Query 006426
Match_columns 645
No_of_seqs 405 out of 2993
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 23:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-36 4.3E-41 279.4 12.7 383 66-565 72-456 (483)
2 KOG4341 F-box protein containi 100.0 7.9E-30 1.7E-34 235.9 9.4 324 209-643 129-456 (483)
3 KOG2120 SCF ubiquitin ligase, 100.0 1.9E-28 4.1E-33 216.4 10.0 294 63-405 95-391 (419)
4 PLN00113 leucine-rich repeat r 99.8 1.3E-19 2.9E-24 206.4 16.1 421 161-624 139-582 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.4E-19 2.9E-24 206.3 15.9 424 160-627 116-560 (968)
6 KOG4194 Membrane glycoprotein 99.7 1.7E-19 3.7E-24 174.4 0.2 243 349-622 197-448 (873)
7 KOG4194 Membrane glycoprotein 99.7 1.3E-18 2.8E-23 168.4 2.9 348 217-628 78-430 (873)
8 KOG1947 Leucine rich repeat pr 99.7 8.9E-16 1.9E-20 161.9 14.8 404 63-582 42-449 (482)
9 KOG2120 SCF ubiquitin ligase, 99.6 1.1E-15 2.3E-20 136.2 8.9 170 362-566 222-392 (419)
10 cd00116 LRR_RI Leucine-rich re 99.6 1.9E-13 4.1E-18 135.5 25.0 71 479-552 219-294 (319)
11 cd00116 LRR_RI Leucine-rich re 99.6 7.3E-14 1.6E-18 138.5 21.8 175 455-636 108-300 (319)
12 KOG1947 Leucine rich repeat pr 99.6 2.2E-14 4.8E-19 151.3 13.9 214 369-637 237-451 (482)
13 PLN03210 Resistant to P. syrin 99.5 3.3E-14 7.2E-19 162.3 12.6 315 269-628 589-908 (1153)
14 PLN03210 Resistant to P. syrin 99.5 1.1E-13 2.4E-18 158.1 11.0 340 187-571 554-903 (1153)
15 KOG0444 Cytoskeletal regulator 99.4 1.4E-14 3.1E-19 141.9 -3.8 368 162-626 7-375 (1255)
16 KOG0618 Serine/threonine phosp 99.3 3.8E-13 8.2E-18 138.2 1.3 225 375-625 241-488 (1081)
17 KOG1909 Ran GTPase-activating 99.3 1.6E-10 3.5E-15 106.3 15.5 91 347-439 28-131 (382)
18 KOG1909 Ran GTPase-activating 99.2 4.3E-10 9.2E-15 103.6 16.8 153 453-611 155-323 (382)
19 KOG0444 Cytoskeletal regulator 99.2 2.8E-13 6.1E-18 133.0 -8.0 156 452-626 194-351 (1255)
20 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.7E-16 115.8 2.1 216 346-601 118-339 (505)
21 PF12937 F-box-like: F-box-lik 99.1 7.9E-11 1.7E-15 77.9 3.2 37 66-103 1-37 (47)
22 KOG0618 Serine/threonine phosp 99.0 2.2E-11 4.7E-16 125.6 -2.2 224 349-600 241-489 (1081)
23 KOG3207 Beta-tubulin folding c 99.0 2.2E-10 4.7E-15 108.5 3.5 227 144-410 103-335 (505)
24 KOG0472 Leucine-rich repeat pr 98.8 6.4E-10 1.4E-14 104.1 0.0 219 215-466 89-308 (565)
25 KOG4237 Extracellular matrix p 98.8 6E-10 1.3E-14 104.1 -2.4 83 509-598 275-357 (498)
26 PRK15387 E3 ubiquitin-protein 98.7 6.2E-08 1.3E-12 103.3 11.1 265 269-608 201-465 (788)
27 PRK15387 E3 ubiquitin-protein 98.7 2.6E-08 5.6E-13 106.2 5.8 265 243-582 201-466 (788)
28 KOG3665 ZYG-1-like serine/thre 98.6 3.6E-08 7.9E-13 104.6 6.6 160 346-515 119-282 (699)
29 KOG3665 ZYG-1-like serine/thre 98.6 1.1E-07 2.4E-12 101.0 9.7 159 455-622 122-284 (699)
30 PF00646 F-box: F-box domain; 98.6 1.8E-08 3.8E-13 67.3 1.3 39 65-104 2-40 (48)
31 PRK15370 E3 ubiquitin-protein 98.5 5.7E-07 1.2E-11 96.7 11.3 216 349-610 220-437 (754)
32 smart00256 FBOX A Receptor for 98.4 1.8E-07 4E-12 60.0 2.8 34 69-103 1-34 (41)
33 KOG3864 Uncharacterized conser 98.3 9.2E-07 2E-11 75.7 5.8 86 509-599 102-188 (221)
34 PRK15370 E3 ubiquitin-protein 98.2 6.7E-06 1.4E-10 88.6 9.8 194 349-582 241-436 (754)
35 KOG2982 Uncharacterized conser 98.2 4.1E-06 8.8E-11 76.0 6.6 213 350-575 46-263 (418)
36 KOG1259 Nischarin, modulator o 98.2 4.3E-07 9.3E-12 82.2 0.3 127 428-572 284-410 (490)
37 KOG0472 Leucine-rich repeat pr 98.1 5.5E-08 1.2E-12 91.5 -5.9 105 509-626 436-540 (565)
38 KOG3864 Uncharacterized conser 98.1 2.5E-06 5.4E-11 73.1 4.4 105 536-644 102-209 (221)
39 PF14580 LRR_9: Leucine-rich r 98.1 1.3E-06 2.8E-11 75.7 2.7 84 534-622 63-149 (175)
40 COG5238 RNA1 Ran GTPase-activa 98.1 4.7E-05 1E-09 68.3 11.9 144 453-601 155-316 (388)
41 PF14580 LRR_9: Leucine-rich r 98.1 1.3E-06 2.7E-11 75.8 2.0 136 452-599 16-152 (175)
42 KOG2982 Uncharacterized conser 98.1 1.9E-06 4.1E-11 78.1 2.5 193 393-598 63-260 (418)
43 KOG1259 Nischarin, modulator o 98.0 2.4E-06 5.1E-11 77.5 1.7 127 454-598 283-410 (490)
44 KOG4237 Extracellular matrix p 98.0 1.5E-06 3.4E-11 81.8 -0.1 91 524-622 265-355 (498)
45 COG5238 RNA1 Ran GTPase-activa 98.0 0.00018 3.9E-09 64.8 12.7 173 451-629 116-318 (388)
46 KOG4658 Apoptotic ATPase [Sign 97.6 5.7E-05 1.2E-09 83.0 5.5 64 215-280 543-606 (889)
47 KOG4658 Apoptotic ATPase [Sign 97.6 3.2E-05 7E-10 84.9 2.5 65 240-310 542-609 (889)
48 KOG1859 Leucine-rich repeat pr 97.4 1.4E-05 3.1E-10 81.4 -3.1 23 374-396 108-130 (1096)
49 KOG1859 Leucine-rich repeat pr 97.4 8.2E-06 1.8E-10 83.1 -5.2 207 367-598 76-290 (1096)
50 PRK15386 type III secretion pr 97.2 0.00081 1.8E-08 66.1 7.2 58 373-441 50-107 (426)
51 PF13855 LRR_8: Leucine rich r 97.1 4E-05 8.7E-10 54.0 -2.5 58 536-597 2-59 (61)
52 smart00367 LRR_CC Leucine-rich 96.8 0.0011 2.4E-08 37.0 2.2 24 612-635 1-24 (26)
53 KOG4308 LRR-containing protein 96.8 0.0012 2.6E-08 67.6 4.1 49 351-401 89-140 (478)
54 PLN03150 hypothetical protein; 96.6 0.0028 6.1E-08 68.2 5.6 36 559-596 464-499 (623)
55 PRK15386 type III secretion pr 96.6 0.0018 4E-08 63.7 3.5 137 452-623 49-187 (426)
56 KOG2997 F-box protein FBX9 [Ge 96.5 0.0016 3.5E-08 60.0 2.7 40 63-103 104-148 (366)
57 PLN03215 ascorbic acid mannose 96.5 0.0015 3.3E-08 63.5 2.7 40 64-103 2-41 (373)
58 PF13855 LRR_8: Leucine rich r 96.5 0.00016 3.4E-09 50.9 -3.2 59 561-623 1-59 (61)
59 PF12799 LRR_4: Leucine Rich r 96.4 0.0032 7E-08 40.4 2.8 36 536-574 2-37 (44)
60 KOG4308 LRR-containing protein 96.4 0.0012 2.6E-08 67.6 1.2 206 430-641 89-317 (478)
61 KOG0617 Ras suppressor protein 96.3 7.3E-05 1.6E-09 62.2 -6.5 133 452-601 53-186 (264)
62 smart00367 LRR_CC Leucine-rich 96.3 0.0054 1.2E-07 34.1 3.0 24 586-609 1-24 (26)
63 KOG0281 Beta-TrCP (transducin 96.1 0.003 6.5E-08 58.6 2.2 40 63-103 72-115 (499)
64 KOG2739 Leucine-rich acidic nu 96.0 0.0021 4.6E-08 58.1 0.6 67 345-413 61-128 (260)
65 PF12799 LRR_4: Leucine Rich r 95.8 0.0097 2.1E-07 38.2 2.9 37 561-601 1-37 (44)
66 KOG2739 Leucine-rich acidic nu 95.7 0.0018 3.9E-08 58.5 -1.2 15 559-573 89-103 (260)
67 KOG1644 U2-associated snRNP A' 95.2 0.0088 1.9E-07 51.9 1.4 83 509-596 65-149 (233)
68 PLN03150 hypothetical protein; 95.2 0.035 7.6E-07 59.9 6.2 80 457-544 420-499 (623)
69 KOG2123 Uncharacterized conser 95.2 0.011 2.5E-07 53.8 2.1 57 534-596 40-97 (388)
70 KOG0617 Ras suppressor protein 95.1 0.00073 1.6E-08 56.4 -5.2 129 481-627 33-164 (264)
71 PF13516 LRR_6: Leucine Rich r 94.8 0.017 3.8E-07 31.3 1.4 23 560-582 1-23 (24)
72 KOG2123 Uncharacterized conser 94.6 0.014 3.1E-07 53.2 1.1 81 534-624 18-99 (388)
73 KOG1644 U2-associated snRNP A' 94.5 0.03 6.5E-07 48.7 2.7 90 346-466 61-151 (233)
74 KOG4579 Leucine-rich repeat (L 94.1 0.0086 1.9E-07 48.4 -1.2 60 509-574 54-113 (177)
75 KOG4579 Leucine-rich repeat (L 93.7 0.029 6.4E-07 45.4 1.1 118 498-626 15-135 (177)
76 COG4886 Leucine-rich repeat (L 93.6 0.075 1.6E-06 54.3 4.2 172 400-597 115-287 (394)
77 COG4886 Leucine-rich repeat (L 93.5 0.072 1.6E-06 54.4 3.9 177 374-576 115-292 (394)
78 PF13013 F-box-like_2: F-box-l 92.1 0.13 2.8E-06 40.4 2.6 30 65-95 21-50 (109)
79 PF13516 LRR_6: Leucine Rich r 91.4 0.12 2.5E-06 28.0 1.2 20 614-634 3-22 (24)
80 smart00368 LRR_RI Leucine rich 91.2 0.29 6.2E-06 27.7 2.8 22 561-582 2-23 (28)
81 KOG0531 Protein phosphatase 1, 90.6 0.064 1.4E-06 55.0 -0.5 60 346-412 92-151 (414)
82 KOG0531 Protein phosphatase 1, 87.2 0.32 6.9E-06 49.9 1.7 104 480-598 94-197 (414)
83 PF13504 LRR_7: Leucine rich r 87.0 0.43 9.4E-06 23.3 1.3 11 562-572 2-12 (17)
84 KOG0274 Cdc4 and related F-box 86.3 0.25 5.4E-06 51.7 0.5 40 63-103 105-144 (537)
85 smart00368 LRR_RI Leucine rich 85.5 0.97 2.1E-05 25.5 2.4 23 614-637 3-25 (28)
86 KOG3763 mRNA export factor TAP 83.9 2 4.4E-05 43.8 5.4 92 182-275 209-307 (585)
87 KOG3763 mRNA export factor TAP 79.0 3.2 7E-05 42.4 4.9 84 533-619 216-307 (585)
88 KOG3926 F-box proteins [Amino 70.7 5.8 0.00013 36.4 3.8 40 63-102 199-238 (332)
89 PF09372 PRANC: PRANC domain; 69.9 3.1 6.6E-05 32.3 1.8 26 64-90 70-95 (97)
90 PF00560 LRR_1: Leucine Rich R 66.1 2.5 5.5E-05 22.1 0.4 12 563-574 2-13 (22)
91 PF07723 LRR_2: Leucine Rich R 58.2 9.8 0.00021 21.0 1.9 24 245-268 2-25 (26)
92 smart00369 LRR_TYP Leucine-ric 56.0 8.8 0.00019 20.9 1.5 13 561-573 2-14 (26)
93 smart00370 LRR Leucine-rich re 56.0 8.8 0.00019 20.9 1.5 13 561-573 2-14 (26)
94 smart00365 LRR_SD22 Leucine-ri 45.3 18 0.0004 20.0 1.6 13 561-573 2-14 (26)
95 KOG0532 Leucine-rich repeat (L 43.6 4.7 0.0001 41.6 -1.5 59 536-597 212-270 (722)
96 KOG0532 Leucine-rich repeat (L 40.9 3.8 8.1E-05 42.2 -2.6 103 509-623 167-270 (722)
97 KOG2502 Tub family proteins [G 31.7 33 0.00071 33.2 2.1 41 64-104 43-90 (355)
98 KOG3735 Tropomodulin and leiom 31.2 1.5E+02 0.0033 28.8 6.3 93 503-596 193-292 (353)
99 PF13306 LRR_5: Leucine rich r 29.3 7.8 0.00017 31.8 -2.2 13 451-463 8-20 (129)
100 KOG3735 Tropomodulin and leiom 28.0 2E+02 0.0043 28.1 6.4 89 522-612 186-279 (353)
101 smart00364 LRR_BAC Leucine-ric 26.7 38 0.00083 18.8 1.0 12 562-573 3-14 (26)
102 PHA02875 ankyrin repeat protei 23.4 50 0.0011 33.9 2.0 27 63-90 384-410 (413)
103 PHA03100 ankyrin repeat protei 22.8 50 0.0011 34.7 1.9 30 63-93 445-474 (480)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2e-36 Score=279.38 Aligned_cols=383 Identities=26% Similarity=0.452 Sum_probs=245.2
Q ss_pred ccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecccCC
Q 006426 66 IEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLEGKK 145 (645)
Q Consensus 66 ~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (645)
.-.||+|++..||++|+ .+.+++++.||+-|+..+.+ ...|.+++.+....+++. ..
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD------------~~~~q~idL~t~~rDv~g----------~V 128 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALD------------GSCWQHIDLFTFQRDVDG----------GV 128 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhc------------cccceeeehhcchhcCCC----------cc
Confidence 33699999999999999 99999999999999999866 377888875554343331 11
Q ss_pred CcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecC
Q 006426 146 ATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLC 225 (645)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~ 225 (645)
+... ..+..+.++.|.++++. .+.+..+..+...||++++|.+.+|.++++..+..+.+.|++|+.|++.
T Consensus 129 V~~~-------~~Rcgg~lk~LSlrG~r---~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~ 198 (483)
T KOG4341|consen 129 VENM-------ISRCGGFLKELSLRGCR---AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH 198 (483)
T ss_pred eehH-------hhhhccccccccccccc---cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc
Confidence 1111 11223678888888854 5777778888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeecc
Q 006426 226 QCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR 305 (645)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~ 305 (645)
.|..+++..+..+++.|++|++|++++|+.++..+++.+.+.+..++++..++|...+...+.....+
T Consensus 199 ~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~------------ 266 (483)
T KOG4341|consen 199 SCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY------------ 266 (483)
T ss_pred ccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc------------
Confidence 88888888888888888888888888888877777777777777777777667665544444333222
Q ss_pred ccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCC
Q 006426 306 LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKC 385 (645)
Q Consensus 306 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 385 (645)
++-+.++++..|..++|.++..+..+|..|+.|+.++|
T Consensus 267 ------------------------------------------~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 267 ------------------------------------------CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC 304 (483)
T ss_pred ------------------------------------------ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC
Confidence 12233333444555666666566666666666666666
Q ss_pred CCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCC
Q 006426 386 AFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNC 465 (645)
Q Consensus 386 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 465 (645)
..+++..+..+.+++++|+.|.+..|..+++.++..+.. +++.|+.+++.+|
T Consensus 305 t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----------------------------n~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 305 TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----------------------------NCPHLERLDLEEC 356 (483)
T ss_pred CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----------------------------CChhhhhhccccc
Confidence 666666666666666666666666666655555554422 2455555555555
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc--ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecC
Q 006426 466 PGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC--EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLD 543 (645)
Q Consensus 466 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~ 543 (645)
..+.+..+..++.+||.|+.+.++.|..++++|+..+-... -..|+.+.+++|+.+++..++.+.. +++|+.+++-
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~ 434 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELI 434 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh--Ccccceeeee
Confidence 55555556666666677777777666666666655543211 0134444444444444444444433 4444444444
Q ss_pred CCCCCCHHHHHHHHhcCCcCCe
Q 006426 544 GCRKISDASLMAIADNCPLLCD 565 (645)
Q Consensus 544 ~c~~l~~~~l~~l~~~~~~L~~ 565 (645)
+|.+++.+++..+..++|++++
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred chhhhhhhhhHHHHhhCcccee
Confidence 4444444444444444444443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=7.9e-30 Score=235.92 Aligned_cols=324 Identities=27% Similarity=0.540 Sum_probs=193.0
Q ss_pred HHHHHhhCC-CCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHH
Q 006426 209 LCEIANGCH-QLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGI 287 (645)
Q Consensus 209 l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 287 (645)
+..+.++|. .|++|.+.+|..+.+..+..+..+||++++|.+.+|..+++..+..+.+.|++|++|++..|..+++..+
T Consensus 129 V~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 129 VENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred eehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 334444443 6677777777666666666666667777777776666666666666666666666666666554444333
Q ss_pred HHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHH
Q 006426 288 ASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGL 367 (645)
Q Consensus 288 ~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 367 (645)
..+... +++|++|++++|+.+...++
T Consensus 209 k~la~g------------------------------------------------------C~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 209 KYLAEG------------------------------------------------------CRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred HHHHHh------------------------------------------------------hhhHHHhhhccCchhhcCcc
Confidence 322221 23444444444444444444
Q ss_pred HHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccc
Q 006426 368 EAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLG 447 (645)
Q Consensus 368 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 447 (645)
+.+.+++.+++.+..++|.+..++.+..+...++.+.+++
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln---------------------------------------- 274 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN---------------------------------------- 274 (483)
T ss_pred hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc----------------------------------------
Confidence 4444444444444444444444444444433333333333
Q ss_pred cccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHH
Q 006426 448 VRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVS 527 (645)
Q Consensus 448 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 527 (645)
+..|..++|..+..+...|..|+.|..++|.++++..+.++.++|. +|+.|.+++|..+++.++.
