGFFGSLLNC--------------------GEKLKALSLVSCLGIKDQN 445
+T +GF + +C G K + ++S D +
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470
Query: 446 LGVRSV-SPCKSLRSLSIRNCPGFGDASL 473
LG+ V S C SLR L IR+CP FGD +L
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCP-FGDKAL 498
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 41/273 (15%)
Query: 172 NNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCP--- 228
N S V S L + CP L+ LW + D GL +A+ C L +L +
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQ--RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352
Query: 229 -----AITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVG 283
A+T++ L++++ CPKL + + C + N L + R PN+ +
Sbjct: 353 MEPNVALTEQGLVSVSMGCPKL-ESVLYFCRQMTNAALITIARNRPNMTRFRL------- 404
Query: 284 DQGIASLLSSATYSLEKVKLQRLNITDVSL-AVIGHYGMAVTDLFLTGLPHVSERGFWVM 342
I + +LE + D+ A++ H L+ ++++ F +
Sbjct: 405 --CIIEPKAPDYLTLEPL--------DIGFGAIVEH---CKDLRRLSLSGLLTDKVFEYI 451
Query: 343 GSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFS 402
G+ +K++ L++ + G +DLG+ V GC +L++ +R C F D L++ A +
Sbjct: 452 GTYA--KKMEMLSV-AFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLET 507
Query: 403 LESLQLEECHRITQLGFFGSLLNCGEKLKALSL 435
+ SL + C FG+ G+K+ L++
Sbjct: 508 MRSLWMSSCSVS-----FGACKLLGQKMPKLNV 535
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 140/362 (38%), Gaps = 70/362 (19%)
Query: 280 RLVGDQGIASLLSSATYSLEKVKLQRL---NITDVSLAVIGHYGMAVTDLFLTGLPHVSE 336
+L D+ SL+ + Y +E+ +++ N VS A + V + L G PH ++
Sbjct: 22 QLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81
Query: 337 RGF-----------WVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKC 385
W+ L+ + + M VTD LE + K N K L C
Sbjct: 82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSC 140
Query: 386 AFLSDNGLISFAKAAFSLESLQLEECHRITQLG-FFGSLLNCGEKLKALSLVSCLGIKDQ 444
S +GL + A +L+ L L E G + + L +L+ +SCL +
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN-ISCLASEVS 199
Query: 445 NLGV-RSVSPCKSLRSLSI-RNCPGFGDASLAVLGKLCPQLQ------------------ 484
+ R V+ C +L+SL + R P LA L + PQL+
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPL---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256
Query: 485 -NVDLSG------LQGVTDA--GFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG- 534
+V LSG L G DA +LP + S + L +NLS + +V + +
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316
Query: 535 ---WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDV---------SKCAVTDFGIASLA 582
W L+ I DA L +A C L +L V A+T+ G+ S++
Sbjct: 317 QRLWVLDY--------IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368
Query: 583 HG 584
G
Sbjct: 369 MG 370
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 458 RSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLP------------VLES 505
R + I NC A++ + P++++V+L G D +P + S
Sbjct: 46 RKVFIGNCYAVSPATVI---RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102
Query: 506 CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCD 565
L ++ L V +TD + +A+ ++L L C S L AIA C L +
Sbjct: 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160
Query: 566 LDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611
LD+ + V D L+H ++SL+ + S+ S AL +L
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 451 VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGL 510
+S C L++LS+ D + L K L ++LSG G ++ +L SC + L
Sbjct: 114 LSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC-SRL 170
Query: 511 AKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRK-ISDASLMAIADNCPLLCDLDVS 569
++NLS C + T+K V T+ LNL G RK + + L + CP L LD+S
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230
Query: 570 KCAV-TDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGAL 608
+ + NY LQ LSLS C + ++L L
Sbjct: 231 DSVMLKNDCFQEFFQLNY--LQHLSLSRCYDIIPETLLEL 268
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 465 CP-GFGDASLAVLGKLCP-QLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLT 522
CP F D LA P ++Q++DLS V + L + S + L ++L G + L+
Sbjct: 77 CPRSFMDQPLA--EHFSPFRVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEG-LRLS 131
Query: 523 DKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC 571
D +V+T+A+ L LNL GC S+ +L + +C L +L++S C
