Query 006426
Match_columns 645
No_of_seqs 405 out of 2993
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 00:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 9.4E-42 3.2E-46 368.0 36.7 499 63-616 3-534 (594)
2 3ogk_B Coronatine-insensitive 100.0 8E-41 2.7E-45 360.4 37.2 495 66-615 13-540 (592)
3 2p1m_B Transport inhibitor res 100.0 1.3E-30 4.5E-35 280.9 35.8 411 160-596 103-540 (594)
4 3ogk_B Coronatine-insensitive 100.0 1.6E-30 5.4E-35 280.0 30.6 412 160-596 110-547 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-27 8.5E-32 246.8 37.5 419 162-645 3-461 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-26 2E-30 236.4 34.2 389 191-640 3-424 (461)
7 2ast_B S-phase kinase-associat 100.0 4.7E-27 1.6E-31 233.7 21.1 292 63-404 6-299 (336)
8 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.7E-28 226.3 -3.3 138 160-311 55-194 (606)
9 3t6q_A CD180 antigen; protein- 99.8 4.3E-23 1.5E-27 222.5 -0.7 426 160-624 79-558 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.8 2.3E-23 7.7E-28 224.7 -8.1 228 373-624 326-556 (606)
11 2z81_A CD282 antigen, TOLL-lik 99.8 1.9E-21 6.5E-26 207.0 6.6 423 161-624 49-508 (549)
12 3rgz_A Protein brassinosteroid 99.8 1.8E-23 6.1E-28 230.4 -9.7 430 161-624 99-549 (768)
13 3rgz_A Protein brassinosteroid 99.8 2.1E-22 7.1E-27 221.9 -3.7 374 187-598 174-549 (768)
14 3vq2_A TLR4, TOLL-like recepto 99.8 6.6E-22 2.3E-26 213.2 -0.8 230 347-599 326-557 (606)
15 2ast_B S-phase kinase-associat 99.8 1.7E-18 5.6E-23 171.9 19.8 243 350-609 48-292 (336)
16 1o6v_A Internalin A; bacterial 99.8 1.6E-18 5.5E-23 179.8 19.6 213 346-598 174-386 (466)
17 4fmz_A Internalin; leucine ric 99.8 2.9E-18 9.9E-23 170.9 20.0 303 189-598 42-344 (347)
18 2z63_A TOLL-like receptor 4, v 99.8 4.9E-22 1.7E-26 212.8 -8.7 423 161-624 51-529 (570)
19 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-19 4.3E-24 191.4 9.8 413 162-623 21-478 (520)
20 4fmz_A Internalin; leucine ric 99.8 2E-18 6.7E-23 172.1 17.6 305 241-627 42-346 (347)
21 1o6v_A Internalin A; bacterial 99.8 2.1E-18 7.3E-23 178.9 17.7 341 191-624 46-386 (466)
22 1ziw_A TOLL-like receptor 3; i 99.8 3.9E-21 1.3E-25 210.1 -3.5 135 481-628 381-518 (680)
23 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-20 9.6E-25 203.3 2.5 111 509-628 481-598 (680)
24 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-20 1.2E-24 197.3 1.6 402 161-601 73-511 (549)
25 2z7x_B TOLL-like receptor 1, v 99.8 2.3E-19 7.9E-24 189.4 7.3 411 165-627 3-457 (520)
26 4ecn_A Leucine-rich repeat pro 99.7 2.4E-19 8.1E-24 196.0 3.2 251 347-624 571-838 (876)
27 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-20 4.4E-25 209.9 -8.4 302 161-491 47-391 (844)
28 4eco_A Uncharacterized protein 99.7 1.1E-19 3.7E-24 195.5 -2.4 35 162-201 81-115 (636)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-18 4.4E-23 185.2 5.7 415 162-623 52-507 (562)
30 2z63_A TOLL-like receptor 4, v 99.7 1.8E-20 6.2E-25 200.6 -9.0 417 162-628 28-508 (570)
31 3j0a_A TOLL-like receptor 5; m 99.7 2.4E-20 8.2E-25 207.7 -8.4 327 162-518 24-391 (844)
32 3v47_A TOLL-like receptor 5B a 99.7 7.5E-19 2.6E-23 182.3 3.2 262 347-623 127-405 (455)
33 3v47_A TOLL-like receptor 5B a 99.7 7.6E-19 2.6E-23 182.2 3.1 367 162-598 30-406 (455)
34 2ca6_A RAN GTPase-activating p 99.7 4.4E-16 1.5E-20 157.3 23.2 180 452-638 119-329 (386)
35 2ca6_A RAN GTPase-activating p 99.7 5.6E-16 1.9E-20 156.6 23.1 162 455-622 159-339 (386)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.5E-18 8.7E-23 182.9 2.2 416 162-627 31-486 (562)
37 3bz5_A Internalin-J, INLJ; leu 99.7 5E-17 1.7E-21 167.0 11.3 31 561-596 318-348 (457)
38 4eco_A Uncharacterized protein 99.7 1.1E-18 3.7E-23 187.8 -4.0 381 213-627 202-633 (636)
39 4ecn_A Leucine-rich repeat pro 99.7 1.8E-17 6.2E-22 181.2 3.2 326 241-599 489-839 (876)
40 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-16 4.3E-21 164.0 7.4 341 189-627 40-387 (457)
41 3o6n_A APL1; leucine-rich repe 99.6 3.6E-17 1.2E-21 165.6 -0.2 318 215-609 43-360 (390)
42 3goz_A Leucine-rich repeat-con 99.6 1.2E-14 4.1E-19 145.2 17.9 246 349-603 22-299 (362)
43 3o6n_A APL1; leucine-rich repe 99.6 1.6E-16 5.4E-21 160.9 3.4 317 190-582 44-360 (390)
44 2id5_A Lingo-1, leucine rich r 99.6 1.1E-16 3.8E-21 166.8 -2.7 302 191-574 32-333 (477)
45 3oja_B Anopheles plasmodium-re 99.5 2.7E-16 9.2E-21 168.2 -1.2 316 190-608 50-365 (597)
46 4g8a_A TOLL-like receptor 4; l 99.5 9.5E-17 3.3E-21 174.3 -5.7 138 162-312 52-189 (635)
47 3oja_B Anopheles plasmodium-re 99.5 3.1E-15 1.1E-19 160.0 5.1 317 161-582 50-366 (597)
48 3goz_A Leucine-rich repeat-con 99.5 1.7E-13 5.8E-18 136.8 16.5 263 367-637 14-307 (362)
49 2id5_A Lingo-1, leucine rich r 99.5 3.6E-16 1.2E-20 162.9 -3.7 300 269-598 32-331 (477)
50 1jl5_A Outer protein YOPM; leu 99.5 2.1E-15 7.1E-20 154.8 -0.5 344 162-624 71-427 (454)
51 1jl5_A Outer protein YOPM; leu 99.5 1.7E-14 5.9E-19 147.9 6.1 375 162-628 11-410 (454)
52 4g8a_A TOLL-like receptor 4; l 99.5 1.4E-15 4.8E-20 165.1 -2.4 111 160-280 74-184 (635)
53 3e4g_A ATP synthase subunit S, 99.4 6E-14 2.1E-18 120.2 5.8 104 536-642 62-170 (176)
54 3un9_A NLR family member X1; l 99.4 2.5E-12 8.6E-17 127.7 18.1 195 428-629 72-285 (372)
55 1xku_A Decorin; proteoglycan, 99.4 7.6E-15 2.6E-19 144.8 -2.1 179 428-622 145-328 (330)
56 3e4g_A ATP synthase subunit S, 99.4 3.6E-13 1.2E-17 115.3 6.9 102 509-615 62-169 (176)
57 3o53_A Protein LRIM1, AGAP0063 99.4 1.9E-13 6.6E-18 133.6 5.6 81 534-621 190-270 (317)
58 2ft3_A Biglycan; proteoglycan, 99.4 9.9E-15 3.4E-19 144.1 -4.8 180 428-624 147-331 (332)
59 2z80_A TOLL-like receptor 2, v 99.3 5.2E-13 1.8E-17 132.9 5.9 160 428-599 149-313 (353)
60 3un9_A NLR family member X1; l 99.3 4.6E-11 1.6E-15 118.6 18.7 194 374-603 71-285 (372)
61 4fcg_A Uncharacterized protein 99.3 1.6E-13 5.5E-18 134.6 -0.0 224 349-596 81-310 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.3 2.2E-13 7.5E-18 133.2 0.8 235 366-636 25-259 (317)
63 1ogq_A PGIP-2, polygalacturona 99.3 7.5E-15 2.6E-19 143.2 -10.0 253 349-626 50-304 (313)
64 2z80_A TOLL-like receptor 2, v 99.3 4.8E-13 1.6E-17 133.2 2.2 258 349-627 52-314 (353)
65 3g06_A SSPH2 (leucine-rich rep 99.3 8.8E-12 3E-16 131.9 11.3 56 243-310 40-95 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.3 3.5E-12 1.2E-16 134.9 7.2 267 269-610 40-306 (622)
67 2z66_A Variable lymphocyte rec 99.3 6.7E-14 2.3E-18 136.4 -6.1 230 349-599 28-260 (306)
68 1xku_A Decorin; proteoglycan, 99.3 1.6E-12 5.6E-17 128.0 3.5 152 428-597 171-329 (330)
69 2z66_A Variable lymphocyte rec 99.2 4.9E-14 1.7E-18 137.4 -8.2 233 374-627 27-261 (306)
70 3zyj_A Leucine-rich repeat-con 99.2 4.1E-13 1.4E-17 137.9 -1.7 83 509-598 208-290 (440)
71 3zyi_A Leucine-rich repeat-con 99.2 4.8E-13 1.6E-17 138.0 -1.4 83 509-598 219-301 (452)
72 3oja_A Leucine-rich immune mol 99.2 6.6E-13 2.3E-17 137.6 -1.2 238 348-621 33-270 (487)
73 1wwl_A Monocyte differentiatio 99.2 6.8E-13 2.3E-17 129.4 -2.0 60 428-490 149-210 (312)
74 1ozn_A Reticulon 4 receptor; N 99.2 2.9E-12 9.8E-17 123.4 1.9 108 349-465 32-139 (285)
75 2ft3_A Biglycan; proteoglycan, 99.2 1.2E-12 4.2E-17 129.0 -0.9 109 428-545 217-330 (332)
76 1h6u_A Internalin H; cell adhe 99.2 3.1E-11 1.1E-15 117.1 9.0 189 374-598 40-228 (308)
77 3zyj_A Leucine-rich repeat-con 99.2 9.6E-13 3.3E-17 135.2 -2.7 179 428-624 112-290 (440)
78 3zyi_A Leucine-rich repeat-con 99.2 1.5E-12 5.2E-17 134.2 -1.4 159 451-624 143-301 (452)
79 4glp_A Monocyte differentiatio 99.2 3.7E-12 1.3E-16 124.1 1.3 112 350-466 65-180 (310)
80 1h6u_A Internalin H; cell adhe 99.2 4.4E-11 1.5E-15 116.1 8.0 193 347-575 39-231 (308)
81 3oja_A Leucine-rich immune mol 99.1 2E-12 6.8E-17 134.0 -2.2 226 370-631 29-254 (487)
82 1wwl_A Monocyte differentiatio 99.1 5.3E-11 1.8E-15 116.0 7.3 209 399-628 93-310 (312)
83 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 3.5E-11 1.2E-15 81.2 4.2 40 63-103 6-45 (53)
84 4fcg_A Uncharacterized protein 99.1 2.5E-12 8.7E-17 126.0 -2.5 224 373-622 79-310 (328)
85 1ozn_A Reticulon 4 receptor; N 99.1 9.8E-12 3.4E-16 119.6 1.4 208 374-600 31-238 (285)
86 1ogq_A PGIP-2, polygalacturona 99.1 1E-12 3.5E-17 128.1 -8.6 230 375-627 50-281 (313)
87 2ra8_A Uncharacterized protein 99.0 5.4E-10 1.8E-14 109.8 10.5 155 475-638 166-331 (362)
88 4glp_A Monocyte differentiatio 99.0 3.2E-10 1.1E-14 110.3 8.8 67 242-310 63-131 (310)
89 3rfs_A Internalin B, repeat mo 99.0 4.4E-11 1.5E-15 113.9 1.8 61 534-598 156-216 (272)
90 4ezg_A Putative uncharacterize 99.0 3.6E-10 1.2E-14 101.8 6.8 127 453-596 64-190 (197)
91 2ra8_A Uncharacterized protein 99.0 8.2E-09 2.8E-13 101.4 15.8 145 428-582 172-328 (362)
92 4ezg_A Putative uncharacterize 99.0 3.7E-10 1.3E-14 101.7 5.4 111 452-575 85-195 (197)
93 2z62_A TOLL-like receptor 4, v 99.0 3.6E-11 1.2E-15 115.0 -1.9 59 349-411 28-86 (276)
94 1h6t_A Internalin B; cell adhe 98.9 1.3E-09 4.4E-14 104.7 8.6 34 374-411 45-78 (291)
95 1io0_A Tropomodulin; LRR prote 98.9 2E-08 6.7E-13 88.9 14.8 122 472-596 27-160 (185)
96 1h6t_A Internalin B; cell adhe 98.9 2.4E-09 8.2E-14 102.8 7.8 167 399-597 44-210 (291)
97 3rfs_A Internalin B, repeat mo 98.9 1.3E-10 4.4E-15 110.7 -1.2 157 452-624 60-216 (272)
98 1p9a_G Platelet glycoprotein I 98.9 1.4E-10 4.8E-15 111.3 -1.2 202 372-600 7-208 (290)
99 1m9s_A Internalin B; cell inva 98.9 2.1E-09 7.1E-14 113.6 7.3 170 374-575 42-211 (605)
100 2xwt_C Thyrotropin receptor; s 98.9 5.8E-11 2E-15 110.8 -4.4 201 375-597 31-236 (239)
101 1io0_A Tropomodulin; LRR prote 98.9 6.7E-08 2.3E-12 85.5 15.6 129 498-630 27-167 (185)
102 2z62_A TOLL-like receptor 4, v 98.8 2.7E-10 9.2E-15 108.9 -0.3 203 375-597 28-234 (276)
103 2o6q_A Variable lymphocyte rec 98.8 2.8E-10 9.6E-15 108.2 -0.6 180 401-598 37-216 (270)
104 2o6q_A Variable lymphocyte rec 98.8 8E-10 2.8E-14 105.1 2.4 182 375-574 37-218 (270)
105 2xwt_C Thyrotropin receptor; s 98.8 1.6E-10 5.6E-15 107.7 -2.5 56 509-571 180-236 (239)
106 2je0_A Acidic leucine-rich nuc 98.8 2.3E-09 7.9E-14 91.5 4.7 59 534-595 87-148 (149)
107 1m9s_A Internalin B; cell inva 98.8 4.8E-09 1.6E-13 110.8 6.4 168 399-598 41-208 (605)
108 1xeu_A Internalin C; cellular 98.7 4E-09 1.4E-13 99.5 2.6 75 509-596 107-181 (263)
109 3m19_A Variable lymphocyte rec 98.7 3.7E-09 1.3E-13 99.2 1.9 61 534-598 130-190 (251)
110 2je0_A Acidic leucine-rich nuc 98.7 9.4E-09 3.2E-13 87.7 4.0 104 509-622 43-149 (149)
111 3m19_A Variable lymphocyte rec 98.7 1.7E-09 5.9E-14 101.5 -0.8 159 455-628 35-193 (251)
112 1p9a_G Platelet glycoprotein I 98.7 3.5E-09 1.2E-13 101.6 0.9 201 347-574 8-208 (290)
113 2ell_A Acidic leucine-rich nuc 98.7 3.3E-09 1.1E-13 92.7 0.3 11 428-438 24-34 (168)
114 2ell_A Acidic leucine-rich nuc 98.6 3.8E-09 1.3E-13 92.3 0.5 86 534-624 70-158 (168)
115 1a9n_A U2A', U2A'; complex (nu 98.5 2.8E-08 9.6E-13 87.4 2.2 130 454-597 18-150 (176)
116 1pgv_A TMD-1, tropomodulin TMD 98.5 1.1E-06 3.6E-11 76.9 11.9 61 535-596 70-135 (197)
117 1xeu_A Internalin C; cellular 98.5 1E-07 3.5E-12 89.8 5.2 82 481-576 106-187 (263)
118 4ay9_X Follicle-stimulating ho 98.5 6.9E-10 2.4E-14 109.9 -10.4 225 349-596 30-255 (350)
119 2xot_A Amphoterin-induced prot 98.4 2.7E-08 9.2E-13 98.9 0.4 157 428-598 39-200 (361)
120 2o6s_A Variable lymphocyte rec 98.4 2.1E-08 7.3E-13 91.0 -0.4 83 509-598 77-159 (208)
121 2v70_A SLIT-2, SLIT homolog 2 98.4 3.3E-08 1.1E-12 90.4 0.7 60 534-597 104-163 (220)
122 1pgv_A TMD-1, tropomodulin TMD 98.4 1.9E-06 6.6E-11 75.2 11.3 115 524-640 31-155 (197)
123 3cvr_A Invasion plasmid antige 98.4 9.8E-08 3.3E-12 99.7 3.3 193 374-610 58-252 (571)
124 1dce_A Protein (RAB geranylger 98.3 8.9E-09 3E-13 108.1 -6.1 124 481-620 441-567 (567)
125 2v9t_B SLIT homolog 2 protein 98.3 8E-08 2.7E-12 87.8 0.8 61 534-598 103-163 (220)
126 2xot_A Amphoterin-induced prot 98.3 1E-07 3.5E-12 94.6 1.5 159 401-574 39-202 (361)
127 3e6j_A Variable lymphocyte rec 98.3 1.7E-07 5.9E-12 86.3 2.5 82 509-598 89-170 (229)
128 3sb4_A Hypothetical leucine ri 98.3 2.3E-07 7.9E-12 90.8 3.4 124 482-619 203-327 (329)
129 1a9n_A U2A', U2A'; complex (nu 98.3 2.7E-07 9.2E-12 81.0 2.2 132 479-624 17-151 (176)
130 2v70_A SLIT-2, SLIT homolog 2 98.2 6.2E-08 2.1E-12 88.6 -2.1 108 509-626 58-165 (220)
131 3l2o_B F-box only protein 4; s 98.2 3.5E-07 1.2E-11 83.5 2.1 39 64-103 3-41 (312)
132 3cvr_A Invasion plasmid antige 98.2 8.8E-07 3E-11 92.5 5.3 129 429-582 121-251 (571)
133 2v9t_B SLIT homolog 2 protein 98.1 1.2E-07 4.2E-12 86.6 -2.4 106 509-623 57-162 (220)
134 2e31_A FBS1, F-box only protei 98.1 1.2E-06 4.1E-11 81.4 4.0 40 63-103 48-88 (297)
135 2o6s_A Variable lymphocyte rec 98.1 2.1E-07 7E-12 84.4 -1.9 107 509-624 53-159 (208)
136 1ds9_A Outer arm dynein; leuci 98.1 3.4E-07 1.2E-11 82.2 -0.7 39 534-573 114-152 (198)
137 1dce_A Protein (RAB geranylger 98.1 2.6E-07 9E-12 96.9 -1.7 79 509-594 487-567 (567)
138 4ay9_X Follicle-stimulating ho 98.0 4E-08 1.4E-12 97.2 -9.0 207 401-627 30-237 (350)
139 3e6j_A Variable lymphocyte rec 98.0 5.2E-07 1.8E-11 83.0 -1.6 108 509-627 65-172 (229)
140 2wfh_A SLIT homolog 2 protein 97.9 3.6E-06 1.2E-10 74.8 1.8 33 455-490 31-63 (193)
141 1w8a_A SLIT protein; signaling 97.9 1.4E-06 4.9E-11 77.5 -0.9 35 455-490 29-63 (192)
142 2wfh_A SLIT homolog 2 protein 97.8 8.5E-07 2.9E-11 79.0 -3.5 126 458-599 13-138 (193)
143 3sb4_A Hypothetical leucine ri 97.8 5.9E-06 2E-10 80.8 1.8 35 191-227 25-59 (329)
144 1w8a_A SLIT protein; signaling 97.7 4E-06 1.4E-10 74.6 -0.1 13 453-465 52-64 (192)
145 2o6r_A Variable lymphocyte rec 97.7 1.3E-06 4.6E-11 76.6 -3.8 128 456-598 8-135 (177)
146 1ds9_A Outer arm dynein; leuci 97.7 2E-06 6.8E-11 77.1 -3.0 146 456-619 24-180 (198)
147 3v7d_B Cell division control p 97.6 1.5E-05 5.1E-10 82.2 2.2 40 63-103 12-51 (464)
148 2o6r_A Variable lymphocyte rec 97.6 1E-05 3.4E-10 71.0 0.5 112 454-575 27-138 (177)
149 4b8c_D Glucose-repressible alc 97.6 8E-06 2.7E-10 88.6 -0.4 113 451-577 220-332 (727)
150 1p22_A F-BOX/WD-repeat protein 97.5 2.5E-05 8.6E-10 79.7 1.5 40 63-103 8-51 (435)
151 2ovr_B FBW7, F-BOX/WD repeat p 97.4 5.6E-05 1.9E-09 77.4 3.7 40 63-103 16-55 (445)
152 3g39_A Variable lymphocyte rec 97.4 1.2E-05 4E-10 69.9 -1.6 60 534-597 53-112 (170)
153 2r9u_A Variable lymphocyte rec 97.3 1.7E-05 5.8E-10 69.1 -2.2 61 534-598 56-116 (174)
154 4fs7_A Uncharacterized protein 97.2 6.4E-06 2.2E-10 82.8 -6.6 126 451-596 249-375 (394)
155 3g39_A Variable lymphocyte rec 97.1 3.5E-05 1.2E-09 66.8 -2.5 106 509-627 10-115 (170)
156 4b8c_D Glucose-repressible alc 96.9 0.00019 6.3E-09 77.9 0.9 132 427-574 223-354 (727)
157 3rw6_A Nuclear RNA export fact 96.8 0.0012 3.9E-08 61.2 5.1 21 474-495 163-183 (267)
158 3rw6_A Nuclear RNA export fact 96.7 0.002 6.8E-08 59.6 6.3 83 533-620 168-258 (267)
159 2r9u_A Variable lymphocyte rec 96.7 0.00014 4.8E-09 63.2 -1.9 86 535-627 33-118 (174)
160 2ifg_A High affinity nerve gro 96.4 0.00016 5.4E-09 71.2 -3.6 83 509-598 32-114 (347)
161 4fdw_A Leucine rich hypothetic 96.3 0.00027 9.3E-09 70.6 -2.6 56 534-596 299-354 (401)
162 4fs7_A Uncharacterized protein 96.0 8.1E-05 2.8E-09 74.7 -8.3 145 454-622 229-375 (394)
163 2ifg_A High affinity nerve gro 96.0 0.00074 2.5E-08 66.3 -1.5 88 479-574 29-116 (347)
164 4fdw_A Leucine rich hypothetic 95.8 0.00055 1.9E-08 68.3 -3.2 236 349-622 113-354 (401)
165 4gt6_A Cell surface protein; l 75.3 0.45 1.5E-05 47.1 -0.8 13 451-463 261-273 (394)
166 4gt6_A Cell surface protein; l 74.8 0.56 1.9E-05 46.4 -0.3 126 478-622 262-387 (394)
167 3rfe_A Platelet glycoprotein I 72.7 1.4 4.7E-05 35.4 1.6 37 535-573 31-67 (130)
168 4h09_A Hypothetical leucine ri 68.2 0.58 2E-05 46.0 -1.9 129 451-596 213-342 (379)
169 4h09_A Hypothetical leucine ri 60.1 1 3.5E-05 44.2 -1.9 107 451-571 236-343 (379)
170 3rfe_A Platelet glycoprotein I 46.8 20 0.00068 28.4 4.1 37 428-467 31-67 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.4e-42 Score=367.95 Aligned_cols=499 Identities=20% Similarity=0.263 Sum_probs=282.3
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecc
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLE 142 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 142 (645)
.+.|+.||||||.+||+||+..+|++++++|||+|+++. . ..|..+.......
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~-~-------------~~~~~l~~~~~~~------------- 55 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-R-------------WCRRKVFIGNCYA------------- 55 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH-H-------------HHCCEEEESSTTS-------------
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh-h-------------hhceEEeeccccc-------------
Confidence 478999999999999999998899999999999999983 2 1232222111000
Q ss_pred cCCCcchhHHHHHhcccCCCCCceEEeccccCCC----------CcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHH
Q 006426 143 GKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTR----------GVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEI 212 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~----------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 212 (645)
.... . ....++++++|+++++.... .....++..+...+++|++|+++++ .+++..+..+
T Consensus 56 ---~~~~---~---~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l 125 (594)
T 2p1m_B 56 ---VSPA---T---VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELI 125 (594)
T ss_dssp ---SCHH---H---HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHH
T ss_pred ---cCHH---H---HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHH
Confidence 0000 0 01224678888887753111 1223456677778888888888887 4777777777
Q ss_pred HhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCC--CCChHHHHHHHhcCCCccEEEecCCC-CcChHHHHH
Q 006426 213 ANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCS--SIGNEGLQAVGRFCPNLKSISIKDCR-LVGDQGIAS 289 (645)
Q Consensus 213 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~ 289 (645)
...+++|++|++.+|..+++.++..+..++++|++|++++|. ......+..+...+++|++|++.++. .++...+..
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 767888888888888667777777777778888888888765 12223344455567888888888775 456666666
Q ss_pred HHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCC-cCchhhhh-hccccCCCCccEE-eeCCCCCCChHH
Q 006426 290 LLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPH-VSERGFWV-MGSGHGLQKLKSL-TITSCMGVTDLG 366 (645)
Q Consensus 290 l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-i~~~~~~~-~~~~~~~~~L~~L-~l~~~~~~~~~~ 366 (645)
+...++. |+.|++.++.. ...+..+...+++|++|.+..+.. +....+.. ......+++|+.| .+. ......
T Consensus 206 l~~~~~~-L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~---~~~~~~ 280 (594)
T 2p1m_B 206 LVTRCPN-LKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW---DAVPAY 280 (594)
T ss_dssp HHHHCTT-CCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCB---TCCGGG
T ss_pred HHHhCCC-CcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCc---ccchhh
Confidence 6655444 88888877621 122455555667777777655432 22222221 1123456677777 333 233444
Q ss_pred HHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEecccc--------
Q 006426 367 LEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSC-------- 438 (645)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------- 438 (645)
+..+...+++|++|++++|. +++.++..+...+++|+.|++.+| +.+.++..+...+ ++|++|++.+|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCS
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccC
Confidence 44444456778888887765 777777776667788888888765 4444554443333 66666666443
Q ss_pred CCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEec-----CCCCCC----ccchHHHHhhcccC
Q 006426 439 LGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLS-----GLQGVT----DAGFLPVLESCEAG 509 (645)
Q Consensus 439 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~i~----~~~~~~l~~~~~~~ 509 (645)
..+++...... ...+++|++|.+. |..+++..+..+...+|+|+.|+++ +|..++ +.++..++..++ +
T Consensus 357 ~~l~~~~l~~l-~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~ 433 (594)
T 2p1m_B 357 VALTEQGLVSV-SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-D 433 (594)
T ss_dssp SCCCHHHHHHH-HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-T
T ss_pred CCCCHHHHHHH-HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-C
Confidence 22222111100 1124555555332 2234555555554445555555555 344444 344444444444 5
Q ss_pred ceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCc
Q 006426 510 LAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNL 589 (645)
Q Consensus 510 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 589 (645)
|++|++++ .+++.++..+.. .+++|+.|++++| .+++.++..+..+|++|++|++++|.+++.++..+. ..+++|
T Consensus 434 L~~L~L~~--~l~~~~~~~l~~-~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L 508 (594)
T 2p1m_B 434 LRRLSLSG--LLTDKVFEYIGT-YAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETM 508 (594)
T ss_dssp CCEEECCS--SCCHHHHHHHHH-HCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGS
T ss_pred ccEEeecC--cccHHHHHHHHH-hchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCC
Confidence 55555544 445554444444 4455555555543 355555544444455555555555555544444443 234555
Q ss_pred cEEecCCCCCCCHHHHHHHHHhccccc
Q 006426 590 QILSLSGCSMVSDKSLGALRKLGQTLL 616 (645)
Q Consensus 590 ~~L~l~~c~~l~~~~~~~~~~~~~~L~ 616 (645)
+.|++++|+. +..++..+...+|.|+
T Consensus 509 ~~L~l~~~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 509 RSLWMSSCSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SEEEEESSCC-BHHHHHHHHHHCTTEE
T ss_pred CEEeeeCCCC-CHHHHHHHHHhCCCCE
Confidence 5555555442 4444444444444443
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=8e-41 Score=360.37 Aligned_cols=495 Identities=17% Similarity=0.211 Sum_probs=312.9
Q ss_pred ccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecccCC
Q 006426 66 IEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLEGKK 145 (645)
Q Consensus 66 ~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (645)
...||||||.+||+||++.+|+.++++|||+|+.+.... +..+... ..+..
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~-~~~l~~~--------------------------~~~~~-- 63 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSET-REHVTMA--------------------------LCYTA-- 63 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH-CCEEEES--------------------------CGGGS--
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhcc-ccEEEEe--------------------------ecccc--
Confidence 348999999999999933999999999999999985221 1111100 00000
Q ss_pred CcchhHHHHHhcccCCCCCceEEeccccC----------CCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhh
Q 006426 146 ATDIRLAAIAVGTASRGGLGKLSIHGNNS----------TRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANG 215 (645)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~----------~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 215 (645)
... .....++++++|+++++.. .......++..+...+++|++|+++++ .+++..+..+...