T Consensus 275 --------------l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 275 --------------LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred --------------hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhhhh
Confidence 4444445555555555555555666666555555555556655555 6666666666666666666
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHHh--cCCCCccEEecCCCCCCCHHH
Q 006426 528 TMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLAH--GNYLNLQILSLSGCSMVSDKS 604 (645)
Q Consensus 528 ~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~ 604 (645)
.+.. .++.|+.+++..|..+.+..+.++..+|+.|++|.+++|. |+|+++..+.. -....|+.+.+++|+.+++..
T Consensus 340 ~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 340 MLGR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhc-CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 6666 6667777777776666666666666677777777777774 67776666653 255667777777777777766
Q ss_pred HHHHHHhcccccccccccccCCChHHHHHHHHhcccCcc
Q 006426 605 LGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDV 643 (645)
Q Consensus 605 ~~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~l~~~~~ 643 (645)
++++. .|++|+.+++.+|..++++++.+++.++|.-.+
T Consensus 419 Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 419 LEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred HHHHh-hCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 66654 466777777777777777777777777766443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-28 Score=216.41 Aligned_cols=294 Identities=21% Similarity=0.272 Sum_probs=221.2
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecc
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLE 142 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 142 (645)
.-.|..|||||+..||+.|+ .+++++++.|||||+++... ...|.+++...
T Consensus 95 gv~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d------------e~lW~~lDl~~---------------- 145 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD------------ESLWQTLDLTG---------------- 145 (419)
T ss_pred CCCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc------------ccceeeeccCC----------------
Confidence 45589999999999999999 99999999999999999866 36687766333
Q ss_pred cCCCcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcC-CCccEEEeccCCCCChHHHHHHHhhCCCCCE
Q 006426 143 GKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGC-PSLRVLSLWNTSSVGDEGLCEIANGCHQLEK 221 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 221 (645)
+++....+. .-..+++..+.+... .+.+..+...+.-+ ..|++|+|++. .++...+..+..+|.+|+.
T Consensus 146 -r~i~p~~l~-----~l~~rgV~v~Rlar~----~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 146 -RNIHPDVLG-----RLLSRGVIVFRLARS----FMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKN 214 (419)
T ss_pred -CccChhHHH-----HHHhCCeEEEEcchh----hhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhh
Confidence 122221111 112245555555543 12222222222222 46899999984 6889999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhccccccee
Q 006426 222 LDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKV 301 (645)
Q Consensus 222 L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L 301 (645)
|.|.+. .+.|.....+++ ..+|+.|+|++|.+++..++..+...|..|.+|++++|...++. +..+......+++.|
T Consensus 215 lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 215 LSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQL 291 (419)
T ss_pred cccccc-ccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhh
Confidence 999996 788888888877 78999999999999999999999999999999999999866555 666777777779999
Q ss_pred eeccc--cCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccce
Q 006426 302 KLQRL--NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQ 379 (645)
Q Consensus 302 ~L~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 379 (645)
+|+++ ++....+..+.+.||++.+|+++++..+++.-+..+ -+++.|++|.++.|..+....+..+ ...|.|.+
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~---~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~y 367 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF---FKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVY 367 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH---HhcchheeeehhhhcCCChHHeeee-ccCcceEE
Confidence 99987 466667888888999999999988877777555544 3457788888888887777666554 34688888
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCe
Q 006426 380 FCLRKCAFLSDNGLISFAKAAFSLES 405 (645)
Q Consensus 380 L~l~~~~~~~~~~l~~~~~~~~~L~~ 405 (645)
|++.+| +++...+.+.+.+++|+.
T Consensus 368 Ldv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 368 LDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EEeccc--cCchHHHHHHHhCccccc
Confidence 888886 555556666666777664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.3e-19 Score=206.41 Aligned_cols=421 Identities=17% Similarity=0.073 Sum_probs=202.7
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHh
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 240 (645)
.++|+.|++++|.....+. .....+++|++|+++++. +... +......+++|++|++++| .++.... ....
T Consensus 139 l~~L~~L~Ls~n~~~~~~p-----~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~~p-~~l~ 209 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIP-----NDIGSFSSLKVLDLGGNV-LVGK-IPNSLTNLTSLEFLTLASN-QLVGQIP-RELG 209 (968)
T ss_pred cCCCCEEECcCCcccccCC-----hHHhcCCCCCEEECccCc-cccc-CChhhhhCcCCCeeeccCC-CCcCcCC-hHHc
Confidence 3566666666653221111 112345666666666542 2211 1112235566666666665 2322111 1223
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
.+++|++|+++++. +.......+. .+++|++|++.+|.. ....... .... .+|+.|+++++.+.+.....+. ..
T Consensus 210 ~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l-~~~~p~~-l~~l-~~L~~L~L~~n~l~~~~p~~l~-~l 283 (968)
T PLN00113 210 QMKSLKWIYLGYNN-LSGEIPYEIG-GLTSLNHLDLVYNNL-TGPIPSS-LGNL-KNLQYLFLYQNKLSGPIPPSIF-SL 283 (968)
T ss_pred CcCCccEEECcCCc-cCCcCChhHh-cCCCCCEEECcCcee-ccccChh-HhCC-CCCCEEECcCCeeeccCchhHh-hc
Confidence 35666666666543 2221112222 255666666665532 1111111 1111 1255566655555443322222 23
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhc
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAA 400 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 400 (645)
++|+.|++.++. +.... ......+++|+.|+++++. +..... .....+++|+.|+++++ .++...... ...+
T Consensus 284 ~~L~~L~Ls~n~-l~~~~---p~~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~~ 355 (968)
T PLN00113 284 QKLISLDLSDNS-LSGEI---PELVIQLQNLEILHLFSNN-FTGKIP-VALTSLPRLQVLQLWSN-KFSGEIPKN-LGKH 355 (968)
T ss_pred cCcCEEECcCCe-eccCC---ChhHcCCCCCcEEECCCCc-cCCcCC-hhHhcCCCCCEEECcCC-CCcCcCChH-HhCC
Confidence 455555555442 11100 0011234455555555432 211111 11123455555555543 222111111 1224
Q ss_pred CCCCeeecccccc-----------------------cchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCC
Q 006426 401 FSLESLQLEECHR-----------------------ITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSL 457 (645)
Q Consensus 401 ~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 457 (645)
++|+.|+++++.. +... ....+.. .++|+.|++.+|......+ ..+..+++|
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~-~~~L~~L~L~~n~l~~~~p---~~~~~l~~L 430 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE-IPKSLGA-CRSLRRVRLQDNSFSGELP---SEFTKLPLV 430 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc-CCHHHhC-CCCCCEEECcCCEeeeECC---hhHhcCCCC
Confidence 4455555544321 1100 0011111 2566666666654322221 124456777
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCc
Q 006426 458 RSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTL 537 (645)
Q Consensus 458 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 537 (645)
+.|++++|. +..... .....+++|+.|++++|.-.. . +..... . ++|+.|++++| .+.......+.. +++|
T Consensus 431 ~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~-~-~p~~~~-~-~~L~~L~ls~n-~l~~~~~~~~~~--l~~L 501 (968)
T PLN00113 431 YFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFG-G-LPDSFG-S-KRLENLDLSRN-QFSGAVPRKLGS--LSEL 501 (968)
T ss_pred CEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeee-e-cCcccc-c-ccceEEECcCC-ccCCccChhhhh--hhcc
Confidence 777777765 222111 112245788888888753221 1 011111 1 27899999886 444333334444 7889
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccc
Q 006426 538 EMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLG 617 (645)
Q Consensus 538 ~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 617 (645)
+.|++++| ++.......+ .++++|++|+|++|.++......+. .+++|+.|++++|. ++.. ++......++|+.
T Consensus 502 ~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~ 575 (968)
T PLN00113 502 MQLKLSEN-KLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLDLSQNQ-LSGE-IPKNLGNVESLVQ 575 (968)
T ss_pred CEEECcCC-cceeeCChHH-cCccCCCEEECCCCcccccCChhHh--CcccCCEEECCCCc-cccc-CChhHhcCcccCE
Confidence 99999885 5554322333 4689999999999988776666666 78899999999855 5432 3333344577999
Q ss_pred ccccccc
Q 006426 618 LNLQHCN 624 (645)
Q Consensus 618 L~l~~C~ 624 (645)
|++++|+
T Consensus 576 l~ls~N~ 582 (968)
T PLN00113 576 VNISHNH 582 (968)
T ss_pred EeccCCc
Confidence 9999854
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.4e-19 Score=206.33 Aligned_cols=424 Identities=20% Similarity=0.145 Sum_probs=249.8
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHH
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIA 239 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 239 (645)
...+|++|++++|.....++. ..+++|++|+++++. +... +......+++|++|++++| .+.......+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-------~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~- 184 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-------GSIPNLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLGGN-VLVGKIPNSL- 184 (968)
T ss_pred cCCCCCEEECcCCccccccCc-------cccCCCCEEECcCCc-cccc-CChHHhcCCCCCEEECccC-cccccCChhh-
Confidence 357999999998854332322 246899999999863 4322 2233458899999999997 4433222223
Q ss_pred hhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhc
Q 006426 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHY 319 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 319 (645)
.++++|++|+++++. +.......+.. +++|+.|++.++.. .......+ ... .+|+.|++.++.+.......+. .
T Consensus 185 ~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l-~~~~p~~l-~~l-~~L~~L~L~~n~l~~~~p~~l~-~ 258 (968)
T PLN00113 185 TNLTSLEFLTLASNQ-LVGQIPRELGQ-MKSLKWIYLGYNNL-SGEIPYEI-GGL-TSLNHLDLVYNNLTGPIPSSLG-N 258 (968)
T ss_pred hhCcCCCeeeccCCC-CcCcCChHHcC-cCCccEEECcCCcc-CCcCChhH-hcC-CCCCEEECcCceeccccChhHh-C
Confidence 458999999999875 33222233444 89999999998763 22111111 222 3499999999988765555543 4
Q ss_pred CcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHh
Q 006426 320 GMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKA 399 (645)
Q Consensus 320 ~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 399 (645)
+++|+.|++.++..... .......+++|+.|+++++. +... +......+++|+.|++.++ .+.......+ ..
T Consensus 259 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~-~~ 330 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDLSDNS-LSGE-IPELVIQLQNLEILHLFSN-NFTGKIPVAL-TS 330 (968)
T ss_pred CCCCCEEECcCCeeecc----CchhHhhccCcCEEECcCCe-eccC-CChhHcCCCCCcEEECCCC-ccCCcCChhH-hc
Confidence 58899999987742111 01112356899999999864 3322 2233456899999999985 3443322333 46
Q ss_pred cCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccc---------------------cccccCCCCCc
Q 006426 400 AFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLG---------------------VRSVSPCKSLR 458 (645)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------~~~~~~~~~L~ 458 (645)
+++|+.|++.++....... ..+. ..++|+.|+++++......+.. +..+..+++|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p--~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIP--KNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred CCCCCEEECcCCCCcCcCC--hHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 8999999999864321111 1112 2278888888876432211110 01123345555
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCcc
Q 006426 459 SLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLE 538 (645)
Q Consensus 459 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~ 538 (645)
+|++++|. ++...... ...+++|+.|+++++ .++...-.. ....+ +|+.|++++|....... . ... .++|+
T Consensus 408 ~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~-~L~~L~L~~n~~~~~~p-~-~~~--~~~L~ 478 (968)
T PLN00113 408 RVRLQDNS-FSGELPSE-FTKLPLVYFLDISNN-NLQGRINSR-KWDMP-SLQMLSLARNKFFGGLP-D-SFG--SKRLE 478 (968)
T ss_pred EEECcCCE-eeeECChh-HhcCCCCCEEECcCC-cccCccChh-hccCC-CCcEEECcCceeeeecC-c-ccc--cccce
Confidence 66555553 21111111 123466666666653 232211111 11223 67777777753222111 1 111 46788
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccccccc
Q 006426 539 MLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGL 618 (645)
Q Consensus 539 ~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 618 (645)
.|++++| +++......+ .++++|++|++++|.+.......+. .+++|+.|++++|. ++......+ ...++|+.|
T Consensus 479 ~L~ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L 552 (968)
T PLN00113 479 NLDLSRN-QFSGAVPRKL-GSLSELMQLKLSENKLSGEIPDELS--SCKKLVSLDLSHNQ-LSGQIPASF-SEMPVLSQL 552 (968)
T ss_pred EEECcCC-ccCCccChhh-hhhhccCEEECcCCcceeeCChHHc--CccCCCEEECCCCc-ccccCChhH-hCcccCCEE
Confidence 8888874 5544322223 3578899999999987665555555 78899999999854 553322233 345779999
Q ss_pred ccccccCCC
Q 006426 619 NLQHCNAIS 627 (645)
Q Consensus 619 ~l~~C~~l~ 627 (645)
++++| +++
T Consensus 553 ~Ls~N-~l~ 560 (968)
T PLN00113 553 DLSQN-QLS 560 (968)
T ss_pred ECCCC-ccc
Confidence 99984 454
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-19 Score=174.43 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=125.1
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeeccccc--ccchhhHHHHhhhc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECH--RITQLGFFGSLLNC 426 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~ 426 (645)
.+|..|.++.. .++..... .++.+|+|+.|+|.. +.+.......| +.+++|+.|.+..+. .+.+..+..+
T Consensus 197 nsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnr-N~irive~ltF-qgL~Sl~nlklqrN~I~kL~DG~Fy~l---- 268 (873)
T KOG4194|consen 197 NSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNR-NRIRIVEGLTF-QGLPSLQNLKLQRNDISKLDDGAFYGL---- 268 (873)
T ss_pred chheeeecccC-cccccCHH-Hhhhcchhhhhhccc-cceeeehhhhh-cCchhhhhhhhhhcCcccccCcceeee----
Confidence 45555555542 23333332 224466666666665 33433222222 345666666665432 1222222221
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCC---ccchHHHH
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVT---DAGFLPVL 503 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~---~~~~~~l~ 503 (645)
.++++|++... .+...... .+..++.|+.|++++|. +........ ..+++|+.|+|+. +.++ ...+..+.
T Consensus 269 -~kme~l~L~~N-~l~~vn~g--~lfgLt~L~~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 269 -EKMEHLNLETN-RLQAVNEG--WLFGLTSLEQLDLSYNA-IQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLS 341 (873)
T ss_pred -cccceeecccc-hhhhhhcc--cccccchhhhhccchhh-hheeecchh-hhcccceeEeccc-cccccCChhHHHHHH
Confidence 56666666652 22222211 13356777777777664 322222222 2457777777776 3433 33333332
Q ss_pred hhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCC----CHHHHHHHHhcCCcCCeeeecCCCCChHHHH
Q 006426 504 ESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKI----SDASLMAIADNCPLLCDLDVSKCAVTDFGIA 579 (645)
Q Consensus 504 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l----~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~ 579 (645)
.|+.|+|++ +.++......+.. +.+|++|+|++ +.+ .| +. ..+.++++|+.|++.+|++....-.
T Consensus 342 -----~Le~LnLs~-Nsi~~l~e~af~~--lssL~~LdLr~-N~ls~~IED-aa-~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 342 -----QLEELNLSH-NSIDHLAEGAFVG--LSSLHKLDLRS-NELSWCIED-AA-VAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred -----Hhhhhcccc-cchHHHHhhHHHH--hhhhhhhcCcC-CeEEEEEec-ch-hhhccchhhhheeecCceeeecchh
Confidence 677777777 3555444343433 56777777776 343 23 12 2234577777777777776666556
Q ss_pred HHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccccccccccc
Q 006426 580 SLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 580 ~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 622 (645)
++. .+++|+.|+|.+ +.|-....+++..+ .|++|.+..
T Consensus 411 Afs--gl~~LE~LdL~~-NaiaSIq~nAFe~m--~Lk~Lv~nS 448 (873)
T KOG4194|consen 411 AFS--GLEALEHLDLGD-NAIASIQPNAFEPM--ELKELVMNS 448 (873)
T ss_pred hhc--cCcccceecCCC-Ccceeecccccccc--hhhhhhhcc
Confidence 665 777777777776 43433333333332 356665544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-18 Score=168.45 Aligned_cols=348 Identities=20% Similarity=0.201 Sum_probs=215.3
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCC--CcChHHHHHHHHhc
Q 006426 217 HQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCR--LVGDQGIASLLSSA 294 (645)
Q Consensus 217 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~ 294 (645)
+.-+.|+++++ .+.+..+..+ .++|+|+.+++..+. + +.+..+.....+|++|++.++. .++.+.+..+..
T Consensus 78 ~~t~~LdlsnN-kl~~id~~~f-~nl~nLq~v~l~~N~-L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a-- 150 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHIDFEFF-YNLPNLQEVNLNKNE-L--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA-- 150 (873)
T ss_pred cceeeeecccc-ccccCcHHHH-hcCCcceeeeeccch-h--hhcccccccccceeEEeeeccccccccHHHHHhHhh--
Confidence 34556777775 4555545433 347777777776532 1 2233444445567777776643 122233333322
Q ss_pred ccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcC
Q 006426 295 TYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGC 374 (645)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 374 (645)
|+.|+|+.+.++......+ +.-.++++|++++. .+++.....+ ..+
T Consensus 151 ---lrslDLSrN~is~i~~~sf-----------------------------p~~~ni~~L~La~N-~It~l~~~~F-~~l 196 (873)
T KOG4194|consen 151 ---LRSLDLSRNLISEIPKPSF-----------------------------PAKVNIKKLNLASN-RITTLETGHF-DSL 196 (873)
T ss_pred ---hhhhhhhhchhhcccCCCC-----------------------------CCCCCceEEeeccc-cccccccccc-ccc
Confidence 5555555554433211111 22257888998874 3655444333 345
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
.+|..|.|+. +.++.-....| +.+++|+.|++..+ .+..... +....+++|+.|.+...+ +...... .+..+
T Consensus 197 nsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN-~irive~--ltFqgL~Sl~nlklqrN~-I~kL~DG--~Fy~l 268 (873)
T KOG4194|consen 197 NSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRN-RIRIVEG--LTFQGLPSLQNLKLQRND-ISKLDDG--AFYGL 268 (873)
T ss_pred chheeeeccc-CcccccCHHHh-hhcchhhhhhcccc-ceeeehh--hhhcCchhhhhhhhhhcC-cccccCc--ceeee
Confidence 6899999998 56765544444 66999999999874 3322211 122333889999888743 3222221 24468
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
.++++|++..|. +....-..+. .+..|+.|+++. +.|..-.+.. -+.|+ +|+.|+|++ +.++......+.. +
T Consensus 269 ~kme~l~L~~N~-l~~vn~g~lf-gLt~L~~L~lS~-NaI~rih~d~-Wsftq-kL~~LdLs~-N~i~~l~~~sf~~--L 340 (873)
T KOG4194|consen 269 EKMEHLNLETNR-LQAVNEGWLF-GLTSLEQLDLSY-NAIQRIHIDS-WSFTQ-KLKELDLSS-NRITRLDEGSFRV--L 340 (873)
T ss_pred cccceeecccch-hhhhhccccc-ccchhhhhccch-hhhheeecch-hhhcc-cceeEeccc-cccccCChhHHHH--H
Confidence 999999999875 3222222222 358999999998 4443222211 12344 999999998 5676655555555 7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC---hHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHh
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT---DFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~---~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 611 (645)
..|+.|+|++ +.++...-..+ ..+.+|++|+|++|.+. +++-..+. .+++|++|.+.| ++|....-.++..