Sbjct: 132 DPIVNTLAK--NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 451 VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGL 510
+S C L++LS+ D + L K L ++LSG G ++ +L SC + L
Sbjct: 76 LSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC-SRL 132
Query: 511 AKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRK-ISDASLMAIADNCPLLCDLDVS 569
++NLS C + T+K V T+ LNL G RK + + L + CP L LD+S
Sbjct: 133 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 192
Query: 570 KCAVTDFG-IASLAHGNYLNLQILSLSGCSMVSDKSLGAL 608
+ NY LQ LSLS C + ++L L
Sbjct: 193 DSVMLKNDCFQEFFQLNY--LQHLSLSRCYDIIPETLLEL 230
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 482 QLQNVDLSGLQGVTDAGFLP-VLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEML 540
++Q++DLS V + L +L C + L ++L G + L+D +V+T+A+ L L
Sbjct: 56 RVQHMDLSN--SVIEVSTLHGILSQC-SKLQNLSLEG-LRLSDPIVNTLAK--NSNLVRL 109
Query: 541 NLDGCRKISDASLMAIADNCPLLCDLDVSKC 571
NL GC S+ +L + +C L +L++S C
Sbjct: 110 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 15/222 (6%)
Query: 64 VSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN----IHRDEIRSLKPESEKK 119
VS + LPDE L IF L E + V KRW L S+ DE R +
Sbjct: 7 VSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNS 65
Query: 120 VELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVT 179
V VS + + SLEG + +D I A L +L++ G G +
Sbjct: 66 VIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSG---CSGFS 118
Query: 180 SAGLRAIARGCPSLRVLSL-WNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRA-LIT 237
L+ + C L L+L W +A+ + +L+L ++ L T
Sbjct: 119 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 178
Query: 238 IAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDC 279
+ + CP L+ L + + N+ Q + L+ +S+ C
Sbjct: 179 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRC 219
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 378 KQFCLRKCAFLSDNGLISFAKAAFSLESLQ---LEECHRITQLG-FFGSLLNCGEKLKAL 433
+QF + L+ N L + + SL L+ + C +T+L S GE
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ--- 180
Query: 434 SLVSCLGIKDQNLGVRS----VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLS 489
LV+ ++ + G+RS ++ ++L+SL IRN P L+ LG L ++
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP------LSALGPAIHHLPKLEEL 234
Query: 490 GLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWT-LEMLNLDGCRKI 548
L+G T P + A L ++ L C NL ++ ++H T LE L+L GC +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNL----LTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 549 SD-ASLMA-IADNCPLLC 564
S SL+A + NC +L
Sbjct: 291 SRLPSLIAQLPANCIILV 308
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 215 GCHQLEKLDLCQCPAITDRALITIAK--NCPK-LIDLTIESCSSIGNEGLQAVGRFCPNL 271
G +EK+ LC+C I D L +++ N K ++++ I SC ++ ++G+ A+ F NL
Sbjct: 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNL 141
Query: 272 KSISIKDCRLVGD-QGIASLLSSATYSLE 299
K + + D V + + I ++ SLE
Sbjct: 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 215 GCHQLEKLDLCQCPAITDRALITIAK--NCPK-LIDLTIESCSSIGNEGLQAVGRFCPNL 271
G +EK+ LC+C I D L +++ N K ++++ I SC ++ ++G+ A+ F NL
Sbjct: 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNL 141
Query: 272 KSISIKDCRLVGD-QGIASLLSSATYSLE 299
K + + D V + + I ++ SLE
Sbjct: 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 244 KLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 303
K++DL + + +G+ L + PNL+ + + DC L+ +G A+++ A LE + L
Sbjct: 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVV-DAFSKLENIGL 275
Query: 304 Q--RLNITDVSLAVI 316
Q RL ++ L +
Sbjct: 276 QTLRLQYNEIELDAV 290
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 244 KLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 303
K++DL + + +G+ L + PNL+ + + DC L+ +G A+++ A LE + L
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVV-DAFSKLENIGL 276
Query: 304 Q--RLNITDVSLAVI 316
Q RL ++ L +
Sbjct: 277 QTLRLQYNEIELDAV 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,643,003
Number of Sequences: 62578
Number of extensions: 688202
Number of successful extensions: 1604
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1554
Number of HSP's gapped (non-prelim): 36
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)