T Consensus 64 ----~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~ 135 (592)
T 3ogk_B 64 ----TPD---RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKA 135 (592)
T ss_dssp ----CHH---HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHH
T ss_pred ----ChH---HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHh
Confidence 000 0112357899999977421 123445678888889999999999997 6888888887766
Q ss_pred CCC-CCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCC--CChHHHHHHHhcCCCccEEEecCCCC--cChHHHHHH
Q 006426 216 CHQ-LEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSS--IGNEGLQAVGRFCPNLKSISIKDCRL--VGDQGIASL 290 (645)
Q Consensus 216 ~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l 290 (645)
+++ |++|++++|..+++.++..+..++++|++|+|++|.. .....+..+...+++|++|+++++.. +....+..+
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence 776 9999999987678888888888899999999998751 12334667777799999999987763 345667777
Q ss_pred HHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHH
Q 006426 291 LSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAV 370 (645)
Q Consensus 291 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 370 (645)
...++. |+.|++.++.+.. +......+++|++|.+........ ..........+++|+.|.+++. ....+..+
T Consensus 216 ~~~~~~-L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~ 288 (592)
T 3ogk_B 216 ARNCRS-LVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSYM---GPNEMPIL 288 (592)
T ss_dssp HHHCTT-CCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT-CTTSSSCCCCCTTCCEEEETTC---CTTTGGGG
T ss_pred HhhCCC-CcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccc-hHHHHHHhhccccccccCcccc---chhHHHHH
Confidence 666655 9999999987765 334555678999999875322111 0112233456789999999863 33344556
Q ss_pred hhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccc----------cCC
Q 006426 371 GKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVS----------CLG 440 (645)
Q Consensus 371 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~ 440 (645)
...+++|++|++++|. +++.++..+...+++|+.|++. ..+.+.++..+...+ ++|++|++.+ |+.
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCC
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCc
Confidence 6778999999999976 8888887777889999999998 355666666554443 6666666663 444
Q ss_pred CCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecC---CCCCCc----cchHHHHhhcccCceEE
Q 006426 441 IKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSG---LQGVTD----AGFLPVLESCEAGLAKV 513 (645)
Q Consensus 441 l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~i~~----~~~~~l~~~~~~~L~~L 513 (645)
+++...... ...+++|++|++. |..+++..+..+...+++|+.|++.+ |..+++ .++..++..++ +|++|
T Consensus 365 ~~~~~~~~l-~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L 441 (592)
T 3ogk_B 365 VSQRGLIAL-AQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRF 441 (592)
T ss_dssp CCHHHHHHH-HHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEE
T ss_pred cCHHHHHHH-HhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEE
Confidence 443322111 1235555555552 23355555555555555555555542 334443 24444444454 55555
Q ss_pred EccCCC-CCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEE
Q 006426 514 NLSGCV-NLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQIL 592 (645)
Q Consensus 514 ~l~~c~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L 592 (645)
+++.|. .+++..+..+.. .+++|++|++++| ++++.++..+..+|++|++|+|++|.+++.++..+. ..+++|+.|
T Consensus 442 ~L~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L 518 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQ-YSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYL 518 (592)
T ss_dssp EEECCGGGCCHHHHHHHHH-SCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEE
T ss_pred EEecCCCCccHHHHHHHHH-hCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCee
Confidence 555443 245555554444 4555555555543 455555555555555555555555555555444443 245555555
Q ss_pred ecCCCCCCCHHHHHHHHHhcccc
Q 006426 593 SLSGCSMVSDKSLGALRKLGQTL 615 (645)
Q Consensus 593 ~l~~c~~l~~~~~~~~~~~~~~L 615 (645)
++++|. +++.++..+...+|.+
T Consensus 519 ~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 519 WVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp EEESCB-CCTTCTTGGGGCCTTE
T ss_pred ECcCCc-CCHHHHHHHHHhCCCc
Confidence 555544 5544444444333333
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.3e-30 Score=280.89 Aligned_cols=411 Identities=20% Similarity=0.266 Sum_probs=322.7
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHH---HH
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRA---LI 236 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~---~~ 236 (645)
.++++++|+++++ .+++..+..+...+++|++|++.+|..+++..+..+...|++|++|++++|. +++.+ +.
T Consensus 103 ~~~~L~~L~L~~~----~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRM----VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS 177 (594)
T ss_dssp HCTTCCEEEEESC----BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG
T ss_pred hCCCCCeEEeeCc----EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH
Confidence 4679999999998 5788888888888999999999999778888899998899999999999984 44332 34
Q ss_pred HHHhhCCCCcEEeeccCC-CCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeecccc--CCcccH
Q 006426 237 TIAKNCPKLIDLTIESCS-SIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLN--ITDVSL 313 (645)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~--~~~~~~ 313 (645)
.+...+++|++|+++++. .++...+..+...+++|++|++.+|..+ .++..+....+. |+.|.+..+. +....+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQ-LEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTT-CSEEECSBCCCCCCHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCc-ceEcccccccCccchhhH
Confidence 445568899999999886 5777888888888999999999998543 335555555544 9999976653 222222
Q ss_pred H---HHhhcCcccchh-hccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCC
Q 006426 314 A---VIGHYGMAVTDL-FLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLS 389 (645)
Q Consensus 314 ~---~~~~~~~~L~~L-~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 389 (645)
. .....|++|+.+ .+.. .....+... ...+++|++|++++|. +++..+..+...+++|++|++.+| ++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~---~~~~~l~~~--~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~ 326 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWD---AVPAYLPAV--YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IE 326 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBT---CCGGGGGGG--HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GH
T ss_pred HHHHHHHhcCCCcccccCCcc---cchhhHHHH--HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cC
Confidence 2 122566777777 3322 222222211 1246899999999987 888888888889999999999986 77
Q ss_pred HHHHHHHHHhcCCCCeeec--------ccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEe
Q 006426 390 DNGLISFAKAAFSLESLQL--------EECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLS 461 (645)
Q Consensus 390 ~~~l~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 461 (645)
+.++..+...+++|++|++ ..+..+++.++..+...+ ++|++|.+ .|+.+++...... ...+++|++|+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~-~~~~l~~~~~~~l-~~~~~~L~~L~ 403 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLY-FCRQMTNAALITI-ARNRPNMTRFR 403 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEE-EESCCCHHHHHHH-HHHCTTCCEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHH-hcCCcCHHHHHHH-HhhCCCcceeE
Confidence 8888988888999999999 345677777777666555 99999954 5676665433211 23589999999
Q ss_pred cc-----CCCCCC----HHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHh
Q 006426 462 IR-----NCPGFG----DASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAEL 532 (645)
Q Consensus 462 l~-----~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 532 (645)
++ +|..++ +..+..+...|++|+.|++++ .+++.++..+...++ +|+.|+|++| .+++.++..+..
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~-~L~~L~L~~~-~i~~~~~~~l~~- 478 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK-KMEMLSVAFA-GDSDLGMHHVLS- 478 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCT-TCCEEEEESC-CSSHHHHHHHHH-
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhch-hccEeeccCC-CCcHHHHHHHHh-
Confidence 99 567787 778888888899999999976 888888888887676 9999999997 588888888866
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 533 HGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
.+++|++|++++| .+++.++..+...+++|++|++++|++++.++..+. ..+|+|+...+..
T Consensus 479 ~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 479 GCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLNVEVIDE 540 (594)
T ss_dssp HCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEEEEEECS
T ss_pred cCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCEEEEecC
Confidence 6999999999997 569988888888899999999999999999999886 5789998777765
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=1.6e-30 Score=280.02 Aligned_cols=412 Identities=18% Similarity=0.205 Sum_probs=321.0
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCC-ccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHH---H
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPS-LRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRA---L 235 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~---~ 235 (645)
.++++++|+|+++ .+++..+..+...+++ |++|++++|..+++..+..+...|++|++|+|++| .+++.+ +
T Consensus 110 ~~~~L~~L~L~~~----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRM----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESC----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHH
T ss_pred hCCCCCeEEeecc----EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHH
Confidence 4689999999988 5788888888877777 99999999877888888888889999999999998 444332 5
Q ss_pred HHHHhhCCCCcEEeeccCCC--CChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCc--c
Q 006426 236 ITIAKNCPKLIDLTIESCSS--IGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITD--V 311 (645)
Q Consensus 236 ~~~~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~ 311 (645)
..+...+++|++|+++++.. +....+..+...+++|++|++.+|... ++.......+ +|+.|.+....... .
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~---~l~~~~~~~~-~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL---ELVGFFKAAA-NLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG---GGHHHHHHCT-TCCEEEECBCCCCTTCT
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH---HHHHHHhhhh-HHHhhcccccccccchH
Confidence 66777899999999987652 356778888888999999999997632 2334444443 49999997643221 1
Q ss_pred cHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHH
Q 006426 312 SLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN 391 (645)
Q Consensus 312 ~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 391 (645)
........+++|+.+.+..... ..+ ......+++|++|++++|. +++..+..+...+++|++|++.+ .+.+.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~---~~l--~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~ 332 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGP---NEM--PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR 332 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCT---TTG--GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred HHHHHhhccccccccCccccch---hHH--HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence 1111123456777777765421 111 1123457899999999987 88888877778999999999984 57888
Q ss_pred HHHHHHHhcCCCCeeeccc----------ccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEe
Q 006426 392 GLISFAKAAFSLESLQLEE----------CHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLS 461 (645)
Q Consensus 392 ~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 461 (645)
++..+...+++|++|++.+ |..+++.++..+...+ ++|++|++ .|+.+++...... ...+++|++|+
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l-~~~~l~~~~~~~l-~~~~~~L~~L~ 409 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAV-YVSDITNESLESI-GTYLKNLCDFR 409 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEE-EESCCCHHHHHHH-HHHCCSCCEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEe-ecCCccHHHHHHH-HhhCCCCcEEE
Confidence 8999989999999999995 7888888887766655 99999999 6676665433221 12388999999
Q ss_pred ccC---CCCCCH----HHHHHHHhcCCCCcEEEecCCC-CCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 462 IRN---CPGFGD----ASLAVLGKLCPQLQNVDLSGLQ-GVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 462 l~~---~~~~~~----~~l~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
+++ |..+++ ..+..+...|++|+.|+++.|. .+++.++..+...++ +|++|+|++| .+++.++..+.. .
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~n-~l~~~~~~~~~~-~ 486 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-NVRWMLLGYV-GESDEGLMEFSR-G 486 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT-TCCEEEECSC-CSSHHHHHHHHT-C
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc-cceEeeccCC-CCCHHHHHHHHh-c
Confidence 973 445664 4677777889999999998765 488888888888787 9999999986 688888877776 6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
+++|++|+|++|. +++.++..+...+++|++|++++|++++.++..+. ..+|.+....+..
T Consensus 487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNIELIPS 547 (592)
T ss_dssp CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEEEEECC
T ss_pred CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEEEEecC
Confidence 8999999999985 99998888888899999999999999999988887 6788887777765
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.5e-27 Score=246.80 Aligned_cols=419 Identities=19% Similarity=0.264 Sum_probs=269.1
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHH---HHHHHhhCCCCCEEecCCCCCCCHHHHHHH
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEG---LCEIANGCHQLEKLDLCQCPAITDRALITI 238 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 238 (645)
+++++|+++++ .+++..+..+...+++|++|++++| .+++.. +......+++|++|+++++ .+++.++..+
T Consensus 3 ~~l~~L~Ls~~----~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCE----ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESC----CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH
T ss_pred ccceehhhhhc----ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHH
Confidence 46788999877 5777777777788899999999987 477653 4445557899999999986 6888778778
Q ss_pred HhhCC----CCcEEeeccCCCCChHH---HHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcc---cccceeeeccccC
Q 006426 239 AKNCP----KLIDLTIESCSSIGNEG---LQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSAT---YSLEKVKLQRLNI 308 (645)
Q Consensus 239 ~~~~~----~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~---~~L~~L~L~~~~~ 308 (645)
...++ +|++|++++|. +++.+ +......+++|++|+++++. +++.++..+..... .+|++|+++++.+
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 77776 79999999875 66533 33344558899999998876 66666666554322 2366666666665
Q ss_pred CcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhh----cCCccceEEeCC
Q 006426 309 TDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGK----GCPNLKQFCLRK 384 (645)
Q Consensus 309 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~ 384 (645)
++.....+... ...+++|++|+++++. +.+.+...+.. ..++|++|++++
T Consensus 155 ~~~~~~~l~~~-------------------------l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 155 SAASCEPLASV-------------------------LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp BGGGHHHHHHH-------------------------HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred CHHHHHHHHHH-------------------------HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 55443333211 1123556666666543 44444443332 234666666666
Q ss_pred CCCCCHHH---HHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEe
Q 006426 385 CAFLSDNG---LISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLS 461 (645)
Q Consensus 385 ~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 461 (645)
| .+++.+ +......+++|++|+++++ .+++.+...+... ....+++|++|+
T Consensus 209 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~------------------------~~~~~~~L~~L~ 262 (461)
T 1z7x_W 209 C-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPG------------------------LLHPSSRLRTLW 262 (461)
T ss_dssp S-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHH------------------------HTSTTCCCCEEE
T ss_pred C-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHH------------------------HhcCCCCceEEE
Confidence 4 344433 2223334566666666654 3444433322211 022467788888
Q ss_pred ccCCCCCCHHHHHHHH---hcCCCCcEEEecCCCCCCccchHHHHhhc---ccCceEEEccCCCCCChHHHHHHHHh--h
Q 006426 462 IRNCPGFGDASLAVLG---KLCPQLQNVDLSGLQGVTDAGFLPVLESC---EAGLAKVNLSGCVNLTDKVVSTMAEL--H 533 (645)
Q Consensus 462 l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~~L~~L~l~~c~~l~~~~~~~l~~~--~ 533 (645)
+++|. +++.....+. ..+++|++|++++ ..+++.+...+.... .++|++|++++| .+++.+...+... .
T Consensus 263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred CcCCC-CCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhh
Confidence 88774 6666543333 3468888888887 467766665555442 238888888886 4665543333220 3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhc----CCcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCCCCCCCHHHHHH
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADN----CPLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSGCSMVSDKSLGA 607 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~----~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~ 607 (645)
+++|++|++++| .+++.+...+... +++|++|++++|.+++.++..+.. ..+++|+.|++++| .+++.++..
T Consensus 340 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~ 417 (461)
T 1z7x_W 340 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQ 417 (461)
T ss_dssp CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHH
T ss_pred CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHH
Confidence 688999999885 7888776666542 578999999999998876665542 26889999999884 588888777
Q ss_pred HHHhcc----ccccccccccc--CCChHHHHHHHHhcccCccCC
Q 006426 608 LRKLGQ----TLLGLNLQHCN--AISTNSVDMLVEQLWRCDVLS 645 (645)
Q Consensus 608 ~~~~~~----~L~~L~l~~C~--~l~~~~~~~~~~~l~~~~~l~ 645 (645)
+....+ +|+.|.+.++. ....+.++.+.+..|.+.+++
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~s 461 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred HHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEeeC
Confidence 765432 47777776632 234566777788888776654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=5.9e-26 Score=236.40 Aligned_cols=389 Identities=22% Similarity=0.332 Sum_probs=245.3
Q ss_pred CCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHH---HHHhhCCCCcEEeeccCCCCChHHHHHHHhc
Q 006426 191 PSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALI---TIAKNCPKLIDLTIESCSSIGNEGLQAVGRF 267 (645)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 267 (645)
++|++|+++++ .+++..+..+...+++|++|++++| .+++.... .....+++|++|+++++. +++.++..+...
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 56888888875 5777777777778889999999887 57766433 334557888888888754 667677777766
Q ss_pred CC----CccEEEecCCCCcChHHHHHHHHhcc--cccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhh
Q 006426 268 CP----NLKSISIKDCRLVGDQGIASLLSSAT--YSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWV 341 (645)
Q Consensus 268 ~~----~L~~L~l~~~~~~~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 341 (645)
++ +|++|++++|. +++.+...+..... ++|++|+++++.+++.....+....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------- 137 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------------- 137 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---------------------
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---------------------
Confidence 66 68888888775 55554444433211 1244444443333332222221100
Q ss_pred hccccCCCCccEEeeCCCCCCChHHH---HHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhh
Q 006426 342 MGSGHGLQKLKSLTITSCMGVTDLGL---EAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLG 418 (645)
Q Consensus 342 ~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 418 (645)
....++|++|++++|. +++... ......+++|++|+++++ .+++.+...+...+.
T Consensus 138 ---~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~----------------- 195 (461)
T 1z7x_W 138 ---LDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLK----------------- 195 (461)
T ss_dssp ---TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHH-----------------
T ss_pred ---hcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHh-----------------
Confidence 0112344555554432 333221 122223445555555542 244444333332211
Q ss_pred HHHHhhhcCcCCcEEeccccCCCCcccc--ccccccCCCCCcEEeccCCCCCCHHHHHHHHh----cCCCCcEEEecCCC
Q 006426 419 FFGSLLNCGEKLKALSLVSCLGIKDQNL--GVRSVSPCKSLRSLSIRNCPGFGDASLAVLGK----LCPQLQNVDLSGLQ 492 (645)
Q Consensus 419 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~ 492 (645)
...++|++|++++|. +.+... ....+..+++|++|++++|. +++..+..+.. .+++|++|++++|
T Consensus 196 ------~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n- 266 (461)
T 1z7x_W 196 ------DSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC- 266 (461)
T ss_dssp ------HSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred ------cCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-
Confidence 111345555555442 111110 01113457899999999885 77766655543 4799999999995
Q ss_pred CCCccchHHH---HhhcccCceEEEccCCCCCChHHHHHHHHh---hCCCccEEecCCCCCCCHHHH---HHHHhcCCcC
Q 006426 493 GVTDAGFLPV---LESCEAGLAKVNLSGCVNLTDKVVSTMAEL---HGWTLEMLNLDGCRKISDASL---MAIADNCPLL 563 (645)
Q Consensus 493 ~i~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~l---~~l~~~~~~L 563 (645)
.+++.++..+ +..++ +|++|++++| .+++.+...+... ..++|++|++++| .+++.+. ......+++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKE-SLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHHhhCC-CcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCc
Confidence 8888775444 34465 9999999995 7888777766651 1269999999996 6776543 3334568999
Q ss_pred CeeeecCCCCChHHHHHHHhc---CCCCccEEecCCCCCCCHHHHHHHH---HhcccccccccccccCCChHHHHHHHHh
Q 006426 564 CDLDVSKCAVTDFGIASLAHG---NYLNLQILSLSGCSMVSDKSLGALR---KLGQTLLGLNLQHCNAISTNSVDMLVEQ 637 (645)
Q Consensus 564 ~~L~l~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~L~~L~l~~C~~l~~~~~~~~~~~ 637 (645)
++|++++|.+++.++..+... .+++|+.|++++| .+++.++..+. ..+++|++|++++ ++++..++..+.+.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVES 421 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHHHHHH
Confidence 999999999999888777621 2789999999996 58875544433 3478899999999 67999999999987
Q ss_pred ccc
Q 006426 638 LWR 640 (645)
Q Consensus 638 l~~ 640 (645)
++.
T Consensus 422 l~~ 424 (461)
T 1z7x_W 422 VRQ 424 (461)
T ss_dssp HTS
T ss_pred hcc
Confidence 754
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=4.7e-27 Score=233.66 Aligned_cols=292 Identities=20% Similarity=0.255 Sum_probs=200.7
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecc
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLE 142 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 142 (645)
...|+.||+||+.+||+||+ .+|+.+++.|||+|++++.. ...|++++...
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~------------~~~~~~l~l~~---------------- 56 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASD------------ESLWQTLDLTG---------------- 56 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTC------------STTSSEEECTT----------------
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcC------------chhheeecccc----------------
Confidence 57899999999999999999 99999999999999999844 13465554222
Q ss_pred cCCCcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEE
Q 006426 143 GKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKL 222 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 222 (645)
..+.+..+... ..++++.|++.++........ ...+++|++|+++++ .+++..+..+...+++|++|
T Consensus 57 -~~~~~~~~~~~-----~~~~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 57 -KNLHPDVTGRL-----LSQGVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp -CBCCHHHHHHH-----HHTTCSEEECTTCEECSCCCS------CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEE
T ss_pred -ccCCHHHHHhh-----hhccceEEEcCCccccccchh------hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEE
Confidence 11111111111 125788898888743322222 235789999999987 47777777788889999999
Q ss_pred ecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceee
Q 006426 223 DLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVK 302 (645)
Q Consensus 223 ~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 302 (645)
++++| .+++.....+.. +++|++|++++|..+++..+..+...+++|++|++++|..+++.++.......+.+|++|+
T Consensus 124 ~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp ECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred eCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 99997 677776666654 8999999999987788877777777799999999999866887777777666663588888
Q ss_pred eccc--cCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceE
Q 006426 303 LQRL--NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQF 380 (645)
Q Consensus 303 L~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 380 (645)
++++ .+++..+......+++|+.|++.++..+++.....+ ..+++|+.|++++|..+.+..+..+ ..+++|+.|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L 277 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTL 277 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEE
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH---hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEE
Confidence 8887 566555555555666777777766654554443322 3346677777766655555544333 336666777
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCC
Q 006426 381 CLRKCAFLSDNGLISFAKAAFSLE 404 (645)
Q Consensus 381 ~l~~~~~~~~~~l~~~~~~~~~L~ 404 (645)
++++| +++.++..+.+.++.|+
T Consensus 278 ~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 278 QVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp ECTTS--SCTTCHHHHHHHSTTSE
T ss_pred eccCc--cCHHHHHHHHhhCcceE
Confidence 66665 55555555544444433
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.4e-23 Score=226.34 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=67.2
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHH
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIA 239 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 239 (645)
..++|++|++++|.... +... ....+++|++|+++++. +.... ......+++|++|++++| .++...... .
T Consensus 55 ~l~~L~~L~Ls~n~i~~-~~~~----~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~l~~~~-~ 125 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYW-IHED----TFQSQHRLDTLVLTANP-LIFMA-ETALSGPKALKHLFFIQT-GISSIDFIP-L 125 (606)
T ss_dssp TCTTCSEEECTTCCCCE-ECTT----TTTTCTTCCEEECTTCC-CSEEC-TTTTSSCTTCCEEECTTS-CCSCGGGSC-C
T ss_pred cCccceEEECCCCccce-eChh----hccCccccCeeeCCCCc-ccccC-hhhhcccccccEeecccc-CcccCCcch-h
Confidence 34667777777663211 1111 12346677777776642 32211 112335677777777775 344321111 2
Q ss_pred hhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccc--eeeeccccCCcc
Q 006426 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLE--KVKLQRLNITDV 311 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~--~L~L~~~~~~~~ 311 (645)
.++++|++|+++++. +.......+.. +++|+.|++.++. ++......+. .. .+++ .|+++++.+...
T Consensus 126 ~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~-~l-~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 126 HNQKTLESLYLGSNH-ISSIKLPKGFP-TEKLKVLDFQNNA-IHYLSKEDMS-SL-QQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCTTCC-CTTCCEEECCSSC-CCEECHHHHH-TT-TTCCSEEEECTTCCCCEE
T ss_pred ccCCcccEEECCCCc-ccccCcccccC-CcccCEEEcccCc-ccccChhhhh-hh-cccceeEEecCCCccCcc
Confidence 346777777777654 22211122223 6677777777664 3322121121 11 2255 666666665543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.3e-23 Score=222.48 Aligned_cols=426 Identities=17% Similarity=0.156 Sum_probs=228.8
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHH
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIA 239 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 239 (645)
..++|++|+++++.... +... ....+++|++|+++++. +....... ...+++|++|++++| .++......+.
T Consensus 79 ~l~~L~~L~Ls~n~l~~-~~~~----~~~~l~~L~~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~ 150 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIF-MAET----ALSGPKALKHLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSN-HISSIKLPKGF 150 (606)
T ss_dssp TCTTCCEEECTTCCCSE-ECTT----TTSSCTTCCEEECTTSC-CSCGGGSC-CTTCTTCCEEECCSS-CCCCCCCCTTC
T ss_pred CccccCeeeCCCCcccc-cChh----hhcccccccEeeccccC-cccCCcch-hccCCcccEEECCCC-cccccCccccc
Confidence 35788888888874321 1111 13457888999888763 43321111 347788999999886 44432222233
Q ss_pred hhCCCCcEEeeccCCCCChHHHHHHHhcCCCcc--EEEecCCCCcChHHHHHH-------------------HHh-----
Q 006426 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLK--SISIKDCRLVGDQGIASL-------------------LSS----- 293 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~--~L~l~~~~~~~~~~~~~l-------------------~~~----- 293 (645)
. +++|++|+++++. ++......+.. +++|+ .|++.++.. .......+ ...
T Consensus 151 ~-l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~l~L~l~~n~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (606)
T 3t6q_A 151 P-TEKLKVLDFQNNA-IHYLSKEDMSS-LQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226 (606)
T ss_dssp C-CTTCCEEECCSSC-CCEECHHHHHT-TTTCCSEEEECTTCCC-CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCE
T ss_pred C-CcccCEEEcccCc-ccccChhhhhh-hcccceeEEecCCCcc-CccChhHhhhccccccccCCchhHHHHhhhccccc
Confidence 3 7888999988764 44332333444 77888 788877652 11100000 000
Q ss_pred -------------------------cccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 294 -------------------------ATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 294 -------------------------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
...+++.|+++++.++......+ ..+++|+.|++.++. ++. .......+
T Consensus 227 l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~----lp~~l~~l 300 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATH-LSE----LPSGLVGL 300 (606)
T ss_dssp EEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSC-CSC----CCSSCCSC
T ss_pred hhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-ccccCCCEEeccCCc-cCC----CChhhccc
Confidence 00024455555554444332222 234566666666552 211 11123445
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|++|+++++. +..... .....+++|++|+++++...... .......+++|++|+++++.. .............+
T Consensus 301 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 301 STLKKLVLSANK-FENLCQ-ISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLS 376 (606)
T ss_dssp TTCCEEECTTCC-CSBGGG-GCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCT
T ss_pred ccCCEEECccCC-cCcCch-hhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCcc-ccccCcchhcccCC
Confidence 677777777653 332211 12234677777777764211110 011123467777777776532 22110001111227
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|++|+++++.. ... ....+..+++|++|++++|. +...........+++|+.|+++++ .++.... ..+..++
T Consensus 377 ~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~- 449 (606)
T 3t6q_A 377 HLQSLNLSYNEP-LSL--KTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLP- 449 (606)
T ss_dssp TCCEEECCSCSC-EEE--CTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCT-
T ss_pred CCCEEECCCCcC-CcC--CHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCC-
Confidence 777777777542 211 11224567788888888775 221111111234678888888874 3332211 1223344
Q ss_pred CceEEEccCCCCCChHHH---HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcC
Q 006426 509 GLAKVNLSGCVNLTDKVV---STMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGN 585 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~---~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 585 (645)
+|++|++++| .+++..+ ..+. .+++|+.|++++| +++......+ .++++|++|++++|+++......+. .
T Consensus 450 ~L~~L~L~~n-~l~~~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 522 (606)
T 3t6q_A 450 ALQHLNLQGN-HFPKGNIQKTNSLQ--TLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALS--H 522 (606)
T ss_dssp TCCEEECTTC-BCGGGEECSSCGGG--GCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGT--T
T ss_pred CCCEEECCCC-CCCccccccchhhc--cCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhC--c
Confidence 8888888885 4443111 1222 3788899999885 5654322222 4678899999999988887766666 7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 586 YLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 586 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
+++| .|++++| .++......+ ..+++|+.|++++|+
T Consensus 523 l~~L-~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 523 LKGI-YLNLASN-HISIILPSLL-PILSQQRTINLRQNP 558 (606)
T ss_dssp CCSC-EEECCSS-CCCCCCGGGH-HHHHTSSEEECTTCC
T ss_pred cccc-EEECcCC-cccccCHhhc-ccCCCCCEEeCCCCC
Confidence 8888 8999884 4553322222 234678999998854
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.3e-23 Score=224.67 Aligned_cols=228 Identities=17% Similarity=0.092 Sum_probs=130.4
Q ss_pred cCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhh-HHHHhhhcCcCCcEEeccccCCCCccccccccc
Q 006426 373 GCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLG-FFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV 451 (645)
Q Consensus 373 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 451 (645)
.+++|+.|+++++..+... .+ ..+++|+.|+++++. +.... ....+ ...++|++|++++|. +...+ ..+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~---~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~-~~~~~L~~L~L~~n~-l~~~~---~~~ 395 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF---KK-VALPSLSYLDLSRNA-LSFSGCCSYSD-LGTNSLRHLDLSFNG-AIIMS---ANF 395 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC---CC-CCCTTCCEEECCSSC-EEEEEECCHHH-HCCSCCCEEECCSCS-EEEEC---CCC
T ss_pred CCCccceeeccCCcCccch---hh-ccCCCCCEEECcCCc-cCCCcchhhhh-ccCCcccEeECCCCc-cccch---hhc
Confidence 3555555555554222211 11 135666666666542 22211 01111 122777777777754 22222 235
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH-HHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK-VVSTMA 530 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~ 530 (645)
..+++|++|++++|. +...........+++|+.|+++++ .++.... ..+..++ +|++|++++| .+++. ....+.
T Consensus 396 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~ 470 (606)
T 3vq2_A 396 MGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT-NTKIDFD-GIFLGLT-SLNTLKMAGN-SFKDNTLSNVFA 470 (606)
T ss_dssp TTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTS-CCEECCT-TTTTTCT-TCCEEECTTC-EEGGGEECSCCT
T ss_pred cCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCC-CCCccch-hhhcCCC-CCCEEECCCC-cCCCcchHHhhc
Confidence 567888888888875 221111112235688889988885 3332211 1233344 8999999886 44432 111222
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHH-HH
Q 006426 531 ELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGA-LR 609 (645)
Q Consensus 531 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~-~~ 609 (645)
.+++|+.|++++| +++...... ..++++|++|++++|++++.....+. .+++|+.|++++|. ++. ++. +.