T Consensus 341 ~~Le~LnLs~-Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~--gl~~LrkL~l~g-Nqlk~I~krAfsg- 414 (873)
T KOG4194|consen 341 SQLEELNLSH-NSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFN--GLPSLRKLRLTG-NQLKSIPKRAFSG- 414 (873)
T ss_pred HHhhhhcccc-cchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhc--cchhhhheeecC-ceeeecchhhhcc-
Confidence 7899999998 67776554444 36899999999999732 33555555 799999999999 7777666666654
Q ss_pred cccccccccccccCCCh
Q 006426 612 GQTLLGLNLQHCNAIST 628 (645)
Q Consensus 612 ~~~L~~L~l~~C~~l~~ 628 (645)
.++|++|+|.+ +.|-.
T Consensus 415 l~~LE~LdL~~-NaiaS 430 (873)
T KOG4194|consen 415 LEALEHLDLGD-NAIAS 430 (873)
T ss_pred CcccceecCCC-Cccee
Confidence 47799999999 66643
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.66 E-value=8.9e-16 Score=161.93 Aligned_cols=404 Identities=31% Similarity=0.500 Sum_probs=249.2
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecc
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLE 142 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 142 (645)
.......|++....++...+ ..+......++++|....... ........ .|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~----~~~---------------------- 93 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLV-VLDRESVSLVTRLWLTLLGSL-RLRLKSLS----VSS---------------------- 93 (482)
T ss_pred eeeeeccccchhhhcccccc-cccccccchhhhhhhhhhhhh-hhhhhhcc----cCC----------------------
Confidence 46677889999999999999 888999999999999976442 11111100 000
Q ss_pred cCCCcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEE
Q 006426 143 GKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKL 222 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 222 (645)
............ ......+......................+..+ .....................+..++.+
T Consensus 94 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (482)
T KOG1947|consen 94 ---VDLDLLASLLVR---FKSLTLLDLLSLSKVSTLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESL 166 (482)
T ss_pred ---cCHHHhhhhhhc---chhhHHHHhccCccccccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHhee
Confidence 000000000000 001111110000000011111111122222222 2222222222223333344455566666
Q ss_pred ecCCCCC-CCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCC-CCcChHHHHHHHHhcccccce
Q 006426 223 DLCQCPA-ITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDC-RLVGDQGIASLLSSATYSLEK 300 (645)
Q Consensus 223 ~L~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~~L~~ 300 (645)
.+..+.. ........+...++.|+.|.+..|..+++.++..+...+++|++|++.++ ......+...
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------- 235 (482)
T KOG1947|consen 167 SLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL----------- 235 (482)
T ss_pred eeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-----------
Confidence 6655432 33444555555578888888888877777777777777888888888763 2221111100
Q ss_pred eeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceE
Q 006426 301 VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQF 380 (645)
Q Consensus 301 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 380 (645)
......+++|+.|+++++..+++.++..+...|++|+.|
T Consensus 236 -----------------------------------------~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L 274 (482)
T KOG1947|consen 236 -----------------------------------------LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETL 274 (482)
T ss_pred -----------------------------------------hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceE
Confidence 001133477888888887778888888888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEE
Q 006426 381 CLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSL 460 (645)
Q Consensus 381 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 460 (645)
.+.+|..+++.++..++..|+.|++|++..|..+++.++......+ ++|+.|.+..+. .|+.++.+
T Consensus 275 ~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c-~~l~~l~~~~~~-------------~c~~l~~~ 340 (482)
T KOG1947|consen 275 SLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC-PNLRELKLLSLN-------------GCPSLTDL 340 (482)
T ss_pred ccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC-cchhhhhhhhcC-------------CCccHHHH
Confidence 8888877888889988888899999999988888888777775553 777777665532 26677777
Q ss_pred eccCCCCCC-HHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccE
Q 006426 461 SIRNCPGFG-DASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEM 539 (645)
Q Consensus 461 ~l~~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~ 539 (645)
.+.++.... +.........|++|+.+.+..+. .++.+...... +|+.++ ..+..... ....++.
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~------------gc~~l~-~~l~~~~~-~~~~l~~ 405 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLR------------GCPNLT-ESLELRLC-RSDSLRV 405 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhc------------CCcccc-hHHHHHhc-cCCccce
Confidence 777766555 46777777888999999998876 66666544444 445555 44444444 3444899
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHH
Q 006426 540 LNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLA 582 (645)
Q Consensus 540 L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~ 582 (645)
|++..|..+++..+......+.+++.+++.++. ++......+.
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhh
Confidence 999999888888887776558889999999985 5555554444
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-15 Score=136.24 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=102.7
Q ss_pred CChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCC
Q 006426 362 VTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGI 441 (645)
Q Consensus 362 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 441 (645)
+.|.....++++ .+|+.|+|+.|..++..++.-+.+.|+.|..|+++-|...++. +.......
T Consensus 222 LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hi--------------- 284 (419)
T KOG2120|consen 222 LDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHI--------------- 284 (419)
T ss_pred cCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhh---------------
Confidence 334333344332 4555555555555555555555555555555555544333222 22222222
Q ss_pred CccccccccccCCCCCcEEeccCCC-CCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCC
Q 006426 442 KDQNLGVRSVSPCKSLRSLSIRNCP-GFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVN 520 (645)
Q Consensus 442 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~ 520 (645)
-++|+.|+++|+. ++.+..+..+...||+|.+|+|+.|..+++..+..+++- + .|++|.++.|-.
T Consensus 285 ------------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~-~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 285 ------------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-N-YLQHLSLSRCYD 350 (419)
T ss_pred ------------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-c-hheeeehhhhcC
Confidence 2455555555552 355566777778888888888888877877555555443 3 788888888877
Q ss_pred CChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCee
Q 006426 521 LTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDL 566 (645)
Q Consensus 521 l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L 566 (645)
+..+.+-.+.. .|+|.+|++.+| ++|..++.+.+.|++|+.-
T Consensus 351 i~p~~~~~l~s--~psl~yLdv~g~--vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 351 IIPETLLELNS--KPSLVYLDVFGC--VSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred CChHHeeeecc--CcceEEEEeccc--cCchHHHHHHHhCcccccc
Confidence 77666555544 688888888886 6666666676777777653
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=1.9e-13 Score=135.51 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=31.2
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcc---cCceEEEccCCCCCChHHHHHHHHh--hCCCccEEecCCCCCCCHHH
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCE---AGLAKVNLSGCVNLTDKVVSTMAEL--HGWTLEMLNLDGCRKISDAS 552 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~---~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~ 552 (645)
.+++|+.|++++| .+++.++..+...++ ++|++|++++| .+++.+...+... .+++|+.+++++ +.+++++
T Consensus 219 ~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~ 294 (319)
T cd00116 219 SLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEG 294 (319)
T ss_pred ccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHH
Confidence 3456666666663 455444444443321 14555555553 3333222222110 134455555555 3454443
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=7.3e-14 Score=138.48 Aligned_cols=175 Identities=27% Similarity=0.374 Sum_probs=86.6
Q ss_pred CCCcEEeccCCCCCCHHHHHHHH---hcC-CCCcEEEecCCCCCCccchHHH---HhhcccCceEEEccCCCCCChHHHH
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLG---KLC-PQLQNVDLSGLQGVTDAGFLPV---LESCEAGLAKVNLSGCVNLTDKVVS 527 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~---~~~-~~L~~L~l~~~~~i~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~ 527 (645)
++|++|++++|. +++.....+. ..+ ++|+.|++++| .++..+...+ +..+. +|++|++++| .+++..+.
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~-~L~~L~l~~n-~l~~~~~~ 183 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANR-DLKELNLANN-GIGDAGIR 183 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCC-CcCEEECcCC-CCchHHHH
Confidence 346666666554 3333332221 223 56666666663 3443332222 22222 5666666664 45544433
Q ss_pred HHHH--hhCCCccEEecCCCCCCCHHHHHHH---HhcCCcCCeeeecCCCCChHHHHHHHhc---CCCCccEEecCCCCC
Q 006426 528 TMAE--LHGWTLEMLNLDGCRKISDASLMAI---ADNCPLLCDLDVSKCAVTDFGIASLAHG---NYLNLQILSLSGCSM 599 (645)
Q Consensus 528 ~l~~--~~~~~L~~L~l~~c~~l~~~~l~~l---~~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~ 599 (645)
.+.. ...++|+.|++++| .+++.....+ ...+++|++|++++|++++.++..+... ..+.|+.|++.+| .
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~ 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-D 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-C
Confidence 3322 01346666666664 5554443332 2345666666666666666555554421 1356666666664 3
Q ss_pred CCHHHHHHHHHh---cccccccccccccCCChHHHHHHHH
Q 006426 600 VSDKSLGALRKL---GQTLLGLNLQHCNAISTNSVDMLVE 636 (645)
Q Consensus 600 l~~~~~~~~~~~---~~~L~~L~l~~C~~l~~~~~~~~~~ 636 (645)
+++.+...+... .++|+++++++ +.+++++...+.+
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~ 300 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAE 300 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHH
Confidence 544333333222 24566666666 5566665555544
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.57 E-value=2.2e-14 Score=151.28 Aligned_cols=214 Identities=32% Similarity=0.529 Sum_probs=125.6
Q ss_pred HHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcccccc
Q 006426 369 AVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGV 448 (645)
Q Consensus 369 ~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 448 (645)
.+...|++|+.|++..+..+++.++..++..|++|+.|.+.+|..+++.++..+...
T Consensus 237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----------------------- 293 (482)
T KOG1947|consen 237 LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----------------------- 293 (482)
T ss_pred hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh-----------------------
Confidence 355566777788877776677777777777777777777777766777777665443
Q ss_pred ccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCC-hHHHH
Q 006426 449 RSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLT-DKVVS 527 (645)
Q Consensus 449 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~-~~~~~ 527 (645)
+++|++|++++|..+++..+..+...|++|+.|.+..+.. |+ .++.+.+.+|.... +....
T Consensus 294 -----~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~-~l~~~~l~~~~~~~~d~~~~ 355 (482)
T KOG1947|consen 294 -----CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------CP-SLTDLSLSGLLTLTSDDLAE 355 (482)
T ss_pred -----cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------Cc-cHHHHHHHHhhccCchhHhH
Confidence 4555666666665566666666666677766665544322 11 33333333333332 23333
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHH
Q 006426 528 TMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGA 607 (645)
Q Consensus 528 ~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~ 607 (645)
.... .++.++.+.+..|. .++.+...+..+|+.| + ..+.... ..+..++.|++..|..+++..+..
T Consensus 356 ~~~~-~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l----------~-~~l~~~~-~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 356 LILR-SCPKLTDLSLSYCG-ISDLGLELSLRGCPNL----------T-ESLELRL-CRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred HHHh-cCCCcchhhhhhhh-ccCcchHHHhcCCccc----------c-hHHHHHh-ccCCccceEecccCccccccchHH
Confidence 3333 45555555555554 4444433333344444 2 2222222 133337778888887777777766
Q ss_pred HHHhcccccccccccccCCChHHHHHHHHh
Q 006426 608 LRKLGQTLLGLNLQHCNAISTNSVDMLVEQ 637 (645)
Q Consensus 608 ~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~ 637 (645)
....+..+..+++++|..++...+..+...
T Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 422 LADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred HhhhhhccccCCccCcccccchhhhhhhcc
Confidence 655466677788888888877776655554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=3.3e-14 Score=162.28 Aligned_cols=315 Identities=17% Similarity=0.274 Sum_probs=176.8
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
++|+.|.+.+++.-.-.. . ..+.+|+.|++.++.+...... ...+++|+.+++.++..+... .....+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~-~----f~~~~L~~L~L~~s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~i-----p~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPS-N----FRPENLVKLQMQGSKLEKLWDG--VHSLTGLRNIDLRGSKNLKEI-----PDLSMA 656 (1153)
T ss_pred cccEEEEecCCCCCCCCC-c----CCccCCcEEECcCccccccccc--cccCCCCCEEECCCCCCcCcC-----CccccC
Confidence 357777776654211100 0 0123477777776655432111 134567777777665433221 123446
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|++++|..+.... .....+++|+.|++++|..+... .... .+++|+.|.+.+|..+.... ....
T Consensus 657 ~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~L--p~~i-~l~sL~~L~Lsgc~~L~~~p------~~~~ 725 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEIL--PTGI-NLKSLYRLNLSGCSRLKSFP------DIST 725 (1153)
T ss_pred CcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCcc--CCcC-CCCCCCEEeCCCCCCccccc------cccC
Confidence 788888888776544322 22345778888888887655431 1111 46788888888776543221 1126
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCC--H--HH-HHHHHhcCCCCcEEEecCCCCCCccchHHHH
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFG--D--AS-LAVLGKLCPQLQNVDLSGLQGVTDAGFLPVL 503 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~--~~-l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 503 (645)
+|+.|++.++. +...+.. ..+++|++|.+.++.... . .. .......+++|+.|++++|..+.. +..-+
T Consensus 726 nL~~L~L~~n~-i~~lP~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si 798 (1153)
T PLN03210 726 NISWLDLDETA-IEEFPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSI 798 (1153)
T ss_pred CcCeeecCCCc-ccccccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhh
Confidence 77888877643 3333221 135677777776543100 0 00 001122346888888887654332 11123
Q ss_pred hhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHh
Q 006426 504 ESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAH 583 (645)
Q Consensus 504 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 583 (645)
..++ +|+.|+|++|..+...+.. + .+++|+.|++++|.++.. +....++|++|++++|.+... ...+.
T Consensus 799 ~~L~-~L~~L~Ls~C~~L~~LP~~-~---~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~i-P~si~- 866 (1153)
T PLN03210 799 QNLH-KLEHLEIENCINLETLPTG-I---NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEV-PWWIE- 866 (1153)
T ss_pred hCCC-CCCEEECCCCCCcCeeCCC-C---CccccCEEECCCCCcccc-----ccccccccCEeECCCCCCccC-hHHHh-
Confidence 3444 7888888888766643211 1 267888888888876543 222346788888888876643 22333
Q ss_pred cCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCCh
Q 006426 584 GNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIST 628 (645)
Q Consensus 584 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 628 (645)
.+++|+.|++.+|++++. ++......++|+.+++++|.+++.
T Consensus 867 -~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 867 -KFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred -cCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 678888888888888764 222223446678888888887753
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=1.1e-13 Score=158.06 Aligned_cols=340 Identities=18% Similarity=0.194 Sum_probs=158.0
Q ss_pred HhcCCCccEEEeccCCCCCh-----HHH-HHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHH
Q 006426 187 ARGCPSLRVLSLWNTSSVGD-----EGL-CEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEG 260 (645)
Q Consensus 187 ~~~~~~L~~L~l~~~~~~~~-----~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (645)
+..+++|+.|.+.... ... ..+ ..+....++|+.|++.+++ +.. +.... ...+|++|++.++. +..
T Consensus 554 F~~m~~L~~L~~~~~~-~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~--lP~~f-~~~~L~~L~L~~s~-l~~-- 625 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKK-WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRC--MPSNF-RPENLVKLQMQGSK-LEK-- 625 (1153)
T ss_pred HhcCccccEEEEeccc-ccccccceeecCcchhhcCcccEEEEecCCC-CCC--CCCcC-CccCCcEEECcCcc-ccc--
Confidence 4567888888885421 100 001 1111122468888887752 221 11111 25778888887753 221
Q ss_pred HHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhh
Q 006426 261 LQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFW 340 (645)
Q Consensus 261 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 340 (645)
+..-...+++|+.|+++++..+.... .+ .. ..+|+.|++.++..-......+ ...++|+.|++.++..+..-
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~-l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~L--- 697 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP--DL-SM-ATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEIL--- 697 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC--cc-cc-CCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCcc---
Confidence 11112347788888888765433221 11 11 1236777776643221111111 23456666666655433211
Q ss_pred hhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccch----
Q 006426 341 VMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQ---- 416 (645)
Q Consensus 341 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---- 416 (645)
.....+++|+.|++++|..+.. +....++|+.|++.++ .+.. +.... .+++|+.|.+.++....-
T Consensus 698 --p~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n-~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 698 --PTGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDET-AIEE--FPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred --CCcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCC-cccc--ccccc-cccccccccccccchhhccccc
Confidence 1112356677777776653322 1122356677776663 2221 11111 245666666554321000
Q ss_pred hhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCc
Q 006426 417 LGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTD 496 (645)
Q Consensus 417 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~ 496 (645)
...........++|+.|++++|..+..++.. +..+++|+.|++++|..+..... . ..+++|+.|++++|..+..
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~~LP~--~-~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPT--G-INLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcCeeCC--C-CCccccCEEECCCCCcccc
Confidence 0000011111256666666666555544332 44566666666666654432110 0 0245666666666654431
Q ss_pred cchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCC
Q 006426 497 AGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC 571 (645)
Q Consensus 497 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~ 571 (645)
- .... .+|+.|+|+++ .++..+ ..+.. +++|+.|++++|+++..... ....+++|+.+++++|
T Consensus 841 ~-----p~~~-~nL~~L~Ls~n-~i~~iP-~si~~--l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 841 F-----PDIS-TNISDLNLSRT-GIEEVP-WWIEK--FSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred c-----cccc-cccCEeECCCC-CCccCh-HHHhc--CCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 1 1111 15666666653 444322 12322 56666666666666554222 1223556666666665
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.38 E-value=1.4e-14 Score=141.87 Aligned_cols=368 Identities=18% Similarity=0.168 Sum_probs=168.5
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
|-++-++++++.+ +...+..-...+..++-|.|... .+ ..+..-..++.+|+.|.+.++. +.. ....+ ..
T Consensus 7 pFVrGvDfsgNDF----sg~~FP~~v~qMt~~~WLkLnrt-~L--~~vPeEL~~lqkLEHLs~~HN~-L~~-vhGEL-s~ 76 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDF----SGDRFPHDVEQMTQMTWLKLNRT-KL--EQVPEELSRLQKLEHLSMAHNQ-LIS-VHGEL-SD 76 (1255)
T ss_pred ceeecccccCCcC----CCCcCchhHHHhhheeEEEechh-hh--hhChHHHHHHhhhhhhhhhhhh-hHh-hhhhh-cc
Confidence 4556667777642 32223333334456777777542 11 2233334477788888887763 221 11222 34
Q ss_pred CCCCcEEeeccCCCCChHHHH-HHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 242 CPKLIDLTIESCSSIGNEGLQ-AVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
+|.|+.+.+..+. +...++. .+.+ +..|+.|+++.+..-.... -.... +++-.|+|++++|....-..+..