T Consensus 471 --~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~-l~~--~p~~~~ 541 (606)
T 3vq2_A 471 --NTTNLTFLDLSKC-QLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYN--QLYSLSTLDCSFNR-IET--SKGILQ 541 (606)
T ss_dssp --TCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTT--TCTTCCEEECTTSC-CCC--EESCGG
T ss_pred --cCCCCCEEECCCC-cCCccChhh-hcccccCCEEECCCCcCCCcCHHHcc--CCCcCCEEECCCCc-Ccc--cCHhHh
Confidence 3789999999985 665432222 24689999999999988776555555 78899999999854 652 222 33
Q ss_pred Hhccccccccccccc
Q 006426 610 KLGQTLLGLNLQHCN 624 (645)
Q Consensus 610 ~~~~~L~~L~l~~C~ 624 (645)
...++|+.|++++++
T Consensus 542 ~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNS 556 (606)
T ss_dssp GSCTTCCEEECCSCC
T ss_pred hhcccCcEEEccCCC
Confidence 333369999999854
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.9e-21 Score=207.04 Aligned_cols=423 Identities=14% Similarity=0.100 Sum_probs=218.2
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHh
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 240 (645)
.+++++|+++++.... +... ....+++|++|+++++ .+..... .....+++|++|++++| .++.........
T Consensus 49 l~~L~~L~Ls~n~i~~-~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 120 (549)
T 2z81_A 49 CANLQVLILKSSRINT-IEGD----AFYSLGSLEHLDLSDN-HLSSLSS-SWFGPLSSLKYLNLMGN-PYQTLGVTSLFP 120 (549)
T ss_dssp CTTCCEEECTTSCCCE-ECTT----TTTTCTTCCEEECTTS-CCCSCCH-HHHTTCTTCCEEECTTC-CCSSSCSSCSCT
T ss_pred CCcccEEECCCCCcCc-cChh----hccccccCCEEECCCC-ccCccCH-HHhccCCCCcEEECCCC-cccccchhhhhh
Confidence 4567777776663221 1111 1234567777777664 2332221 22346667777777765 333211111234
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
++++|++|+++++..++......+. .+++|++|++.++. ++......+ ... .+|+.|++..+.+.... ..+...+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~l-~~l-~~L~~L~l~~n~~~~~~-~~~~~~l 195 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALS-LRNYQSQSL-KSI-RDIHHLTLHLSESAFLL-EIFADIL 195 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETT-CCEECTTTT-TTC-SEEEEEEEECSBSTTHH-HHHHHST
T ss_pred ccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCc-ccccChhhh-hcc-ccCceEecccCcccccc-hhhHhhc
Confidence 4667777777665422221111222 26667777766654 221110011 111 13556666555543322 2223345
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHh---hcCCccceEEeCCCC-----------
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVG---KGCPNLKQFCLRKCA----------- 386 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~----------- 386 (645)
++|+.|++.++. +....+........+++|+.|+++++ .+.+.....+. ..+++|+.+++.+|.
T Consensus 196 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 196 SSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp TTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred ccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 667777766652 22111111111233456666666654 24444333332 234455555554431
Q ss_pred ------------------CCCHH----HHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcc
Q 006426 387 ------------------FLSDN----GLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQ 444 (645)
Q Consensus 387 ------------------~~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 444 (645)
.+... .+..+....++|+.|++.++. +.... ..+....++|++|+++++......
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip--~~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP--CSFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC--HHHHHHCTTCCEEECCSSCCCHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC--HHHHhcCccccEEEccCCcccccc
Confidence 11100 011122345677777777653 32221 111112388888888886533222
Q ss_pred ccccccccCCCCCcEEeccCCCCCCHHH-HHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCCh
Q 006426 445 NLGVRSVSPCKSLRSLSIRNCPGFGDAS-LAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTD 523 (645)
Q Consensus 445 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 523 (645)
+.....+..+++|++|++++|. ++... .......+++|++|+++++ .++. +...+...+ +|++|++++| .++.
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~-~L~~L~Ls~N-~l~~ 424 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQWPE-KMRFLNLSST-GIRV 424 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCCCCT-TCCEEECTTS-CCSC
T ss_pred ccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhcccc-cccEEECCCC-Cccc
Confidence 1111224567889999998886 44332 2234556788999998885 4441 111122233 8889999886 4442
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHH
Q 006426 524 KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDK 603 (645)
Q Consensus 524 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 603 (645)
.. ....++|+.|++++| +++.. ..++++|++|++++|+++.. .... .+++|+.|++++| .++..
T Consensus 425 l~-----~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~l~~i--p~~~--~l~~L~~L~Ls~N-~l~~~ 488 (549)
T 2z81_A 425 VK-----TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNKLKTL--PDAS--LFPVLLVMKISRN-QLKSV 488 (549)
T ss_dssp CC-----TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSCCSSC--CCGG--GCTTCCEEECCSS-CCCCC
T ss_pred cc-----chhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCccCcC--CCcc--cCccCCEEecCCC-ccCCc
Confidence 21 101358899999885 66542 24689999999999987632 2223 6789999999984 56543
Q ss_pred HHHHHHHhccccccccccccc
Q 006426 604 SLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 604 ~~~~~~~~~~~L~~L~l~~C~ 624 (645)
.... ...+++|+.|++++|+
T Consensus 489 ~~~~-~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 489 PDGI-FDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CTTG-GGGCTTCCEEECCSSC
T ss_pred CHHH-HhcCcccCEEEecCCC
Confidence 2222 2345779999999855
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.8e-23 Score=230.44 Aligned_cols=430 Identities=20% Similarity=0.148 Sum_probs=212.3
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHH--H
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALIT--I 238 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~ 238 (645)
.++|++|+++++.....+... .-...+++|++|+++++. +.......+...+++|++|++++| .++...... .
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 173 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTL---TSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVL 173 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGG---GGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHH
T ss_pred CCCCCEEECCCCcCCCcCCCh---HHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhh
Confidence 356677777666321111110 012346667777766542 211111111134566666666665 343322211 1
Q ss_pred HhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhh
Q 006426 239 AKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGH 318 (645)
Q Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 318 (645)
..++++|++|+++++....... + ..+++|++|+++++........ .... .+|+.|+++++.+++.....+ .
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~---~-~~l~~L~~L~Ls~n~l~~~~~~---l~~l-~~L~~L~Ls~n~l~~~~~~~l-~ 244 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD---V-SRCVNLEFLDVSSNNFSTGIPF---LGDC-SALQHLDISGNKLSGDFSRAI-S 244 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB---C-TTCTTCCEEECCSSCCCSCCCB---CTTC-CSCCEEECCSSCCCSCHHHHT-T
T ss_pred hccCCCCCEEECCCCcccccCC---c-ccCCcCCEEECcCCcCCCCCcc---cccC-CCCCEEECcCCcCCCcccHHH-h
Confidence 3445666666666543111110 1 2355666666655542211100 1111 235566666555554333333 2
Q ss_pred cCcccchhhccCCCCcCchh----------------hh--hhccc-cCCCCccEEeeCCCCCCChHHHHHHhhcCCccce
Q 006426 319 YGMAVTDLFLTGLPHVSERG----------------FW--VMGSG-HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQ 379 (645)
Q Consensus 319 ~~~~L~~L~l~~~~~i~~~~----------------~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 379 (645)
.+++|+.|++.++....... +. ..... ..+++|+.|+++++. +.... ......+++|++
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~~ 322 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAV-PPFFGSCSLLES 322 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECC-CGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCcc-chHHhcCCCccE
Confidence 34555555555442110000 00 00001 113566666666542 21111 111245677777
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcE
Q 006426 380 FCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRS 459 (645)
Q Consensus 380 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 459 (645)
|+++++. +...........+++|++|++.++....... ..+....++|+.|+++++......... .....+++|++
T Consensus 323 L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~ 398 (768)
T 3rgz_A 323 LALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQE 398 (768)
T ss_dssp EECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCC--TTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCE
T ss_pred EECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCcccc--HHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccE
Confidence 7777642 2211011112346777777777653211100 011111137777777775422111111 01112678888
Q ss_pred EeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccE
Q 006426 460 LSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEM 539 (645)
Q Consensus 460 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~ 539 (645)
|++++|. +...... ....+++|+.|+++++ .++.... ..+..++ +|+.|++++|. +.......+.. +++|+.
T Consensus 399 L~L~~n~-l~~~~p~-~l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~-~L~~L~L~~n~-l~~~~p~~~~~--l~~L~~ 470 (768)
T 3rgz_A 399 LYLQNNG-FTGKIPP-TLSNCSELVSLHLSFN-YLSGTIP-SSLGSLS-KLRDLKLWLNM-LEGEIPQELMY--VKTLET 470 (768)
T ss_dssp EECCSSE-EEEECCG-GGGGCTTCCEEECCSS-EEESCCC-GGGGGCT-TCCEEECCSSC-CCSCCCGGGGG--CTTCCE
T ss_pred EECCCCc-cccccCH-HHhcCCCCCEEECcCC-cccCccc-HHHhcCC-CCCEEECCCCc-ccCcCCHHHcC--CCCceE
Confidence 8888875 2211111 1235689999999885 3332211 1223344 89999999864 44322233333 789999
Q ss_pred EecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccc
Q 006426 540 LNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLN 619 (645)
Q Consensus 540 L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 619 (645)
|++++| +++..... ...++++|++|++++|++++.....+. .+++|+.|++++|. ++.. ++.....+++|+.|+
T Consensus 471 L~L~~N-~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 471 LILDFN-DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNS-FSGN-IPAELGDCRSLIWLD 544 (768)
T ss_dssp EECCSS-CCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSC-CEEE-CCGGGGGCTTCCEEE
T ss_pred EEecCC-cccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCc-ccCc-CCHHHcCCCCCCEEE
Confidence 999985 55532222 234689999999999988765555555 78899999999854 4422 222233567899999
Q ss_pred ccccc
Q 006426 620 LQHCN 624 (645)
Q Consensus 620 l~~C~ 624 (645)
+++|+
T Consensus 545 Ls~N~ 549 (768)
T 3rgz_A 545 LNTNL 549 (768)
T ss_dssp CCSSE
T ss_pred CCCCc
Confidence 99854
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=2.1e-22 Score=221.94 Aligned_cols=374 Identities=19% Similarity=0.131 Sum_probs=227.4
Q ss_pred HhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHh
Q 006426 187 ARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGR 266 (645)
Q Consensus 187 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 266 (645)
...+++|++|+++++. +.... . ...+++|++|++++| .++.. ... ...+++|++|+++++. ++......+.
T Consensus 174 ~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~- 244 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK-ISGDV--D-VSRCVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGNK-LSGDFSRAIS- 244 (768)
T ss_dssp TTCCTTCCEEECCSSE-EESCC--B-CTTCTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSSC-CCSCHHHHTT-
T ss_pred hccCCCCCEEECCCCc-ccccC--C-cccCCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCCc-CCCcccHHHh-
Confidence 3456666666666542 21100 0 136677777777776 33321 111 3457888888888754 4433333333
Q ss_pred cCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhcccc
Q 006426 267 FCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGH 346 (645)
Q Consensus 267 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~ 346 (645)
.+++|++|++++|......... ...+|++|+++++.+.+.....+...+++|+.|++.++... .. ......
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-~~---~p~~~~ 315 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-GA---VPPFFG 315 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC-----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-EC---CCGGGG
T ss_pred cCCCCCEEECCCCcccCccCcc-----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-Cc---cchHHh
Confidence 4788888888877532111110 12348888888887765544455555688999988877421 11 111235
Q ss_pred CCCCccEEeeCCCCCCC-hHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcC-CCCeeecccccccchhhHHHHhh
Q 006426 347 GLQKLKSLTITSCMGVT-DLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAF-SLESLQLEECHRITQLGFFGSLL 424 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~ 424 (645)
.+++|+.|+++++. +. .... .....+++|++|+++++ .++......+.. ++ +|+.|+++++. +..........
T Consensus 316 ~l~~L~~L~L~~n~-l~~~ip~-~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~-l~~~L~~L~Ls~N~-l~~~~~~~~~~ 390 (768)
T 3rgz_A 316 SCSLLESLALSSNN-FSGELPM-DTLLKMRGLKVLDLSFN-EFSGELPESLTN-LSASLLTLDLSSNN-FSGPILPNLCQ 390 (768)
T ss_dssp GCTTCCEEECCSSE-EEEECCH-HHHTTCTTCCEEECCSS-EEEECCCTTHHH-HTTTCSEEECCSSE-EEEECCTTTTC
T ss_pred cCCCccEEECCCCc-ccCcCCH-HHHhcCCCCCEEeCcCC-ccCccccHHHHh-hhcCCcEEEccCCC-cCCCcChhhhh
Confidence 67899999999864 33 2222 22356899999999986 332211222333 44 99999999864 22221111111
Q ss_pred hcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHh
Q 006426 425 NCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLE 504 (645)
Q Consensus 425 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 504 (645)
...++|++|++.+|......+ ..+..+++|++|++++|. +....... ...+++|+.|+++++ .++..... .+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~-l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~-~~~ 463 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIP---PTLSNCSELVSLHLSFNY-LSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQ-ELM 463 (768)
T ss_dssp STTCCCCEEECCSSEEEEECC---GGGGGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSS-CCCSCCCG-GGG
T ss_pred cccCCccEEECCCCccccccC---HHHhcCCCCCEEECcCCc-ccCcccHH-HhcCCCCCEEECCCC-cccCcCCH-HHc
Confidence 113789999999875332222 235678999999999985 22111112 235699999999985 44432222 223
Q ss_pred hcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhc
Q 006426 505 SCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHG 584 (645)
Q Consensus 505 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 584 (645)
.++ +|++|++++| .++......+.. +++|+.|++++| +++...... ...+++|++|++++|++.......+.
T Consensus 464 ~l~-~L~~L~L~~N-~l~~~~p~~l~~--l~~L~~L~L~~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~-- 535 (768)
T 3rgz_A 464 YVK-TLETLILDFN-DLTGEIPSGLSN--CTNLNWISLSNN-RLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELG-- 535 (768)
T ss_dssp GCT-TCCEEECCSS-CCCSCCCGGGGG--CTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGG--
T ss_pred CCC-CceEEEecCC-cccCcCCHHHhc--CCCCCEEEccCC-ccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHc--
Confidence 344 8999999996 444332233444 899999999995 565332222 34689999999999998755445555
Q ss_pred CCCCccEEecCCCC
Q 006426 585 NYLNLQILSLSGCS 598 (645)
Q Consensus 585 ~~~~L~~L~l~~c~ 598 (645)
.+++|+.|++++|+
T Consensus 536 ~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 536 DCRSLIWLDLNTNL 549 (768)
T ss_dssp GCTTCCEEECCSSE
T ss_pred CCCCCCEEECCCCc
Confidence 78999999999864
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=6.6e-22 Score=213.21 Aligned_cols=230 Identities=19% Similarity=0.146 Sum_probs=105.5
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHH-HHHHHHhcCCCCeeecccccccchhhHHHHhhh
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNG-LISFAKAAFSLESLQLEECHRITQLGFFGSLLN 425 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (645)
.+++|+.|+++++...... ....+++|+.|+++++ .++... .......+++|+.|+++++. +.... ..+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~- 396 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFM- 396 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCT-
T ss_pred CCCccceeeccCCcCccch----hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccch--hhcc-
Confidence 3455555555554322221 1124566666666663 222110 01122346666666666653 22111 1111
Q ss_pred cCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhh
Q 006426 426 CGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES 505 (645)
Q Consensus 426 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 505 (645)
..++|+.|+++++......+. ..+..+++|++|++++|. +...... ....+++|++|+++++ .+++..+...+..
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGN-SFKDNTLSNVFAN 471 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTT
T ss_pred CCCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCC-cCCCcchHHhhcc
Confidence 126666666666432221110 123456666666666664 2111111 1223466666666663 3322112222223
Q ss_pred cccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcC
Q 006426 506 CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGN 585 (645)
Q Consensus 506 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 585 (645)
++ +|++|++++| .++......+.. +++|+.|++++| +++......+ .++++|++|++++|+++..... +. .
T Consensus 472 l~-~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~p~~-~~--~ 542 (606)
T 3vq2_A 472 TT-NLTFLDLSKC-QLEQISWGVFDT--LHRLQLLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNRIETSKGI-LQ--H 542 (606)
T ss_dssp CT-TCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSCCCCEESC-GG--G
T ss_pred CC-CCCEEECCCC-cCCccChhhhcc--cccCCEEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCcCcccCHh-Hh--h
Confidence 33 6666666664 344332222322 566666666664 4443221222 3456666666666665532211 22 4
Q ss_pred CC-CccEEecCCCCC
Q 006426 586 YL-NLQILSLSGCSM 599 (645)
Q Consensus 586 ~~-~L~~L~l~~c~~ 599 (645)
++ +|+.|++++|+.
T Consensus 543 l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCTTCCEEECCSCCC
T ss_pred hcccCcEEEccCCCc
Confidence 44 466666666443
No 15
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1.7e-18 Score=171.89 Aligned_cols=243 Identities=21% Similarity=0.300 Sum_probs=116.4
Q ss_pred CccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcC
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEK 429 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 429 (645)
.++.+++++.. +.+..+..+. .++++.|++.++ .++..... + ..+++|+.|+++++. +...++...+... ++
T Consensus 48 ~~~~l~l~~~~-~~~~~~~~~~--~~~l~~L~l~~n-~l~~~~~~-~-~~~~~L~~L~L~~~~-l~~~~~~~~~~~~-~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKN-LHPDVTGRLL--SQGVIAFRCPRS-FMDQPLAE-H-FSPFRVQHMDLSNSV-IEVSTLHGILSQC-SK 119 (336)
T ss_dssp TSSEEECTTCB-CCHHHHHHHH--HTTCSEEECTTC-EECSCCCS-C-CCCBCCCEEECTTCE-ECHHHHHHHHTTB-CC
T ss_pred hheeecccccc-CCHHHHHhhh--hccceEEEcCCc-cccccchh-h-ccCCCCCEEEccCCC-cCHHHHHHHHhhC-CC
Confidence 35666666532 4433332221 156666666653 22211000 1 135666666666543 3433343333333 55
Q ss_pred CcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccC
Q 006426 430 LKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAG 509 (645)
Q Consensus 430 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~ 509 (645)
|++|++++|. +.+... ..+..+++|++|++++|..+++..+..+...+++|++|++++|..+++.++...+..++.+
T Consensus 120 L~~L~L~~~~-l~~~~~--~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 120 LQNLSLEGLR-LSDPIV--NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CSEEECTTCB-CCHHHH--HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCEEeCcCcc-cCHHHH--HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 6666665543 221111 1133455556666655544555444444445555666665554455554444444444335
Q ss_pred ceEEEccCCC-CCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCC-CCChHHHHHHHhcCCC
Q 006426 510 LAKVNLSGCV-NLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC-AVTDFGIASLAHGNYL 587 (645)
Q Consensus 510 L~~L~l~~c~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~ 587 (645)
|++|++++|. .+++..+..... .+++|+.|++++|..+++..+..+. .+++|++|++++| .+.+.++..+. .++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~--~~~ 272 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG--EIP 272 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG--GCT
T ss_pred CCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHh--cCC
Confidence 5555555543 344444443333 3555555555554334444443332 3555555555555 35555444444 455
Q ss_pred CccEEecCCCCCCCHHHHHHHH
Q 006426 588 NLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 588 ~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
+|+.|++++| +++..+..+.
T Consensus 273 ~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 273 TLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp TCCEEECTTS--SCTTCHHHHH
T ss_pred CCCEEeccCc--cCHHHHHHHH
Confidence 5555555554 5544444443
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.6e-18 Score=179.81 Aligned_cols=213 Identities=21% Similarity=0.186 Sum_probs=123.5
Q ss_pred cCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhh
Q 006426 346 HGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLN 425 (645)
Q Consensus 346 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (645)
..+++|+.|+++++. +.+.. ....+++|++|+++++ .+..... ...+++|+.|++.++. +...+. +.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---l~- 240 (466)
T 1o6v_A 174 ANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNN-QISDITP---LGILTNLDELSLNGNQ-LKDIGT---LA- 240 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GG-
T ss_pred ccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCC-ccccccc---ccccCCCCEEECCCCC-cccchh---hh-
Confidence 455777777777654 33321 1345677888887774 3332111 2346777888777753 332211 11
Q ss_pred cCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhh
Q 006426 426 CGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES 505 (645)
Q Consensus 426 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 505 (645)
..++|+.|++++|.. .... .+..+++|++|++++|. +..... ...+++|+.|+++++ .+++... +..
T Consensus 241 ~l~~L~~L~l~~n~l-~~~~----~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~---~~~ 307 (466)
T 1o6v_A 241 SLTNLTDLDLANNQI-SNLA----PLSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNEN-QLEDISP---ISN 307 (466)
T ss_dssp GCTTCSEEECCSSCC-CCCG----GGTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCSCCGG---GGG
T ss_pred cCCCCCEEECCCCcc-ccch----hhhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCC-cccCchh---hcC
Confidence 227778888777542 2221 14567788888887775 222111 334678888888774 3432211 333
Q ss_pred cccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcC
Q 006426 506 CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGN 585 (645)
Q Consensus 506 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 585 (645)
++ +|+.|++++| .+++... +. .+++|+.|++++| .+++. . ...++++|+.|++++|++++... +. .
T Consensus 308 l~-~L~~L~L~~n-~l~~~~~--~~--~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~--~~--~ 373 (466)
T 1o6v_A 308 LK-NLTYLTLYFN-NISDISP--VS--SLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQISDLTP--LA--N 373 (466)
T ss_dssp CT-TCSEEECCSS-CCSCCGG--GG--GCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSCCCBCGG--GT--T
T ss_pred CC-CCCEEECcCC-cCCCchh--hc--cCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCCccCccch--hh--c
Confidence 44 7888888875 3443321 22 4778888888775 55543 1 23457888888888887765543 33 6
Q ss_pred CCCccEEecCCCC
Q 006426 586 YLNLQILSLSGCS 598 (645)
Q Consensus 586 ~~~L~~L~l~~c~ 598 (645)
+++|+.|++++|.
T Consensus 374 l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 374 LTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCCEE
T ss_pred CCCCCEEeccCCc
Confidence 7788888887754
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=2.9e-18 Score=170.90 Aligned_cols=303 Identities=21% Similarity=0.197 Sum_probs=167.7
Q ss_pred cCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcC
Q 006426 189 GCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFC 268 (645)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 268 (645)
.+++|++|++.++. +.. +.. ...+++|++|++++| .+++... ...+++|++|+++++. ++. +..+ ..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~--~~~-~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~-i~~--~~~~-~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VAS--IQG-IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNK-ITD--ISAL-QNL 109 (347)
T ss_dssp HHTTCSEEECCSSC-CCC--CTT-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCC--CGGG-TTC
T ss_pred hcccccEEEEeCCc-ccc--chh-hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCc-ccC--chHH-cCC
Confidence 35678888887753 322 112 346778888888876 4443221 3457778888877764 332 1122 336
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
++|++|+++++.. .+... ...+
T Consensus 110 ~~L~~L~l~~n~i---------------------------~~~~~-------------------------------~~~l 131 (347)
T 4fmz_A 110 TNLRELYLNEDNI---------------------------SDISP-------------------------------LANL 131 (347)
T ss_dssp TTCSEEECTTSCC---------------------------CCCGG-------------------------------GTTC
T ss_pred CcCCEEECcCCcc---------------------------cCchh-------------------------------hccC
Confidence 6777777766541 11100 1223
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++........ ...+++|++|+++++. +..... ...+++|+.|++.++.. ..... +. ..+
T Consensus 132 ~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~l-~~~~~---~~-~l~ 199 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLNYNQI-EDISP---LA-SLT 199 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECTTSCC-CCCGG---GG-GCT
T ss_pred CceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEccCCcc-ccccc---cc-CCC
Confidence 4555555555432322111 2345566666666542 221111 23456666666665432 21111 11 126
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|++.++. +.+... +..+++|++|++++|. ++.... ...+++|++|+++++ .++.. ..+..++
T Consensus 200 ~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~---~~~~~l~- 265 (347)
T 4fmz_A 200 SLHYFTAYVNQ-ITDITP----VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN-QISDI---NAVKDLT- 265 (347)
T ss_dssp TCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCC---GGGTTCT-
T ss_pred ccceeecccCC-CCCCch----hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC-ccCCC---hhHhcCC-
Confidence 66666666643 222211 3456777777777765 222111 345677888888774 44432 1233344
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|++++| .+++. ..+. .+++|+.|++++| .+++.....+. .+++|++|++++|++++... +. .+++
T Consensus 266 ~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~--~l~~ 334 (347)
T 4fmz_A 266 KLKMLNVGSN-QISDI--SVLN--NLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LA--SLSK 334 (347)
T ss_dssp TCCEEECCSS-CCCCC--GGGG--GCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GG--GCTT
T ss_pred CcCEEEccCC-ccCCC--hhhc--CCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCccccccC--hh--hhhc
Confidence 7888888886 45443 2232 4788999999885 67665554443 58899999999988776533 44 7889
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++++|+
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999998854
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=4.9e-22 Score=212.80 Aligned_cols=423 Identities=14% Similarity=0.095 Sum_probs=216.4
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHh
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 240 (645)
.++++.|++++|... .+... ....+++|++|+++++. +..... .....+++|++|+++++ .++...... ..
T Consensus 51 l~~L~~L~Ls~n~i~-~i~~~----~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCEIQ-TIEDG----AYQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET-NLASLENFP-IG 121 (570)
T ss_dssp CSSCCEEECTTCCCC-EECTT----TTTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTS-CCCCSTTCS-CT
T ss_pred CCCceEEECCCCcCC-ccCcc----cccCchhCCEEeCcCCc-CCccCH-hhhcCcccccccccccc-ccccCCCcc-cc
Confidence 467788888776322 12211 12456788888887752 332111 12346778888888776 343311111 23
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCc--ChHHHHHHHHhcccccceeeeccccCCcccHHHHhh
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLV--GDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGH 318 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 318 (645)
.+++|++|+++++. +....+......+++|++|+++++... ....+..+..- +.....++++++.+.......+..
T Consensus 122 ~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 122 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC-TTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc-chhhhhcccCCCCceecCHHHhcc
Confidence 57788888887754 221111111233778888888776521 11223222210 000155666666555443322221
Q ss_pred cCcccchhhccCCCC---------------------------------cCchhhh---------------------hhcc
Q 006426 319 YGMAVTDLFLTGLPH---------------------------------VSERGFW---------------------VMGS 344 (645)
Q Consensus 319 ~~~~L~~L~l~~~~~---------------------------------i~~~~~~---------------------~~~~ 344 (645)
.+|+.+++.++.. +....+. ....
T Consensus 200 --~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 200 --IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp --CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred --CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence 1344444433210 0000000 0011
Q ss_pred ccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhh
Q 006426 345 GHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLL 424 (645)
Q Consensus 345 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 424 (645)
...+++|+.|+++++. +.. +......+ +|++|++.++. +.. +.. ..+++|+.|++.++........
T Consensus 278 ~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~-~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~----- 343 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCK-FGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE----- 343 (570)
T ss_dssp TGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCB-CSS--CCB--CBCSSCCEEEEESCBSCCBCCC-----
T ss_pred hcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCc-ccc--cCc--ccccccCEEeCcCCcccccccc-----
Confidence 2334666666666542 221 11112233 66777776642 221 111 2356777777766542221111
Q ss_pred hcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHh
Q 006426 425 NCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLE 504 (645)
Q Consensus 425 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 504 (645)
...++|++|+++++. +.........+..+++|++|++++|. +...... ...+++|++|+++++ .++.......+.
T Consensus 344 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCC-ccccccchhhhh
Confidence 223777777777643 22222112224457777888777764 2111100 234678888888774 222211111233
Q ss_pred hcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhc
Q 006426 505 SCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHG 584 (645)
Q Consensus 505 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 584 (645)
.++ +|++|++++| .+.......+. .+++|+.|++++| .+++..+......+++|++|++++|++++.....+.
T Consensus 419 ~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-- 491 (570)
T 2z63_A 419 SLR-NLIYLDISHT-HTRVAFNGIFN--GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-- 491 (570)
T ss_dssp TCT-TCCEEECTTS-CCEECCTTTTT--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--
T ss_pred cCC-CCCEEeCcCC-cccccchhhhh--cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhh--
Confidence 444 8888888886 34332222233 3788999999885 444221222334678999999999988766555555
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 585 NYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 585 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
.+++|+.|++++| .++.... .....+++|+.|++++|+
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence 7889999999885 4554322 222345778999998843
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=191.44 Aligned_cols=413 Identities=13% Similarity=0.073 Sum_probs=205.2
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
++++.|+++++.... +... ....+++|++|+++++ .++... ......+++|++|+++++ .++. +... .
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~----~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTS----DILSLSKLRILIISHN-RIQYLD-ISVFKFNQELEYLDLSHN-KLVK--ISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHH----HHTTCTTCCEEECCSS-CCCEEE-GGGGTTCTTCCEEECCSS-CCCE--EECC--C
T ss_pred ccccEEECCCCcccc-cChh----hccccccccEEecCCC-ccCCcC-hHHhhcccCCCEEecCCC-ceee--cCcc--c
Confidence 689999999885322 2222 2356889999999986 344321 223457889999999997 5553 2222 5
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhccccc--ceeeeccccC--CcccHHHHh
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSL--EKVKLQRLNI--TDVSLAVIG 317 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L--~~L~L~~~~~--~~~~~~~~~ 317 (645)
+++|++|+++++. ++...+......+++|++|+++++. ++...+..+ .+| +.|++.++.+ .......+.
T Consensus 89 l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l-----~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPI-----AHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGG-----TTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred cCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cchhhcccc-----ccceeeEEEeeccccccccccccccc
Confidence 8999999999865 3321111122348899999999876 444332221 225 8888888776 333333222
Q ss_pred hcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCC---C--ChHHHHHHhhcCCccceEEeCCCCCCCHHH
Q 006426 318 HYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMG---V--TDLGLEAVGKGCPNLKQFCLRKCAFLSDNG 392 (645)
Q Consensus 318 ~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~---~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 392 (645)
........+++.++.... .........+++|+.|+++++.. . ....+. ....+++|+.|++.++ .+++..
T Consensus 162 ~l~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~-~l~~~~ 236 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFH---FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI-ETTWNS 236 (520)
T ss_dssp TCCEEEEEEECCSSSCCC---CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE-EEEHHH
T ss_pred ccccceEEEEeccCcchh---hhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc-ccCHHH
Confidence 211111122222221110 00001112344555555544210 0 000111 1223455555555542 233333
Q ss_pred HHHHHH--hcCCCCeeeccccccc------------------------------chhhHHHHhhhcCcCCcEEeccccCC
Q 006426 393 LISFAK--AAFSLESLQLEECHRI------------------------------TQLGFFGSLLNCGEKLKALSLVSCLG 440 (645)
Q Consensus 393 l~~~~~--~~~~L~~L~l~~~~~~------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~ 440 (645)
+..+.. .+++|+.|++.++... ....+...+.. .+|+.|+++++..
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~--~~L~~L~l~~n~l 314 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN--MNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT--CCCSEEEEESSCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccccc--CceeEEEcCCCcc
Confidence 222221 1234555554443210 00111111111 4577777777542
Q ss_pred CCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCcc-chHHHHhhcccCceEEEccCCC
Q 006426 441 IKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDA-GFLPVLESCEAGLAKVNLSGCV 519 (645)
Q Consensus 441 l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~ 519 (645)
..... ...+++|++|++++|. ++......+ ..+++|+.|+++++ .++.- .+...+...+ +|++|++++|
T Consensus 315 -~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~-~L~~L~Ls~N- 384 (520)
T 2z7x_B 315 -VHMLC----PSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMK-SLQQLDISQN- 384 (520)
T ss_dssp -CCCCC----CSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCT-TCCEEECCSS-
T ss_pred -ccccc----hhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCC-CCCEEECCCC-
Confidence 22211 1356777777777765 333222222 34577777777763 44431 2223334444 7777777774
Q ss_pred CCCh-HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC-CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 520 NLTD-KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC-PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 520 ~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
.++. .....+. .+++|+.|++++| .++... ...+ ++|++|++++|+++.. ...+. .+++|+.|++++|
T Consensus 385 ~l~~~l~~~~~~--~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N~l~~i-p~~~~--~l~~L~~L~L~~N 454 (520)
T 2z7x_B 385 SVSYDEKKGDCS--WTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSNKIKSI-PKQVV--KLEALQELNVASN 454 (520)
T ss_dssp CCBCCGGGCSCC--CCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSSCCCCC-CGGGG--GCTTCCEEECCSS
T ss_pred cCCcccccchhc--cCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCCccccc-chhhh--cCCCCCEEECCCC
Confidence 3443 2211111 2567777777774 554321 1223 5777777777776521 11222 5677777777774
Q ss_pred CCCCHHHHHH-HHHhcccccccccccc
Q 006426 598 SMVSDKSLGA-LRKLGQTLLGLNLQHC 623 (645)
Q Consensus 598 ~~l~~~~~~~-~~~~~~~L~~L~l~~C 623 (645)
.++. ++. ....+++|+.|+++++
T Consensus 455 -~l~~--l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 455 -QLKS--VPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp -CCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred -cCCc--cCHHHhccCCcccEEECcCC
Confidence 4542 221 1223456777777773
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=2e-18 Score=172.13 Aligned_cols=305 Identities=18% Similarity=0.187 Sum_probs=205.7
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
.+++|++|++.++.- .. +..+ ..+++|++|+++++. +++... .... .+|+.|+++++.+++.
T Consensus 42 ~l~~L~~L~l~~~~i-~~--~~~~-~~~~~L~~L~l~~n~-i~~~~~---~~~l-~~L~~L~L~~n~i~~~--------- 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKV-AS--IQGI-EYLTNLEYLNLNGNQ-ITDISP---LSNL-VKLTNLYIGTNKITDI--------- 103 (347)
T ss_dssp HHTTCSEEECCSSCC-CC--CTTG-GGCTTCCEEECCSSC-CCCCGG---GTTC-TTCCEEECCSSCCCCC---------
T ss_pred hcccccEEEEeCCcc-cc--chhh-hhcCCccEEEccCCc-cccchh---hhcC-CcCCEEEccCCcccCc---------
Confidence 478899999988652 22 1223 348888999888875 332211 1111 2255555555444321
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhc
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAA 400 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 400 (645)
.....+++|++|+++++. +.+... ...+++|+.|+++++...... .. ...+
T Consensus 104 ----------------------~~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~--~~-~~~l 154 (347)
T 4fmz_A 104 ----------------------SALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDL--SP-LSNM 154 (347)
T ss_dssp ----------------------GGGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCC--GG-GTTC
T ss_pred ----------------------hHHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccc--cc-hhhC
Confidence 112456899999999864 443222 467899999999997555432 22 3568
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
++|+.|++.++....... +. ..++|++|++++|. +.+... +..+++|+.|++++|. +.+... ...+
T Consensus 155 ~~L~~L~l~~~~~~~~~~----~~-~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~~ 220 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP----IA-NLTDLYSLSLNYNQ-IEDISP----LASLTSLHYFTAYVNQ-ITDITP---VANM 220 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GG-GCTTCSEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GGGC
T ss_pred CCCcEEEecCCCcCCchh----hc-cCCCCCEEEccCCc-cccccc----ccCCCccceeecccCC-CCCCch---hhcC
Confidence 999999999875333222 22 23999999999874 333322 5578999999999986 332221 3567
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|++|+++++ .++.... +..++ +|++|++++| .+++. ..+. .+++|+.|++++| .+++. .....+
T Consensus 221 ~~L~~L~l~~n-~l~~~~~---~~~l~-~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~l~~n-~l~~~---~~~~~l 286 (347)
T 4fmz_A 221 TRLNSLKIGNN-KITDLSP---LANLS-QLTWLEIGTN-QISDI--NAVK--DLTKLKMLNVGSN-QISDI---SVLNNL 286 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG---GTTCT-TCCEEECCSS-CCCCC--GGGT--TCTTCCEEECCSS-CCCCC---GGGGGC
T ss_pred CcCCEEEccCC-ccCCCcc---hhcCC-CCCEEECCCC-ccCCC--hhHh--cCCCcCEEEccCC-ccCCC---hhhcCC
Confidence 99999999995 4543332 44455 9999999996 55543 2233 4899999999996 67664 224578
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
++|++|++++|.+++.....+. .+++|+.|++++|+ ++... . ...+++|+.|++++| .++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~N-~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNH-ITDIR--P-LASLSKMDSADFANQ-VIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHH--TCTTCSEEECCSSS-CCCCG--G-GGGCTTCSEESSSCC----
T ss_pred CCCCEEECcCCcCCCcChhHhh--ccccCCEEEccCCc-ccccc--C-hhhhhccceeehhhh-ccc
Confidence 9999999999999988888887 89999999999966 55432 2 345688999999994 454
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=2.1e-18 Score=178.85 Aligned_cols=341 Identities=21% Similarity=0.186 Sum_probs=228.0
Q ss_pred CCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCC
Q 006426 191 PSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPN 270 (645)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 270 (645)
+++++|++.++. +.. +.. ...+++|++|++++| .+++.. . ...+++|++|+++++...... . ...+++
T Consensus 46 ~~l~~L~l~~~~-i~~--l~~-~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKS--IDG-VEYLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNNQIADIT---P-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSC-CCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCG---G-GTTCTT
T ss_pred ccccEEecCCCC-Ccc--Ccc-hhhhcCCCEEECCCC-ccCCch--h-hhccccCCEEECCCCccccCh---h-hcCCCC
Confidence 489999998763 332 222 347899999999997 455422 2 456899999999987532222 1 344899
Q ss_pred ccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCC
Q 006426 271 LKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQK 350 (645)
Q Consensus 271 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~ 350 (645)
|++|++++|....... .... .+|++|+++++.+.+.. ....+++
T Consensus 114 L~~L~L~~n~l~~~~~----~~~l-~~L~~L~l~~n~l~~~~-------------------------------~~~~l~~ 157 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP----LKNL-TNLNRLELSSNTISDIS-------------------------------ALSGLTS 157 (466)
T ss_dssp CCEEECCSSCCCCCGG----GTTC-TTCSEEEEEEEEECCCG-------------------------------GGTTCTT
T ss_pred CCEEECCCCCCCCChH----HcCC-CCCCEEECCCCccCCCh-------------------------------hhccCCc
Confidence 9999998875322211 1112 23666666665543311 1244678
Q ss_pred ccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCC
Q 006426 351 LKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKL 430 (645)
Q Consensus 351 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 430 (645)
|+.|.+++. +.... . ...+++|+.|+++++. ++.. .. ...+++|+.|++.++....... ....++|
T Consensus 158 L~~L~l~~~--~~~~~--~-~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L 223 (466)
T 1o6v_A 158 LQQLSFGNQ--VTDLK--P-LANLTTLERLDISSNK-VSDI--SV-LAKLTNLESLIATNNQISDITP-----LGILTNL 223 (466)
T ss_dssp CSEEEEEES--CCCCG--G-GTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCCCGG-----GGGCTTC
T ss_pred ccEeecCCc--ccCch--h-hccCCCCCEEECcCCc-CCCC--hh-hccCCCCCEEEecCCccccccc-----ccccCCC
Confidence 888888753 22211 1 4578999999999863 4432 22 3568999999999875332222 1223899
Q ss_pred cEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCc
Q 006426 431 KALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGL 510 (645)
Q Consensus 431 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L 510 (645)
++|++++|. +.+.+ .+..+++|++|++++|.-..... ...+++|+.|+++++ .++.... +..++ +|
T Consensus 224 ~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~l~-~L 289 (466)
T 1o6v_A 224 DELSLNGNQ-LKDIG----TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGAN-QISNISP---LAGLT-AL 289 (466)
T ss_dssp CEEECCSSC-CCCCG----GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCCCGG---GTTCT-TC
T ss_pred CEEECCCCC-cccch----hhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCC-ccCcccc---ccCCC-cc
Confidence 999999964 33332 35678999999999986322221 356799999999985 4543322 34455 99
Q ss_pred eEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCcc
Q 006426 511 AKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQ 590 (645)
Q Consensus 511 ~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 590 (645)
+.|++++| .+++... +. .+++|+.|++++| ++++... ...+++|++|++++|.+++. ..+. .+++|+
T Consensus 290 ~~L~L~~n-~l~~~~~--~~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L~ 356 (466)
T 1o6v_A 290 TNLELNEN-QLEDISP--IS--NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDV--SSLA--NLTNIN 356 (466)
T ss_dssp SEEECCSS-CCSCCGG--GG--GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGT--TCTTCC
T ss_pred CeEEcCCC-cccCchh--hc--CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccCCc--hhhc--cCCCCC
Confidence 99999996 4554322 33 4899999999996 6665432 35799999999999998775 3444 899999
Q ss_pred EEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 591 ILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 591 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
.|++++|. +++.. + ...+++|+.|++++|+
T Consensus 357 ~L~l~~n~-l~~~~-~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 357 WLSAGHNQ-ISDLT-P--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EEECCSSC-CCBCG-G--GTTCTTCCEEECCCEE
T ss_pred EEeCCCCc-cCccc-h--hhcCCCCCEEeccCCc
Confidence 99999865 55432 2 3456889999999953
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=3.9e-21 Score=210.07 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH-HHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK-VVSTMAELHGWTLEMLNLDGCRKISDASLMAIADN 559 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~ 559 (645)
++|+.|+++++ .++.... ..+..++ +|+.|+++++ .+... ....+. .+++|+.|++++| ++.......+ ..
T Consensus 381 ~~L~~L~L~~n-~l~~~~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~ 452 (680)
T 1ziw_A 381 SPLHILNLTKN-KISKIES-DAFSWLG-HLEVLDLGLN-EIGQELTGQEWR--GLENIFEIYLSYN-KYLQLTRNSF-AL 452 (680)
T ss_dssp SCCCEEECTTS-CCCEECT-TTTTTCT-TCCEEECCSS-CCEEECCSGGGT--TCTTCCEEECCSC-SEEECCTTTT-TT
T ss_pred CcCceEECCCC-CCCeECh-hhhhCCC-CCCEEeCCCC-cCccccCccccc--CcccccEEecCCC-CcceeChhhh-hc
Confidence 45666666553 3332211 1122233 6777777764 33211 111122 3667777777764 3332211112 24
Q ss_pred CCcCCeeeecCCCCChHH--HHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCCh
Q 006426 560 CPLLCDLDVSKCAVTDFG--IASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIST 628 (645)
Q Consensus 560 ~~~L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 628 (645)
+++|++|++++|.+...+ ...+. .+++|+.|++++| .++.... .....+++|++|++++ ++++.
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~--~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~ 518 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQ--PLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQH-NNLAR 518 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTT--TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCGG
T ss_pred CcccccchhccccccccccCCcccc--cCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCC-CCccc
Confidence 677777777777654221 12233 6788999999884 4553221 1123457799999998 55653
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.8e-20 Score=203.26 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=54.6
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHH-------HHHhcCCcCCeeeecCCCCChHHHHHH
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLM-------AIADNCPLLCDLDVSKCAVTDFGIASL 581 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~-------~l~~~~~~L~~L~l~~~~i~~~~~~~l 581 (645)
+|+.|++++| .++......+.. +++|+.|+++++ .++..... ....++++|++|++++|.++......+
T Consensus 481 ~L~~L~Ls~N-~l~~i~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 481 NLTILDLSNN-NIANINDDMLEG--LEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCEEECCCC-CCCcCChhhhcc--ccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 6777777764 344322222222 566777777663 44432100 012345667777776666553322223
Q ss_pred HhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCCh
Q 006426 582 AHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIST 628 (645)
Q Consensus 582 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 628 (645)
. .+++|+.|++++ +.++.... .....+++|+.|++++ ++++.
T Consensus 557 ~--~l~~L~~L~Ls~-N~l~~l~~-~~~~~l~~L~~L~L~~-N~l~~ 598 (680)
T 1ziw_A 557 K--DLFELKIIDLGL-NNLNTLPA-SVFNNQVSLKSLNLQK-NLITS 598 (680)
T ss_dssp T--TCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECTT-SCCCB
T ss_pred c--cccCcceeECCC-CCCCcCCH-hHhCCCCCCCEEECCC-CcCCc
Confidence 3 566666666665 34442111 1112345566666666 34543
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=3.5e-20 Score=197.31 Aligned_cols=402 Identities=17% Similarity=0.145 Sum_probs=220.9
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHh
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 240 (645)
.++|++|+++++.... +... ....+++|++|+++++. +...........+++|++|++++|..++..... ...
T Consensus 73 l~~L~~L~Ls~n~l~~-~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~ 145 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSS-LSSS----WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFA 145 (549)
T ss_dssp CTTCCEEECTTSCCCS-CCHH----HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTT
T ss_pred cccCCEEECCCCccCc-cCHH----HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHh-hhh
Confidence 4577778887764221 2221 22456778888877652 332111122346677777777776323321111 123
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCC-----------
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNIT----------- 309 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~----------- 309 (645)
++++|++|+++++. ++......+.. +++|++|++.++.. ... ...+... ..+|+.|+++++.+.
T Consensus 146 ~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~~-~~~-~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 146 GLTSLNELEIKALS-LRNYQSQSLKS-IRDIHHLTLHLSES-AFL-LEIFADI-LSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp TCCEEEEEEEEETT-CCEECTTTTTT-CSEEEEEEEECSBS-TTH-HHHHHHS-TTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred cccccCeeeccCCc-ccccChhhhhc-cccCceEecccCcc-ccc-chhhHhh-cccccEEEccCCccccccccccchhh
Confidence 46777777777653 22211112222 45555555555432 111 0111111 122555555555443
Q ss_pred ----------------cccHHHHh---hcCcccchhhccCCCCcCchhh--hhhccccCCCCccEEeeCCCCCCChH---
Q 006426 310 ----------------DVSLAVIG---HYGMAVTDLFLTGLPHVSERGF--WVMGSGHGLQKLKSLTITSCMGVTDL--- 365 (645)
Q Consensus 310 ----------------~~~~~~~~---~~~~~L~~L~l~~~~~i~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--- 365 (645)
+.....+. ..+++++.+++.++.......+ ........+++|+.|.+.++. +...
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~ 299 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLF 299 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGS
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhc
Confidence 33332222 2234455555544421110000 011122445677777776542 2211
Q ss_pred -HHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHH-HHhhhcCcCCcEEeccccCCCCc
Q 006426 366 -GLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFF-GSLLNCGEKLKALSLVSCLGIKD 443 (645)
Q Consensus 366 -~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 443 (645)
.+..+....++|+.|+++++ .+... ...+...+++|+.|+++++. +...... .......++|+.|++++|. +..
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 375 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRS 375 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCC
T ss_pred ccchhhhhhcccceEEEeccC-ccccC-CHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccc
Confidence 01122234678999999985 44421 12333568999999999864 3332211 1112234899999999964 443
Q ss_pred cccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCCh
Q 006426 444 QNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTD 523 (645)
Q Consensus 444 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 523 (645)
.+.....+..+++|++|++++|. ++. +......+++|++|+++++ .++.-. ...+++|++|++++| .++.
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~-----~~~~~~L~~L~Ls~N-~l~~ 445 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSST-GIRVVK-----TCIPQTLEVLDVSNN-NLDS 445 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTS-CCSCCC-----TTSCTTCSEEECCSS-CCSC
T ss_pred cccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCC-Cccccc-----chhcCCceEEECCCC-Chhh
Confidence 32211225678999999999985 431 1111234689999999985 443211 111238999999996 5654
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCC
Q 006426 524 KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVS 601 (645)
Q Consensus 524 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 601 (645)
.. . .+++|+.|++++| +++. +... ..+++|++|++++|+++......+. .+++|+.|++++|+...
T Consensus 446 ~~-----~-~l~~L~~L~Ls~N-~l~~--ip~~-~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 446 FS-----L-FLPRLQELYISRN-KLKT--LPDA-SLFPVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CC-----C-CCTTCCEEECCSS-CCSS--CCCG-GGCTTCCEEECCSSCCCCCCTTGGG--GCTTCCEEECCSSCBCC
T ss_pred hc-----c-cCChhcEEECCCC-ccCc--CCCc-ccCccCCEEecCCCccCCcCHHHHh--cCcccCEEEecCCCccC
Confidence 32 2 4899999999995 7763 2222 3689999999999998765444455 78999999999977543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=189.43 Aligned_cols=411 Identities=14% Similarity=0.057 Sum_probs=243.2
Q ss_pred ceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCC
Q 006426 165 GKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPK 244 (645)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 244 (645)
+.++++++... .++.. ..++|++|+++++. +..... .....+++|++|++++| .++.... ....++++
T Consensus 3 ~~l~ls~n~l~-~ip~~-------~~~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-------LSQKTTILNISQNY-ISELWT-SDILSLSKLRILIISHN-RIQYLDI-SVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCS-SCCCS-------CCTTCSEEECCSSC-CCCCCH-HHHTTCTTCCEEECCSS-CCCEEEG-GGGTTCTT
T ss_pred ceEecCCCCcc-ccccc-------ccccccEEECCCCc-ccccCh-hhccccccccEEecCCC-ccCCcCh-HHhhcccC
Confidence 45677766432 23321 12699999999873 443222 23458999999999997 5654322 23356899
Q ss_pred CcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCccc-
Q 006426 245 LIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAV- 323 (645)
Q Consensus 245 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L- 323 (645)
|++|+++++. ++. +... .+++|++|+++++.. +...+....... .+|+.|+++++.+....+. .+++|
T Consensus 71 L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~L~~N~l-~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~----~l~~L~ 139 (520)
T 2z7x_B 71 LEYLDLSHNK-LVK--ISCH--PTVNLKHLDLSFNAF-DALPICKEFGNM-SQLKFLGLSTTHLEKSSVL----PIAHLN 139 (520)
T ss_dssp CCEEECCSSC-CCE--EECC--CCCCCSEEECCSSCC-SSCCCCGGGGGC-TTCCEEEEEESSCCGGGGG----GGTTSC
T ss_pred CCEEecCCCc-eee--cCcc--ccCCccEEeccCCcc-ccccchhhhccC-CcceEEEecCcccchhhcc----ccccce
Confidence 9999999864 432 1111 589999999999863 221110111122 2499999999888764332 23455
Q ss_pred -chhhccCCCCc-CchhhhhhccccCCCCc----cEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCC---CC--HHH
Q 006426 324 -TDLFLTGLPHV-SERGFWVMGSGHGLQKL----KSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAF---LS--DNG 392 (645)
Q Consensus 324 -~~L~l~~~~~i-~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~--~~~ 392 (645)
+.|++.++... .... ...+..| ..++++++. +...........+++|+.|+++++.. .. ...
T Consensus 140 L~~L~l~~n~l~~~~~~------~~~l~~l~~~~l~l~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKED------PEGLQDFNTESLHIVFPTNK-EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp EEEEEEEECTTTTSSCC------TTTTTTCCEEEEEEECCSSS-CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred eeEEEeecccccccccc------cccccccccceEEEEeccCc-chhhhhhhhhhcccceeeccccccccccccceeecc
Confidence 77777765320 1100 0112222 234444432 11111111224578999999988521 10 112
Q ss_pred HHHHHHhcCCCCeeecccccccchhhHHHHhhh-cCcCCcEEeccccCCCCcccccc-----------------------
Q 006426 393 LISFAKAAFSLESLQLEECHRITQLGFFGSLLN-CGEKLKALSLVSCLGIKDQNLGV----------------------- 448 (645)
Q Consensus 393 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~----------------------- 448 (645)
+.. ...+++|+.|++.++ .+....+...... ..++|++|++++|......+...
T Consensus 213 ~~~-l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~ 290 (520)
T 2z7x_B 213 LAK-LQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290 (520)
T ss_dssp HHG-GGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS
T ss_pred hhh-hccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec
Confidence 222 345899999999875 3444333332211 12689999998875221111110
Q ss_pred --ccccC---CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCCh
Q 006426 449 --RSVSP---CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTD 523 (645)
Q Consensus 449 --~~~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 523 (645)
..+.. .++|++|++++|..... .. ...+++|++|+++++ .+++..... +..++ +|++|++++| .++.
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~-~L~~L~L~~N-~l~~ 362 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHM-LC---PSKISPFLHLDFSNN-LLTDTVFEN-CGHLT-ELETLILQMN-QLKE 362 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCC-CC---CSSCCCCCEEECCSS-CCCTTTTTT-CCCCS-SCCEEECCSS-CCCB
T ss_pred chhhhhcccccCceeEEEcCCCccccc-cc---hhhCCcccEEEeECC-ccChhhhhh-hccCC-CCCEEEccCC-ccCc
Confidence 00111 15699999999863221 10 146799999999994 555422222 23344 9999999996 5665
Q ss_pred HH-H-HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCC-CCccEEecCCCCCC
Q 006426 524 KV-V-STMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNY-LNLQILSLSGCSMV 600 (645)
Q Consensus 524 ~~-~-~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~-~~L~~L~l~~c~~l 600 (645)
.. + ..+. .+++|+.|++++| .++..........+++|++|++++|.+++.... .+ ++|+.|++++| .+
T Consensus 363 l~~~~~~~~--~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l 433 (520)
T 2z7x_B 363 LSKIAEMTT--QMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KI 433 (520)
T ss_dssp HHHHHHHHT--TCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSS-CC
T ss_pred cccchHHHh--hCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCC-cc
Confidence 32 2 3343 4899999999995 665421112234679999999999998864332 23 69999999995 56
Q ss_pred CHHHHHHHHHhcccccccccccccCCC
Q 006426 601 SDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 601 ~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
+ .++.-...+++|+.|++++ ++++
T Consensus 434 ~--~ip~~~~~l~~L~~L~L~~-N~l~ 457 (520)
T 2z7x_B 434 K--SIPKQVVKLEALQELNVAS-NQLK 457 (520)
T ss_dssp C--CCCGGGGGCTTCCEEECCS-SCCC
T ss_pred c--ccchhhhcCCCCCEEECCC-CcCC
Confidence 6 2333223678899999999 4566
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.4e-19 Score=196.00 Aligned_cols=251 Identities=12% Similarity=0.002 Sum_probs=110.1
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCC-CCeeecccccccchhhHHHHhhh
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFS-LESLQLEECHRITQLGFFGSLLN 425 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~ 425 (645)
.+++|+.|+++++. +.. +. ....+++|+.|+++++ .++ .+......+++ |+.|+++++. +.... ..+..
T Consensus 571 ~L~~L~~L~Ls~N~-l~~--lp-~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp--~~~~~ 640 (876)
T 4ecn_A 571 KMVKLGLLDCVHNK-VRH--LE-AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIP--NIFNA 640 (876)
T ss_dssp TCTTCCEEECTTSC-CCB--CC-CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC-CCSCC--SCCCT
T ss_pred cCCCCCEEECCCCC-ccc--ch-hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC-CCcCc--hhhhc
Confidence 34555555555532 221 11 2234555666666553 232 11111223455 6666666543 22111 11111
Q ss_pred c-CcCCcEEeccccCCCCcccccccccc--CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCc---cch
Q 006426 426 C-GEKLKALSLVSCLGIKDQNLGVRSVS--PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTD---AGF 499 (645)
Q Consensus 426 ~-~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~---~~~ 499 (645)
. .++|+.|+++++......+.....+. .+++|+.|++++|. +.. ....+...+++|+.|+++++ .++. ..+
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~ 717 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQK-FPTELFATGSPISTIILSNN-LMTSIPENSL 717 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCS-CCHHHHHTTCCCSEEECCSC-CCSCCCTTSS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCc-cCHHHHccCCCCCEEECCCC-cCCccChHHh
Confidence 0 13366666666543222111110111 23466677776664 321 11223334566777777663 3321 100
Q ss_pred HHH---HhhcccCceEEEccCCCCCChHHHHHHH-HhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecC-----
Q 006426 500 LPV---LESCEAGLAKVNLSGCVNLTDKVVSTMA-ELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSK----- 570 (645)
Q Consensus 500 ~~l---~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~----- 570 (645)
... ...++ +|+.|+|++| .++... ..+. . .+++|+.|+|++| .++. +..-..++++|+.|+|++
T Consensus 718 ~~~~~~l~nl~-~L~~L~Ls~N-~L~~lp-~~l~~~-~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 718 KPKDGNYKNTY-LLTTIDLRFN-KLTSLS-DDFRAT-TLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp SCTTSCCTTGG-GCCEEECCSS-CCCCCC-GGGSTT-TCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ccccccccccC-CccEEECCCC-CCccch-HHhhhc-cCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCcc
Confidence 000 11122 5677777664 344221 1122 1 2566777777663 4543 211223566777777655
Q ss_pred -CCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 571 -CAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 571 -~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
|.+.......+. .+++|+.|++++|. ++. ++.. .+++|+.|+|++|+
T Consensus 791 ~N~l~~~ip~~l~--~L~~L~~L~Ls~N~-L~~--Ip~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 791 GNRILRQWPTGIT--TCPSLIQLQIGSND-IRK--VDEK--LTPQLYILDIADNP 838 (876)
T ss_dssp CCBCCCCCCTTGG--GCSSCCEEECCSSC-CCB--CCSC--CCSSSCEEECCSCT
T ss_pred cccccccChHHHh--cCCCCCEEECCCCC-CCc--cCHh--hcCCCCEEECCCCC
Confidence 333332223333 56677777776643 321 2111 23566777776643
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-20 Score=209.95 Aligned_cols=302 Identities=18% Similarity=0.150 Sum_probs=148.6
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHH-HH
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALIT-IA 239 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~ 239 (645)
.++|+.|+++++.....+.... ...+++|++|+|+++ .+.... ......+++|++|+|++| .+++..... ..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 119 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGSS-KIYFLH-PDAFQGLFHLFELRLYFC-GLSDAVLKDGYF 119 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTTC-CCCEEC-TTSSCSCSSCCCEECTTC-CCSSCCSTTCCC
T ss_pred cccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCCC-cCcccC-HhHccCCcccCEeeCcCC-CCCcccccCccc
Confidence 4677777777763322222221 245677888888765 233221 122346778888888776 444311111 12
Q ss_pred hhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCc--ChHHHHHHHHhcccccceeeeccccCCcccHHHHh
Q 006426 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLV--GDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIG 317 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~ 317 (645)
..+++|++|+++++. +...........+++|++|+++++... ....+..+.. .+|+.|+++.+.+.......+.