T Consensus 77 Lp~LRsv~~R~N~-LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~---~LE~A-Kn~iVLNLS~N~IetIPn~lfin-- 148 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNN-LKNSGIPTDIFR-LKDLTILDLSHNQLREVPT---NLEYA-KNSIVLNLSYNNIETIPNSLFIN-- 148 (1255)
T ss_pred chhhHHHhhhccc-cccCCCCchhcc-cccceeeecchhhhhhcch---hhhhh-cCcEEEEcccCccccCCchHHHh--
Confidence 7788888777643 3333332 2333 6677777877654211110 00111 12455566655554433222211
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhc
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAA 400 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 400 (645)
+..|-.|++++.. +. .+..-...+..|++|.+++++ +....+.++. .+
T Consensus 149 ---------------------------LtDLLfLDLS~Nr-Le--~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLP-sm 196 (1255)
T KOG0444|consen 149 ---------------------------LTDLLFLDLSNNR-LE--MLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLP-SM 196 (1255)
T ss_pred ---------------------------hHhHhhhccccch-hh--hcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCc-cc
Confidence 1223333443311 11 111111234455566665532 2222222221 13
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
..|+.|.+++... +- ..+ +..+..+.||..++++.|. +.- ..+.+ -.+
T Consensus 197 tsL~vLhms~TqR-Tl-------------------------~N~---Ptsld~l~NL~dvDlS~N~-Lp~-vPecl-y~l 244 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQR-TL-------------------------DNI---PTSLDDLHNLRDVDLSENN-LPI-VPECL-YKL 244 (1255)
T ss_pred hhhhhhhcccccc-hh-------------------------hcC---CCchhhhhhhhhccccccC-CCc-chHHH-hhh
Confidence 3334444433211 00 001 1113345556666665543 110 01111 123
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|+.|+|++ +.++.-.+.. .... +|++|+++. +.++..+ ..+.+ +++|++|.+.+ ++++-+++..-...+
T Consensus 245 ~~LrrLNLS~-N~iteL~~~~--~~W~-~lEtLNlSr-NQLt~LP-~avcK--L~kL~kLy~n~-NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 245 RNLRRLNLSG-NKITELNMTE--GEWE-NLETLNLSR-NQLTVLP-DAVCK--LTKLTKLYANN-NKLTFEGIPSGIGKL 315 (1255)
T ss_pred hhhheeccCc-CceeeeeccH--HHHh-hhhhhcccc-chhccch-HHHhh--hHHHHHHHhcc-CcccccCCccchhhh
Confidence 6666666666 3443211100 0011 667777776 3444322 23333 66777777765 566666555544456
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCC
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l 626 (645)
.+|+++..++|.+.- ....++ .|+.|++|.|+.+..|| ++.-....+-|+.|++...+++
T Consensus 316 ~~Levf~aanN~LEl-VPEglc--RC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLEL-VPEGLC--RCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhcccccc-Cchhhh--hhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcCc
Confidence 667777776665221 122333 56677777776544443 4444444556777777665554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=3.8e-13 Score=138.24 Aligned_cols=225 Identities=24% Similarity=0.218 Sum_probs=129.1
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
.+|+.+++++. .++. +......|.+|+.+...++. +..... .+.. ..+|+.|.+..|. +.........+
T Consensus 241 ~nl~~~dis~n-~l~~--lp~wi~~~~nle~l~~n~N~-l~~lp~-ri~~--~~~L~~l~~~~ne----l~yip~~le~~ 309 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSN--LPEWIGACANLEALNANHNR-LVALPL-RISR--ITSLVSLSAAYNE----LEYIPPFLEGL 309 (1081)
T ss_pred ccceeeecchh-hhhc--chHHHHhcccceEecccchh-HHhhHH-HHhh--hhhHHHHHhhhhh----hhhCCCccccc
Confidence 45777777763 3333 22444557888888776642 211111 1111 1455555555432 11222223456
Q ss_pred CCCcEEeccCCC--CCCHHHH-------HHHHh--------------cCCCCcEEEecCCCCCCccchHHHHhhcccCce
Q 006426 455 KSLRSLSIRNCP--GFGDASL-------AVLGK--------------LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLA 511 (645)
Q Consensus 455 ~~L~~L~l~~~~--~~~~~~l-------~~l~~--------------~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~ 511 (645)
+.|++|++..+. .+.+..+ ..+.. ..+.|+.|.+.+ +.+++..+..+.... .|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~--hLK 386 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFK--HLK 386 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhcccc--cee
Confidence 777777777653 1112111 11111 123445555555 456666655544333 899
Q ss_pred EEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccE
Q 006426 512 KVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQI 591 (645)
Q Consensus 512 ~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~ 591 (645)
.|+|++ +.+...+...+.+ +..|+.|+|+| |+++.... .+ .+|+.|++|...+|++.... .+. .++.|+.
T Consensus 387 VLhLsy-NrL~~fpas~~~k--le~LeeL~LSG-NkL~~Lp~-tv-a~~~~L~tL~ahsN~l~~fP--e~~--~l~qL~~ 456 (1081)
T KOG0618|consen 387 VLHLSY-NRLNSFPASKLRK--LEELEELNLSG-NKLTTLPD-TV-ANLGRLHTLRAHSNQLLSFP--ELA--QLPQLKV 456 (1081)
T ss_pred eeeecc-cccccCCHHHHhc--hHHhHHHhccc-chhhhhhH-HH-HhhhhhHHHhhcCCceeech--hhh--hcCcceE
Confidence 999998 4555444444544 78899999998 67766542 22 35888888888888765543 444 6788899
Q ss_pred EecCCCCCCCHHHHHHHHHhcccccccccccccC
Q 006426 592 LSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNA 625 (645)
Q Consensus 592 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~ 625 (645)
++++ |++++...++..... ++|++|+++|..+
T Consensus 457 lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred Eecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9997 477876666553322 7889999988553
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-10 Score=106.28 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=41.0
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcC---CccceEEeCCC--CCCCHH---HH---HHHHHhcCCCCeeecccccc--
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGC---PNLKQFCLRKC--AFLSDN---GL---ISFAKAAFSLESLQLEECHR-- 413 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~--~~~~~~---~l---~~~~~~~~~L~~L~l~~~~~-- 413 (645)
....++.+++++.. +.......+...+ ++|+..++++. ....++ .+ ......+|+|++|+++++.-
T Consensus 28 ~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34567777777643 5555544444333 34444444431 011111 11 11122356677777665421
Q ss_pred cchhhHHHHhhhcCcCCcEEeccccC
Q 006426 414 ITQLGFFGSLLNCGEKLKALSLVSCL 439 (645)
Q Consensus 414 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 439 (645)
-...++..++..+ .+|++|.+.+|-
T Consensus 107 ~g~~~l~~ll~s~-~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSC-TDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhc-cCHHHHhhhcCC
Confidence 1122333444443 556666555553
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=4.3e-10 Score=103.58 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=93.1
Q ss_pred CCCCCcEEeccCCCCCC---HHHHHHHHhcCCCCcEEEecCCCCCCccchHHH---HhhcccCceEEEccCCCCCChHHH
Q 006426 453 PCKSLRSLSIRNCPGFG---DASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPV---LESCEAGLAKVNLSGCVNLTDKVV 526 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~---~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~ 526 (645)
.-++|+.+...+|. +. ...+....+.+|.|+.+.+.. +.|..+|+..+ +.+|+ +|+.|+|.+ +.++..+-
T Consensus 155 ~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~-~LevLdl~D-Ntft~egs 230 (382)
T KOG1909|consen 155 SKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCP-HLEVLDLRD-NTFTLEGS 230 (382)
T ss_pred CCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCC-cceeeeccc-chhhhHHH
Confidence 34677777777664 33 333444455668888888887 56666666333 34566 888888887 45555544
Q ss_pred HHHHHh--hCCCccEEecCCCCCCCHHHHHHH----HhcCCcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCCCC
Q 006426 527 STMAEL--HGWTLEMLNLDGCRKISDASLMAI----ADNCPLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSGCS 598 (645)
Q Consensus 527 ~~l~~~--~~~~L~~L~l~~c~~l~~~~l~~l----~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~ 598 (645)
..++.. .+++|+.|+++.| .+.+.+...+ .+..|+|+.|.+.+|.|+.++...+.. ...|.|++|+|++|.
T Consensus 231 ~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 444431 3567778888887 5655444333 345678888888888777766554432 246777777777743
Q ss_pred CC--CHHHHHHHHHh
Q 006426 599 MV--SDKSLGALRKL 611 (645)
Q Consensus 599 ~l--~~~~~~~~~~~ 611 (645)
+ .+..+..+...
T Consensus 310 -l~e~de~i~ei~~~ 323 (382)
T KOG1909|consen 310 -LGEKDEGIDEIASK 323 (382)
T ss_pred -ccccchhHHHHHHh
Confidence 4 33444444433
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=2.8e-13 Score=133.01 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=97.5
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCC--ccchHHHHhhcccCceEEEccCCCCCChHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVT--DAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM 529 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 529 (645)
+.+++|..|++++....-+..... ...+.||..++++. ++++ .+.+..+. +|+.|+|++ +.++...+. .
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~Lp~vPecly~l~-----~LrrLNLS~-N~iteL~~~-~ 264 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNLPIVPECLYKLR-----NLRRLNLSG-NKITELNMT-E 264 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCCCcchHHHhhhh-----hhheeccCc-Cceeeeecc-H
Confidence 345566666666543221111111 12347888888887 4433 33444433 899999998 466654322 2
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHH
Q 006426 530 AELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 530 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
.. +.+|+.|+++. ++++..+ .-.-.++.|+.|.+.+|+++-+|+.+-. .++.+|+.+...+ ++++ -++...
T Consensus 265 ~~--W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSGI-GKL~~Levf~aan-N~LE--lVPEgl 335 (1255)
T KOG0444|consen 265 GE--WENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSGI-GKLIQLEVFHAAN-NKLE--LVPEGL 335 (1255)
T ss_pred HH--Hhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCcccccCCccch-hhhhhhHHHHhhc-cccc--cCchhh
Confidence 22 57899999998 5776532 2222478899999999987776654333 3667888888877 5553 355555
Q ss_pred HhcccccccccccccCC
Q 006426 610 KLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 610 ~~~~~L~~L~l~~C~~l 626 (645)
..|.+|+.|.|.. +++
T Consensus 336 cRC~kL~kL~L~~-NrL 351 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDH-NRL 351 (1255)
T ss_pred hhhHHHHHhcccc-cce
Confidence 6788999999976 554
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.7e-11 Score=115.81 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=145.3
Q ss_pred cCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhh
Q 006426 346 HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLN 425 (645)
Q Consensus 346 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (645)
+.+.+|+.+.+.++. +.+.+.+...+.||+++.|++++.-.-.-..+..+++.+|+|+.|+++.+......
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~-------- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI-------- 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc--------
Confidence 445678888887754 55555556667889999999998533345667888888999999988864211000
Q ss_pred cCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhh
Q 006426 426 CGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES 505 (645)
Q Consensus 426 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 505 (645)
.+..+ ..++.|+.|.++.|. ++...+..+...||+|+.|.+.++..+...... ..
T Consensus 189 --~s~~~-------------------~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~ 243 (505)
T KOG3207|consen 189 --SSNTT-------------------LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TK 243 (505)
T ss_pred --cccch-------------------hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecch---hh
Confidence 00000 136788899999997 778888888899999999999986433322211 11
Q ss_pred cccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHH-----HHHhcCCcCCeeeecCCCCChH-HHH
Q 006426 506 CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLM-----AIADNCPLLCDLDVSKCAVTDF-GIA 579 (645)
Q Consensus 506 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~-----~l~~~~~~L~~L~l~~~~i~~~-~~~ 579 (645)
.+..|+.|+|++++.+.......+.. ++.|+.|+++.| .+++.... .....+++|+.|++..|+|.+- .+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~--l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGT--LPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhHHhhccccCCccccccccccccc--ccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 11289999999976665444444444 899999999985 66543322 2245689999999999998542 344
Q ss_pred HHHhcCCCCccEEecCCCCCCC
Q 006426 580 SLAHGNYLNLQILSLSGCSMVS 601 (645)
Q Consensus 580 ~l~~~~~~~L~~L~l~~c~~l~ 601 (645)
.+- .+++|+.|.+.. +.++
T Consensus 321 ~l~--~l~nlk~l~~~~-n~ln 339 (505)
T KOG3207|consen 321 HLR--TLENLKHLRITL-NYLN 339 (505)
T ss_pred hhh--ccchhhhhhccc-cccc
Confidence 444 677888888654 4444
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.08 E-value=7.9e-11 Score=77.92 Aligned_cols=37 Identities=38% Similarity=0.638 Sum_probs=33.0
Q ss_pred ccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 66 IEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 66 ~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
|..||+||+.+||+||+ .+|+.++++|||+|++++.+
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCC
Confidence 57899999999999999 99999999999999999855
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-11 Score=125.59 Aligned_cols=224 Identities=22% Similarity=0.201 Sum_probs=133.2
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
.+|+.++++... +.. +..+...|++|+.+...+ +.++.. ...+ ....+|+.|.+..+.. .. .........
T Consensus 241 ~nl~~~dis~n~-l~~--lp~wi~~~~nle~l~~n~-N~l~~l-p~ri-~~~~~L~~l~~~~nel-~y---ip~~le~~~ 310 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSN--LPEWIGACANLEALNANH-NRLVAL-PLRI-SRITSLVSLSAAYNEL-EY---IPPFLEGLK 310 (1081)
T ss_pred ccceeeecchhh-hhc--chHHHHhcccceEecccc-hhHHhh-HHHH-hhhhhHHHHHhhhhhh-hh---CCCcccccc
Confidence 578888888643 222 235556789999999887 344321 1111 1234444444433211 00 000011114
Q ss_pred CCcEEeccccCCCCccccccc-----------------------cccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcE
Q 006426 429 KLKALSLVSCLGIKDQNLGVR-----------------------SVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQN 485 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~-----------------------~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~ 485 (645)
.|++|++... ++...+.... .-...+.|+.|.+.+|. ++|..+..+. ++++|+.
T Consensus 311 sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~-~~~hLKV 387 (1081)
T KOG0618|consen 311 SLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCFPVLV-NFKHLKV 387 (1081)
T ss_pred eeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccchhhhc-cccceee
Confidence 4555555442 1211111000 01134667777777765 7777776654 5599999
Q ss_pred EEecCC--CCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcC
Q 006426 486 VDLSGL--QGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLL 563 (645)
Q Consensus 486 L~l~~~--~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L 563 (645)
|+|+++ ..+.+..+..+- .|+.|+|+| +.++..+ ..+.. ++.|+.|...+ |++...+ .+. .++.|
T Consensus 388 LhLsyNrL~~fpas~~~kle-----~LeeL~LSG-NkL~~Lp-~tva~--~~~L~tL~ahs-N~l~~fP--e~~-~l~qL 454 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLE-----ELEELNLSG-NKLTTLP-DTVAN--LGRLHTLRAHS-NQLLSFP--ELA-QLPQL 454 (1081)
T ss_pred eeecccccccCCHHHHhchH-----HhHHHhccc-chhhhhh-HHHHh--hhhhHHHhhcC-Cceeech--hhh-hcCcc
Confidence 999984 234444444332 899999999 5777665 44555 78999999877 5665433 343 58999
Q ss_pred CeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCC
Q 006426 564 CDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMV 600 (645)
Q Consensus 564 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 600 (645)
+.+|++.|+++...+.... .-|+|+.|+++|+.++
T Consensus 455 ~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEecccchhhhhhhhhhC--CCcccceeeccCCccc
Confidence 9999999998877666554 3489999999997753
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.2e-10 Score=108.51 Aligned_cols=227 Identities=19% Similarity=0.224 Sum_probs=132.0
Q ss_pred CCCcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEe
Q 006426 144 KKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLD 223 (645)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 223 (645)
+.+.-+.+..++....-...|+++.|+.+ .+...........||+++.|+|+..-...-..+..++..+|+|+.|+
T Consensus 103 K~vE~iGfDki~akQsn~kkL~~IsLdn~----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 103 KQVEFIGFDKIAAKQSNLKKLREISLDNY----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred ceeEEecHHHHHHHhhhHHhhhheeecCc----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc
Confidence 33444445555555555567888888876 34444444667788999999988743233456777788889999999
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeee
Q 006426 224 LCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 303 (645)
Q Consensus 224 L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L 303 (645)
|+.+. +....-...-..+++|+.|.|+.|. ++...+..+...+|+|+.|.+.++..+. +.........+|+.|+|
T Consensus 179 ls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 179 LSSNR-LSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIIL---IKATSTKILQTLQELDL 253 (505)
T ss_pred ccccc-ccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccc---eecchhhhhhHHhhccc
Confidence 88753 2211111111246888899998875 6677777787788999998888774221 11111122223666666
Q ss_pred ccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHH-----HHHHhhcCCccc
Q 006426 304 QRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLG-----LEAVGKGCPNLK 378 (645)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~L~ 378 (645)
+++.+-+....... ..+|.|+.|+++.+ ++.+.. .......+|+|+
T Consensus 254 s~N~li~~~~~~~~----------------------------~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKV----------------------------GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred cCCccccccccccc----------------------------ccccchhhhhcccc-CcchhcCCCccchhhhcccccce
Confidence 66665443332222 33455555555543 122211 112234578888
Q ss_pred eEEeCCCCCCCH-HHHHHHHHhcCCCCeeeccc
Q 006426 379 QFCLRKCAFLSD-NGLISFAKAAFSLESLQLEE 410 (645)
Q Consensus 379 ~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~ 410 (645)
.|++..+ .+.+ ..+..+ ..+++|+.|.+..
T Consensus 305 ~L~i~~N-~I~~w~sl~~l-~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 305 YLNISEN-NIRDWRSLNHL-RTLENLKHLRITL 335 (505)
T ss_pred eeecccC-ccccccccchh-hccchhhhhhccc
Confidence 8888874 3422 334443 2366777776544
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.82 E-value=6.4e-10 Score=104.10 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=101.1
Q ss_pred hCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcCh-HHHHHHHHh
Q 006426 215 GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGD-QGIASLLSS 293 (645)
Q Consensus 215 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~ 293 (645)
....++.|+.+.+ .+.. +..-....++|..|+.++..... ....+.. +-.|+.++..++...+. .++....+
T Consensus 89 ~l~~l~~l~vs~n-~ls~--lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~-~~~l~dl~~~~N~i~slp~~~~~~~~- 161 (565)
T KOG0472|consen 89 ELEALKSLNVSHN-KLSE--LPEQIGSLISLVKLDCSSNELKE--LPDSIGR-LLDLEDLDATNNQISSLPEDMVNLSK- 161 (565)
T ss_pred HHHHHHHhhcccc-hHhh--ccHHHhhhhhhhhhhccccceee--cCchHHH-HhhhhhhhccccccccCchHHHHHHH-
Confidence 4456666776664 2222 22222235666666666543211 1112223 44566666655442222 12222222
Q ss_pred cccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhc
Q 006426 294 ATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKG 373 (645)
Q Consensus 294 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 373 (645)
+..+.+.++.+.......+. ++.|++++.-.+.-- ......+.+.+|+.|++.... +.. +.. +.+
T Consensus 162 ----l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~-----tlP~~lg~l~~L~~LyL~~Nk-i~~--lPe-f~g 226 (565)
T KOG0472|consen 162 ----LSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLE-----TLPPELGGLESLELLYLRRNK-IRF--LPE-FPG 226 (565)
T ss_pred ----HHHhhccccchhhCCHHHHH--HHHHHhcccchhhhh-----cCChhhcchhhhHHHHhhhcc-ccc--CCC-CCc
Confidence 55666666666655544443 456666655333100 001112334455555554321 111 111 234
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccC
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSP 453 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 453 (645)
|..|++|+++. +++..- .....+++++|..|++..+ .+...+...... .+|+.|++++ +.++..+. .+++
T Consensus 227 cs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdN-klke~Pde~clL---rsL~rLDlSN-N~is~Lp~---sLgn 296 (565)
T KOG0472|consen 227 CSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDN-KLKEVPDEICLL---RSLERLDLSN-NDISSLPY---SLGN 296 (565)
T ss_pred cHHHHHHHhcc-cHHHhh-HHHHhcccccceeeecccc-ccccCchHHHHh---hhhhhhcccC-CccccCCc---cccc
Confidence 56667666665 333321 2233445667777777663 333333222221 5677777776 23333332 2445
Q ss_pred CCCCcEEeccCCC
Q 006426 454 CKSLRSLSIRNCP 466 (645)
Q Consensus 454 ~~~L~~L~l~~~~ 466 (645)
+ .|+.|.+.|++
T Consensus 297 l-hL~~L~leGNP 308 (565)
T KOG0472|consen 297 L-HLKFLALEGNP 308 (565)
T ss_pred c-eeeehhhcCCc
Confidence 5 66677776665
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=6e-10 Score=104.10 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=42.2
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|++++ +.++...-.++.. +..++.|.|.. +++....- .++.++..|++|+|.+|+|+-....++. .+..
T Consensus 275 ~L~~lnlsn-N~i~~i~~~aFe~--~a~l~eL~L~~-N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~ 347 (498)
T KOG4237|consen 275 NLRKLNLSN-NKITRIEDGAFEG--AAELQELYLTR-NKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFS 347 (498)
T ss_pred cceEeccCC-Cccchhhhhhhcc--hhhhhhhhcCc-chHHHHHH-HhhhccccceeeeecCCeeEEEeccccc--ccce
Confidence 556666655 3444444344433 45555555555 34443322 2233456666666666665555444444 5555
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|.+|++-.++
T Consensus 348 l~~l~l~~Np 357 (498)
T KOG4237|consen 348 LSTLNLLSNP 357 (498)
T ss_pred eeeeehccCc
Confidence 6666554433
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=6.2e-08 Score=103.32 Aligned_cols=265 Identities=18% Similarity=0.162 Sum_probs=137.2
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
.+-..|+++.+. ++. ++...+.+++.|.+..+.++... ...++|+.|++.++ .++... ...
T Consensus 201 ~~~~~LdLs~~~-Lts-----LP~~l~~~L~~L~L~~N~Lt~LP-----~lp~~Lk~LdLs~N-~LtsLP-------~lp 261 (788)
T PRK15387 201 NGNAVLNVGESG-LTT-----LPDCLPAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGN-QLTSLP-------VLP 261 (788)
T ss_pred CCCcEEEcCCCC-CCc-----CCcchhcCCCEEEccCCcCCCCC-----CCCCCCcEEEecCC-ccCccc-------Ccc
Confidence 456678877764 321 11112234888888887776532 23466777777665 222110 112
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +.. + ....++|+.|+++++ .++. + ....++|+.|+++++ .+..... ...
T Consensus 262 ~sL~~L~Ls~N~-L~~--L---p~lp~~L~~L~Ls~N-~Lt~--L---P~~p~~L~~LdLS~N-~L~~Lp~------lp~ 322 (788)
T PRK15387 262 PGLLELSIFSNP-LTH--L---PALPSGLCKLWIFGN-QLTS--L---PVLPPGLQELSVSDN-QLASLPA------LPS 322 (788)
T ss_pred cccceeeccCCc-hhh--h---hhchhhcCEEECcCC-cccc--c---cccccccceeECCCC-ccccCCC------Ccc
Confidence 466777776542 221 1 122356777777663 3332 1 112456777777664 2322111 114
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|.+.+| .+..++. ...+|+.|++++|. +.. +....++|+.|++++ +.++. +..+ +.
T Consensus 323 ~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~N~-Ls~-----LP~lp~~L~~L~Ls~-N~L~~--LP~l----~~ 382 (788)
T PRK15387 323 ELCKLWAYNN-QLTSLPT------LPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYN-NRLTS--LPAL----PS 382 (788)
T ss_pred cccccccccC-ccccccc------cccccceEecCCCc-cCC-----CCCCCcccceehhhc-ccccc--Cccc----cc
Confidence 5666666653 2332221 11467777777764 322 111235677777665 33331 1111 22
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+++++ .++... . ..++|+.|++++ +.++... . ...+|+.|++++|+++.. ...+. .+++
T Consensus 383 ~L~~LdLs~N-~Lt~LP-----~-l~s~L~~LdLS~-N~LssIP--~---l~~~L~~L~Ls~NqLt~L-P~sl~--~L~~ 446 (788)
T PRK15387 383 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSG-NRLTSLP--M---LPSGLLSLSVYRNQLTRL-PESLI--HLSS 446 (788)
T ss_pred ccceEEecCC-cccCCC-----C-cccCCCEEEccC-CcCCCCC--c---chhhhhhhhhccCccccc-ChHHh--hccC
Confidence 6778888774 444321 1 135777888877 3555321 1 134677788888776632 22344 5678
Q ss_pred ccEEecCCCCCCCHHHHHHH
Q 006426 589 LQILSLSGCSMVSDKSLGAL 608 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~ 608 (645)
|+.|+|++ +.++...+..+
T Consensus 447 L~~LdLs~-N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEG-NPLSERTLQAL 465 (788)
T ss_pred CCeEECCC-CCCCchHHHHH
Confidence 88888877 44665555544
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.66 E-value=2.6e-08 Score=106.16 Aligned_cols=265 Identities=16% Similarity=0.104 Sum_probs=166.8
Q ss_pred CCCcEEeeccCCCCChHHHH-HHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCc
Q 006426 243 PKLIDLTIESCSSIGNEGLQ-AVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGM 321 (645)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (645)
..-..|+++.+. ++. +. .+ .++|+.|.+.++. ++. +.. .+++|+.|+++++.++... ...+
T Consensus 201 ~~~~~LdLs~~~-Lts--LP~~l---~~~L~~L~L~~N~-Lt~-----LP~-lp~~Lk~LdLs~N~LtsLP-----~lp~ 262 (788)
T PRK15387 201 NGNAVLNVGESG-LTT--LPDCL---PAHITTLVIPDNN-LTS-----LPA-LPPELRTLEVSGNQLTSLP-----VLPP 262 (788)
T ss_pred CCCcEEEcCCCC-CCc--CCcch---hcCCCEEEccCCc-CCC-----CCC-CCCCCcEEEecCCccCccc-----Cccc
Confidence 567788888753 332 11 12 2479999998865 332 111 2356999999999887543 2346
Q ss_pred ccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcC
Q 006426 322 AVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAF 401 (645)
Q Consensus 322 ~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 401 (645)
+|+.|++..+. +... . ....+|+.|+++++. +... ....++|+.|+++++ .++. +.. ...
T Consensus 263 sL~~L~Ls~N~-L~~L--p-----~lp~~L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N-~L~~--Lp~---lp~ 322 (788)
T PRK15387 263 GLLELSIFSNP-LTHL--P-----ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDN-QLAS--LPA---LPS 322 (788)
T ss_pred ccceeeccCCc-hhhh--h-----hchhhcCEEECcCCc-cccc-----cccccccceeECCCC-cccc--CCC---Ccc
Confidence 88888887763 2211 0 113578899998753 4422 123578999999984 5543 221 134
Q ss_pred CCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCC
Q 006426 402 SLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCP 481 (645)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 481 (645)
+|+.|.+.++. ++..+ . ...+|+.|++++ +.+..++.. .++|+.|++++|. +.. +....+
T Consensus 323 ~L~~L~Ls~N~-L~~LP--~----lp~~Lq~LdLS~-N~Ls~LP~l------p~~L~~L~Ls~N~-L~~-----LP~l~~ 382 (788)
T PRK15387 323 ELCKLWAYNNQ-LTSLP--T----LPSGLQELSVSD-NQLASLPTL------PSELYKLWAYNNR-LTS-----LPALPS 382 (788)
T ss_pred cccccccccCc-ccccc--c----cccccceEecCC-CccCCCCCC------Ccccceehhhccc-ccc-----Cccccc
Confidence 68888888753 33221 1 115899999998 455554322 3578889888765 332 112336
Q ss_pred CCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 006426 482 QLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCP 561 (645)
Q Consensus 482 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~ 561 (645)
+|+.|+++++ .++.- .. .+++|+.|+++++ .++..+ .+ ..+|+.|++++ ++++..+ .-..+++
T Consensus 383 ~L~~LdLs~N-~Lt~L--P~----l~s~L~~LdLS~N-~LssIP--~l----~~~L~~L~Ls~-NqLt~LP--~sl~~L~ 445 (788)
T PRK15387 383 GLKELIVSGN-RLTSL--PV----LPSELKELMVSGN-RLTSLP--ML----PSGLLSLSVYR-NQLTRLP--ESLIHLS 445 (788)
T ss_pred ccceEEecCC-cccCC--CC----cccCCCEEEccCC-cCCCCC--cc----hhhhhhhhhcc-CcccccC--hHHhhcc
Confidence 8999999884 45421 11 1238999999995 565422 11 34788899988 5777432 2233689
Q ss_pred cCCeeeecCCCCChHHHHHHH
Q 006426 562 LLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 562 ~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+|+.|++++|++++..+..+.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCeEECCCCCCCchHHHHHH
Confidence 999999999999987766663
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.65 E-value=3.6e-08 Score=104.57 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=106.4
Q ss_pred cCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhh
Q 006426 346 HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLN 425 (645)
Q Consensus 346 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (645)
..-++|++|+|+|...+.......++..+|+|+.|.+.+. .+....+..++.++|+|..|+|++++--.-.|...+
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~L--- 194 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRL--- 194 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcHHHhcc---
Confidence 3447899999988766666667788888999999999984 555555888888899999999998643222333222
Q ss_pred cCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHH-HH---HHHhcCCCCcEEEecCCCCCCccchHH
Q 006426 426 CGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDAS-LA---VLGKLCPQLQNVDLSGLQGVTDAGFLP 501 (645)
Q Consensus 426 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~---~l~~~~~~L~~L~l~~~~~i~~~~~~~ 501 (645)
++|+.|.+.+...-....+. .+-.+++|+.||++......+.. +. .....+|+|+.|+.++ +.++.+.+..
T Consensus 195 --knLq~L~mrnLe~e~~~~l~--~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ 269 (699)
T KOG3665|consen 195 --KNLQVLSMRNLEFESYQDLI--DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEE 269 (699)
T ss_pred --ccHHHHhccCCCCCchhhHH--HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHH
Confidence 77777777664322211111 24468899999998765444331 11 1223478999999887 7888777777
Q ss_pred HHhhcccCceEEEc
Q 006426 502 VLESCEAGLAKVNL 515 (645)
Q Consensus 502 l~~~~~~~L~~L~l 515 (645)
+...-| +|+.+..
T Consensus 270 ll~sH~-~L~~i~~ 282 (699)
T KOG3665|consen 270 LLNSHP-NLQQIAA 282 (699)
T ss_pred HHHhCc-cHhhhhh
Confidence 776554 5555443
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=100.96 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=88.7
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
.+|++|+|+|...+.......++..+|.|++|.+.+ ..+..+.|..+..+.| +|.+|||+++ ++++. ..+.. +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFp-NL~sLDIS~T-nI~nl--~GIS~--L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFP-NLRSLDISGT-NISNL--SGISR--L 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccC-ccceeecCCC-CccCc--HHHhc--c
Confidence 455666666555555555666666667777777766 3444444666666665 7777777764 44432 22333 6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH--HHHHHHh--cCCCCccEEecCCCCCCCHHHHHHHHH
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF--GIASLAH--GNYLNLQILSLSGCSMVSDKSLGALRK 610 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~--~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~ 610 (645)
++|+.|.+.+-+--+...+..++ ++.+|+.||+|.....+. .+....+ ..+|+|+.|+.++ ..+++..++.+..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~ 272 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLN 272 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHH
Confidence 66777666553222223344444 467777777776542221 1222221 3567777777776 5566666666666
Q ss_pred hccccccccccc
Q 006426 611 LGQTLLGLNLQH 622 (645)
Q Consensus 611 ~~~~L~~L~l~~ 622 (645)
.-|+|+.+.+-+
T Consensus 273 sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 273 SHPNLQQIAALD 284 (699)
T ss_pred hCccHhhhhhhh
Confidence 555566555443
No 30
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.58 E-value=1.8e-08 Score=67.26 Aligned_cols=39 Identities=41% Similarity=0.549 Sum_probs=33.3
Q ss_pred cccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhh
Q 006426 65 SIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNI 104 (645)
Q Consensus 65 ~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~ 104 (645)
+|.+||+|++.+||+||+ ..|+.+++.|||+|++++.+.
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 577899999999999999 999999999999999998663
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.52 E-value=5.7e-07 Score=96.68 Aligned_cols=216 Identities=16% Similarity=0.188 Sum_probs=118.8
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +..... .+ .++|+.|+++++ .+.. +..- ...+|+.|+++++ .+.... . ...+
T Consensus 220 ~nL~~L~Ls~N~-LtsLP~-~l---~~~L~~L~Ls~N-~L~~--LP~~--l~s~L~~L~Ls~N-~L~~LP--~---~l~~ 283 (754)
T PRK15370 220 GNIKTLYANSNQ-LTSIPA-TL---PDTIQEMELSIN-RITE--LPER--LPSALQSLDLFHN-KISCLP--E---NLPE 283 (754)
T ss_pred cCCCEEECCCCc-cccCCh-hh---hccccEEECcCC-ccCc--CChh--HhCCCCEEECcCC-ccCccc--c---ccCC
Confidence 467777777643 332111 11 247888888885 3432 1111 1357888888754 343221 1 1125
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|++++| .++.++.. ..++|+.|++++|. ++... . ...++|+.|++++| .++. + ....++
T Consensus 284 sL~~L~Ls~N-~Lt~LP~~-----lp~sL~~L~Ls~N~-Lt~LP-~---~l~~sL~~L~Ls~N-~Lt~--L---P~~l~~ 346 (754)
T PRK15370 284 ELRYLSVYDN-SIRTLPAH-----LPSGITHLNVQSNS-LTALP-E---TLPPGLKTLEAGEN-ALTS--L---PASLPP 346 (754)
T ss_pred CCcEEECCCC-ccccCccc-----chhhHHHHHhcCCc-cccCC-c---cccccceeccccCC-cccc--C---ChhhcC
Confidence 7888888875 34433221 12467888888765 32111 0 12367888888774 3331 1 111123
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH--HHHHHHhcCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF--GIASLAHGNY 586 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~ 586 (645)
+|+.|++++| .++.... .+ .++|+.|+|++| +++.... .+. ..|+.|++++|++... .+..+. ..+
T Consensus 347 sL~~L~Ls~N-~L~~LP~-~l----p~~L~~LdLs~N-~Lt~LP~-~l~---~sL~~LdLs~N~L~~LP~sl~~~~-~~~ 414 (754)
T PRK15370 347 ELQVLDVSKN-QITVLPE-TL----PPTITTLDVSRN-ALTNLPE-NLP---AALQIMQASRNNLVRLPESLPHFR-GEG 414 (754)
T ss_pred cccEEECCCC-CCCcCCh-hh----cCCcCEEECCCC-cCCCCCH-hHH---HHHHHHhhccCCcccCchhHHHHh-hcC
Confidence 8888888885 4543221 11 357888888885 5553221 121 3588888888876532 233333 256
Q ss_pred CCccEEecCCCCCCCHHHHHHHHH
Q 006426 587 LNLQILSLSGCSMVSDKSLGALRK 610 (645)
Q Consensus 587 ~~L~~L~l~~c~~l~~~~~~~~~~ 610 (645)
+++..|++.+ +.++...+..+..
T Consensus 415 ~~l~~L~L~~-Npls~~tl~~L~~ 437 (754)
T PRK15370 415 PQPTRIIVEY-NPFSERTIQNMQR 437 (754)
T ss_pred CCccEEEeeC-CCccHHHHHHHHH
Confidence 7888888887 4466665555543
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.41 E-value=1.8e-07 Score=59.98 Aligned_cols=34 Identities=41% Similarity=0.639 Sum_probs=32.3
Q ss_pred CCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 69 LPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 69 LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
||+|++..||.||+ .+|+.++++|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 99999999999999999855
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=9.2e-07 Score=75.65 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=64.9
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCC-CCChHHHHHHHhcCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC-AVTDFGIASLAHGNYL 587 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~ 587 (645)
.++.++=+++ .+..+++..+.. ++.++.|.+.+|..+.|.++..+..-.++|+.|+|++| +|++.++..+. +++
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~--~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL--KLK 176 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH--Hhh
Confidence 5677777774 677777777766 78888888888888888888887776778888888877 47887777777 777
Q ss_pred CccEEecCCCCC
Q 006426 588 NLQILSLSGCSM 599 (645)
Q Consensus 588 ~L~~L~l~~c~~ 599 (645)
+|+.|.+.+-+.
T Consensus 177 nLr~L~l~~l~~ 188 (221)
T KOG3864|consen 177 NLRRLHLYDLPY 188 (221)
T ss_pred hhHHHHhcCchh
Confidence 777777776443
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.18 E-value=6.7e-06 Score=88.60 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=119.6
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +..... .+ ..+|+.|++++ +.++. +.. ...++|+.|+++++ .++.... ...+
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~-~l---~s~L~~L~Ls~-N~L~~--LP~--~l~~sL~~L~Ls~N-~Lt~LP~-----~lp~ 304 (754)
T PRK15370 241 DTIQEMELSINR-ITELPE-RL---PSALQSLDLFH-NKISC--LPE--NLPEELRYLSVYDN-SIRTLPA-----HLPS 304 (754)
T ss_pred ccccEEECcCCc-cCcCCh-hH---hCCCCEEECcC-CccCc--ccc--ccCCCCcEEECCCC-ccccCcc-----cchh
Confidence 468888888754 432211 12 25799999987 45542 221 11358999999986 3432211 1125
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|+++++. +..++.. ..++|+.|++++|. ++... . ..+++|+.|+++++ .++. + ....++
T Consensus 305 sL~~L~Ls~N~-Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~---~l~~sL~~L~Ls~N-~L~~--L---P~~lp~ 367 (754)
T PRK15370 305 GITHLNVQSNS-LTALPET-----LPPGLKTLEAGENA-LTSLP-A---SLPPELQVLDVSKN-QITV--L---PETLPP 367 (754)
T ss_pred hHHHHHhcCCc-cccCCcc-----ccccceeccccCCc-cccCC-h---hhcCcccEEECCCC-CCCc--C---ChhhcC
Confidence 78889888843 4433221 24789999999885 33211 1 12479999999985 4442 1 111234
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHH--HHHHHHhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDA--SLMAIADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~--~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+|+.|+|++| .++..+. .+. ..|+.|++++ +++... .+..+...++.+..|++.+|++....+..+.