T Consensus 120 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~---~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG---KTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp SSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH---CSSCCCEECCSBSCCCCCCCCC
T ss_pred cccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC---CccceEECCCCccccccccchh
Confidence 457788888887754 222111112234778888888776421 1223333221 2477777776665543221111
Q ss_pred hc-----CcccchhhccCCCCcCchhhhhhc-----------------------------------cccCCCCccEEeeC
Q 006426 318 HY-----GMAVTDLFLTGLPHVSERGFWVMG-----------------------------------SGHGLQKLKSLTIT 357 (645)
Q Consensus 318 ~~-----~~~L~~L~l~~~~~i~~~~~~~~~-----------------------------------~~~~~~~L~~L~l~ 357 (645)
.. ...|+.|+++++.. +......+. .....++|+.|+++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGW-TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hcCCccccCceeEEecCCCcC-chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 10 01366666665521 100000000 00012567777777
Q ss_pred CCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccc
Q 006426 358 SCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVS 437 (645)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 437 (645)
++. +.... ......+++|+.|+++++ .++......+ ..+++|+.|+++++. +..... ......++|+.|++++
T Consensus 275 ~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 275 HGF-VFSLN-SRVFETLKDLKVLNLAYN-KINKIADEAF-YGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQK 347 (844)
T ss_dssp TCC-CCEEC-SCCSSSCCCCCEEEEESC-CCCEECTTTT-TTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECCS
T ss_pred CCc-ccccC-hhhhhcCCCCCEEECCCC-cCCCCChHHh-cCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECCC
Confidence 643 32211 112245677777777764 3332211122 346777777777653 221100 0111226777887777
Q ss_pred cCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 006426 438 CLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGL 491 (645)
Q Consensus 438 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 491 (645)
+. +...... .+..+++|++|++++|. ++.. ..+++|+.|.++++
T Consensus 348 N~-i~~~~~~--~~~~l~~L~~L~Ls~N~-l~~i------~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 348 NH-IAIIQDQ--TFKFLEKLQTLDLRDNA-LTTI------HFIPSIPDIFLSGN 391 (844)
T ss_dssp CC-CCCCCSS--CSCSCCCCCEEEEETCC-SCCC------SSCCSCSEEEEESC
T ss_pred CC-CCccChh--hhcCCCCCCEEECCCCC-CCcc------cCCCCcchhccCCC
Confidence 53 3332221 24567788888887765 2211 11467777777663
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.1e-19 Score=195.49 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccC
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNT 201 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 201 (645)
++++.|+|+++.....++.. ...+++|++|+++++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-----l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-----IGQLTELEVLALGSH 115 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-----GGGCTTCCEEESCCG
T ss_pred CCEEEEEecCcccCCcCChH-----HhcCccceEEECcCC
Confidence 56777777776433223321 245677888887664
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=1.3e-18 Score=185.22 Aligned_cols=415 Identities=14% Similarity=0.071 Sum_probs=195.8
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
++++.|+++++.... +.... ...+++|++|+++++ .++... ......+++|++|+++++ .++. +... .
T Consensus 52 ~~L~~L~Ls~N~i~~-~~~~~----~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISE-LRMPD----ISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHN-RLQN--ISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCC-CCGGG----TTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTS-CCCE--ECSC--C
T ss_pred CCcCEEECCCCCccc-cChhh----hccCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCC-cCCc--cCcc--c
Confidence 688888888875322 22222 245778888888876 344321 122346788888888886 4553 2111 5
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccC--CcccHHHHhhc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNI--TDVSLAVIGHY 319 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~~~~~~~ 319 (645)
+++|++|+++++. ++...+......+++|++|+++++. ++...+..+.. -+|+.|+++++.+ +......+...
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~---L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAH---LHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTT---SCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCchhhhhh---ceeeEEEeecccccccccCccccccc
Confidence 7888888888765 3321111122347888888888765 33322222211 0237788877766 33221111110
Q ss_pred CcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChH---HHHHHhhcCCccceEEeCCCCCCCHHHHHHH
Q 006426 320 GMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDL---GLEAVGKGCPNLKQFCLRKCAFLSDNGLISF 396 (645)
Q Consensus 320 ~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 396 (645)
....-.+++..+.... .........+++|+.+++++.. .... ........+++|+.|++.++ .+++..+..+
T Consensus 195 ~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~-~~~~~l~~~~~~l~~l~~L~~L~L~~~-~l~~~~~~~~ 269 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFS---VQVNMSVNALGHLQLSNIKLND-ENCQRLMTFLSELTRGPTLLNVTLQHI-ETTWKCSVKL 269 (562)
T ss_dssp CEEEEEEEECSSSCCC---CCCEEEESSEEEEEEEEEECCS-TTHHHHHHHHHHHHSCSSCEEEEEEEE-EECHHHHHHH
T ss_pred CcceEEEEecCccchh---hhhhhcccccceEEEecccccc-cccchHHHHHHHHhccCcceEEEecCC-cCcHHHHHHH
Confidence 0000011222221110 0000112234566777766532 1111 11112234566666666653 3444433333
Q ss_pred HHh--cCCCCeeeccccccc---ch---------------------------hhHHHHhhhcCcCCcEEeccccCCCCcc
Q 006426 397 AKA--AFSLESLQLEECHRI---TQ---------------------------LGFFGSLLNCGEKLKALSLVSCLGIKDQ 444 (645)
Q Consensus 397 ~~~--~~~L~~L~l~~~~~~---~~---------------------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 444 (645)
... .++|++|++.++... .. ..+...+.. .+|++|+++++.. ...
T Consensus 270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~--~~L~~L~l~~n~~-~~~ 346 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE--MNIKMLSISDTPF-IHM 346 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT--CCCSEEEEESSCC-CCC
T ss_pred HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc--CcceEEEccCCCc-ccc
Confidence 221 235666666554211 00 111111111 4577777776542 111
Q ss_pred ccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCcc-chHHHHhhcccCceEEEccCCCCCCh
Q 006426 445 NLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDA-GFLPVLESCEAGLAKVNLSGCVNLTD 523 (645)
Q Consensus 445 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~ 523 (645)
.. ...+++|++|++++|. ++......+ ..+++|+.|++++ ..++.- .+...+...+ +|+.|++++| .++.
T Consensus 347 ~~----~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~-~L~~L~l~~N-~l~~ 417 (562)
T 3a79_B 347 VC----PPSPSSFTFLNFTQNV-FTDSVFQGC-STLKRLQTLILQR-NGLKNFFKVALMTKNMS-SLETLDVSLN-SLNS 417 (562)
T ss_dssp CC----CSSCCCCCEEECCSSC-CCTTTTTTC-CSCSSCCEEECCS-SCCCBTTHHHHTTTTCT-TCCEEECTTS-CCBS
T ss_pred cC----ccCCCCceEEECCCCc-cccchhhhh-cccCCCCEEECCC-CCcCCcccchhhhcCCC-CCCEEECCCC-cCCC
Confidence 11 1346677777777664 332111111 3356777777766 344431 1122233333 6777777764 3332
Q ss_pred -HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC-CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCC
Q 006426 524 -KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC-PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVS 601 (645)
Q Consensus 524 -~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~ 601 (645)
.....+. .+++|+.|++++| .++.. +...+ ++|++|++++|+++... ..+. .+++|+.|++++ +.++
T Consensus 418 ~~~~~~~~--~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N~l~~ip-~~~~--~l~~L~~L~L~~-N~l~ 486 (562)
T 3a79_B 418 HAYDRTCA--WAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNNRIMSIP-KDVT--HLQALQELNVAS-NQLK 486 (562)
T ss_dssp CCSSCCCC--CCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSSCCCCCC-TTTT--SSCCCSEEECCS-SCCC
T ss_pred ccChhhhc--CcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCCcCcccC-hhhc--CCCCCCEEECCC-CCCC
Confidence 1111111 2466777777663 55432 12223 46777777777655211 1112 566677777766 3344
Q ss_pred HHHHHHH-HHhcccccccccccc
Q 006426 602 DKSLGAL-RKLGQTLLGLNLQHC 623 (645)
Q Consensus 602 ~~~~~~~-~~~~~~L~~L~l~~C 623 (645)
. ++.- ...+++|+.|+++++
T Consensus 487 ~--l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 487 S--VPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp C--CCTTSTTTCTTCCCEECCSC
T ss_pred C--CCHHHHhcCCCCCEEEecCC
Confidence 2 2211 223456667777663
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-20 Score=200.58 Aligned_cols=417 Identities=18% Similarity=0.097 Sum_probs=228.6
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
++++.|+++++.... +... ....+++|++|+++++ .+.... ......+++|++|+++++ .++..... ...+
T Consensus 28 ~~l~~L~Ls~n~l~~-~~~~----~~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH-LGSY----SFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALG-AFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCE-ECTT----TTTTCSSCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECTT-TTTT
T ss_pred ccccEEEccCCccCc-cChh----HhhCCCCceEEECCCC-cCCccC-cccccCchhCCEEeCcCC-cCCccCHh-hhcC
Confidence 579999999885322 2221 2356899999999987 344321 122447899999999997 45442212 2346
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGM 321 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (645)
+++|++|+++++. ++......+ ..+++|++|+++++.... ..+....... .+|+.|+++++.++......+.. ++
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~l~~-~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~ 173 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQS-FKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRV-LH 173 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSCCCC-CCCCGGGGGC-TTCCEEECTTSCCCEECGGGGHH-HH
T ss_pred ccccccccccccc-cccCCCccc-cccccccEEecCCCccce-ecChhhhccc-CCCCEEeCcCCccceecHHHccc-hh
Confidence 8999999999864 332111113 348999999999876322 1111111222 34999999999887654332221 23
Q ss_pred cc----chhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhc------------------------
Q 006426 322 AV----TDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKG------------------------ 373 (645)
Q Consensus 322 ~L----~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------ 373 (645)
++ +.+++.++.. ....... .. ..+|+.|+++++. .....+......
T Consensus 174 ~L~~~~~~L~l~~n~l-~~~~~~~---~~-~~~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPM-NFIQPGA---FK-EIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp TCTTCCCEEECTTCCC-CEECTTT---TT-TCEEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred ccchhhhhcccCCCCc-eecCHHH---hc-cCcceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 44 5666666531 1111000 11 1267777777642 111122222222
Q ss_pred ---------------------------------CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHH
Q 006426 374 ---------------------------------CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFF 420 (645)
Q Consensus 374 ---------------------------------~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 420 (645)
+++|+.|+++++ .+.. +......+ +|+.|++.++.. .....
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--l~~~~~~~-~L~~L~l~~n~~-~~l~~- 321 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIER--VKDFSYNF-GWQHLELVNCKF-GQFPT- 321 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECS--CCBCCSCC-CCSEEEEESCBC-SSCCB-
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchh--hhhhhccC-CccEEeeccCcc-cccCc-
Confidence 344444444432 1110 11111112 444444444321 11110
Q ss_pred HHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHH-HHHHHhcCCCCcEEEecCCCCCCccch
Q 006426 421 GSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDAS-LAVLGKLCPQLQNVDLSGLQGVTDAGF 499 (645)
Q Consensus 421 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~i~~~~~ 499 (645)
...++|++|++.++......+. ..+++|++|++++|. ++... .......+++|+.|+++++ .++....
T Consensus 322 ----~~l~~L~~L~l~~n~~~~~~~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~ 390 (570)
T 2z63_A 322 ----LKLKSLKRLTFTSNKGGNAFSE-----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 390 (570)
T ss_dssp ----CBCSSCCEEEEESCBSCCBCCC-----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE
T ss_pred ----ccccccCEEeCcCCcccccccc-----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccc
Confidence 1225666666666543222211 457888888888775 32111 0111234688888888874 3322111
Q ss_pred HHHHhhcccCceEEEccCCCCCChHHH-HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHH
Q 006426 500 LPVLESCEAGLAKVNLSGCVNLTDKVV-STMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI 578 (645)
Q Consensus 500 ~~l~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~ 578 (645)
. +..++ +|++|++++|. +..... ..+. .+++|+.|++++| .+..... ....++++|++|++++|.+++..+
T Consensus 391 ~--~~~l~-~L~~L~l~~n~-l~~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 391 N--FLGLE-QLEHLDFQHSN-LKQMSEFSVFL--SLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp E--EETCT-TCCEEECTTSE-EESCTTSCTTT--TCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEE
T ss_pred c--ccccC-CCCEEEccCCc-cccccchhhhh--cCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCcCccccc
Confidence 1 33344 88999998853 332211 1122 4789999999986 4443222 223468999999999998764222
Q ss_pred -HHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCCh
Q 006426 579 -ASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIST 628 (645)
Q Consensus 579 -~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 628 (645)
..+. .+++|+.|++++|. ++......+ ..+++|+.|++++| +++.
T Consensus 463 p~~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~ 508 (570)
T 2z63_A 463 PDIFT--ELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKS 508 (570)
T ss_dssp CSCCT--TCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCSC
T ss_pred hhhhh--cccCCCEEECCCCc-cccCChhhh-hcccCCCEEeCCCC-cCCC
Confidence 2233 78899999999854 554322222 34678999999995 5653
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=2.4e-20 Score=207.73 Aligned_cols=327 Identities=15% Similarity=0.073 Sum_probs=183.1
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
++++.|+|+++.... +.... ...+++|++|+++++..+..- -......+++|++|+|++| .++.... ....+
T Consensus 24 ~~l~~LdLs~N~i~~-i~~~~----~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N-~l~~~~p-~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT-VTASS----FPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSS-KIYFLHP-DAFQG 95 (844)
T ss_dssp TTCCEEEEESCCCCE-ECSSS----CSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTC-CCCEECT-TSSCS
T ss_pred CCcCEEECCCCcCCc-cChhH----CcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCC-cCcccCH-hHccC
Confidence 689999999985322 22211 356789999999987332211 1122458899999999997 4554322 22346
Q ss_pred CCCCcEEeeccCCCCChHHHHH-HHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhc-
Q 006426 242 CPKLIDLTIESCSSIGNEGLQA-VGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHY- 319 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~- 319 (645)
+++|++|+++++. ++...... ....+++|++|+++++...+ .......... .+|+.|+++++.++......+...
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccc-cccchhHhhC-CCCCEEECCCCcCCeeCHHHccccc
Confidence 8999999999875 33211111 12458999999999986322 2111112222 349999999998766433322211
Q ss_pred CcccchhhccCCCCcCchh--hhhhccccCCCCccEEeeCCCCCCChHHHHHHh--------------------------
Q 006426 320 GMAVTDLFLTGLPHVSERG--FWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVG-------------------------- 371 (645)
Q Consensus 320 ~~~L~~L~l~~~~~i~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------- 371 (645)
.++|+.|++..+....... +......-....|+.|+++++. +.......+.
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 2688999988774322111 1000000011248999998752 2211111110
Q ss_pred ---------h--cCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCC
Q 006426 372 ---------K--GCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLG 440 (645)
Q Consensus 372 ---------~--~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 440 (645)
. .+++|+.|+++++ .+..... .....+++|+.|++.++. +..... ..+ ...++|++|+++++.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~~-~~~-~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNS-RVFETLKDLKVLNLAYNK-INKIAD-EAF-YGLDNLQVLNLSYNL- 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTC-CCCEECS-CCSSSCCCCCEEEEESCC-CCEECT-TTT-TTCSSCCEEEEESCC-
T ss_pred cCCCChhhhhccccCCccEEECCCC-cccccCh-hhhhcCCCCCEEECCCCc-CCCCCh-HHh-cCCCCCCEEECCCCC-
Confidence 0 1367888888774 3332111 112357888888888753 222111 111 223788999988864
Q ss_pred CCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCC
Q 006426 441 IKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGC 518 (645)
Q Consensus 441 l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 518 (645)
+.... ...+..+++|++|++++|. +...... ....+++|+.|+++++ .++.-.. .+ +|+.|+++++
T Consensus 326 l~~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~------~~-~L~~L~l~~N 391 (844)
T 3j0a_A 326 LGELY--SSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF------IP-SIPDIFLSGN 391 (844)
T ss_dssp CSCCC--SCSCSSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS------CC-SCSEEEEESC
T ss_pred CCccC--HHHhcCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCCC-CCCcccC------CC-CcchhccCCC
Confidence 22221 1235578899999998875 3221111 1234689999999884 4432211 22 5666666553
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=7.5e-19 Score=182.29 Aligned_cols=262 Identities=14% Similarity=0.058 Sum_probs=140.0
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHH-hcCCCCeeecccccccchhhHHHH---
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAK-AAFSLESLQLEECHRITQLGFFGS--- 422 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--- 422 (645)
.+++|++|+++++. +.......+...+++|++|+++++ .++......+.. ..++|+.|++.++.. ........
T Consensus 127 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~ 203 (455)
T 3v47_A 127 PLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWE 203 (455)
T ss_dssp TCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHH
T ss_pred CcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcc-cccchhhcccc
Confidence 45778888887653 333222222356788888888774 332211111111 125677777766532 11110000
Q ss_pred -h--hhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHH---------HHHHH-HhcCCCCcEEEec
Q 006426 423 -L--LNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDA---------SLAVL-GKLCPQLQNVDLS 489 (645)
Q Consensus 423 -~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------~l~~l-~~~~~~L~~L~l~ 489 (645)
. ....++|++|+++++......+.........++|+.|+++++...... ....+ ...+++|+.|+++
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 0 001256777777775432222111111112356667776655311100 00000 0113678888888
Q ss_pred CCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeec
Q 006426 490 GLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVS 569 (645)
Q Consensus 490 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~ 569 (645)
++ .++... ...+..++ +|++|++++| .++......+.. +++|+.|++++| .++..... ...++++|++|+++
T Consensus 284 ~n-~l~~~~-~~~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 284 KS-KIFALL-KSVFSHFT-DLEQLTLAQN-EINKIDDNAFWG--LTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLS 355 (455)
T ss_dssp SS-CCCEEC-TTTTTTCT-TCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECC
T ss_pred Cc-cccccc-hhhcccCC-CCCEEECCCC-cccccChhHhcC--cccCCEEECCCC-ccCCcChh-HhcCcccCCEEECC
Confidence 73 444321 12233344 8889998885 555443333333 788999999884 66543222 23468889999999
Q ss_pred CCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccc
Q 006426 570 KCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHC 623 (645)
Q Consensus 570 ~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 623 (645)
+|.++......+. .+++|+.|++++ +.++..... ....+++|+.|+++++
T Consensus 356 ~N~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 356 YNHIRALGDQSFL--GLPNLKELALDT-NQLKSVPDG-IFDRLTSLQKIWLHTN 405 (455)
T ss_dssp SSCCCEECTTTTT--TCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCcccccChhhcc--ccccccEEECCC-CccccCCHh-HhccCCcccEEEccCC
Confidence 9888766555555 788899999988 446532211 2234577889999883
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=7.6e-19 Score=182.25 Aligned_cols=367 Identities=14% Similarity=0.070 Sum_probs=168.5
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
+++++|+++++.... +... ....+++|++|+++++. +...........+++|++|++++| .++..... ...+
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~----~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNET----SFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETG-AFNG 101 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTT----TTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTC-TTCEECTT-TTTT
T ss_pred CccCEEEecCCccCc-CChh----HhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCC-ccCccChh-hccC
Confidence 678888888874321 1111 13457788888888763 221111122346788888888886 44432111 2245
Q ss_pred CCCCcEEeeccCCCCChHHHHH-HHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 242 CPKLIDLTIESCSSIGNEGLQA-VGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
+++|++|+++++. ++...... ....+++|++|+++++.. .......+.... .+|+.|+++++.+.......+...
T Consensus 102 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l- 177 (455)
T 3v47_A 102 LANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNF- 177 (455)
T ss_dssp CTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGG-
T ss_pred cccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCcc-CccCcccccCCC-CcccEEeCCCCcccccChhhhhcc-
Confidence 7888888888764 43322222 123377888888877652 211111111111 225666665555443222111110
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHH-----HH--HHhhcCCccceEEeCCCCCCCHHHH
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLG-----LE--AVGKGCPNLKQFCLRKCAFLSDNGL 393 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~--~~~~~~~~L~~L~l~~~~~~~~~~l 393 (645)
...+|+.|+++++. +.+.. .. .....+++|++|+++++ .++....
T Consensus 178 --------------------------~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~ 229 (455)
T 3v47_A 178 --------------------------QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMA 229 (455)
T ss_dssp --------------------------TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHH
T ss_pred --------------------------ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccch
Confidence 11456666666542 11110 00 00113467777777773 5655544
Q ss_pred HHHHHh--cCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHH
Q 006426 394 ISFAKA--AFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDA 471 (645)
Q Consensus 394 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 471 (645)
..+... .++|+.|++.++...... +.. .. +.+.......-...++|++|++++|. +...
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~------~~-----------~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 290 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSS-FGH------TN-----------FKDPDNFTFKGLEASGVKTCDLSKSK-IFAL 290 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCC-TTC------CS-----------SCCCCTTTTGGGTTSCCCEEECCSSC-CCEE
T ss_pred hhhhccccccceeeEeeccccccccc-cch------hh-----------hccCcccccccccccCceEEEecCcc-cccc
Confidence 444432 266777776654321110 000 00 00000000000012445555555443 2111
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHH
Q 006426 472 SLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDA 551 (645)
Q Consensus 472 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 551 (645)
... ....+++|++|+++++ .++...... +..++ +|++|++++| .++......+.. +++|+.|++++| +++..
T Consensus 291 ~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~ 362 (455)
T 3v47_A 291 LKS-VFSHFTDLEQLTLAQN-EINKIDDNA-FWGLT-HLLKLNLSQN-FLGSIDSRMFEN--LDKLEVLDLSYN-HIRAL 362 (455)
T ss_dssp CTT-TTTTCTTCCEEECTTS-CCCEECTTT-TTTCT-TCCEEECCSS-CCCEECGGGGTT--CTTCCEEECCSS-CCCEE
T ss_pred chh-hcccCCCCCEEECCCC-cccccChhH-hcCcc-cCCEEECCCC-ccCCcChhHhcC--cccCCEEECCCC-ccccc
Confidence 101 1122355555555542 333211111 11222 5666666654 333332222222 566777777663 55433
Q ss_pred HHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 552 SLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 552 ~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
....+ .++++|++|++++|+++......+. .+++|+.|++++|+
T Consensus 363 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 363 GDQSF-LGLPNLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTTT-TTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred Chhhc-cccccccEEECCCCccccCCHhHhc--cCCcccEEEccCCC
Confidence 22222 3467777777777766553333333 56677777776643
No 34
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.4e-16 Score=157.30 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=100.1
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhc---C---------CCCcEEEecCCCCCCccchHH---HHhhcccCceEEEcc
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKL---C---------PQLQNVDLSGLQGVTDAGFLP---VLESCEAGLAKVNLS 516 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~---------~~L~~L~l~~~~~i~~~~~~~---l~~~~~~~L~~L~l~ 516 (645)
..+++|++|++++|. +++.....+... + ++|++|++++ ..+++.++.. .+..++ +|++|+++
T Consensus 119 ~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~-~L~~L~L~ 195 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHR-LLHTVKMV 195 (386)
T ss_dssp HHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCT-TCCEEECC
T ss_pred HhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHHHHHHHHhCC-CcCEEECc
Confidence 345666777776665 444333333322 2 6777777776 4565555553 233444 67777777
Q ss_pred CCCCCChHHHHHHHH---hhCCCccEEecCCCCCCCHHHHHHH---HhcCCcCCeeeecCCCCChHHHHHHHh----cCC
Q 006426 517 GCVNLTDKVVSTMAE---LHGWTLEMLNLDGCRKISDASLMAI---ADNCPLLCDLDVSKCAVTDFGIASLAH----GNY 586 (645)
Q Consensus 517 ~c~~l~~~~~~~l~~---~~~~~L~~L~l~~c~~l~~~~l~~l---~~~~~~L~~L~l~~~~i~~~~~~~l~~----~~~ 586 (645)
+| .+++.++..+.. ..+++|+.|+|++| .+++.+...+ ...+++|++|+|++|.+++.+...+.. ..+
T Consensus 196 ~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 196 QN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp SS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred CC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 74 566554333221 13567777777764 5665443332 345677777777777777765554442 126
Q ss_pred CCccEEecCCCCCCCHHHHHH----HHHhcccccccccccccCCChHH--HHHHHHhc
Q 006426 587 LNLQILSLSGCSMVSDKSLGA----LRKLGQTLLGLNLQHCNAISTNS--VDMLVEQL 638 (645)
Q Consensus 587 ~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~l~~C~~l~~~~--~~~~~~~l 638 (645)
++|+.|++++| .++..++.. +...+++|+.|++++ +.++..+ +..+.+.+
T Consensus 274 ~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 274 IGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG-NRFSEEDDVVDEIREVF 329 (386)
T ss_dssp CCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCTTSHHHHHHHHHH
T ss_pred CCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC-CcCCcchhHHHHHHHHh
Confidence 77777777763 466543322 223346677777777 4465544 44444433
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=5.6e-16 Score=156.55 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=88.3
Q ss_pred CCCcEEeccCCCCCCHHHHH---HHHhcCCCCcEEEecCCCCCCccchHHHHh----hcccCceEEEccCCCCCChHHHH
Q 006426 455 KSLRSLSIRNCPGFGDASLA---VLGKLCPQLQNVDLSGLQGVTDAGFLPVLE----SCEAGLAKVNLSGCVNLTDKVVS 527 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~c~~l~~~~~~ 527 (645)
++|++|++++|. +++..+. .....+++|++|++++| .+++.++..+.. .++ +|++|+|++| .+++.+..
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n-~l~~~g~~ 234 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQ-ELKVLDLQDN-TFTHLGSS 234 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCT-TCCEEECCSS-CCHHHHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCC-CccEEECcCC-CCCcHHHH
Confidence 455555555544 3322222 22224566666666663 555555433332 333 6777777764 45544433
Q ss_pred HHHH--hhCCCccEEecCCCCCCCHHHHHHHHhc-----CCcCCeeeecCCCCChHHHHHHHh---cCCCCccEEecCCC
Q 006426 528 TMAE--LHGWTLEMLNLDGCRKISDASLMAIADN-----CPLLCDLDVSKCAVTDFGIASLAH---GNYLNLQILSLSGC 597 (645)
Q Consensus 528 ~l~~--~~~~~L~~L~l~~c~~l~~~~l~~l~~~-----~~~L~~L~l~~~~i~~~~~~~l~~---~~~~~L~~L~l~~c 597 (645)
.+.. ..+++|++|+|++| .+++.+...+... +++|++|+|++|.+++.++..+.. ..+++|+.|++++|
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 3321 03577777777774 6776654443322 677777777777777765444432 24677777777774
Q ss_pred CCCCHHH--HHHHHHhccccccccccc
Q 006426 598 SMVSDKS--LGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 598 ~~l~~~~--~~~~~~~~~~L~~L~l~~ 622 (645)
.++... +..+....++++.+.+..
T Consensus 314 -~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 314 -RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp -BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred -cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 355444 455555555555554433
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=2.5e-18 Score=182.93 Aligned_cols=416 Identities=13% Similarity=0.054 Sum_probs=239.7
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
...+.++++++... .++.. ..++|++|+++++. +.... ......+++|++|++++| .++.... ....+
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~-------~~~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 98 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKD-------LPPRTKALSLSQNS-ISELR-MPDISFLSELRVLRLSHN-RIRSLDF-HVFLF 98 (562)
T ss_dssp --CCEEECTTSCCC-SCCTT-------SCTTCCEEECCSSC-CCCCC-GGGTTTCTTCCEEECCSC-CCCEECT-TTTTT
T ss_pred CCCcEEEcCCCCCc-cCCCC-------CCCCcCEEECCCCC-ccccC-hhhhccCCCccEEECCCC-CCCcCCH-HHhCC
Confidence 44578888887533 23331 13789999999863 43321 122357899999999997 5554222 22345
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGM 321 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (645)
+++|++|+++++. ++. +... .+++|++|+++++. ++...+....... .+|+.|+++++.+....+..+...
T Consensus 99 l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~L-- 169 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNL-TKLTFLGLSAAKFRQLDLLPVAHL-- 169 (562)
T ss_dssp CTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGC-TTCCEEEEECSBCCTTTTGGGTTS--
T ss_pred CCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCC-ccccCchHhhccc-CcccEEecCCCccccCchhhhhhc--
Confidence 8999999999865 332 1111 48899999999876 3321110111122 248999999888776433332111
Q ss_pred ccchhhccCCCCc-CchhhhhhccccCCCCcc----EEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHH---HH
Q 006426 322 AVTDLFLTGLPHV-SERGFWVMGSGHGLQKLK----SLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN---GL 393 (645)
Q Consensus 322 ~L~~L~l~~~~~i-~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~l 393 (645)
+|+.|++.++... +.... ..+..|. .++++++. +...........+++|+.|+++++. ..-. +.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~------~~l~~l~~~~l~l~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~l~~~ 241 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGET------ESLQIPNTTVLHLVFHPNS-LFSVQVNMSVNALGHLQLSNIKLND-ENCQRLMTF 241 (562)
T ss_dssp CEEEEEEEESSCCCCSSSC------CEEEECCEEEEEEEECSSS-CCCCCCEEEESSEEEEEEEEEECCS-TTHHHHHHH
T ss_pred eeeEEEeecccccccccCc------ccccccCcceEEEEecCcc-chhhhhhhcccccceEEEecccccc-cccchHHHH
Confidence 3377777665320 11000 1111111 33444322 1111111112346789999998742 2111 12
Q ss_pred HHHHHhcCCCCeeecccccccchhhHHHHhhh-cCcCCcEEeccccCCCCcccccc------------------------
Q 006426 394 ISFAKAAFSLESLQLEECHRITQLGFFGSLLN-CGEKLKALSLVSCLGIKDQNLGV------------------------ 448 (645)
Q Consensus 394 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~------------------------ 448 (645)
......+++|+.|.+.++. +....+...... ..++|++|++++|......+...