T Consensus 368 ~L~~LdLs~N-~Lt~LP~-~l~----~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 368 TITTLDVSRN-ALTNLPE-NLP----AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred CcCEEECCCC-cCCCCCH-hHH----HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 8999999996 5554322 222 3688999998 466532 2344445678999999999999876665543
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=4.1e-06 Score=75.99 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=100.5
Q ss_pred CccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCH-HHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSD-NGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
-++-+.+.+|.--+......+...+..++++++.+ +.+++ ..+..+.+++|.|+.|+++.+.--.+.+-.. ....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 45566666665344445666777788889999988 45544 5677788888888888888654322222211 0115
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCC----CCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHh
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCP----GFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLE 504 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 504 (645)
+|+.|.+.+.. +. +......+..+|.++.|+++.|. ++.+.....+ -|.+++|++.+|...-......+.+
T Consensus 122 nl~~lVLNgT~-L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~---s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 122 NLRVLVLNGTG-LS-WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW---STEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred ceEEEEEcCCC-CC-hhhhhhhhhcchhhhhhhhccchhhhhcccccccccc---chhhhhhhcCCcHHHHHHHHHhHHh
Confidence 56666555411 11 00011113345555555555442 1122222211 1344445444443222222233333
Q ss_pred hcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCCh
Q 006426 505 SCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 505 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~ 575 (645)
..| ++..+.+..|+--+....+.. . ..|.+--|+|+. +++.+.....-...++.|..|.++++++.+
T Consensus 197 ~Fp-nv~sv~v~e~PlK~~s~ek~s-e-~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFP-NVNSVFVCEGPLKTESSEKGS-E-PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcc-cchheeeecCcccchhhcccC-C-CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccc
Confidence 333 555555555421111111111 1 244444555544 344433222222345666666666665444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=4.3e-07 Score=82.17 Aligned_cols=127 Identities=23% Similarity=0.223 Sum_probs=64.0
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
..|+++++++ +.++.+... +.-.|.++.|+++.|.-..-..+. .+++|..|+++++.--.-+|+..= .+
T Consensus 284 q~LtelDLS~-N~I~~iDES---vKL~Pkir~L~lS~N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~Gwh~K---LG 352 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDES---VKLAPKLRRLILSQNRIRTVQNLA----ELPQLQLLDLSGNLLAECVGWHLK---LG 352 (490)
T ss_pred hhhhhccccc-cchhhhhhh---hhhccceeEEeccccceeeehhhh----hcccceEeecccchhHhhhhhHhh---hc
Confidence 5666677666 222222111 223567777777766533222222 236777777776322222233221 12
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA 572 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~ 572 (645)
+++.|.++++ .+.+ +..+.+ +-+|..|++++ ++|.......-..++|.|+++.+.+|+
T Consensus 353 -NIKtL~La~N-~iE~--LSGL~K--LYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 -NIKTLKLAQN-KIET--LSGLRK--LYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -CEeeeehhhh-hHhh--hhhhHh--hhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 6667766662 3322 222323 45667777766 455543333333456777777777775
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.14 E-value=5.5e-08 Score=91.46 Aligned_cols=105 Identities=22% Similarity=0.143 Sum_probs=65.5
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|..|++++ +.+.+.+.+ +.. +..|+.|+++. +.+... ....-....|+.+-.++++|.......+. .+.+
T Consensus 436 kLt~L~L~N-N~Ln~LP~e-~~~--lv~Lq~LnlS~-NrFr~l--P~~~y~lq~lEtllas~nqi~~vd~~~l~--nm~n 506 (565)
T KOG0472|consen 436 KLTFLDLSN-NLLNDLPEE-MGS--LVRLQTLNLSF-NRFRML--PECLYELQTLETLLASNNQIGSVDPSGLK--NMRN 506 (565)
T ss_pred cceeeeccc-chhhhcchh-hhh--hhhhheecccc-cccccc--hHHHhhHHHHHHHHhccccccccChHHhh--hhhh
Confidence 888999988 355554433 333 55699999987 454332 11111234556666666776555444444 6778
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhcccccccccccccCC
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l 626 (645)
|..|++.+ +.+ ..++.+...|.+|++|++.| +.+
T Consensus 507 L~tLDL~n-Ndl--q~IPp~LgnmtnL~hLeL~g-Npf 540 (565)
T KOG0472|consen 507 LTTLDLQN-NDL--QQIPPILGNMTNLRHLELDG-NPF 540 (565)
T ss_pred cceeccCC-Cch--hhCChhhccccceeEEEecC-Ccc
Confidence 88888877 444 34666667778888888888 434
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=2.5e-06 Score=73.09 Aligned_cols=105 Identities=27% Similarity=0.412 Sum_probs=79.7
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccc
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQT 614 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 614 (645)
.++.++-+++ .|..+++..+. +++.++.|.+.+|. +.|.++..+. ...++|+.|+|++|+.||+.++..+... ++
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~l-kn 177 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKL-KN 177 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHh-hh
Confidence 5677777774 77778877774 68888888888884 8888888887 4778888888888888888888887654 66
Q ss_pred ccccccccccCCCh--HHHHHHHHhcccCccC
Q 006426 615 LLGLNLQHCNAIST--NSVDMLVEQLWRCDVL 644 (645)
Q Consensus 615 L~~L~l~~C~~l~~--~~~~~~~~~l~~~~~l 644 (645)
|+.|.+++=+.+.. .....+.+.||.|+++
T Consensus 178 Lr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 178 LRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred hHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 88888888555533 2355667788888875
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1.3e-06 Score=75.72 Aligned_cols=84 Identities=27% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH-HHHHHHhcCCCCccEEecCCCCCCCHH-H-HHHHHH
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF-GIASLAHGNYLNLQILSLSGCSMVSDK-S-LGALRK 610 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~~-~-~~~~~~ 610 (645)
++.|+.|++++ |.++...- .+...+|+|++|++++|+|.+. .+..+. .+++|+.|++.+++ +++. . -..+..
T Consensus 63 L~~L~~L~L~~-N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~--~l~~L~~L~L~~NP-v~~~~~YR~~vi~ 137 (175)
T PF14580_consen 63 LPRLKTLDLSN-NRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLS--SLPKLRVLSLEGNP-VCEKKNYRLFVIY 137 (175)
T ss_dssp -TT--EEE--S-S---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGG--G-TT--EEE-TT-G-GGGSTTHHHHHHH
T ss_pred hhhhhhcccCC-CCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHH--cCCCcceeeccCCc-ccchhhHHHHHHH
Confidence 56677777766 45554321 2223466777777777765442 233333 56677777777644 3321 1 223444
Q ss_pred hccccccccccc
Q 006426 611 LGQTLLGLNLQH 622 (645)
Q Consensus 611 ~~~~L~~L~l~~ 622 (645)
.+|+|+.||-..
T Consensus 138 ~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 138 KLPSLKVLDGQD 149 (175)
T ss_dssp H-TT-SEETTEE
T ss_pred HcChhheeCCEE
Confidence 566677766554
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=4.7e-05 Score=68.35 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=72.3
Q ss_pred CCCCCcEEeccCCCC--CCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHh----hcccCceEEEccCCCCCChHHH
Q 006426 453 PCKSLRSLSIRNCPG--FGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLE----SCEAGLAKVNLSGCVNLTDKVV 526 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~ 526 (645)
.-|.|+++....|.. .+........+.-.+|+.+.+.. +.|.++|+..++- .|. +|+.|+|.. +.++..+-
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~-~LevLDlqD-Ntft~~gS 231 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSH-SLEVLDLQD-NTFTLEGS 231 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhC-cceeeeccc-cchhhhhH
Confidence 346666666555531 11122222222224677777766 5666666544432 133 677777766 34443333
Q ss_pred HHHHHh--hCCCccEEecCCCCCCCHHHHHHHHh-----cCCcCCeeeecCCC-----CChHHHHHHHhcCCCCccEEec
Q 006426 527 STMAEL--HGWTLEMLNLDGCRKISDASLMAIAD-----NCPLLCDLDVSKCA-----VTDFGIASLAHGNYLNLQILSL 594 (645)
Q Consensus 527 ~~l~~~--~~~~L~~L~l~~c~~l~~~~l~~l~~-----~~~~L~~L~l~~~~-----i~~~~~~~l~~~~~~~L~~L~l 594 (645)
..++.. .++.|+.|.+..| -++..+...+.. ..|+|+.|...+|. |.+.....+....+|-|..|.+
T Consensus 232 ~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred HHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 333221 2456677777776 444444333332 23677777776664 2232333444345666666666
Q ss_pred CCCCCCC
Q 006426 595 SGCSMVS 601 (645)
Q Consensus 595 ~~c~~l~ 601 (645)
.+ +.+.
T Consensus 311 ng-Nr~~ 316 (388)
T COG5238 311 NG-NRIK 316 (388)
T ss_pred cc-Ccch
Confidence 65 3343
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=1.3e-06 Score=75.79 Aligned_cols=136 Identities=21% Similarity=0.184 Sum_probs=51.2
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
.++.++++|++.++. ++. ++.+...+.+|+.|+++++.-.+-+++..+ + .|+.|++++ +.+++... .+..
T Consensus 16 ~n~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L----~-~L~~L~L~~-N~I~~i~~-~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLEGLPGL----P-RLKTLDLSN-NRISSISE-GLDK 85 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT--------T-T--EEE--S-S---S-CH-HHHH
T ss_pred ccccccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCccccCccCh----h-hhhhcccCC-CCCCcccc-chHH
Confidence 345678999999976 332 344444568999999999533333444443 2 999999999 57776432 2333
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHH-HHHHhcCCCCccEEecCCCCC
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI-ASLAHGNYLNLQILSLSGCSM 599 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~~~L~~L~l~~c~~ 599 (645)
.+|+|+.|++++ +++.+..--.....+++|+.|++.+|++++..- ..+.-..+|+|+.|+-.....
T Consensus 86 -~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 86 -NLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp -H-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred -hCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 489999999998 677653222223469999999999998765422 222113889999998766443
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.9e-06 Score=78.11 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=77.2
Q ss_pred HHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHH
Q 006426 393 LISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDAS 472 (645)
Q Consensus 393 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 472 (645)
+..+...++.++.+++.++..-....+..++.+. |.|+.|+|+....-.++...+ ....+|++|-+.|.. +....
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~l-P~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~ 137 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQL-PALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQ 137 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcC-ccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhh
Confidence 4444444555555555543222222233333222 555555555433222222221 123455555554432 34444
Q ss_pred HHHHHhcCCCCcEEEecCCC----CCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCC
Q 006426 473 LAVLGKLCPQLQNVDLSGLQ----GVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKI 548 (645)
Q Consensus 473 l~~l~~~~~~L~~L~l~~~~----~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l 548 (645)
...+....|.++.|+++.++ .++++...... +.+++|+...|....-.....+.. .+|++..+-+-.|+ +
T Consensus 138 ~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s----~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-l 211 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS----TEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-L 211 (418)
T ss_pred hhhhhhcchhhhhhhhccchhhhhccccccccccc----hhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-c
Confidence 44444444555555444321 12222221110 134444444443332233333333 34555555554432 2
Q ss_pred CHHHHHHHHhcCCcCCeeeecCCCCCh-HHHHHHHhcCCCCccEEecCCCC
Q 006426 549 SDASLMAIADNCPLLCDLDVSKCAVTD-FGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 549 ~~~~l~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
.+.....-.+.+|.+.-|.++.++|.+ ..+.++. +++.|..|.+.+.+
T Consensus 212 K~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln--~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 212 KTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN--GFPQLVDLRVSENP 260 (418)
T ss_pred cchhhcccCCCCCcchhhhhcccccccHHHHHHHc--CCchhheeeccCCc
Confidence 222222222334445555555555433 2333333 55555555555433
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=2.4e-06 Score=77.49 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
-..|+++++++|. ++ .++.-.+..|.++.|+++. +.+...+- +...+ +|+.|+++++ .++...-. -. .
T Consensus 283 Wq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~-N~i~~v~n---La~L~-~L~~LDLS~N-~Ls~~~Gw-h~--K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQ-NRIRTVQN---LAELP-QLQLLDLSGN-LLAECVGW-HL--K 350 (490)
T ss_pred Hhhhhhccccccc-hh--hhhhhhhhccceeEEeccc-cceeeehh---hhhcc-cceEeecccc-hhHhhhhh-Hh--h
Confidence 3567788888764 21 2222233458888888887 34432221 11222 7888888873 44432211 11 3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH-HHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF-GIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+.+++.|.+++ +.+.+ +..+. .+-+|..||+++|+|... .+..+. .+|.|+.+.+.+++
T Consensus 351 LGNIKtL~La~-N~iE~--LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQ-NKIET--LSGLR-KLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhh-hhHhh--hhhhH-hhhhheeccccccchhhHHHhcccc--cccHHHHHhhcCCC
Confidence 66888888877 45543 22222 356788888888886543 344444 78888888888755
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.96 E-value=1.5e-06 Score=81.82 Aligned_cols=91 Identities=22% Similarity=0.205 Sum_probs=63.8
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHH
Q 006426 524 KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDK 603 (645)
Q Consensus 524 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 603 (645)
-+...+.. +++|++|++++ ++++...-..+ ++...+++|.|..|+|....-..+. .+..|+.|+|++ ++||-.
T Consensus 265 cP~~cf~~--L~~L~~lnlsn-N~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~~~f~--~ls~L~tL~L~~-N~it~~ 337 (498)
T KOG4237|consen 265 CPAKCFKK--LPNLRKLNLSN-NKITRIEDGAF-EGAAELQELYLTRNKLEFVSSGMFQ--GLSGLKTLSLYD-NQITTV 337 (498)
T ss_pred ChHHHHhh--cccceEeccCC-Cccchhhhhhh-cchhhhhhhhcCcchHHHHHHHhhh--ccccceeeeecC-CeeEEE
Confidence 33344444 88999999988 68877654444 4678899999999887665555555 778889999988 778766
Q ss_pred HHHHHHHhccccccccccc
Q 006426 604 SLGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 604 ~~~~~~~~~~~L~~L~l~~ 622 (645)
....+... .+|..|++-.
T Consensus 338 ~~~aF~~~-~~l~~l~l~~ 355 (498)
T KOG4237|consen 338 APGAFQTL-FSLSTLNLLS 355 (498)
T ss_pred eccccccc-ceeeeeehcc
Confidence 55555444 4477777755
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=0.00018 Score=64.76 Aligned_cols=173 Identities=23% Similarity=0.248 Sum_probs=108.8
Q ss_pred ccCCCCCcEEeccCCCCCCHHH-------HHHHH-----hcCCCCcEEEecCCCCCCc---cchHHHHhhcccCceEEEc
Q 006426 451 VSPCKSLRSLSIRNCPGFGDAS-------LAVLG-----KLCPQLQNVDLSGLQGVTD---AGFLPVLESCEAGLAKVNL 515 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~~~~~~~~-------l~~l~-----~~~~~L~~L~l~~~~~i~~---~~~~~l~~~~~~~L~~L~l 515 (645)
++....|++|.+++|. ++... +..++ ..-|.|+.+.... +.+.. .-....++.-. .|+.+.+
T Consensus 116 is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~-~lk~vki 192 (388)
T COG5238 116 ISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHE-NLKEVKI 192 (388)
T ss_pred HhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhc-CceeEEe
Confidence 4556778888887774 32211 11221 1248899998877 33322 22223333333 7899999
Q ss_pred cCCCCCChHHHHHHHH---hhCCCccEEecCCCCCCCHHHHHHHHh---cCCcCCeeeecCCCCChHHHHHHHh----cC
Q 006426 516 SGCVNLTDKVVSTMAE---LHGWTLEMLNLDGCRKISDASLMAIAD---NCPLLCDLDVSKCAVTDFGIASLAH----GN 585 (645)
Q Consensus 516 ~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~----~~ 585 (645)
.. +.+..+++..+.- .++.+|+.|+|.. |.++-.+-..++. ..+.|++|.+..|-++..|...+.. ..
T Consensus 193 ~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~ 270 (388)
T COG5238 193 QQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKF 270 (388)
T ss_pred ee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhc
Confidence 87 5777776554322 2578999999988 5777666555543 3577999999999877766655542 37
Q ss_pred CCCccEEecCCCCC----CCHHHHHHHH-HhcccccccccccccCCChH
Q 006426 586 YLNLQILSLSGCSM----VSDKSLGALR-KLGQTLLGLNLQHCNAISTN 629 (645)
Q Consensus 586 ~~~L~~L~l~~c~~----l~~~~~~~~~-~~~~~L~~L~l~~C~~l~~~ 629 (645)
.|+|..|-+.++.. |.+.+++.+. ...|-|..|.+.+ |+++..
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 89999998877332 2223344433 3456677888888 888754
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=5.7e-05 Score=82.97 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=35.3
Q ss_pred hCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCC
Q 006426 215 GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCR 280 (645)
Q Consensus 215 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 280 (645)
.+++|++|-+.++..--......++..+|.|++|++++|..... ++.....+-+|+.|+++++.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCCC
Confidence 56677777777653101111223345578888888887543222 22223336667888877654
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.58 E-value=3.2e-05 Score=84.89 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=40.0
Q ss_pred hhCCCCcEEeeccCCC-CChHHHHHHHhcCCCccEEEecCCCCcCh--HHHHHHHHhcccccceeeeccccCCc
Q 006426 240 KNCPKLIDLTIESCSS-IGNEGLQAVGRFCPNLKSISIKDCRLVGD--QGIASLLSSATYSLEKVKLQRLNITD 310 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~L~~L~L~~~~~~~ 310 (645)
..++.|++|-+.+... +..... .+...+|.|+.||+++|..... ..+..+.. |+.|+++++.+..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~-----LryL~L~~t~I~~ 609 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH-----LRYLDLSDTGISH 609 (889)
T ss_pred CCCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhh-----hhcccccCCCccc
Confidence 3467899998877532 222222 2234489999999998765432 23333332 7888888777663
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=1.4e-05 Score=81.44 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=12.0
Q ss_pred CCccceEEeCCCCCCCHHHHHHH
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISF 396 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~ 396 (645)
+.+|+.|.+.+|+--+..|+..+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHH
Confidence 45666666666544344444443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=8.2e-06 Score=83.15 Aligned_cols=207 Identities=22% Similarity=0.185 Sum_probs=98.6
Q ss_pred HHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcccc
Q 006426 367 LEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNL 446 (645)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 446 (645)
+..+...+++++.|.+-..+.-...+...++. +..|+.|.+.+|+.-+..|+..+- .+|++|.-.+- ++....
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~~~GL~~lr----~qLe~LIC~~S--l~Al~~ 148 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLSTAKGLQELR----HQLEKLICHNS--LDALRH 148 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhhhhhhHHHH----Hhhhhhhhhcc--HHHHHH
Confidence 34445556677777765533322222333443 788999999988655544444332 44555432220 000000
Q ss_pred c----cccccC---CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCC
Q 006426 447 G----VRSVSP---CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCV 519 (645)
Q Consensus 447 ~----~~~~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 519 (645)
. ...+.+ -..|.+.+.+.|. -..++.-.+.+|.|+.|+|++ +++++.. .+..|+ .|++|||+. +
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsyN~---L~~mD~SLqll~ale~LnLsh-Nk~~~v~---~Lr~l~-~LkhLDlsy-N 219 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSYNR---LVLMDESLQLLPALESLNLSH-NKFTKVD---NLRRLP-KLKHLDLSY-N 219 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcchhh---HHhHHHHHHHHHHhhhhccch-hhhhhhH---HHHhcc-ccccccccc-c
Confidence 0 000000 0233333444332 112222233447777777777 3443322 333344 777777776 3
Q ss_pred CCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHH-HHHHHhcCCCCccEEecCCCC
Q 006426 520 NLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFG-IASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 520 ~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~ 598 (645)
.+...+-..... + .|+.|+|.| |.++. +..+ +++.+|+.||+++|-|.+.. +.-+- .+..|++|+|.|++
T Consensus 220 ~L~~vp~l~~~g--c-~L~~L~lrn-N~l~t--L~gi-e~LksL~~LDlsyNll~~hseL~pLw--sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 220 CLRHVPQLSMVG--C-KLQLLNLRN-NALTT--LRGI-ENLKSLYGLDLSYNLLSEHSELEPLW--SLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccccccchhh--h-hheeeeecc-cHHHh--hhhH-HhhhhhhccchhHhhhhcchhhhHHH--HHHHHHHHhhcCCc
Confidence 444332222222 2 477777766 34432 3333 35677777777777554432 12221 33466777777644
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.24 E-value=0.00081 Score=66.13 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=27.8
Q ss_pred cCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCC
Q 006426 373 GCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGI 441 (645)
Q Consensus 373 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 441 (645)
.|++++.|++++| .++. +. .-.++|+.|.+.+|..++...- .+ .++|++|.+++|..+
T Consensus 50 ~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~--~L---P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTLPG--SI---PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccCCc--hh---hhhhhheEccCcccc
Confidence 3566777777765 2222 11 1123466666666554432211 01 145666666655443
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.10 E-value=4e-05 Score=53.99 Aligned_cols=58 Identities=31% Similarity=0.352 Sum_probs=29.5
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
+|++|++++| +++..... .+.++++|++|++++|.+.......+. .+++|+.|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTT-TTTTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcCC
Confidence 4555555553 44432211 223456666666666655544333444 5666666666653
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.80 E-value=0.0011 Score=36.99 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=14.2
Q ss_pred cccccccccccccCCChHHHHHHH
Q 006426 612 GQTLLGLNLQHCNAISTNSVDMLV 635 (645)
Q Consensus 612 ~~~L~~L~l~~C~~l~~~~~~~~~ 635 (645)
|++|+.|+|++|++||+.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345666666666666666665554
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.79 E-value=0.0012 Score=67.64 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=27.0
Q ss_pred ccEEeeCCCCCCChHHHHHHh---hcCCccceEEeCCCCCCCHHHHHHHHHhcC
Q 006426 351 LKSLTITSCMGVTDLGLEAVG---KGCPNLKQFCLRKCAFLSDNGLISFAKAAF 401 (645)
Q Consensus 351 L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 401 (645)
+..+.+.+|. +.+.+.+.+. ...+.|+.|++++ +.+.+.+...+...++
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~ 140 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLR 140 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcc
Confidence 4455555543 4444444333 3456677777777 3566776666655443
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.60 E-value=0.0028 Score=68.16 Aligned_cols=36 Identities=31% Similarity=0.275 Sum_probs=16.2
Q ss_pred cCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 559 NCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
.+++|+.|+|++|++.......+. .+++|+.|++++
T Consensus 464 ~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~ 499 (623)
T PLN03150 464 SITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNG 499 (623)
T ss_pred CCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcC
Confidence 344455555555444433333333 444455555544
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.57 E-value=0.0018 Score=63.70 Aligned_cols=137 Identities=20% Similarity=0.332 Sum_probs=82.6
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
..+.++++|++++|. +.... ...++|++|.+++|..++.. ....|++|++|++++|..+.. +
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nLtsL-----P~~LP~nLe~L~Ls~Cs~L~s-----L-- 110 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNLTTL-----PGSIPEGLEKLTVCHCPEISG-----L-- 110 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCcccC-----CchhhhhhhheEccCcccccc-----c--
Confidence 347889999999884 33221 23357999999888765321 111234899999998866542 1
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHHhcCC-CCccEEecCCCCCCCHHHHHHHH
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLAHGNY-LNLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
.++|+.|++.+ +.... +..+ -++|++|.+.+++ .....+. ..+ ++|+.|++++|..+. ++ .
T Consensus 111 --P~sLe~L~L~~-n~~~~--L~~L---PssLk~L~I~~~n~~~~~~lp----~~LPsSLk~L~Is~c~~i~---LP--~ 173 (426)
T PRK15386 111 --PESVRSLEIKG-SATDS--IKNV---PNGLTSLSINSYNPENQARID----NLISPSLKTLSLTGCSNII---LP--E 173 (426)
T ss_pred --ccccceEEeCC-CCCcc--cccC---cchHhheeccccccccccccc----cccCCcccEEEecCCCccc---Cc--c
Confidence 24788888864 33322 2222 2568888886543 1111111 122 589999999988653 11 1
Q ss_pred Hhcccccccccccc
Q 006426 610 KLGQTLLGLNLQHC 623 (645)
Q Consensus 610 ~~~~~L~~L~l~~C 623 (645)
..+.+|+.|.++.+
T Consensus 174 ~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 KLPESLQSITLHIE 187 (426)
T ss_pred cccccCcEEEeccc
Confidence 24568999998764
No 56
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.54 E-value=0.0016 Score=59.98 Aligned_cols=40 Identities=35% Similarity=0.498 Sum_probs=34.9
Q ss_pred CCcccCCCHHHHHHHHhh-----cCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRR-----LDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~-----L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
...|..||||||..||+. |+ .+++.++++|||.|+..+..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHcC
Confidence 456889999999999985 55 89999999999999998755
No 57
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.54 E-value=0.0015 Score=63.45 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=36.5
Q ss_pred CcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 64 VSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 64 ~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.+|+.||+|+|..|..+|+..-|+++++.|||.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4688999999999999998788999999999999998754
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.50 E-value=0.00016 Score=50.93 Aligned_cols=59 Identities=29% Similarity=0.262 Sum_probs=45.2
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccc
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHC 623 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 623 (645)
|+|++|++++|+++......+. .+++|+.|++++ +.++...... ...+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCC
Confidence 6899999999998776555665 889999999997 5576433323 345688999999995
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.43 E-value=0.0032 Score=40.42 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=14.6
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
+|++|++++ +++++. .....++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~-N~i~~l--~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSN-NQITDL--PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETS-SS-SSH--GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccC-CCCccc--CchHhCCCCCCEEEecCCCCC
Confidence 444555544 244432 121234455555555555444
No 60
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.40 E-value=0.0012 Score=67.57 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=133.2
Q ss_pred CcEEeccccCCCC-ccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCC----CCcEEEecCCCCCCccchHHHHh
Q 006426 430 LKALSLVSCLGIK-DQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCP----QLQNVDLSGLQGVTDAGFLPVLE 504 (645)
Q Consensus 430 L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~i~~~~~~~l~~ 504 (645)
+..|.+.+|..-. ........+...+.|..|+++++. +++.....+....+ .|+.|.+..| .++..|...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 6667777765322 222223335678899999999987 66777776655433 4666777774 556666555443
Q ss_pred hc--ccCceEEEccCCCCCChHHHHHHHH---h---hCCCccEEecCCCCCCCHHHHHHHH---hcCCc-CCeeeecCCC
Q 006426 505 SC--EAGLAKVNLSGCVNLTDKVVSTMAE---L---HGWTLEMLNLDGCRKISDASLMAIA---DNCPL-LCDLDVSKCA 572 (645)
Q Consensus 505 ~~--~~~L~~L~l~~c~~l~~~~~~~l~~---~---~~~~L~~L~l~~c~~l~~~~l~~l~---~~~~~-L~~L~l~~~~ 572 (645)
.. ...++.++++.|... ..+...+.. . ...+++.|++++| .++......+. ...+. +.+|++.+|.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 32 237888888875433 333322222 0 2457889999997 56655444333 23344 7779999999
Q ss_pred CChHHHHHHHh--cCC-CCccEEecCCCCCCCHHHHHHH---HHhcccccccccccccCCChHHHHHHHHhcccC
Q 006426 573 VTDFGIASLAH--GNY-LNLQILSLSGCSMVSDKSLGAL---RKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRC 641 (645)
Q Consensus 573 i~~~~~~~l~~--~~~-~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~C~~l~~~~~~~~~~~l~~~ 641 (645)
+.|.++..+.. ... +.++.+++..|. |++.+...+ ...++.++++.+.+ +.++..+.+.+.+.+...
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~~ 317 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALERK 317 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhhc
Confidence 99998887763 133 577999999955 565554433 33567899999988 889998888888877553
No 61
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.32 E-value=7.3e-05 Score=62.23 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCC-CCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQ-GVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMA 530 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 530 (645)
..+.+|+.|++.++. +++ +..-...+|+|+.|+++... .+...||..+. .|+.|+++. +++....+..-.
T Consensus 53 a~l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p-----~levldlty-nnl~e~~lpgnf 123 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFP-----ALEVLDLTY-NNLNENSLPGNF 123 (264)
T ss_pred HHhhhhhhhhcccch-hhh--cChhhhhchhhhheecchhhhhcCccccCCCc-----hhhhhhccc-cccccccCCcch
Confidence 345556666655543 211 11111234666666655311 12233433322 566666665 234332221111
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCC
Q 006426 531 ELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVS 601 (645)
Q Consensus 531 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 601 (645)
- .+..|+.|+++. +.+.- +..-...+.+|+.|.+..|.+-.. ...+. .+..|++|.+.+ +.++
T Consensus 124 f-~m~tlralyl~d-ndfe~--lp~dvg~lt~lqil~lrdndll~l-pkeig--~lt~lrelhiqg-nrl~ 186 (264)
T KOG0617|consen 124 F-YMTTLRALYLGD-NDFEI--LPPDVGKLTNLQILSLRDNDLLSL-PKEIG--DLTRLRELHIQG-NRLT 186 (264)
T ss_pred h-HHHHHHHHHhcC-CCccc--CChhhhhhcceeEEeeccCchhhC-cHHHH--HHHHHHHHhccc-ceee
Confidence 1 234566677765 34322 112223567777777777763221 11222 445777777777 4444
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.30 E-value=0.0054 Score=34.14 Aligned_cols=24 Identities=46% Similarity=0.717 Sum_probs=15.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHH
Q 006426 586 YLNLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 586 ~~~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
+++|+.|+|++|.+||+.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 356777777777777776666554
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.14 E-value=0.003 Score=58.62 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=37.6
Q ss_pred CCcccCCC----HHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLP----DECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP----~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.|.+..|| ++|-+.||+||+ ..+++.+-+|||+|+++...
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhcc
Confidence 68899999 999999999999 99999999999999998755
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0021 Score=58.05 Aligned_cols=67 Identities=31% Similarity=0.366 Sum_probs=44.2
Q ss_pred ccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCH-HHHHHHHHhcCCCCeeecccccc
Q 006426 345 GHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSD-NGLISFAKAAFSLESLQLEECHR 413 (645)
Q Consensus 345 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~ 413 (645)
...+++|+.|.++....-....+..++..+|+|++|++++ +.+.+ ..+..+ +.+++|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl-~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPL-KELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchh-hhhcchhhhhcccCCc
Confidence 3556788888888653334445666667779999999888 45553 233333 3467788888887754
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.83 E-value=0.0097 Score=38.19 Aligned_cols=37 Identities=38% Similarity=0.433 Sum_probs=27.0
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCC
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVS 601 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 601 (645)
++|++|++++|+|++... .+. .+++|+.|++++| .|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~--~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELS--NLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGT--TCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCCCCcccCc-hHh--CCCCCCEEEecCC-CCC
Confidence 578999999999887432 355 8999999999985 465
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.70 E-value=0.0018 Score=58.52 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.4
Q ss_pred cCCcCCeeeecCCCC
Q 006426 559 NCPLLCDLDVSKCAV 573 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i 573 (645)
.+|+|++|.+++|.|
T Consensus 89 ~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKI 103 (260)
T ss_pred hCCceeEEeecCCcc
Confidence 334444444444443
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.21 E-value=0.0088 Score=51.86 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=35.4
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHH-HHHHHhcCCcCCeeeecCCCCChHHHHHHH-hcCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDAS-LMAIADNCPLLCDLDVSKCAVTDFGIASLA-HGNY 586 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~ 586 (645)
.|..|.+.+ +.++..... +.. .+++|..|.+.+ +++-..+ +..++ .||.|+.|.+-+|+++...-.... --.+
T Consensus 65 rL~tLll~n-NrIt~I~p~-L~~-~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 65 RLHTLLLNN-NRITRIDPD-LDT-FLPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred ccceEEecC-Ccceeeccc-hhh-hccccceEEecC-cchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEec
Confidence 555555555 344433211 222 245555555555 2332221 22222 355555555555554433211100 0145
Q ss_pred CCccEEecCC
Q 006426 587 LNLQILSLSG 596 (645)
Q Consensus 587 ~~L~~L~l~~ 596 (645)
|+|+.|++.+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5555555544
No 68
>PLN03150 hypothetical protein; Provisional
Probab=95.20 E-value=0.035 Score=59.91 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=34.2
Q ss_pred CcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCC
Q 006426 457 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWT 536 (645)
Q Consensus 457 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 536 (645)
++.|+++++. +.......+ ..+++|+.|+|+++ .++.. +...+..++ +|+.|+|++| .++......+.. +++
T Consensus 420 v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~-~L~~LdLs~N-~lsg~iP~~l~~--L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGN-SIRGN-IPPSLGSIT-SLEVLDLSYN-SFNGSIPESLGQ--LTS 491 (623)
T ss_pred EEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCC-cccCc-CChHHhCCC-CCCEEECCCC-CCCCCCchHHhc--CCC
Confidence 5566666554 221111222 23466666666652 33211 111122222 5555665553 333222233333 555
Q ss_pred ccEEecCC
Q 006426 537 LEMLNLDG 544 (645)
Q Consensus 537 L~~L~l~~ 544 (645)
|+.|+|++
T Consensus 492 L~~L~Ls~ 499 (623)
T PLN03150 492 LRILNLNG 499 (623)
T ss_pred CCEEECcC
Confidence 55555555
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.011 Score=53.76 Aligned_cols=57 Identities=30% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHH-HHHHHhcCCCCccEEecCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFG-IASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~l~~ 596 (645)
.+.|+.|.|+- |+|+. +..+. .|.+|++|.|..|.|.+.. +..+. .+|+|+.|+|..
T Consensus 40 Mp~lEVLsLSv-NkIss--L~pl~-rCtrLkElYLRkN~I~sldEL~YLk--nlpsLr~LWL~E 97 (388)
T KOG2123|consen 40 MPLLEVLSLSV-NKISS--LAPLQ-RCTRLKELYLRKNCIESLDELEYLK--NLPSLRTLWLDE 97 (388)
T ss_pred cccceeEEeec-ccccc--chhHH-HHHHHHHHHHHhcccccHHHHHHHh--cCchhhhHhhcc
Confidence 44555555544 34433 22222 3555555555555544432 33333 555555555544
No 70
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.10 E-value=0.00073 Score=56.44 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=78.1
Q ss_pred CCCcEEEecCCCCCC--ccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 481 PQLQNVDLSGLQGVT--DAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~--~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
.++..|.+++ +.++ ..++..+. +|+.|++.+ +.+++.+ ..+.. +++|+.|++.- +.+.. +..-+.
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~-----nlevln~~n-nqie~lp-~~iss--l~klr~lnvgm-nrl~~--lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELK-----NLEVLNLSN-NQIEELP-TSISS--LPKLRILNVGM-NRLNI--LPRGFG 99 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhh-----hhhhhhccc-chhhhcC-hhhhh--chhhhheecch-hhhhc--CccccC
Confidence 5566677777 3433 33444443 888898887 4565543 33444 78888888864 44332 222234
Q ss_pred cCCcCCeeeecCCCCChHHHH-HHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 559 NCPLLCDLDVSKCAVTDFGIA-SLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~~~-~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
.+|.|+.||+.+|++.+..+. .+. .+..|+-|+++++. . +.++.-.....+|+.|.+++..-++
T Consensus 100 s~p~levldltynnl~e~~lpgnff--~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFF--YMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CCchhhhhhccccccccccCCcchh--HHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchhh
Confidence 579999999999987665332 222 45577888888743 2 2233323334669999998855443
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.82 E-value=0.017 Score=31.35 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=12.7
Q ss_pred CCcCCeeeecCCCCChHHHHHHH
Q 006426 560 CPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 560 ~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+++|++|+|++|+|+++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35666666666666666666554
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.014 Score=53.18 Aligned_cols=81 Identities=27% Similarity=0.286 Sum_probs=60.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHH-HHHHHHhc
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKS-LGALRKLG 612 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~ 612 (645)
+.+.++|+..|| .++|..+ .+.+|.|+.|.|+-|.|+.. ..+. .|++|++|+|.. +.|.+.. +..+ ...
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNkIssL--~pl~--rCtrLkElYLRk-N~I~sldEL~YL-knl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNKISSL--APLQ--RCTRLKELYLRK-NCIESLDELEYL-KNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeeccccccc--hhHH--HHHHHHHHHHHh-cccccHHHHHHH-hcC
Confidence 567889999998 8888654 34689999999999998763 4444 789999999987 5565322 2333 345
Q ss_pred cccccccccccc
Q 006426 613 QTLLGLNLQHCN 624 (645)
Q Consensus 613 ~~L~~L~l~~C~ 624 (645)
|+|+.|+|...+
T Consensus 88 psLr~LWL~ENP 99 (388)
T KOG2123|consen 88 PSLRTLWLDENP 99 (388)
T ss_pred chhhhHhhccCC
Confidence 789999998743
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.47 E-value=0.03 Score=48.69 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=44.9
Q ss_pred cCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCH-HHHHHHHHhcCCCCeeecccccccchhhHHHHhh
Q 006426 346 HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSD-NGLISFAKAAFSLESLQLEECHRITQLGFFGSLL 424 (645)
Q Consensus 346 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 424 (645)
+.+++|..|.+++. .++...- .+...+|+|+.|.+.++ .+.. ..+..++ .||+|++|.+-+++
T Consensus 61 p~l~rL~tLll~nN-rIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pLa-~~p~L~~Ltll~Np------------ 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPLA-SCPKLEYLTLLGNP------------ 124 (233)
T ss_pred CCccccceEEecCC-cceeecc-chhhhccccceEEecCc-chhhhhhcchhc-cCCccceeeecCCc------------
Confidence 44566666666653 2333211 22333566666666663 2222 2233332 35566666555432
Q ss_pred hcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCC
Q 006426 425 NCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCP 466 (645)
Q Consensus 425 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (645)
.-..-......+..+|+|+.|++++..
T Consensus 125 ---------------v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 125 ---------------VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ---------------hhcccCceeEEEEecCcceEeehhhhh
Confidence 111122222235568999999988754
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.09 E-value=0.0086 Score=48.40 Aligned_cols=60 Identities=25% Similarity=0.223 Sum_probs=29.9
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
.|+.++|++ +.+.+.+.. +.. ..+.++.|++.+ +.+++...+ ++ .+|.|+.|+++.|++.
T Consensus 54 el~~i~ls~-N~fk~fp~k-ft~-kf~t~t~lNl~~-neisdvPeE-~A-am~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKK-FTI-KFPTATTLNLAN-NEISDVPEE-LA-AMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEeccc-chhhhCCHH-Hhh-ccchhhhhhcch-hhhhhchHH-Hh-hhHHhhhcccccCccc
Confidence 445555555 233333322 222 245566666665 456555444 32 3566666666666543
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.67 E-value=0.029 Score=45.44 Aligned_cols=118 Identities=21% Similarity=0.262 Sum_probs=74.2
Q ss_pred chHHHHhhcc--cCceEEEccCCCCCC-hHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 498 GFLPVLESCE--AGLAKVNLSGCVNLT-DKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 498 ~~~~l~~~~~--~~L~~L~l~~c~~l~-~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
++....+.|. ..+..++|++|.-.. ...+..+.. ...|...+|++ |.+.+.. ..+...+|.+++|++++|.|.