T Consensus 242 ~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p 320 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSC
T ss_pred HHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecC
Confidence 2223457899999988753 333333222211 12589999998875322221110
Q ss_pred -ccc---cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH
Q 006426 449 -RSV---SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK 524 (645)
Q Consensus 449 -~~~---~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 524 (645)
..+ ....+|++|+++++.-... . ....+++|++|+++++ .+++.... .+..++ +|+.|+++++ .++..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~-~---~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~-~L~~L~L~~N-~l~~~ 392 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHM-V---CPPSPSSFTFLNFTQN-VFTDSVFQ-GCSTLK-RLQTLILQRN-GLKNF 392 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCC-C---CCSSCCCCCEEECCSS-CCCTTTTT-TCCSCS-SCCEEECCSS-CCCBT
T ss_pred hhhhhhhhccCcceEEEccCCCcccc-c---CccCCCCceEEECCCC-ccccchhh-hhcccC-CCCEEECCCC-CcCCc
Confidence 000 0125799999999863221 1 1135699999999984 55542222 223344 9999999995 56642
Q ss_pred H-H-HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCC-CCccEEecCCCCCCC
Q 006426 525 V-V-STMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNY-LNLQILSLSGCSMVS 601 (645)
Q Consensus 525 ~-~-~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~-~~L~~L~l~~c~~l~ 601 (645)
. + ..+. .+++|+.|+++++ .++..........+++|++|++++|.+++.... .+ ++|+.|++++| .++
T Consensus 393 ~~~~~~~~--~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~ 463 (562)
T 3a79_B 393 FKVALMTK--NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIM 463 (562)
T ss_dssp THHHHTTT--TCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCC
T ss_pred ccchhhhc--CCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCc
Confidence 2 1 2233 4899999999995 665411112234679999999999998864322 34 69999999985 566
Q ss_pred HHHHHHHHHhcccccccccccccCCC
Q 006426 602 DKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 602 ~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
. ++.-....++|+.|++++ ++++
T Consensus 464 ~--ip~~~~~l~~L~~L~L~~-N~l~ 486 (562)
T 3a79_B 464 S--IPKDVTHLQALQELNVAS-NQLK 486 (562)
T ss_dssp C--CCTTTTSSCCCSEEECCS-SCCC
T ss_pred c--cChhhcCCCCCCEEECCC-CCCC
Confidence 2 332222567899999999 6676
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5e-17 Score=166.96 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=15.7
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
++|++|++++|+++... +. .+++|+.|++++
T Consensus 318 ~~L~~L~L~~N~l~~l~---l~--~l~~L~~L~l~~ 348 (457)
T 3bz5_A 318 PKLVYLYLNNTELTELD---VS--HNTKLKSLSCVN 348 (457)
T ss_dssp TTCCEEECTTCCCSCCC---CT--TCTTCSEEECCS
T ss_pred ccCCEEECCCCcccccc---cc--cCCcCcEEECCC
Confidence 45555555555544421 22 455555555555
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=1.1e-18 Score=187.76 Aligned_cols=381 Identities=12% Similarity=0.042 Sum_probs=212.2
Q ss_pred HhhCCCCCEEecCCCCCCCHH----------------HHHHHHh--hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEE
Q 006426 213 ANGCHQLEKLDLCQCPAITDR----------------ALITIAK--NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSI 274 (645)
Q Consensus 213 ~~~~~~L~~L~L~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 274 (645)
...+++|++|+|+++ .++.. .+..... ++++|++|++++|..... ....+ ..+++|+.|
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTT-TTCSSCCEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHH-hcCCCCCEE
Confidence 457788888888886 45541 0111222 578888888887652221 11223 337888888
Q ss_pred EecCCCCcCh-HHHHHHHHh----cccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCC
Q 006426 275 SIKDCRLVGD-QGIASLLSS----ATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQ 349 (645)
Q Consensus 275 ~l~~~~~~~~-~~~~~l~~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~ 349 (645)
+++++..++. .-...+... ...+|+.|+++++.++..........+++|+.|++.++...... .....++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-----p~~~~l~ 353 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-----PAFGSEI 353 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-----CCCEEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch-----hhhCCCC
Confidence 8888764554 222222211 11348888888888774332113345678888888776321011 0234567
Q ss_pred CccEEeeCCCCCCChHHHHHHhhcCCc-cceEEeCCCCCCCHHHHHHHHHh--cCCCCeeecccccccchhhHHHHh---
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGKGCPN-LKQFCLRKCAFLSDNGLISFAKA--AFSLESLQLEECHRITQLGFFGSL--- 423 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~--- 423 (645)
+|+.|+++++. +. .+......+++ |++|+++++ .++. +...... +++|+.|+++++.. ....-..+.
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~ 426 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHN-KLKY--IPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFDPLD 426 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSS-CCSS--CCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSCTTC
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCC-cCcc--cchhhhhcccCccCEEECcCCcC-CCcchhhhcccc
Confidence 88888888753 33 11112345677 899998884 3441 2211111 34788888887632 221100000
Q ss_pred --hhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhc-------CCCCcEEEecCCCCC
Q 006426 424 --LNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKL-------CPQLQNVDLSGLQGV 494 (645)
Q Consensus 424 --~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~-------~~~L~~L~l~~~~~i 494 (645)
....++|+.|+++++. +..++.. .+..+++|++|++++|. ++.... ..... +++|+.|+++++ .+
T Consensus 427 ~~~~~~~~L~~L~Ls~N~-l~~lp~~--~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N-~l 500 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQ-ISKFPKE--LFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTSIDLRFN-KL 500 (636)
T ss_dssp SSCCCCCCEEEEECCSSC-CCSCCTH--HHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCEEECCSS-CC
T ss_pred cccccCCCCCEEECcCCc-cCcCCHH--HHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCccEEECcCC-cC
Confidence 0012688899998854 3333221 23457889999998875 331110 11111 128999999884 55
Q ss_pred CccchHHHHh--hcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCC-----CCCCHHHHHHHHhcCCcCCeee
Q 006426 495 TDAGFLPVLE--SCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGC-----RKISDASLMAIADNCPLLCDLD 567 (645)
Q Consensus 495 ~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c-----~~l~~~~l~~l~~~~~~L~~L~ 567 (645)
+. +...+. ..+ +|+.|+|++| .++.. ...+.. +++|+.|+++++ +++....... ..++++|++|+
T Consensus 501 ~~--lp~~~~~~~l~-~L~~L~Ls~N-~l~~i-p~~~~~--l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~ 572 (636)
T 4eco_A 501 TK--LSDDFRATTLP-YLVGIDLSYN-SFSKF-PTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQ 572 (636)
T ss_dssp CB--CCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGGG--CSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEE
T ss_pred Cc--cChhhhhccCC-CcCEEECCCC-CCCCc-Chhhhc--CCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEE
Confidence 52 222222 344 8999999985 55542 122333 889999999652 2222221112 24689999999
Q ss_pred ecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCH---HHHHHHHHhccc---ccccccccccCCC
Q 006426 568 VSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSD---KSLGALRKLGQT---LLGLNLQHCNAIS 627 (645)
Q Consensus 568 l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~---~~~~~~~~~~~~---L~~L~l~~C~~l~ 627 (645)
+++|.++... ..-.++|+.|++++|+..+. ...+.+...... .+..++.+|+.+.
T Consensus 573 Ls~N~l~~ip-----~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 573 IGSNDIRKVN-----EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCSSCCCBCC-----SCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCCcCCccC-----HhHhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 9999874321 11337999999999653221 112333322222 3456788898764
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.8e-17 Score=181.18 Aligned_cols=326 Identities=12% Similarity=0.054 Sum_probs=161.2
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhc------ccccceeeeccccCCcccHH
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSA------TYSLEKVKLQRLNITDVSLA 314 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~~~L~~L~L~~~~~~~~~~~ 314 (645)
++++|++|+|++|...... ...+ ..+++|+.|+++++..++...+..-.... .++|+.|+++++.++.....
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i-P~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL-PDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC-CGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccC-hHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4566666666655321110 1122 23566666666665433331111111111 11366666666666532211
Q ss_pred HHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCc-cceEEeCCCCCCCHHHH
Q 006426 315 VIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPN-LKQFCLRKCAFLSDNGL 393 (645)
Q Consensus 315 ~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~l 393 (645)
.....+++|+.|+++++. +. .+ .....+++|+.|+++++. +.. +......+++ |+.|+++++ .++. +
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~--~l---p~~~~L~~L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N-~L~~--l 634 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VR--HL---EAFGTNVKLTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHN-KLKY--I 634 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CC--BC---CCCCTTSEESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSS-CCCS--C
T ss_pred hhhhcCCCCCEEECCCCC-cc--cc---hhhcCCCcceEEECcCCc-ccc--chHHHhhccccCCEEECcCC-CCCc--C
Confidence 122344666666666653 22 11 133556777777777653 331 1111234566 777777774 3331 1
Q ss_pred HHHHHhc--CCCCeeecccccccchhh-HH-HHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCC
Q 006426 394 ISFAKAA--FSLESLQLEECHRITQLG-FF-GSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFG 469 (645)
Q Consensus 394 ~~~~~~~--~~L~~L~l~~~~~~~~~~-~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 469 (645)
......+ ++|+.|+++++....... +. .......++|+.|++++|. +..++.. .+..+++|+.|++++|. +.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~--~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTE--LFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHH--HHHTTCCCSEEECCSCC-CS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHH--HHccCCCCCEEECCCCc-CC
Confidence 1111112 337777777653211100 00 0000012477888887754 3322211 12356788888888774 32
Q ss_pred HHHHHHHHh-------cCCCCcEEEecCCCCCCccchHHHHh--hcccCceEEEccCCCCCChHHHHHHHHhhCCCccEE
Q 006426 470 DASLAVLGK-------LCPQLQNVDLSGLQGVTDAGFLPVLE--SCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEML 540 (645)
Q Consensus 470 ~~~l~~l~~-------~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L 540 (645)
... ..+.. .|++|+.|+++++ .++ .+...+. ..+ +|+.|+|++| .++.. ...+. .+++|+.|
T Consensus 711 ~ip-~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~lp~~l~~~~l~-~L~~L~Ls~N-~L~~l-p~~l~--~L~~L~~L 781 (876)
T 4ecn_A 711 SIP-ENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SLSDDFRATTLP-YLSNMDVSYN-CFSSF-PTQPL--NSSQLKAF 781 (876)
T ss_dssp CCC-TTSSSCTTSCCTTGGGCCEEECCSS-CCC--CCCGGGSTTTCT-TCCEEECCSS-CCSSC-CCGGG--GCTTCCEE
T ss_pred ccC-hHHhccccccccccCCccEEECCCC-CCc--cchHHhhhccCC-CcCEEEeCCC-CCCcc-chhhh--cCCCCCEE
Confidence 110 00111 1237888888874 444 1222221 334 8888888885 45442 12233 37888888
Q ss_pred ecCCCC-----CCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCC
Q 006426 541 NLDGCR-----KISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSM 599 (645)
Q Consensus 541 ~l~~c~-----~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~ 599 (645)
+|+++. ++..... ....++++|++|+|++|+++.. ...-.++|+.|+|++|+.
T Consensus 782 ~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L~~I-----p~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKV-----DEKLTPQLYILDIADNPN 839 (876)
T ss_dssp ECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBC-----CSCCCSSSCEEECCSCTT
T ss_pred ECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCCCcc-----CHhhcCCCCEEECCCCCC
Confidence 887632 3322111 1224689999999999987432 111346899999998664
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-16 Score=164.03 Aligned_cols=341 Identities=15% Similarity=0.134 Sum_probs=189.1
Q ss_pred cCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcC
Q 006426 189 GCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFC 268 (645)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 268 (645)
.+++|++|+++++ .++.. .. ...+++|++|++++| .++... ...+++|++|+++++. ++... + ..+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~~-l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~---~-~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--TG-IEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNK-LTNLD---V-TPL 105 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--TT-GGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCC---C-TTC
T ss_pred HcCCCCEEEccCC-CcccC--hh-hcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCC-Cceee---c-CCC
Confidence 3579999999986 35432 22 458899999999997 565532 3568999999999875 33321 3 348
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
++|++|+++++. ++... ... ..+|+.|+++++.++... ...+++|+.|++..+..+.... ...+
T Consensus 106 ~~L~~L~L~~N~-l~~l~----~~~-l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------~~~l 169 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD----VSQ-NPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD------VTPQ 169 (457)
T ss_dssp TTCCEEECCSSC-CSCCC----CTT-CTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC------CTTC
T ss_pred CcCCEEECCCCc-CCeec----CCC-CCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc------cccC
Confidence 899999999875 33221 111 234788888777766542 2334556666665553332221 2334
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +.... ...+++|+.|+++++ .++... ...+++|+.|+++++. ++... + ...+
T Consensus 170 ~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~-l~~ip----~-~~l~ 233 (457)
T 3bz5_A 170 TQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNK-LTEID----V-TPLT 233 (457)
T ss_dssp TTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCC----C-TTCT
T ss_pred CcCCEEECCCCc-cceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCc-ccccC----c-cccC
Confidence 556666666542 33211 234555666666553 232211 1234555555555532 22211 1 1125
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|+++++. +...+ ...+++|+.|++++ .+|+.|+++++....... ...++
T Consensus 234 ~L~~L~l~~N~-l~~~~-----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~- 286 (457)
T 3bz5_A 234 QLTYFDCSVNP-LTELD-----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCR- 286 (457)
T ss_dssp TCSEEECCSSC-CSCCC-----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCT-
T ss_pred CCCEEEeeCCc-CCCcC-----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccc-
Confidence 55555555532 22221 22344444444432 234444555443222211 12233
Q ss_pred CceEEEccCCCCCChHHH-----H--HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHH
Q 006426 509 GLAKVNLSGCVNLTDKVV-----S--TMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASL 581 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~-----~--~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l 581 (645)
+|+.|++++|..+..... . .+. .+++|+.|++++ ++++.. . ..+|++|+.|++++|++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~--~~~~L~~L~L~~-N~l~~l---~-l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLS--QNPKLVYLYLNN-TELTEL---D-VSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCT--TCTTCCEEECTT-CCCSCC---C-CTTCTTCSEEECCSSCCCB------
T ss_pred cCCEEECCCCcccceeccCCCcceEechh--hcccCCEEECCC-Cccccc---c-cccCCcCcEEECCCCCCCC------
Confidence 777777777653322110 0 011 357888888887 466653 1 3468999999999998875
Q ss_pred HhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 582 AHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 582 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
++.|..|.+.+ +.++.. ..+..|+.+++++ ++++
T Consensus 354 ----l~~L~~L~l~~-n~l~g~------~~~~~l~~l~l~~-N~l~ 387 (457)
T 3bz5_A 354 ----FSSVGKIPALN-NNFEAE------GQTITMPKETLTN-NSLT 387 (457)
T ss_dssp ----CTTGGGSSGGG-TSEEEE------EEEEECCCBCCBT-TBEE
T ss_pred ----ccccccccccC-CcEEec------ceeeecCcccccc-CcEE
Confidence 35777778876 445432 2345688888888 6665
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=3.6e-17 Score=165.60 Aligned_cols=318 Identities=14% Similarity=0.091 Sum_probs=188.0
Q ss_pred hCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhc
Q 006426 215 GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSA 294 (645)
Q Consensus 215 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 294 (645)
.+++++.|+++++ .++.... .+...+++|++|+++++. ++......+. .+++|++|+++++. ++......+ ...
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~-~~~~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~-~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPA-ALLDSFRQVELLNLNDLQ-IEEIDTYAFA-YAHTIQKLYMGFNA-IRYLPPHVF-QNV 116 (390)
T ss_dssp GGCCCSEEEEESC-EESEECT-HHHHHCCCCSEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCCCCTTTT-TTC
T ss_pred ccCCceEEEecCC-chhhCCh-hHhcccccCcEEECCCCc-ccccChhhcc-CCCCcCEEECCCCC-CCcCCHHHh-cCC
Confidence 4689999999986 4443222 234568999999998864 4332222233 37888888888765 221110000 111
Q ss_pred ccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcC
Q 006426 295 TYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGC 374 (645)
Q Consensus 295 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 374 (645)
.+|+.|+++++.++.... . ....+++|++|+++++. +..... .....+
T Consensus 117 -~~L~~L~L~~n~l~~l~~-----------------------~------~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l 164 (390)
T 3o6n_A 117 -PLLTVLVLERNDLSSLPR-----------------------G------IFHNTPKLTTLSMSNNN-LERIED-DTFQAT 164 (390)
T ss_dssp -TTCCEEECCSSCCCCCCT-----------------------T------TTTTCTTCCEEECCSSC-CCBCCT-TTTSSC
T ss_pred -CCCCEEECCCCccCcCCH-----------------------H------HhcCCCCCcEEECCCCc-cCccCh-hhccCC
Confidence 125555555444332110 0 01346788888888753 333221 123567
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
++|++|+++++ .++... ...+++|+.|++.++. +.... ..++|++|+++++. +...+. ...
T Consensus 165 ~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~-l~~~~-------~~~~L~~L~l~~n~-l~~~~~-----~~~ 225 (390)
T 3o6n_A 165 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIAVEELDASHNS-INVVRG-----PVN 225 (390)
T ss_dssp TTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCSSCSEEECCSSC-CCEEEC-----CCC
T ss_pred CCCCEEECCCC-cCCccc----cccccccceeeccccc-ccccC-------CCCcceEEECCCCe-eeeccc-----ccc
Confidence 88999999884 444322 2357889999888753 32211 12688899988853 333322 235
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
++|++|++++|. +++. .....+++|++|+++++ .++...... +...+ +|++|++++| .++..... . . .+
T Consensus 226 ~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~-~L~~L~L~~n-~l~~~~~~-~-~-~l 294 (390)
T 3o6n_A 226 VELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQ-RLERLYISNN-RLVALNLY-G-Q-PI 294 (390)
T ss_dssp SSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCEEESGG-GTTCS-SCCEEECCSS-CCCEEECS-S-S-CC
T ss_pred ccccEEECCCCC-Cccc---HHHcCCCCccEEECCCC-cCCCcChhH-ccccc-cCCEEECCCC-cCcccCcc-c-C-CC
Confidence 789999999886 3332 12345689999999884 555432222 23334 8889999885 45442211 1 1 36
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHH
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
++|+.|++++| .++.... . ...+++|++|++++|+++... + ..+++|+.|+++++ .++......+.
T Consensus 295 ~~L~~L~L~~n-~l~~~~~-~-~~~l~~L~~L~L~~N~i~~~~---~--~~~~~L~~L~l~~N-~~~~~~~~~~~ 360 (390)
T 3o6n_A 295 PTLKVLDLSHN-HLLHVER-N-QPQFDRLENLYLDHNSIVTLK---L--STHHTLKNLTLSHN-DWDCNSLRALF 360 (390)
T ss_dssp TTCCEEECCSS-CCCCCGG-G-HHHHTTCSEEECCSSCCCCCC---C--CTTCCCSEEECCSS-CEEHHHHHHHT
T ss_pred CCCCEEECCCC-cceecCc-c-ccccCcCCEEECCCCccceeC---c--hhhccCCEEEcCCC-CccchhHHHHH
Confidence 88888888885 5653221 1 234688888888888876653 2 26788888888884 46655554443
No 42
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.2e-14 Score=145.16 Aligned_cols=246 Identities=16% Similarity=0.108 Sum_probs=133.2
Q ss_pred CCccEEeeCCCCCCChHHH---HHHhhcCC-ccceEEeCCCCCCCHHHHHHHH---Hhc-CCCCeeecccccccchhhHH
Q 006426 349 QKLKSLTITSCMGVTDLGL---EAVGKGCP-NLKQFCLRKCAFLSDNGLISFA---KAA-FSLESLQLEECHRITQLGFF 420 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~l~~~~---~~~-~~L~~L~l~~~~~~~~~~~~ 420 (645)
++|++|+++++. +.+... ......++ +|++|+++++ .+++.+...+. ... ++|++|+++++. +++.+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 447777777653 444333 22234456 7888888774 45443333332 222 777888777753 3332222
Q ss_pred ---HHhhhcCcCCcEEeccccCCCCcccccc--ccccC-CCCCcEEeccCCCCCCHHHHHHH---HhcCC-CCcEEEecC
Q 006426 421 ---GSLLNCGEKLKALSLVSCLGIKDQNLGV--RSVSP-CKSLRSLSIRNCPGFGDASLAVL---GKLCP-QLQNVDLSG 490 (645)
Q Consensus 421 ---~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~-~~~L~~L~l~~~~~~~~~~l~~l---~~~~~-~L~~L~l~~ 490 (645)
..+....++|++|++++|. +++..... ..+.. .++|++|++++|. +++.....+ ...++ +|++|++++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecC
Confidence 2222222567777776654 33322211 01222 3578888888775 443222222 22234 788888887
Q ss_pred CCCCCccchHHHH---hhcccCceEEEccCCCCCChHHHHHHHHh---hCCCccEEecCCCCCCCHHHH---HHHHhcCC
Q 006426 491 LQGVTDAGFLPVL---ESCEAGLAKVNLSGCVNLTDKVVSTMAEL---HGWTLEMLNLDGCRKISDASL---MAIADNCP 561 (645)
Q Consensus 491 ~~~i~~~~~~~l~---~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~l---~~l~~~~~ 561 (645)
| .+++.+...+. ..++++|++|+|++| .+++.+...+... ..++|++|++++| .+++.+. ..+...++
T Consensus 177 n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 177 N-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp S-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTT
T ss_pred C-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCC
Confidence 3 55555544333 233237888888875 5665333322220 1347888888774 6665333 33334567
Q ss_pred cCCeeeecCCC---CChHHHHHHHh--cCCCCccEEecCCCCCCCHH
Q 006426 562 LLCDLDVSKCA---VTDFGIASLAH--GNYLNLQILSLSGCSMVSDK 603 (645)
Q Consensus 562 ~L~~L~l~~~~---i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~ 603 (645)
+|++|++++|. +++.++..+.. ..+++|+.|++++ +.+.+.
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~ 299 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPS 299 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGG
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCc
Confidence 78888888776 66666666552 2556677777877 446544
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=1.6e-16 Score=160.92 Aligned_cols=317 Identities=14% Similarity=0.088 Sum_probs=205.2
Q ss_pred CCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCC
Q 006426 190 CPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCP 269 (645)
Q Consensus 190 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 269 (645)
+++++.|++.++. +..- ...+...+++|++|+++++ .++...... ...+++|++|+++++. ++......+ ..++
T Consensus 44 l~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 117 (390)
T ss_dssp GCCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred cCCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCCC-CCcCCHHHh-cCCC
Confidence 5799999998852 3321 1233458899999999997 455432222 3458999999999865 333221223 3489
Q ss_pred CccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCC
Q 006426 270 NLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQ 349 (645)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~ 349 (645)
+|++|+++++. ++..... .... ..+|+.|+++++.+...... ....++
T Consensus 118 ~L~~L~L~~n~-l~~l~~~-~~~~-l~~L~~L~L~~n~l~~~~~~-----------------------------~~~~l~ 165 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRG-IFHN-TPKLTTLSMSNNNLERIEDD-----------------------------TFQATT 165 (390)
T ss_dssp TCCEEECCSSC-CCCCCTT-TTTT-CTTCCEEECCSSCCCBCCTT-----------------------------TTSSCT
T ss_pred CCCEEECCCCc-cCcCCHH-HhcC-CCCCcEEECCCCccCccChh-----------------------------hccCCC
Confidence 99999999876 3211100 0111 12377777776655432111 124468
Q ss_pred CccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcC
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEK 429 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 429 (645)
+|+.|+++++. +.... ...+++|+.|+++++ .++.. ...++|+.|++.++. +..... ...++
T Consensus 166 ~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n-~l~~~------~~~~~L~~L~l~~n~-l~~~~~-----~~~~~ 227 (390)
T 3o6n_A 166 SLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIPIAVEELDASHNS-INVVRG-----PVNVE 227 (390)
T ss_dssp TCCEEECCSSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECCSSCSEEECCSSC-CCEEEC-----CCCSS
T ss_pred CCCEEECCCCc-CCccc----cccccccceeecccc-ccccc------CCCCcceEEECCCCe-eeeccc-----ccccc
Confidence 89999998754 44432 245799999999984 44321 235689999999864 322211 12379
Q ss_pred CcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccC
Q 006426 430 LKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAG 509 (645)
Q Consensus 430 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~ 509 (645)
|+.|+++++. +.+. ..+..+++|++|++++|. +....... ...+++|+.|+++++ .++... ......+ +
T Consensus 228 L~~L~l~~n~-l~~~----~~l~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~-~ 296 (390)
T 3o6n_A 228 LTILKLQHNN-LTDT----AWLLNYPGLVEVDLSYNE-LEKIMYHP-FVKMQRLERLYISNN-RLVALN--LYGQPIP-T 296 (390)
T ss_dssp CCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCEEESGG-GTTCSSCCEEECCSS-CCCEEE--CSSSCCT-T
T ss_pred ccEEECCCCC-Cccc----HHHcCCCCccEEECCCCc-CCCcChhH-ccccccCCEEECCCC-cCcccC--cccCCCC-C
Confidence 9999999965 3333 235678999999999986 44322222 234699999999984 554321 1112334 9
Q ss_pred ceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 510 LAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 510 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
|++|++++| .++.... .+.. +++|+.|++++| .++... ...+++|++|++++|++..+....+.
T Consensus 297 L~~L~L~~n-~l~~~~~-~~~~--l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 297 LKVLDLSHN-HLLHVER-NQPQ--FDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CCEEECCSS-CCCCCGG-GHHH--HTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCEEECCCC-cceecCc-cccc--cCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCCccchhHHHHH
Confidence 999999996 5553321 2333 789999999995 666543 34689999999999999988777665
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.1e-16 Score=166.78 Aligned_cols=302 Identities=19% Similarity=0.115 Sum_probs=151.5
Q ss_pred CCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCC
Q 006426 191 PSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPN 270 (645)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 270 (645)
++++.|+++++ .++.... ..+..+++|++|+|+++ .++..... ...++++|++|+|+++. ++..... ....+++
T Consensus 32 ~~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQ-DEFASFPHLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSNR-LKLIPLG-VFTGLSN 105 (477)
T ss_dssp TTCSEEECCSS-CCCEECT-TTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCSCCTT-SSTTCTT
T ss_pred CCCcEEECCCC-ccceECH-hHccCCCCCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCCc-CCccCcc-cccCCCC
Confidence 47788888775 3433211 12346777888888776 44432111 12346777777777643 2211111 1123566
Q ss_pred ccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCC
Q 006426 271 LKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQK 350 (645)
Q Consensus 271 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~ 350 (645)
|++|+++++. +...... ....+++
T Consensus 106 L~~L~Ls~n~---------------------------i~~~~~~-----------------------------~~~~l~~ 129 (477)
T 2id5_A 106 LTKLDISENK---------------------------IVILLDY-----------------------------MFQDLYN 129 (477)
T ss_dssp CCEEECTTSC---------------------------CCEECTT-----------------------------TTTTCTT
T ss_pred CCEEECCCCc---------------------------cccCChh-----------------------------Hcccccc
Confidence 6666666543 1110000 0123455
Q ss_pred ccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCC
Q 006426 351 LKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKL 430 (645)
Q Consensus 351 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 430 (645)
|+.|+++++. +....... ...+++|++|+++++ .++...... ...+++|+.|++.++. +..... ......++|
T Consensus 130 L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~-i~~~~~--~~~~~l~~L 202 (477)
T 2id5_A 130 LKSLEVGDND-LVYISHRA-FSGLNSLEQLTLEKC-NLTSIPTEA-LSHLHGLIVLRLRHLN-INAIRD--YSFKRLYRL 202 (477)
T ss_dssp CCEEEECCTT-CCEECTTS-STTCTTCCEEEEESC-CCSSCCHHH-HTTCTTCCEEEEESCC-CCEECT--TCSCSCTTC
T ss_pred CCEEECCCCc-cceeChhh-ccCCCCCCEEECCCC-cCcccChhH-hcccCCCcEEeCCCCc-CcEeCh--hhcccCccc
Confidence 6666665532 22211111 134566777777664 333221122 2346777777776643 211110 011122778
Q ss_pred cEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCc
Q 006426 431 KALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGL 510 (645)
Q Consensus 431 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L 510 (645)
+.|++++|..+...+... ....+|++|++++|. ++..... ....+++|+.|+++++ .++...... +..++ +|
T Consensus 203 ~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~-~L 274 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNC---LYGLNLTSLSITHCN-LTAVPYL-AVRHLVYLRFLNLSYN-PISTIEGSM-LHELL-RL 274 (477)
T ss_dssp CEEEEECCTTCCEECTTT---TTTCCCSEEEEESSC-CCSCCHH-HHTTCTTCCEEECCSS-CCCEECTTS-CTTCT-TC
T ss_pred ceeeCCCCccccccCccc---ccCccccEEECcCCc-ccccCHH-HhcCccccCeeECCCC-cCCccChhh-ccccc-cC
Confidence 888887776655544331 224578888888775 3322222 2345688888888873 444322211 22333 77
Q ss_pred eEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 511 AKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 511 ~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
+.|+|+++ .++......+.. +++|+.|+++++ +++..... .+..+++|++|++++|++.