T Consensus 15 gV~evVercedakE~h~ldLssc~lm~i~davy~l~~--~~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~neis 90 (177)
T KOG4579|consen 15 GVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSK--GYELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANNEIS 90 (177)
T ss_pred hHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhC--CceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchhhhh
Confidence 3444444442 256678888885432 222333433 57888889988 5655433 344456789999999999998
Q ss_pred hHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCC
Q 006426 575 DFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 575 ~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l 626 (645)
+...+ ++ .++.|+.|+++.++-.. ....+.. ..++..|+..+ +.+
T Consensus 91 dvPeE-~A--am~aLr~lNl~~N~l~~--~p~vi~~-L~~l~~Lds~~-na~ 135 (177)
T KOG4579|consen 91 DVPEE-LA--AMPALRSLNLRFNPLNA--EPRVIAP-LIKLDMLDSPE-NAR 135 (177)
T ss_pred hchHH-Hh--hhHHhhhcccccCcccc--chHHHHH-HHhHHHhcCCC-Ccc
Confidence 87655 66 88999999999855332 2233333 34466666666 444
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.58 E-value=0.075 Score=54.29 Aligned_cols=172 Identities=26% Similarity=0.263 Sum_probs=95.7
Q ss_pred cCCCCeeecccccccchhhHHHHhhhcCc-CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHh
Q 006426 400 AFSLESLQLEECHRITQLGFFGSLLNCGE-KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGK 478 (645)
Q Consensus 400 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 478 (645)
.+.++.|.+.+.. +++..-... ... +|+.|++.+ +.+...+ ..+..+++|+.|++++|. +.+... ...
T Consensus 115 ~~~l~~L~l~~n~-i~~i~~~~~---~~~~nL~~L~l~~-N~i~~l~---~~~~~l~~L~~L~l~~N~-l~~l~~--~~~ 183 (394)
T COG4886 115 LTNLTSLDLDNNN-ITDIPPLIG---LLKSNLKELDLSD-NKIESLP---SPLRNLPNLKNLDLSFND-LSDLPK--LLS 183 (394)
T ss_pred ccceeEEecCCcc-cccCccccc---cchhhcccccccc-cchhhhh---hhhhccccccccccCCch-hhhhhh--hhh
Confidence 4678888887643 322221111 112 788888877 3333332 124568888888888876 333222 111
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
..++|+.|++++ ..+.+-.-. ... +..|++|.+++...+... ..+.. +..+..|.+.+ +++.+. .....
T Consensus 184 ~~~~L~~L~ls~-N~i~~l~~~--~~~-~~~L~~l~~~~N~~~~~~--~~~~~--~~~l~~l~l~~-n~~~~~--~~~~~ 252 (394)
T COG4886 184 NLSNLNNLDLSG-NKISDLPPE--IEL-LSALEELDLSNNSIIELL--SSLSN--LKNLSGLELSN-NKLEDL--PESIG 252 (394)
T ss_pred hhhhhhheeccC-CccccCchh--hhh-hhhhhhhhhcCCcceecc--hhhhh--cccccccccCC-ceeeec--cchhc
Confidence 348888888887 344322111 011 115788888874222221 22222 55666666655 454431 12334
Q ss_pred cCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 559 NCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
.+++|+.|++++|.+++... +. ...+|+.|++++.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~--~~--~~~~l~~L~~s~n 287 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS--LG--SLTNLRELDLSGN 287 (394)
T ss_pred cccccceecccccccccccc--cc--ccCccCEEeccCc
Confidence 57778888888888766543 33 6778888888873
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.51 E-value=0.072 Score=54.41 Aligned_cols=177 Identities=23% Similarity=0.220 Sum_probs=103.3
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhc-CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcccccccccc
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAA-FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVS 452 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 452 (645)
.+.++.|.+.+ +.+++ +....... ++|+.|++.+.. +.... ..+. ..++|+.|+++++. +.+.+.. ..
T Consensus 115 ~~~l~~L~l~~-n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~--~~~~-~l~~L~~L~l~~N~-l~~l~~~---~~ 183 (394)
T COG4886 115 LTNLTSLDLDN-NNITD--IPPLIGLLKSNLKELDLSDNK-IESLP--SPLR-NLPNLKNLDLSFND-LSDLPKL---LS 183 (394)
T ss_pred ccceeEEecCC-ccccc--Cccccccchhhcccccccccc-hhhhh--hhhh-ccccccccccCCch-hhhhhhh---hh
Confidence 36789999887 34444 22222334 389999998753 33321 1111 22999999999854 3333322 11
Q ss_pred CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHh
Q 006426 453 PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAEL 532 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 532 (645)
..++|+.|+++++. +.+... .......|++|.+++...+..... ..... ++..+.+.+ +.+.+. ...+..
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~~---~~~~~-~l~~l~l~~-n~~~~~-~~~~~~- 253 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPP--EIELLSALEELDLSNNSIIELLSS---LSNLK-NLSGLELSN-NKLEDL-PESIGN- 253 (394)
T ss_pred hhhhhhheeccCCc-cccCch--hhhhhhhhhhhhhcCCcceecchh---hhhcc-cccccccCC-ceeeec-cchhcc-
Confidence 57899999999885 322211 112224589999887432222111 11111 566666555 233321 122333
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH
Q 006426 533 HGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF 576 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~ 576 (645)
+++++.|++++ +.+++... .....+|+.|+++++.+...
T Consensus 254 -l~~l~~L~~s~-n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 254 -LSNLETLDLSN-NQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -ccccceecccc-cccccccc---ccccCccCEEeccCcccccc
Confidence 67899999988 57777543 34679999999999875543
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=92.07 E-value=0.13 Score=40.39 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=27.4
Q ss_pred cccCCCHHHHHHHHhhcCCcccchhhhhhhH
Q 006426 65 SIEVLPDECLFEIFRRLDGGEERSACASVSK 95 (645)
Q Consensus 65 ~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr 95 (645)
.+.+||+||+..||+|-. ..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 578899999999999999 889988888887
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.38 E-value=0.12 Score=28.02 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=8.3
Q ss_pred cccccccccccCCChHHHHHH
Q 006426 614 TLLGLNLQHCNAISTNSVDML 634 (645)
Q Consensus 614 ~L~~L~l~~C~~l~~~~~~~~ 634 (645)
+|+.|+|++|. |+.+++..+
T Consensus 3 ~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 3 NLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp T-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCEEEccCCc-CCHHHHHHh
Confidence 34455554422 555544444
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.22 E-value=0.29 Score=27.70 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=17.0
Q ss_pred CcCCeeeecCCCCChHHHHHHH
Q 006426 561 PLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
++|++|+|++|.|.+.|...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888888777766
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.64 E-value=0.064 Score=54.98 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=32.5
Q ss_pred cCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeeccccc
Q 006426 346 HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECH 412 (645)
Q Consensus 346 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 412 (645)
..+.+|+.|++.+.. +. .+......+++|++|++++ +.|+. +..+. .++.|+.|++.++.
T Consensus 92 ~~~~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~-N~I~~--i~~l~-~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSF-NKITK--LEGLS-TLTLLKELNLSGNL 151 (414)
T ss_pred ccccceeeeeccccc-hh--hcccchhhhhcchheeccc-ccccc--ccchh-hccchhhheeccCc
Confidence 556777777776532 21 1222134567788888777 44443 22221 24557777776643
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.16 E-value=0.32 Score=49.92 Aligned_cols=104 Identities=28% Similarity=0.307 Sum_probs=61.9
Q ss_pred CCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc
Q 006426 480 CPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADN 559 (645)
Q Consensus 480 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~ 559 (645)
+.+|+.|++.+ ..+.. +......++ +|++|+|++ +.|++. ..+.. ++.|+.|++++ |.+++.. .+ ..
T Consensus 94 ~~~l~~l~l~~-n~i~~--i~~~l~~~~-~L~~L~ls~-N~I~~i--~~l~~--l~~L~~L~l~~-N~i~~~~--~~-~~ 160 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIEK--IENLLSSLV-NLQVLDLSF-NKITKL--EGLST--LTLLKELNLSG-NLISDIS--GL-ES 160 (414)
T ss_pred ccceeeeeccc-cchhh--cccchhhhh-cchheeccc-cccccc--cchhh--ccchhhheecc-Ccchhcc--CC-cc
Confidence 47788888876 33321 111123333 888888888 455542 22333 56688888887 4665432 11 23
Q ss_pred CCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 560 CPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 560 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
++.|+.+++++|.+.+.....+. .+.+|+.+.+.++.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~--~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELS--ELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhh--hccchHHHhccCCc
Confidence 67888888888876665431022 56788888888743
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.96 E-value=0.43 Score=23.27 Aligned_cols=11 Identities=36% Similarity=0.301 Sum_probs=4.1
Q ss_pred cCCeeeecCCC
Q 006426 562 LLCDLDVSKCA 572 (645)
Q Consensus 562 ~L~~L~l~~~~ 572 (645)
+|++|+|++|+
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444444
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.34 E-value=0.25 Score=51.75 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=37.8
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.+.+..||.|+..+||.||+ .+++..+++||+.|+.++..
T Consensus 105 ~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred cchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhc
Confidence 78899999999999999999 99999999999999998855
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.51 E-value=0.97 Score=25.54 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=11.9
Q ss_pred cccccccccccCCChHHHHHHHHh
Q 006426 614 TLLGLNLQHCNAISTNSVDMLVEQ 637 (645)
Q Consensus 614 ~L~~L~l~~C~~l~~~~~~~~~~~ 637 (645)
+|++|+|++ +.++.+|+..+.+.
T Consensus 3 ~L~~LdL~~-N~i~~~G~~~L~~~ 25 (28)
T smart00368 3 SLRELDLSN-NKLGDEGARALAEA 25 (28)
T ss_pred ccCEEECCC-CCCCHHHHHHHHHH
Confidence 355555555 44555555555443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.94 E-value=2 Score=43.84 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCC--CCCHHHHHHHHhhCCCCcEEeeccCCCCC--
Q 006426 182 GLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCP--AITDRALITIAKNCPKLIDLTIESCSSIG-- 257 (645)
Q Consensus 182 ~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 257 (645)
.+..+....|.+.+++|++..-..-+.+..+....|+|+.|+|+++. ..++..+..+ ....|++|-+.++.-.+
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccch
Confidence 34566667788888888775444456667777778888888888862 2222222222 24567788887765222
Q ss_pred ---hHHHHHHHhcCCCccEEE
Q 006426 258 ---NEGLQAVGRFCPNLKSIS 275 (645)
Q Consensus 258 ---~~~l~~l~~~~~~L~~L~ 275 (645)
.+.+.++.+.+|+|..||
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 244556666788887776
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.01 E-value=3.2 Score=42.44 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=50.6
Q ss_pred hCCCccEEecCCCCCCCH-HHHHHHHhcCCcCCeeeecCCC--CChHHHHHHHhcCCCCccEEecCCCCCCCH-----HH
Q 006426 533 HGWTLEMLNLDGCRKISD-ASLMAIADNCPLLCDLDVSKCA--VTDFGIASLAHGNYLNLQILSLSGCSMVSD-----KS 604 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~-~~l~~l~~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~-----~~ 604 (645)
..+.+..++|++ |++-. ..+..+....|+|++|+|++|. +... ..+..-+...|++|.+.|++--+. .-
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 567888888887 34432 3355566677888888888883 3222 222212466788888888553332 22
Q ss_pred HHHHHHhcccccccc
Q 006426 605 LGALRKLGQTLLGLN 619 (645)
Q Consensus 605 ~~~~~~~~~~L~~L~ 619 (645)
+..+.+..|+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 445566677666654
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=70.67 E-value=5.8 Score=36.37 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=34.8
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLS 102 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~ 102 (645)
...+.+||.|++..|+.+|++.+|+..++.|--.-..+..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 5788999999999999999999999999988766666554
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=69.87 E-value=3.1 Score=32.33 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred CcccCCCHHHHHHHHhhcCCcccchhh
Q 006426 64 VSIEVLPDECLFEIFRRLDGGEERSAC 90 (645)
Q Consensus 64 ~~~~~LP~eil~~If~~L~~~~d~~~~ 90 (645)
..|..||.||...|+++|+ ..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~-~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLS-NKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCC-HHHHHHH
Confidence 7899999999999999999 8887643
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=66.09 E-value=2.5 Score=22.14 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=6.2
Q ss_pred CCeeeecCCCCC
Q 006426 563 LCDLDVSKCAVT 574 (645)
Q Consensus 563 L~~L~l~~~~i~ 574 (645)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555443
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=58.18 E-value=9.8 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=9.6
Q ss_pred CcEEeeccCCCCChHHHHHHHhcC
Q 006426 245 LIDLTIESCSSIGNEGLQAVGRFC 268 (645)
Q Consensus 245 L~~L~l~~~~~~~~~~l~~l~~~~ 268 (645)
|++|.|.......+..++.+...|
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~C 25 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGC 25 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccC
Confidence 444444443322233344444333
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.95 E-value=8.8 Score=20.94 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.4
Q ss_pred CcCCeeeecCCCC
Q 006426 561 PLLCDLDVSKCAV 573 (645)
Q Consensus 561 ~~L~~L~l~~~~i 573 (645)
++|+.|++++|+|
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455555555543
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.95 E-value=8.8 Score=20.94 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=6.4
Q ss_pred CcCCeeeecCCCC
Q 006426 561 PLLCDLDVSKCAV 573 (645)
Q Consensus 561 ~~L~~L~l~~~~i 573 (645)
++|+.|++++|+|
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455555555543
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=45.34 E-value=18 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=6.8
Q ss_pred CcCCeeeecCCCC
Q 006426 561 PLLCDLDVSKCAV 573 (645)
Q Consensus 561 ~~L~~L~l~~~~i 573 (645)
.+|+.|+++.|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=43.63 E-value=4.7 Score=41.57 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=35.0
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
.|.+|+++ ||+++...+.. ..+..|++|-|.+|++.............--.+.|+...|
T Consensus 212 pLi~lDfS-cNkis~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 PLIRLDFS-CNKISYLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeecc-cCceeecchhh--hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 57777876 47777654432 3578888888888876654333322123333456666555
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.86 E-value=3.8 Score=42.22 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=54.7
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
.|..|+.+.|. +.... ..+.. +.+|+.|++.. +++.+... .+. +=.|..||++.|+|.-..+ .+. ++..
T Consensus 167 tl~~ld~s~ne-i~slp-sql~~--l~slr~l~vrR-n~l~~lp~-El~--~LpLi~lDfScNkis~iPv-~fr--~m~~ 235 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLP-SQLGY--LTSLRDLNVRR-NHLEDLPE-ELC--SLPLIRLDFSCNKISYLPV-DFR--KMRH 235 (722)
T ss_pred hHHHhhhhhhh-hhhch-HHhhh--HHHHHHHHHhh-hhhhhCCH-HHh--CCceeeeecccCceeecch-hhh--hhhh
Confidence 66777777642 22211 11222 56777777766 45444321 222 3457788888887655432 233 6778
Q ss_pred ccEEecCCCCCCCHHHHHHH-HHhcccccccccccc
Q 006426 589 LQILSLSGCSMVSDKSLGAL-RKLGQTLLGLNLQHC 623 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~-~~~~~~L~~L~l~~C 623 (645)
|++|-|.+++ ++.-...-. .....--++|+.+-|
T Consensus 236 Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 236 LQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred heeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 8888887755 432222221 122234556777766
No 97
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=31.74 E-value=33 Score=33.16 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=33.7
Q ss_pred CcccCCCHHHHHHHHhhcCC-------cccchhhhhhhHhHHHHhhhh
Q 006426 64 VSIEVLPDECLFEIFRRLDG-------GEERSACASVSKRWLSLLSNI 104 (645)
Q Consensus 64 ~~~~~LP~eil~~If~~L~~-------~~d~~~~~~Vcr~W~~~~~~~ 104 (645)
+.+.+||.|.|..|+..... .+..+.++-||+.|++.....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 68889999999999998763 334678999999999987553
No 98
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=31.22 E-value=1.5e+02 Score=28.76 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=58.5
Q ss_pred HhhcccCceEEEccCCCCCChHHHHHHHHh--hCCCccEEecCCCCCCCHHHH---HHHHhcCCcCCeeeecCCCCChHH
Q 006426 503 LESCEAGLAKVNLSGCVNLTDKVVSTMAEL--HGWTLEMLNLDGCRKISDASL---MAIADNCPLLCDLDVSKCAVTDFG 577 (645)
Q Consensus 503 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~l---~~l~~~~~~L~~L~l~~~~i~~~~ 577 (645)
+..+.+.++.++|++...+....+..+... .....+...+.+ ...++... ..+...++.|++|++.+|-|+..+
T Consensus 193 i~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 193 IKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLG 271 (353)
T ss_pred HhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccccccccHH
Confidence 333445889999988777876666554441 134555566655 34444333 334455788999999999999988
Q ss_pred HHHHHhc--CCCCccEEecCC
Q 006426 578 IASLAHG--NYLNLQILSLSG 596 (645)
Q Consensus 578 ~~~l~~~--~~~~L~~L~l~~ 596 (645)
+.++.+. ....|..+.+.+
T Consensus 272 i~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 272 IMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred HHHHHHHHhccchhhHhhhhh
Confidence 8777642 445566555544
No 99
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.28 E-value=7.8 Score=31.76 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=6.0
Q ss_pred ccCCCCCcEEecc
Q 006426 451 VSPCKSLRSLSIR 463 (645)
Q Consensus 451 ~~~~~~L~~L~l~ 463 (645)
+..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4456667776665
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=27.99 E-value=2e+02 Score=28.07 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred ChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC---CcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCC
Q 006426 522 TDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC---PLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSG 596 (645)
Q Consensus 522 ~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~---~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~ 596 (645)
.+..+..+.. .-+.++..+|.+..+|....+..+.+.+ ...+...+.+....+..-.+++. ..++.|+.|++.+
T Consensus 186 ~e~~leri~~-nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 186 VESSLERIKE-NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred HHHHHHHHhc-CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc
Confidence 3455555555 5689999999887788888777776544 44555666666555543333331 3778899999988
Q ss_pred CCCCCHHHHHHHHHhc
Q 006426 597 CSMVSDKSLGALRKLG 612 (645)
Q Consensus 597 c~~l~~~~~~~~~~~~ 612 (645)
+.||..++-++....
T Consensus 265 -nFItg~gi~a~~~al 279 (353)
T KOG3735|consen 265 -NFITGLGIMALLRAL 279 (353)
T ss_pred -cccccHHHHHHHHHH
Confidence 779988887766543
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=26.74 E-value=38 Score=18.78 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=6.4
Q ss_pred cCCeeeecCCCC
Q 006426 562 LLCDLDVSKCAV 573 (645)
Q Consensus 562 ~L~~L~l~~~~i 573 (645)
+|+.|++++|++
T Consensus 3 ~L~~L~vs~N~L 14 (26)
T smart00364 3 SLKELNVSNNQL 14 (26)
T ss_pred ccceeecCCCcc
Confidence 455555555553
No 102
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.41 E-value=50 Score=33.86 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=23.4
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSAC 90 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~ 90 (645)
...|..||.||-..|+++|+ .+|+...
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~-~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIG-NKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhc-cchhhhh
Confidence 46799999999999999999 8887643
No 103
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.76 E-value=50 Score=34.68 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=25.1
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASV 93 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~V 93 (645)
...|..||.||...|++||+ ..|+..+..-
T Consensus 445 ~~~w~~lP~Eik~~Il~~l~-~~dl~~~~~~ 474 (480)
T PHA03100 445 NTYWNILPIEIKYKILEYLS-NRDLKSLIEN 474 (480)
T ss_pred CCchhhCcHHHHHHHHHhCC-HHHHHHHHhh
Confidence 35799999999999999999 8888765443
Done!