T Consensus 275 ~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 275 QEIQLVGG-QLAVVEPYAFRG--LNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CEEECCSS-CCSEECTTTBTT--CTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSCEE
T ss_pred CEEECCCC-ccceECHHHhcC--cccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCCcc
Confidence 77777774 444433222333 677777777773 55442221 2234677777777777643
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=2.7e-16 Score=168.17 Aligned_cols=316 Identities=16% Similarity=0.140 Sum_probs=193.6
Q ss_pred CCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCC
Q 006426 190 CPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCP 269 (645)
Q Consensus 190 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 269 (645)
+++++.+++.++. +..- ...+...+++|++|+++++ .++...... ...+++|++|+|+++. ++......+ ..++
T Consensus 50 l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 123 (597)
T ss_dssp GCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred CCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCCc-CCCCCHHHH-cCCC
Confidence 4578888887642 2221 1223446788888888886 444322112 2347778888877754 322111112 2366
Q ss_pred CccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCC
Q 006426 270 NLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQ 349 (645)
Q Consensus 270 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~ 349 (645)
+|+.|+++++. ++.. +. .....++
T Consensus 124 ~L~~L~L~~n~---------------------------l~~l-----------------------~~------~~~~~l~ 147 (597)
T 3oja_B 124 LLTVLVLERND---------------------------LSSL-----------------------PR------GIFHNTP 147 (597)
T ss_dssp TCCEEECCSSC---------------------------CCCC-----------------------CT------TTTTTCT
T ss_pred CCCEEEeeCCC---------------------------CCCC-----------------------CH------HHhccCC
Confidence 67777766653 1110 00 0013458
Q ss_pred CccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcC
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEK 429 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 429 (645)
+|+.|+++++. +...... ....+++|+.|+++++ .++... ...+++|+.|++.++. +.... ..++
T Consensus 148 ~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~-l~~l~-------~~~~ 212 (597)
T 3oja_B 148 KLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LSTLA-------IPIA 212 (597)
T ss_dssp TCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC-CSEEE-------CCTT
T ss_pred CCCEEEeeCCc-CCCCChh-hhhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc-ccccc-------CCch
Confidence 89999998764 4332221 2356899999999985 444322 2458899999998753 33221 1278
Q ss_pred CcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccC
Q 006426 430 LKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAG 509 (645)
Q Consensus 430 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~ 509 (645)
|+.|+++++. +...+. ...++|+.|++++|. +++. .....+++|+.|++++ ..++...... +..++ +
T Consensus 213 L~~L~ls~n~-l~~~~~-----~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~-~ 279 (597)
T 3oja_B 213 VEELDASHNS-INVVRG-----PVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSY-NELEKIMYHP-FVKMQ-R 279 (597)
T ss_dssp CSEEECCSSC-CCEEEC-----SCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCS-SCCCEEESGG-GTTCS-S
T ss_pred hheeeccCCc-cccccc-----ccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCC-CccCCCCHHH-hcCcc-C
Confidence 9999999854 333322 124789999999986 4332 2234579999999998 4555433222 23344 8
Q ss_pred ceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCc
Q 006426 510 LAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNL 589 (645)
Q Consensus 510 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 589 (645)
|+.|+|++| .++.... ... .+++|+.|+|++| .++... .....+++|+.|++++|.++... + ..+++|
T Consensus 280 L~~L~Ls~N-~l~~l~~--~~~-~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~---~--~~~~~L 347 (597)
T 3oja_B 280 LERLYISNN-RLVALNL--YGQ-PIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNSIVTLK---L--STHHTL 347 (597)
T ss_dssp CCEEECTTS-CCCEEEC--SSS-CCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSCCCCCC---C--CTTCCC
T ss_pred CCEEECCCC-CCCCCCc--ccc-cCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCCCCCcC---h--hhcCCC
Confidence 999999995 5554221 112 3789999999985 665322 11245799999999999877653 2 378899
Q ss_pred cEEecCCCCCCCHHHHHHH
Q 006426 590 QILSLSGCSMVSDKSLGAL 608 (645)
Q Consensus 590 ~~L~l~~c~~l~~~~~~~~ 608 (645)
+.|++++|+ ++......+
T Consensus 348 ~~L~l~~N~-~~~~~~~~~ 365 (597)
T 3oja_B 348 KNLTLSHND-WDCNSLRAL 365 (597)
T ss_dssp SEEECCSSC-EEHHHHHHH
T ss_pred CEEEeeCCC-CCChhHHHH
Confidence 999999955 665555443
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=9.5e-17 Score=174.25 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=84.3
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
+.+++|+|+++... .+.... +..+++|++|+|+++ .++.-. ...+..+++|++|+|++| .++.... ....+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~----f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~-~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYS----FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLAL-GAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTT----TTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECG-GGGTT
T ss_pred cCCCEEEeeCCCCC-CCCHHH----HhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCH-HHhcC
Confidence 47899999988532 233322 246789999999986 343211 112347889999999997 4554222 22356
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCccc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVS 312 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 312 (645)
+++|++|+++++. ++...-..+ ..+++|++|+++++.. ....+....... .+|+.|+++++.++...
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~-~~L~~L~~L~Ls~N~l-~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLI-QSFKLPEYFSNL-TNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSSCC-CCCCCCGGGGGC-TTCCEEECCSSCCCEEC
T ss_pred CCCCCEEECCCCc-CCCCChhhh-hcCcccCeeccccCcc-ccCCCchhhccc-hhhhhhcccCccccccc
Confidence 8999999998864 322111112 3488999999988752 211111111222 24899999988776543
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=3.1e-15 Score=159.97 Aligned_cols=317 Identities=16% Similarity=0.122 Sum_probs=207.2
Q ss_pred CCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHh
Q 006426 161 RGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240 (645)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 240 (645)
..+++.+.+.++.. ..++.. +...+++|++|+++++ .+...... .+..+++|++|+|++| .++.... ....
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~----~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAA----LLDSFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPP-HVFQ 120 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTH----HHHHCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTT
T ss_pred CCCceEEEeeCCCC-CCcCHH----HHccCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCC-cCCCCCH-HHHc
Confidence 36889999988742 223333 3456889999999986 34432211 2347899999999997 4554222 2235
Q ss_pred hCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcC
Q 006426 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 320 (645)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 320 (645)
++++|++|+++++. ++... ..+...+++|+.|+++++.. .. +
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~Ls~N~l-~~----------------~------------------- 162 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNNL-ER----------------I------------------- 162 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCC-CB----------------C-------------------
T ss_pred CCCCCCEEEeeCCC-CCCCC-HHHhccCCCCCEEEeeCCcC-CC----------------C-------------------
Confidence 68999999999875 33211 11223477888888877641 10 0
Q ss_pred cccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhc
Q 006426 321 MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAA 400 (645)
Q Consensus 321 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 400 (645)
.. .....+++|+.|+++++. +.... ...+++|+.|+++++ .++.. ...
T Consensus 163 --------------~~------~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n-~l~~l------~~~ 210 (597)
T 3oja_B 163 --------------ED------DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLSTL------AIP 210 (597)
T ss_dssp --------------CT------TTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSS-CCSEE------ECC
T ss_pred --------------Ch------hhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccC-ccccc------cCC
Confidence 00 011346899999999864 44432 245799999999985 44321 235
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
++|+.|+++++. +.... ....++|+.|+++++. +.+. ..+..+++|++|++++|. +.......+ ..+
T Consensus 211 ~~L~~L~ls~n~-l~~~~-----~~~~~~L~~L~L~~n~-l~~~----~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l 277 (597)
T 3oja_B 211 IAVEELDASHNS-INVVR-----GPVNVELTILKLQHNN-LTDT----AWLLNYPGLVEVDLSYNE-LEKIMYHPF-VKM 277 (597)
T ss_dssp TTCSEEECCSSC-CCEEE-----CSCCSCCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCEEESGGG-TTC
T ss_pred chhheeeccCCc-ccccc-----cccCCCCCEEECCCCC-CCCC----hhhccCCCCCEEECCCCc-cCCCCHHHh-cCc
Confidence 789999999864 22211 1122789999999965 3332 235678999999999986 443222222 356
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|+.|+++++ .++.- .......+ +|+.|+|++| .++..+ ..+.. +++|+.|++++| .++... ...+
T Consensus 278 ~~L~~L~Ls~N-~l~~l--~~~~~~l~-~L~~L~Ls~N-~l~~i~-~~~~~--l~~L~~L~L~~N-~l~~~~----~~~~ 344 (597)
T 3oja_B 278 QRLERLYISNN-RLVAL--NLYGQPIP-TLKVLDLSHN-HLLHVE-RNQPQ--FDRLENLYLDHN-SIVTLK----LSTH 344 (597)
T ss_dssp SSCCEEECTTS-CCCEE--ECSSSCCT-TCCEEECCSS-CCCCCG-GGHHH--HTTCSEEECCSS-CCCCCC----CCTT
T ss_pred cCCCEEECCCC-CCCCC--CcccccCC-CCcEEECCCC-CCCccC-ccccc--CCCCCEEECCCC-CCCCcC----hhhc
Confidence 99999999984 55432 11122234 9999999996 455332 22333 789999999995 665432 3468
Q ss_pred CcCCeeeecCCCCChHHHHHHH
Q 006426 561 PLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
++|+.|++++|++.......+.
T Consensus 345 ~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCCSEEECCSSCEEHHHHHHHT
T ss_pred CCCCEEEeeCCCCCChhHHHHH
Confidence 9999999999999887766655
No 48
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.7e-13 Score=136.80 Aligned_cols=263 Identities=14% Similarity=0.112 Sum_probs=177.1
Q ss_pred HHHHhhcCCccceEEeCCCCCCCHHHH---HHHHHhcC-CCCeeecccccccchhh---HHHHhhhcCcCCcEEeccccC
Q 006426 367 LEAVGKGCPNLKQFCLRKCAFLSDNGL---ISFAKAAF-SLESLQLEECHRITQLG---FFGSLLNCGEKLKALSLVSCL 439 (645)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~~~~~~~~~l---~~~~~~~~-~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~ 439 (645)
+..+....++|++|+++++ .+++.+. ......++ +|++|+++++ .+++.+ +...+....++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4455556667999999995 4555433 34445677 8999999987 455443 333333334899999999975
Q ss_pred CCCccccc--cccccCC-CCCcEEeccCCCCCCHHHHHHHHh---c-CCCCcEEEecCCCCCCccchHHHHhh---cccC
Q 006426 440 GIKDQNLG--VRSVSPC-KSLRSLSIRNCPGFGDASLAVLGK---L-CPQLQNVDLSGLQGVTDAGFLPVLES---CEAG 509 (645)
Q Consensus 440 ~l~~~~~~--~~~~~~~-~~L~~L~l~~~~~~~~~~l~~l~~---~-~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~~ 509 (645)
+++.... ...+..+ ++|++|++++|. +++.....+.. . +++|++|++++ ..+++.+...+... .+++
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTT
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHHhcCCcc
Confidence 3332221 1113344 899999999987 55444444333 2 46999999999 57877777666443 3348
Q ss_pred ceEEEccCCCCCChHHHHHHHHh--hC-CCccEEecCCCCCCCHHHHHHH----HhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 510 LAKVNLSGCVNLTDKVVSTMAEL--HG-WTLEMLNLDGCRKISDASLMAI----ADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 510 L~~L~l~~c~~l~~~~~~~l~~~--~~-~~L~~L~l~~c~~l~~~~l~~l----~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
|++|++++| .+++.+...+... .. ++|+.|++++| .+++.+...+ ....++|++|++++|.+++.+...+.
T Consensus 169 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 169 VNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp CCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 999999996 6665554433330 24 59999999995 7877443333 22346999999999999887665544
Q ss_pred h--cCCCCccEEecCCCC--CCCHHHHHHHHHh---cccccccccccccCCChHHHHHHHHh
Q 006426 583 H--GNYLNLQILSLSGCS--MVSDKSLGALRKL---GQTLLGLNLQHCNAISTNSVDMLVEQ 637 (645)
Q Consensus 583 ~--~~~~~L~~L~l~~c~--~l~~~~~~~~~~~---~~~L~~L~l~~C~~l~~~~~~~~~~~ 637 (645)
. ..+++|+.|++++|. .++...+..+... .++|+.|++++ +++.......+...
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPSHSIPISNL 307 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGGGCHHHHHH
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCcchHHHHHH
Confidence 2 478999999999864 4676666666553 45688999999 77877644444443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=3.6e-16 Score=162.92 Aligned_cols=300 Identities=20% Similarity=0.143 Sum_probs=142.4
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
++++.|+++++. ++......+ ... .+|+.|+|+++.++......+. .+++|+.|++.++. +.... ......+
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~-~~l-~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~---~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEF-ASF-PHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNR-LKLIP---LGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTT-TTC-TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCSCC---TTSSTTC
T ss_pred CCCcEEECCCCc-cceECHhHc-cCC-CCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCc-CCccC---cccccCC
Confidence 478888888765 332111111 111 2377777777776654443332 34667777766552 11110 0012345
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +..... .....+++|++|+++++ .+.......+ ..+++|+.|++.++. ++..... .+. ..+
T Consensus 104 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~-~l~-~l~ 176 (477)
T 2id5_A 104 SNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKCN-LTSIPTE-ALS-HLH 176 (477)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESCC-CSSCCHH-HHT-TCT
T ss_pred CCCCEEECCCCc-cccCCh-hHccccccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCCc-CcccChh-Hhc-ccC
Confidence 667777776643 222111 11244667777777663 3322111112 246667777776642 2222111 111 126
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|++.++. +.... ...+..+++|++|++++|..+...... .. ...+|++|+++++ .++..... .+..++
T Consensus 177 ~L~~L~l~~n~-i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~n-~l~~~~~~-~~~~l~- 248 (477)
T 2id5_A 177 GLIVLRLRHLN-INAIR--DYSFKRLYRLKVLEISHWPYLDTMTPN-CL-YGLNLTSLSITHC-NLTAVPYL-AVRHLV- 248 (477)
T ss_dssp TCCEEEEESCC-CCEEC--TTCSCSCTTCCEEEEECCTTCCEECTT-TT-TTCCCSEEEEESS-CCCSCCHH-HHTTCT-
T ss_pred CCcEEeCCCCc-CcEeC--hhhcccCcccceeeCCCCccccccCcc-cc-cCccccEEECcCC-cccccCHH-HhcCcc-
Confidence 67777766643 22211 112445666777777665433211100 01 1236666666663 34422211 223333
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|+++ .++......+.. +++|+.|+++++ +++......+ .++++|++|++++|.++......+. .+++
T Consensus 249 ~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 321 (477)
T 2id5_A 249 YLRFLNLSYN-PISTIEGSMLHE--LLRLQEIQLVGG-QLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFH--SVGN 321 (477)
T ss_dssp TCCEEECCSS-CCCEECTTSCTT--CTTCCEEECCSS-CCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBS--CGGG
T ss_pred ccCeeECCCC-cCCccChhhccc--cccCCEEECCCC-ccceECHHHh-cCcccCCEEECCCCcCceeCHhHcC--CCcc
Confidence 6666666664 344332222222 566666666663 4443221112 2456666666666665543333333 4566
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++++++
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 6666666644
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=2.1e-15 Score=154.81 Aligned_cols=344 Identities=15% Similarity=0.128 Sum_probs=158.9
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHHhh
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN 241 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 241 (645)
.+++.|+++++.... ++. ..++|++|+++++ .++. + ....++|++|+++++ .++. +...
T Consensus 71 ~~l~~L~l~~~~l~~-lp~--------~~~~L~~L~l~~n-~l~~--l---p~~~~~L~~L~l~~n-~l~~-----l~~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPE--------LPPHLESLVASCN-SLTE--L---PELPQSLKSLLVDNN-NLKA-----LSDL 129 (454)
T ss_dssp HTCSEEECTTSCCSC-CCS--------CCTTCSEEECCSS-CCSS--C---CCCCTTCCEEECCSS-CCSC-----CCSC
T ss_pred cCCCEEEecCCcccc-CCC--------CcCCCCEEEccCC-cCCc--c---ccccCCCcEEECCCC-ccCc-----ccCC
Confidence 467888888874221 221 2367888888775 3332 1 123478888888886 4443 1111
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGM 321 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 321 (645)
.++|++|+++++. ++. +..+ ..+++|++|+++++. ++. +. ....+|+.|+++++.++...
T Consensus 130 ~~~L~~L~L~~n~-l~~--lp~~-~~l~~L~~L~l~~N~-l~~--lp----~~~~~L~~L~L~~n~l~~l~--------- 189 (454)
T 1jl5_A 130 PPLLEYLGVSNNQ-LEK--LPEL-QNSSFLKIIDVDNNS-LKK--LP----DLPPSLEFIAAGNNQLEELP--------- 189 (454)
T ss_dssp CTTCCEEECCSSC-CSS--CCCC-TTCTTCCEEECCSSC-CSC--CC----CCCTTCCEEECCSSCCSSCC---------
T ss_pred CCCCCEEECcCCC-CCC--Cccc-CCCCCCCEEECCCCc-Ccc--cC----CCcccccEEECcCCcCCcCc---------
Confidence 2688888888764 332 2223 347788888888765 221 00 01123666666666554321
Q ss_pred ccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcC
Q 006426 322 AVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAF 401 (645)
Q Consensus 322 ~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 401 (645)
....+++|+.|+++++. +.. +....++|++|+++++ .+.. +..+ ..++
T Consensus 190 ----------------------~~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~~--lp~~-~~l~ 237 (454)
T 1jl5_A 190 ----------------------ELQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILEE--LPEL-QNLP 237 (454)
T ss_dssp ----------------------CCTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSS--CCCC-TTCT
T ss_pred ----------------------cccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCCc--cccc-CCCC
Confidence 12334566666666543 221 1112346666666664 2321 1122 2466
Q ss_pred CCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCC
Q 006426 402 SLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCP 481 (645)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 481 (645)
+|+.|+++++. +.... ...++|+.|+++++. +...+. ..++|++|++++|. ++. +....+
T Consensus 238 ~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N~-l~~l~~------~~~~L~~L~ls~N~-l~~-----l~~~~~ 297 (454)
T 1jl5_A 238 FLTTIYADNNL-LKTLP------DLPPSLEALNVRDNY-LTDLPE------LPQSLTFLDVSENI-FSG-----LSELPP 297 (454)
T ss_dssp TCCEEECCSSC-CSSCC------SCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSE-----ESCCCT
T ss_pred CCCEEECCCCc-CCccc------ccccccCEEECCCCc-ccccCc------ccCcCCEEECcCCc-cCc-----ccCcCC
Confidence 66666666542 22111 112567777776643 332221 13667777777664 222 011225
Q ss_pred CCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 006426 482 QLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCP 561 (645)
Q Consensus 482 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~ 561 (645)
+|+.|+++++ .++.-. ..+++|++|+++++ .++.. .. .+++|+.|++++| +++... . .++
T Consensus 298 ~L~~L~l~~N-~l~~i~------~~~~~L~~L~Ls~N-~l~~l-----p~-~~~~L~~L~L~~N-~l~~lp--~---~l~ 357 (454)
T 1jl5_A 298 NLYYLNASSN-EIRSLC------DLPPSLEELNVSNN-KLIEL-----PA-LPPRLERLIASFN-HLAEVP--E---LPQ 357 (454)
T ss_dssp TCCEEECCSS-CCSEEC------CCCTTCCEEECCSS-CCSCC-----CC-CCTTCCEEECCSS-CCSCCC--C---CCT
T ss_pred cCCEEECcCC-cCCccc------CCcCcCCEEECCCC-ccccc-----cc-cCCcCCEEECCCC-cccccc--c---hhh
Confidence 7777777763 333210 11226777777774 44431 11 2467777777774 554311 1 357
Q ss_pred cCCeeeecCCCCCh--HHHHHHHh-----------cCCCCccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 562 LLCDLDVSKCAVTD--FGIASLAH-----------GNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 562 ~L~~L~l~~~~i~~--~~~~~l~~-----------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
+|++|++++|+++. .....+.. ..+++|+.|+++++ .++. ++ ...++++.|.+.+|.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~--~~---~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLRE--FP---DIPESVEDLRMNSER 427 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCc--cc---cchhhHhheeCcCcc
Confidence 77777777776554 11111110 12267888888874 3432 11 233557777777754
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=1.7e-14 Score=147.95 Aligned_cols=375 Identities=18% Similarity=0.117 Sum_probs=200.4
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCC---CCh-----HHH--HHHH-hhCCCCCEEecCCCCCC
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSS---VGD-----EGL--CEIA-NGCHQLEKLDLCQCPAI 230 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~---~~~-----~~l--~~~~-~~~~~L~~L~L~~~~~~ 230 (645)
..+++|.++++.. ..+ ..-...+++|++|+++++.. +.. ..+ ..+. ....++++|++++| .+
T Consensus 11 ~~L~~L~l~~n~l-~~i-----P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CC
T ss_pred ccchhhhcccCch-hhC-----ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-cc
Confidence 4677777777632 222 22234567777777765320 000 000 0000 01246788999887 44
Q ss_pred CHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCc
Q 006426 231 TDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITD 310 (645)
Q Consensus 231 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 310 (645)
+. + ....++|++|+++++. ++. +....++|+.|+++++.. +.. ...+.+|+.|+++++.++.
T Consensus 84 ~~--l---p~~~~~L~~L~l~~n~-l~~-----lp~~~~~L~~L~l~~n~l-~~l------~~~~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 84 SS--L---PELPPHLESLVASCNS-LTE-----LPELPQSLKSLLVDNNNL-KAL------SDLPPLLEYLGVSNNQLEK 145 (454)
T ss_dssp SC--C---CSCCTTCSEEECCSSC-CSS-----CCCCCTTCCEEECCSSCC-SCC------CSCCTTCCEEECCSSCCSS
T ss_pred cc--C---CCCcCCCCEEEccCCc-CCc-----cccccCCCcEEECCCCcc-Ccc------cCCCCCCCEEECcCCCCCC
Confidence 43 1 1124789999998754 322 112357899999988753 221 0112358999998888776
Q ss_pred ccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCH
Q 006426 311 VSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSD 390 (645)
Q Consensus 311 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 390 (645)
.. . ...+++|+.|++.++. +..- ....++|+.|+++++. +... .. ...+++|+.|+++++ .++.
T Consensus 146 lp--~-~~~l~~L~~L~l~~N~-l~~l-------p~~~~~L~~L~L~~n~-l~~l--~~-~~~l~~L~~L~l~~N-~l~~ 209 (454)
T 1jl5_A 146 LP--E-LQNSSFLKIIDVDNNS-LKKL-------PDLPPSLEFIAAGNNQ-LEEL--PE-LQNLPFLTAIYADNN-SLKK 209 (454)
T ss_dssp CC--C-CTTCTTCCEEECCSSC-CSCC-------CCCCTTCCEEECCSSC-CSSC--CC-CTTCTTCCEEECCSS-CCSS
T ss_pred Cc--c-cCCCCCCCEEECCCCc-Cccc-------CCCcccccEEECcCCc-CCcC--cc-ccCCCCCCEEECCCC-cCCc
Confidence 43 2 3456788888888763 2210 0123589999998864 3332 12 356889999999885 3432
Q ss_pred HHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCH
Q 006426 391 NGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGD 470 (645)
Q Consensus 391 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 470 (645)
+. ...++|+.|+++++. +.... . + ...++|++|+++++. +...+. ..++|++|++++|. +..
T Consensus 210 --l~---~~~~~L~~L~l~~n~-l~~lp--~-~-~~l~~L~~L~l~~N~-l~~l~~------~~~~L~~L~l~~N~-l~~ 271 (454)
T 1jl5_A 210 --LP---DLPLSLESIVAGNNI-LEELP--E-L-QNLPFLTTIYADNNL-LKTLPD------LPPSLEALNVRDNY-LTD 271 (454)
T ss_dssp --CC---CCCTTCCEEECCSSC-CSSCC--C-C-TTCTTCCEEECCSSC-CSSCCS------CCTTCCEEECCSSC-CSC
T ss_pred --CC---CCcCcccEEECcCCc-CCccc--c-c-CCCCCCCEEECCCCc-CCcccc------cccccCEEECCCCc-ccc
Confidence 11 123589999998863 33222 1 2 233889999998853 333321 24789999999886 332
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCH
Q 006426 471 ASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISD 550 (645)
Q Consensus 471 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~ 550 (645)
+....++|+.|+++++ .++.-. ..+++|+.|++++| .++.. .. ..++|+.|+++++ +++.
T Consensus 272 -----l~~~~~~L~~L~ls~N-~l~~l~------~~~~~L~~L~l~~N-~l~~i-----~~-~~~~L~~L~Ls~N-~l~~ 331 (454)
T 1jl5_A 272 -----LPELPQSLTFLDVSEN-IFSGLS------ELPPNLYYLNASSN-EIRSL-----CD-LPPSLEELNVSNN-KLIE 331 (454)
T ss_dssp -----CCCCCTTCCEEECCSS-CCSEES------CCCTTCCEEECCSS-CCSEE-----CC-CCTTCCEEECCSS-CCSC
T ss_pred -----cCcccCcCCEEECcCC-ccCccc------CcCCcCCEEECcCC-cCCcc-----cC-CcCcCCEEECCCC-cccc
Confidence 1223478999999984 454311 11238999999985 55532 12 1258999999984 6654
Q ss_pred HHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCH--H---HH---------HHHHHhccccc
Q 006426 551 ASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSD--K---SL---------GALRKLGQTLL 616 (645)
Q Consensus 551 ~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~--~---~~---------~~~~~~~~~L~ 616 (645)
+...+++|++|++++|.++.. . ..+++|+.|++++|. ++. . .+ ..+....++|+
T Consensus 332 -----lp~~~~~L~~L~L~~N~l~~l-----p-~~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 332 -----LPALPPRLERLIASFNHLAEV-----P-ELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp -----CCCCCTTCCEEECCSSCCSCC-----C-CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC-------------
T ss_pred -----ccccCCcCCEEECCCCccccc-----c-chhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCC
Confidence 223468999999999987642 2 146899999999854 543 1 00 11111236799
Q ss_pred ccccccccCCCh
Q 006426 617 GLNLQHCNAIST 628 (645)
Q Consensus 617 ~L~l~~C~~l~~ 628 (645)
.|++++ ++++.
T Consensus 400 ~L~ls~-N~l~~ 410 (454)
T 1jl5_A 400 QLHVET-NPLRE 410 (454)
T ss_dssp ------------
T ss_pred EEECCC-CcCCc
Confidence 999999 55653
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=1.4e-15 Score=165.05 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCCCCCCHHHHHHHH
Q 006426 160 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIA 239 (645)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 239 (645)
..++|+.|+|++|... .+.+.. ...+++|++|+|+++ .+..-. ...+..+++|++|++++| .++...- ...
T Consensus 74 ~l~~L~~L~Ls~N~i~-~i~~~~----f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~~-~~~ 144 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQ-TIEDGA----YQSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVET-NLASLEN-FPI 144 (635)
T ss_dssp TCTTCCEEECTTCCCC-EECTTT----TTTCTTCCEEECTTC-CCCEEC-GGGGTTCTTCCEEECTTS-CCCCSTT-CCC
T ss_pred CCCCCCEEECCCCcCC-CcChhH----hcCCCCCCEEEccCC-cCCCCC-HHHhcCCCCCCEEECCCC-cCCCCCh-hhh
Confidence 3578899999887432 233222 345788999999875 343211 123457889999999887 4443111 113
Q ss_pred hhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCC
Q 006426 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCR 280 (645)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 280 (645)
.++++|++|+++++. +...........+++|++|+++++.
T Consensus 145 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 145 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 457889999998764 3221122233447889999988765
No 53
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.45 E-value=6e-14 Score=120.18 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHHhc--CCCCccEEecCCCCCCCHHHHHHHHHhc
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLAHG--NYLNLQILSLSGCSMVSDKSLGALRKLG 612 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 612 (645)
.|+.|++++|. +++.++..+. +|++|++|+|++|. |+|.++..+... .+++|+.|+|++|.+||+.++..+.. +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 34555555542 5555444442 45555555555552 555555555510 12355666666665566665555542 4
Q ss_pred ccccccccccccCCChHH--HHHHHHhcccCc
Q 006426 613 QTLLGLNLQHCNAISTNS--VDMLVEQLWRCD 642 (645)
Q Consensus 613 ~~L~~L~l~~C~~l~~~~--~~~~~~~l~~~~ 642 (645)
++|+.|++++|++||+.+ +..+++.+|.|+
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 556666666666666543 455555666554
No 54
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=2.5e-12 Score=127.67 Aligned_cols=195 Identities=20% Similarity=0.216 Sum_probs=135.1
Q ss_pred cCCcEEeccccCCCCcccccc--ccc-cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHh
Q 006426 428 EKLKALSLVSCLGIKDQNLGV--RSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLE 504 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 504 (645)
++|++|++++|. ++...... ..+ ...++|++|++++|. +++..+..+...+++|+.|++++ +.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHH
Confidence 789999999865 33322111 111 234689999999886 78888877777778899999998 4788777766654
Q ss_pred hc---ccCceEEEccCCCCCChHHHHHHHH--hhCCCccEEecCCCCCCCHHHHHHHH---hcCCcCCeeeecCCCCChH
Q 006426 505 SC---EAGLAKVNLSGCVNLTDKVVSTMAE--LHGWTLEMLNLDGCRKISDASLMAIA---DNCPLLCDLDVSKCAVTDF 576 (645)
Q Consensus 505 ~~---~~~L~~L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~l~~l~---~~~~~L~~L~l~~~~i~~~ 576 (645)
.. .++|++|+|++| .+++.+...+.. ...++|++|+|++| .+++.+...+. ..+++|++|+|++|.|++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 32 238999999986 687777665542 14688999999884 78887765554 3567899999999999988
Q ss_pred HHHHHHh--cCCCCccEEecCCCCCCCHHHHHHHHHhcc-c---ccccc--cccccCCChH
Q 006426 577 GIASLAH--GNYLNLQILSLSGCSMVSDKSLGALRKLGQ-T---LLGLN--LQHCNAISTN 629 (645)
Q Consensus 577 ~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~---L~~L~--l~~C~~l~~~ 629 (645)
+...+.. ..+++|+.|+|++ +.|++.+...+..... . |+.+. +.. +.++..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~-~~~~~~ 285 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYF-NELSSEGRQVLRDLGGAAEGGARVVVSLTEG-TAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTT-SSCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccC-CCCCHHHHHHHHHHhcCCCccchhhHhhhcC-CccCHH
Confidence 8776653 2578899999988 4588888887766421 1 55665 444 445544
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=7.6e-15 Score=144.82 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=93.4
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|+.|+++++. +...+.....+..+++|++|++++|. ++... ....++|++|+++++ .++...... +..++
T Consensus 145 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~ 216 (330)
T 1xku_A 145 NQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGN-KITKVDAAS-LKGLN 216 (330)
T ss_dssp TTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTS-CCCEECTGG-GTTCT
T ss_pred ccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCC----ccccccCCEEECCCC-cCCccCHHH-hcCCC
Confidence 555555555532 22211222234456666666666654 22100 011256777777763 444332222 22333
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHh----
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAH---- 583 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~---- 583 (645)
+|++|+++++ .++......+.. +++|++|++++| .++. +......+++|++|++++|+++..+...+..
T Consensus 217 -~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 217 -NLAKLGLSFN-SISAVDNGSLAN--TPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp -TCCEEECCSS-CCCEECTTTGGG--STTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred -CCCEEECCCC-cCceeChhhccC--CCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 7777777774 444433223333 778888888884 5653 2112345788888888888876654444431
Q ss_pred cCCCCccEEecCCCCCCCHHHHH-HHHHhccccccccccc
Q 006426 584 GNYLNLQILSLSGCSMVSDKSLG-ALRKLGQTLLGLNLQH 622 (645)
Q Consensus 584 ~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~L~~L~l~~ 622 (645)
...+.|+.|++.+++ +....+. .....+++++.+++++
T Consensus 290 ~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 290 TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC--
T ss_pred cccccccceEeecCc-ccccccCccccccccceeEEEecc
Confidence 134678888888855 4322111 1222346677888776
No 56
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=3.6e-13 Score=115.34 Aligned_cols=102 Identities=23% Similarity=0.327 Sum_probs=69.4
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc---CCcCCeeeecCCC-CChHHHHHHHhc
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADN---CPLLCDLDVSKCA-VTDFGIASLAHG 584 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~---~~~L~~L~l~~~~-i~~~~~~~l~~~ 584 (645)
+|++|++++|. +++.++..+.. +++|++|+|++|.+++|.++..+... +++|++|+|++|. |+|.++..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~--~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-- 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-- 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTT--CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG--
T ss_pred eEeEEeCcCCC-ccHHHHHHhcC--CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh--
Confidence 56666666664 66666665543 67777777777777777777777642 4577777777774 7777777776
Q ss_pred CCCCccEEecCCCCCCCHHH--HHHHHHhcccc
Q 006426 585 NYLNLQILSLSGCSMVSDKS--LGALRKLGQTL 615 (645)
Q Consensus 585 ~~~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L 615 (645)
.+++|+.|++++|+.||+.+ ...+....|++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 67788888888888777765 33444444543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1.9e-13 Score=133.64 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcc
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQ 613 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 613 (645)
+++|+.|++++| +++..... ...+++|++|++++|.++... ..+. .+++|+.|++++|+ ++...++.....++
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~-~~~~--~l~~L~~L~l~~N~-~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KALR--FSQNLEHFDLRGNG-FHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCCEEC-TTCC--CCTTCCEEECTTCC-CBHHHHHHHHHTCH
T ss_pred cccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCcccchh-hHhh--cCCCCCEEEccCCC-ccCcCHHHHHhccc
Confidence 345555555552 34322111 223455555555555544211 1111 44555555555522 33223333333344
Q ss_pred cccccccc
Q 006426 614 TLLGLNLQ 621 (645)
Q Consensus 614 ~L~~L~l~ 621 (645)
+|+.|++.
T Consensus 263 ~L~~l~l~ 270 (317)
T 3o53_A 263 RVQTVAKQ 270 (317)
T ss_dssp HHHHHHHH
T ss_pred cceEEECC
Confidence 44544444
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=9.9e-15 Score=144.05 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=97.5
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|+.|+++++. +...+.....+..+ +|++|++++|. ++... ....++|++|+++++ .++...... +..++
T Consensus 147 ~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~n-~i~~~~~~~-l~~l~ 217 (332)
T 2ft3_A 147 RNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-LTGIP----KDLPETLNELHLDHN-KIQAIELED-LLRYS 217 (332)
T ss_dssp SSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC----SSSCSSCSCCBCCSS-CCCCCCTTS-STTCT
T ss_pred ccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-CCccC----ccccCCCCEEECCCC-cCCccCHHH-hcCCC
Confidence 666666666643 22222222223334 67777777664 22100 011257777777763 443222111 12233
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhc---
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHG--- 584 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~--- 584 (645)
+|++|+++++ .++......+.. +++|+.|++++| +++.. ......+++|++|++++|+++..+...+...
T Consensus 218 -~L~~L~L~~N-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 218 -KLYRLGLGHN-QIRMIENGSLSF--LPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp -TCSCCBCCSS-CCCCCCTTGGGG--CTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred -CCCEEECCCC-cCCcCChhHhhC--CCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 7888888874 444433223333 788999999884 66532 2223468899999999998876655544411
Q ss_pred -CCCCccEEecCCCCCCCHHH-HHHHHHhccccccccccccc
Q 006426 585 -NYLNLQILSLSGCSMVSDKS-LGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 585 -~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~C~ 624 (645)
..++|+.|++.+++ ++... .+.....+++|+.|++++|.
T Consensus 291 ~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 25678899998865 33111 12222345778888888754
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.2e-13 Score=132.94 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=76.3
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|++|+++++..+...... .+..+++|++|++++|. +....... ...+++|++|+++++ .++... ..+...++
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~ 222 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEIDASD-LQSYEPKS-LKSIQNVSHLILHMK-QHILLL-EIFVDVTS 222 (353)
T ss_dssp TTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECS-CSTTHH-HHHHHHTT
T ss_pred CCCcEEECCCCccccccCHH--HccCCCCCCEEECCCCC-cCccCHHH-HhccccCCeecCCCC-ccccch-hhhhhhcc
Confidence 55555555554333332211 13345555666655553 22111111 122355555555553 222111 11122222
Q ss_pred cCceEEEccCCCCCChHHHHHH--HHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTM--AELHGWTLEMLNLDGCRKISDASLMAI---ADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l--~~~~~~~L~~L~l~~c~~l~~~~l~~l---~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+|+.|+++++ .++......+ .. ....++.+++.++ .+++..+..+ ..++++|++|++++|+++......+.
T Consensus 223 -~L~~L~L~~n-~l~~~~~~~l~~~~-~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~ 298 (353)
T 2z80_A 223 -SVECLELRDT-DLDTFHFSELSTGE-TNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298 (353)
T ss_dssp -TEEEEEEESC-BCTTCCCC-------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -cccEEECCCC-cccccccccccccc-ccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHh
Confidence 5666666553 2322111111 11 2556777777773 6666544433 34577888888888876643222223
Q ss_pred hcCCCCccEEecCCCCC
Q 006426 583 HGNYLNLQILSLSGCSM 599 (645)
Q Consensus 583 ~~~~~~L~~L~l~~c~~ 599 (645)
.+++|+.|++++|+.
T Consensus 299 --~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 299 --RLTSLQKIWLHTNPW 313 (353)
T ss_dssp --TCTTCCEEECCSSCB
T ss_pred --cCCCCCEEEeeCCCc
Confidence 677888888887553
No 60
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=4.6e-11 Score=118.57 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=134.4
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhc----CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccc
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAA----FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVR 449 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 449 (645)
.++|+.|+++++ .+++.+...+...+ ++|+.|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~-------------------------- 122 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLL-------------------------- 122 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTH--------------------------
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHH--------------------------
Confidence 366778888774 57776666665531 46667777665 34444443322
Q ss_pred cccCCCCCcEEeccCCCCCCHHHHHHHHh----cCCCCcEEEecCCCCCCccchHHHH---hhcccCceEEEccCCCCCC
Q 006426 450 SVSPCKSLRSLSIRNCPGFGDASLAVLGK----LCPQLQNVDLSGLQGVTDAGFLPVL---ESCEAGLAKVNLSGCVNLT 522 (645)
Q Consensus 450 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~~L~~L~l~~c~~l~ 522 (645)
..+++|++|++++|. +++.....+.. .+++|++|++++| .+++.+...+. ..++ +|++|+|++| .++
T Consensus 123 --~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N-~l~ 196 (372)
T 3un9_A 123 --PVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT-SVTHLSLLHT-GLG 196 (372)
T ss_dssp --HHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCS-SCCEEECTTS-SCH
T ss_pred --HHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCC-CcCEEeCCCC-CCC
Confidence 124678899999886 88877776653 3589999999995 78877766664 3344 8999999995 688
Q ss_pred hHHHHHHHHh--hCCCccEEecCCCCCCCHHHHHHHHh---cCCcCCeeeecCCCCChHHHHHHHhcCCCC---ccEEe-
Q 006426 523 DKVVSTMAEL--HGWTLEMLNLDGCRKISDASLMAIAD---NCPLLCDLDVSKCAVTDFGIASLAHGNYLN---LQILS- 593 (645)
Q Consensus 523 ~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~---L~~L~- 593 (645)
+.+...+... ..++|+.|+|++| .+++.+...+.. .+++|++|+|++|.|++.+...+....... |+.+.
T Consensus 197 ~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ 275 (372)
T 3un9_A 197 DEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275 (372)
T ss_dssp HHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECC
T ss_pred cHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHh
Confidence 8887665531 3579999999995 899987766653 569999999999999999999887432223 77777
Q ss_pred -cCCCCCCCHH
Q 006426 594 -LSGCSMVSDK 603 (645)
Q Consensus 594 -l~~c~~l~~~ 603 (645)
+.+ +.+++.
T Consensus 276 ll~~-~~~~~~ 285 (372)
T 3un9_A 276 LTEG-TAVSEY 285 (372)
T ss_dssp CC-----CHHH
T ss_pred hhcC-CccCHH
Confidence 555 445444
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.31 E-value=1.6e-13 Score=134.59 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=112.7
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++++.|+++++. +.... ..+ ..+++|++|+++++ .++ .+......+++|+.|+++++. +.. +...+.. .+
T Consensus 81 ~~l~~L~L~~n~-l~~lp-~~l-~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~--lp~~l~~-l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFP-DQA-FRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNP-LRA--LPASIAS-LN 150 (328)
T ss_dssp TTCCEEEEESSC-CSSCC-SCG-GGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCC-CCC--CCGGGGG-CT
T ss_pred cceeEEEccCCC-chhcC-hhh-hhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCc-ccc--CcHHHhc-Cc
Confidence 566666666543 32111 112 23667777777764 333 122222346777777777653 221 1111222 27
Q ss_pred CCcEEeccccCCCCccccccc------cccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHH
Q 006426 429 KLKALSLVSCLGIKDQNLGVR------SVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPV 502 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 502 (645)
+|++|++++|......+.... .+..+++|++|++++|. ++. +......+++|++|+++++ .++. +...
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~ 224 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRS--LPASIANLQNLKSLKIRNS-PLSA--LGPA 224 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCc--chHhhcCCCCCCEEEccCC-CCCc--Cchh
Confidence 777777777766555443321 12346777777777764 321 1111234577777777763 3331 1112
Q ss_pred HhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 503 LESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 503 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+..++ +|++|++++|....... ..+. .+++|+.|++++|+...... ....++++|++|+|++|++.......+.
T Consensus 225 l~~l~-~L~~L~Ls~n~~~~~~p-~~~~--~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 225 IHHLP-KLEELDLRGCTALRNYP-PIFG--GRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp GGGCT-TCCEEECTTCTTCCBCC-CCTT--CCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred hccCC-CCCEEECcCCcchhhhH-HHhc--CCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 23333 67777777654333211 1122 25666666666654333211 1123566666666666654443333444
Q ss_pred hcCCCCccEEecCC
Q 006426 583 HGNYLNLQILSLSG 596 (645)
Q Consensus 583 ~~~~~~L~~L~l~~ 596 (645)
.+++|+.+.+..
T Consensus 299 --~L~~L~~l~l~~ 310 (328)
T 4fcg_A 299 --QLPANCIILVPP 310 (328)
T ss_dssp --GSCTTCEEECCG
T ss_pred --hccCceEEeCCH
Confidence 566666666654
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=2.2e-13 Score=133.23 Aligned_cols=235 Identities=19% Similarity=0.138 Sum_probs=149.4
Q ss_pred HHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccc
Q 006426 366 GLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQN 445 (645)
Q Consensus 366 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 445 (645)
....+...+++|++|+++++ .++......+ ..+++|+.|+++++....... + ...++|++|+++++. +..
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~----~-~~l~~L~~L~Ls~n~-l~~-- 94 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNVLYETLD----L-ESLSTLRTLDLNNNY-VQE-- 94 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTS-CCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE----E-TTCTTCCEEECCSSE-EEE--
T ss_pred hHHHHhccCCCCCEEECcCC-ccCcCCHHHh-hCCCcCCEEECCCCcCCcchh----h-hhcCCCCEEECcCCc-ccc--
Confidence 34455566778888888874 4443322333 457888888888764322221 1 223888888888753 222
Q ss_pred cccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHH
Q 006426 446 LGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKV 525 (645)
Q Consensus 446 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 525 (645)
+...++|++|++++|. ++... ...+++|++|+++++ .++...-.. +...+ +|++|++++| .++...
T Consensus 95 -----l~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~~-~~~l~-~L~~L~Ls~N-~l~~~~ 160 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANN-KITMLRDLD-EGCRS-RVQYLDLKLN-EIDTVN 160 (317)
T ss_dssp -----EEECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSS-CCCSGGGBC-TGGGS-SEEEEECTTS-CCCEEE
T ss_pred -----ccCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCC-CCCCccchh-hhccC-CCCEEECCCC-CCCccc
Confidence 2235889999998875 33221 123688999999884 444321111 12233 8999999985 666544
Q ss_pred HHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHH
Q 006426 526 VSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSL 605 (645)
Q Consensus 526 ~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 605 (645)
...+.. .+++|+.|++++| .++... .. ..+++|++|++++|.++..... +. .+++|+.|++++| .++. +
T Consensus 161 ~~~~~~-~l~~L~~L~L~~N-~l~~~~--~~-~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N-~l~~--l 229 (317)
T 3o53_A 161 FAELAA-SSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN-KLVL--I 229 (317)
T ss_dssp GGGGGG-GTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS-CCCE--E
T ss_pred HHHHhh-ccCcCCEEECCCC-cCcccc--cc-cccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCC-cccc--h
Confidence 444443 4789999999995 665431 11 1479999999999998764322 44 7899999999995 5663 3
Q ss_pred HHHHHhcccccccccccccCCChHHHHHHHH
Q 006426 606 GALRKLGQTLLGLNLQHCNAISTNSVDMLVE 636 (645)
Q Consensus 606 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~ 636 (645)
+.....+++|+.|++++ +.++...+..+..
T Consensus 230 ~~~~~~l~~L~~L~l~~-N~~~~~~~~~~~~ 259 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRG-NGFHCGTLRDFFS 259 (317)
T ss_dssp CTTCCCCTTCCEEECTT-CCCBHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccC-CCccCcCHHHHHh
Confidence 33234457899999999 6677444444444
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=7.5e-15 Score=143.21 Aligned_cols=253 Identities=12% Similarity=-0.000 Sum_probs=153.5
Q ss_pred CCccEEeeCCCCCCCh--HHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhc
Q 006426 349 QKLKSLTITSCMGVTD--LGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNC 426 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (645)
.+++.|+++++. +.. ... .....+++|++|++++++.+.......+ ..+++|++|+++++....... ..+. .
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p--~~~~-~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP--DFLS-Q 123 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC--GGGG-G
T ss_pred ceEEEEECCCCC-ccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCC--HHHh-C
Confidence 468888888754 332 111 2234678899999885333332212223 458889999988764221111 1111 2
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
.++|++|+++++..-...+ ..+..+++|++|++++|. ++......+....++|+.|+++++ .++...... +...
T Consensus 124 l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l 197 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLP---PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANL 197 (313)
T ss_dssp CTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGC
T ss_pred CCCCCEEeCCCCccCCcCC---hHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCC
Confidence 3889999998864322222 235578999999999886 332222223332238999999884 443222222 2222
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCC
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNY 586 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 586 (645)
+|+.|++++| .++......+. .+++|+.|+++++ .++.... . ...+++|++|++++|.++......+. .+
T Consensus 198 --~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l 267 (313)
T 1ogq_A 198 --NLAFVDLSRN-MLEGDASVLFG--SDKNTQKIHLAKN-SLAFDLG-K-VGLSKNLNGLDLRNNRIYGTLPQGLT--QL 267 (313)
T ss_dssp --CCSEEECCSS-EEEECCGGGCC--TTSCCSEEECCSS-EECCBGG-G-CCCCTTCCEEECCSSCCEECCCGGGG--GC
T ss_pred --cccEEECcCC-cccCcCCHHHh--cCCCCCEEECCCC-ceeeecC-c-ccccCCCCEEECcCCcccCcCChHHh--cC
Confidence 5999999985 44433223233 3789999999985 5543211 1 34679999999999998755445555 78
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCC
Q 006426 587 LNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 587 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l 626 (645)
++|+.|++++| .++.. ++.. ...++|+.|++.+++.+
T Consensus 268 ~~L~~L~Ls~N-~l~~~-ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 268 KFLHSLNVSFN-NLCGE-IPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTCCEEECCSS-EEEEE-CCCS-TTGGGSCGGGTCSSSEE
T ss_pred cCCCEEECcCC-ccccc-CCCC-ccccccChHHhcCCCCc
Confidence 99999999985 45532 2222 34577999999986544
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.8e-13 Score=133.20 Aligned_cols=258 Identities=16% Similarity=0.094 Sum_probs=159.7
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|++|+++++. +....... ...+++|++|+++++ .++......+ ..+++|++|+++++. ++..... .+ ...+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~~-~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSD-LQRCVNLQALVLTSN-GINTIEEDSF-SSLGSLEHLDLSYNY-LSNLSSS-WF-KPLS 124 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CSSCCHH-HH-TTCT
T ss_pred ccCcEEECCCCc-CcccCHHH-hccCCCCCEEECCCC-ccCccCHhhc-CCCCCCCEEECCCCc-CCcCCHh-Hh-CCCc
Confidence 467777777643 43322111 245678888888774 4443211222 347788888887753 3322211 11 2237
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|++|+++++. +...+.. ..+..+++|++|++++|..++...... ...+++|++|+++++ .++...... +..++
T Consensus 125 ~L~~L~L~~n~-l~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~- 198 (353)
T 2z80_A 125 SLTFLNLLGNP-YKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDAS-DLQSYEPKS-LKSIQ- 198 (353)
T ss_dssp TCSEEECTTCC-CSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET-TCCEECTTT-TTTCS-
T ss_pred cCCEEECCCCC-CcccCch-hhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCC-CcCccCHHH-Hhccc-
Confidence 88888888753 3333220 135678999999999985443322222 234689999999984 454332222 23344
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHH--HHhcCCcCCeeeecCCCCChHHHHHHHh--c
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMA--IADNCPLLCDLDVSKCAVTDFGIASLAH--G 584 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~--l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~ 584 (645)
+|++|+++++ .++......+.. +++|+.|+++++ .++...... ....++.++.++++++.+.+..+..+.. .
T Consensus 199 ~L~~L~l~~n-~l~~~~~~~~~~--~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 199 NVSHLILHMK-QHILLLEIFVDV--TSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp EEEEEEEECS-CSTTHHHHHHHH--TTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred cCCeecCCCC-ccccchhhhhhh--cccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 8999999996 566555443433 899999999985 555422111 1235788999999999999987666542 3
Q ss_pred CCCCccEEecCCCCCCCHHHHHH-HHHhcccccccccccccCCC
Q 006426 585 NYLNLQILSLSGCSMVSDKSLGA-LRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 585 ~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~L~~L~l~~C~~l~ 627 (645)
.+++|+.|++++| .++. ++. +...+++|++|++++++ ++
T Consensus 275 ~l~~L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~-~~ 314 (353)
T 2z80_A 275 QISGLLELEFSRN-QLKS--VPDGIFDRLTSLQKIWLHTNP-WD 314 (353)
T ss_dssp TCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSC-BC
T ss_pred cccCCCEEECCCC-CCCc--cCHHHHhcCCCCCEEEeeCCC-cc
Confidence 8899999999985 5663 222 22456889999999954 43
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=8.8e-12 Score=131.85 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=30.2
Q ss_pred CCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCc
Q 006426 243 PKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITD 310 (645)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 310 (645)
.++++|+++++. ++. +.. ...++|+.|+++++. ++... . ...+|+.|+++++.++.
T Consensus 40 ~~l~~L~ls~n~-L~~--lp~--~l~~~L~~L~L~~N~-l~~lp-----~-~l~~L~~L~Ls~N~l~~ 95 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT--LPD--CLPAHITTLVIPDNN-LTSLP-----A-LPPELRTLEVSGNQLTS 95 (622)
T ss_dssp HCCCEEECCSSC-CSC--CCS--CCCTTCSEEEECSCC-CSCCC-----C-CCTTCCEEEECSCCCSC
T ss_pred CCCcEEEecCCC-cCc--cCh--hhCCCCcEEEecCCC-CCCCC-----C-cCCCCCEEEcCCCcCCc
Confidence 468888888754 221 100 112578888888765 22110 1 12347777777666553
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=3.5e-12 Score=134.90 Aligned_cols=267 Identities=18% Similarity=0.141 Sum_probs=168.9
Q ss_pred CCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCC
Q 006426 269 PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGL 348 (645)
Q Consensus 269 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 348 (645)
.+++.|+++++. ++. +....+.+|+.|+++++.++.... .+++|+.|+++++. ++.- . ..+
T Consensus 40 ~~l~~L~ls~n~-L~~-----lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~l-----p--~~l 100 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT-----LPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQ-LTSL-----P--VLP 100 (622)
T ss_dssp HCCCEEECCSSC-CSC-----CCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCC-CSCC-----C--CCC
T ss_pred CCCcEEEecCCC-cCc-----cChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCc-CCcC-----C--CCC
Confidence 368999998765 221 112223459999999988875433 46788888888774 2211 1 146
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|+.|+++++. +... ...+++|+.|+++++ .++. +...+++|+.|+++++. ++... ...+
T Consensus 101 ~~L~~L~Ls~N~-l~~l-----~~~l~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~-l~~l~------~~~~ 161 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHL-----PALPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDNQ-LASLP------ALPS 161 (622)
T ss_dssp TTCCEEEECSCC-CCCC-----CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSCCC------CCCT
T ss_pred CCCCEEECcCCc-CCCC-----CCCCCCcCEEECCCC-CCCc-----CCCCCCCCCEEECcCCc-CCCcC------CccC
Confidence 788888888753 3321 114678888888874 3432 11235788888888763 33211 1227
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|++.++ .+..++ ..+++|+.|++++|. ++. +....++|+.|+++++ .++.-. ... +
T Consensus 162 ~L~~L~L~~N-~l~~l~------~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N-~l~~l~-----~~~-~ 221 (622)
T 3g06_A 162 ELCKLWAYNN-QLTSLP------MLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTSLP-----ALP-S 221 (622)
T ss_dssp TCCEEECCSS-CCSCCC------CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSSCC-----CCC-T
T ss_pred CCCEEECCCC-CCCCCc------ccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcCC-cccccC-----CCC-C
Confidence 8888888874 344433 246888999998875 332 1123478889988874 443211 112 3
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|++++| .++... . .+++|+.|++++| +++... ..+++|++|++++|.++.. ...+. .+++
T Consensus 222 ~L~~L~Ls~N-~L~~lp-----~-~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N~L~~l-p~~l~--~l~~ 285 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP-----V-LPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRNQLTRL-PESLI--HLSS 285 (622)
T ss_dssp TCCEEECCSS-CCSCCC-----C-CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCCSC-CGGGG--GSCT
T ss_pred CCCEEEccCC-ccCcCC-----C-CCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCCCCCcC-CHHHh--hccc
Confidence 8899999885 555432 2 4688999999884 665321 2578899999999887733 22344 7888
Q ss_pred ccEEecCCCCCCCHHHHHHHHH
Q 006426 589 LQILSLSGCSMVSDKSLGALRK 610 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~ 610 (645)
|+.|++++| .++......+..
T Consensus 286 L~~L~L~~N-~l~~~~~~~l~~ 306 (622)
T 3g06_A 286 ETTVNLEGN-PLSERTLQALRE 306 (622)
T ss_dssp TCEEECCSC-CCCHHHHHHHHH
T ss_pred cCEEEecCC-CCCCcCHHHHHh
Confidence 999999884 477665555443
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=6.7e-14 Score=136.41 Aligned_cols=230 Identities=18% Similarity=0.132 Sum_probs=132.0
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHH--HHHHHHhcCCCCeeecccccccchhhHHHHhhhc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNG--LISFAKAAFSLESLQLEECHRITQLGFFGSLLNC 426 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (645)
++|++|+++++. +..... .....+++|++|+++++ .++..+ ...+ ..+++|+.|+++++. +.... ..+. .
T Consensus 28 ~~l~~L~L~~n~-l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~l~--~~~~-~ 99 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNG-VITMS--SNFL-G 99 (306)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCS-EEEEE--EEEE-T
T ss_pred CCCCEEECCCCc-cCccCH-hHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCc-cccCh--hhcC-C
Confidence 467777777643 332211 22345677888888774 443211 1112 247788888887753 22111 1111 2
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
.++|++|+++++. +..... ...+..+++|++|++++|. +..... .....+++|++|+++++ .+++..+...+..+
T Consensus 100 l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDIFTEL 174 (306)
T ss_dssp CTTCCEEECTTSE-EESSTT-TTTTTTCTTCCEEECTTSC-CEECST-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred CCCCCEEECCCCc-cccccc-chhhhhccCCCEEECCCCc-CCccch-hhcccCcCCCEEECCCC-ccccccchhHHhhC
Confidence 3788888887743 222211 0124567888888888875 221111 11234588888888874 33322222223334
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCC
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNY 586 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 586 (645)
+ +|++|++++| .++......+.. +++|+.|+++++ .++...... ...+++|++|++++|.++......+. .+
T Consensus 175 ~-~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~~ 246 (306)
T 2z66_A 175 R-NLTFLDLSQC-QLEQLSPTAFNS--LSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ--HF 246 (306)
T ss_dssp T-TCCEEECTTS-CCCEECTTTTTT--CTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCC--CC
T ss_pred c-CCCEEECCCC-CcCCcCHHHhcC--CCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCHHHHH--hh
Confidence 4 8888888885 555443333333 788999999884 555432222 24678999999999987765544444 55
Q ss_pred -CCccEEecCCCCC
Q 006426 587 -LNLQILSLSGCSM 599 (645)
Q Consensus 587 -~~L~~L~l~~c~~ 599 (645)
++|+.|++++++.
T Consensus 247 ~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 247 PSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTCCEEECTTCCE
T ss_pred hccCCEEEccCCCe
Confidence 4899999988553
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=1.6e-12 Score=128.00 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=83.3
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|++|+++++. +...+.. ..++|++|++++|. ++...... ...+++|+.|+++++ .++...... +..++
T Consensus 171 ~~L~~L~l~~n~-l~~l~~~-----~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~ 240 (330)
T 1xku_A 171 KKLSYIRIADTN-ITTIPQG-----LPPSLTELHLDGNK-ITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNGS-LANTP 240 (330)
T ss_dssp TTCCEEECCSSC-CCSCCSS-----CCTTCSEEECTTSC-CCEECTGG-GTTCTTCCEEECCSS-CCCEECTTT-GGGST
T ss_pred CCcCEEECCCCc-cccCCcc-----ccccCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCC-cCceeChhh-ccCCC
Confidence 666666666643 2222211 12677777777764 33221111 224577777777773 444322211 22333
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH-----hcCCcCCeeeecCCCCChHHH--HH
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIA-----DNCPLLCDLDVSKCAVTDFGI--AS 580 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~-----~~~~~L~~L~l~~~~i~~~~~--~~ 580 (645)
+|++|++++| .++... ..+. .+++|++|++++| .++..+...+. ...+.|+.|++++|++....+ ..
T Consensus 241 -~L~~L~L~~N-~l~~lp-~~l~--~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 241 -HLRELHLNNN-KLVKVP-GGLA--DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp -TCCEEECCSS-CCSSCC-TTTT--TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred -CCCEEECCCC-cCccCC-hhhc--cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 7888888875 444221 1222 3788899999884 66543322221 124788899999998765332 23
Q ss_pred HHhcCCCCccEEecCCC
Q 006426 581 LAHGNYLNLQILSLSGC 597 (645)
Q Consensus 581 l~~~~~~~L~~L~l~~c 597 (645)
+. .+++|+.++++++
T Consensus 315 f~--~~~~l~~l~L~~N 329 (330)
T 1xku_A 315 FR--CVYVRAAVQLGNY 329 (330)
T ss_dssp GT--TCCCGGGEEC---
T ss_pred cc--cccceeEEEeccc
Confidence 33 6788999999874
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=4.9e-14 Score=137.43 Aligned_cols=233 Identities=17% Similarity=0.122 Sum_probs=149.1
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhH-HHHhhhcCcCCcEEeccccCCCCcccccccccc
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGF-FGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVS 452 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 452 (645)
.++|++|+++++ .++... ..+...+++|+.|++.++. +...+. ...+. ..++|++|+++++. +...+. .+.
T Consensus 27 ~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~L~~L~Ls~n~-i~~l~~---~~~ 98 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF-GTTSLKYLDLSFNG-VITMSS---NFL 98 (306)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH-SCSCCCEEECCSCS-EEEEEE---EEE
T ss_pred CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCc-cCcccCcccccc-cccccCEEECCCCc-cccChh---hcC
Confidence 368999999985 444311 1223468999999999863 332211 11111 23999999999864 333222 255
Q ss_pred CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH-HHHHHHH
Q 006426 453 PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK-VVSTMAE 531 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~ 531 (645)
.+++|++|++++|. +...........+++|++|+++++ .++... ...+...+ +|++|+++++ .+++. ....+.
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~- 172 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLS-SLEVLKMAGN-SFQENFLPDIFT- 172 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS-CCEECS-TTTTTTCT-TCCEEECTTC-EEGGGEECSCCT-
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC-cCCccc-hhhcccCc-CCCEEECCCC-ccccccchhHHh-
Confidence 78999999999875 222111112345699999999985 443221 12233344 9999999996 44431 111222
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHh
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 611 (645)
.+++|+.|++++| .++......+ ..+++|++|++++|.++......+. .+++|+.|++++| .++......+...
T Consensus 173 -~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~~ 246 (306)
T 2z66_A 173 -ELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLN-HIMTSKKQELQHF 246 (306)
T ss_dssp -TCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTS-CCCBCSSSSCCCC
T ss_pred -hCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCC-CCcccCHHHHHhh
Confidence 4789999999995 6665322223 4689999999999998765444454 7899999999995 4654333333333
Q ss_pred cccccccccccccCCC
Q 006426 612 GQTLLGLNLQHCNAIS 627 (645)
Q Consensus 612 ~~~L~~L~l~~C~~l~ 627 (645)
.++|+.|++++ +.++
T Consensus 247 ~~~L~~L~L~~-N~~~ 261 (306)
T 2z66_A 247 PSSLAFLNLTQ-NDFA 261 (306)
T ss_dssp CTTCCEEECTT-CCEE
T ss_pred hccCCEEEccC-CCee
Confidence 35899999999 4453
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.24 E-value=4.1e-13 Score=137.93 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=39.7
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|++| .++......+.. +++|+.|+++++ +++......+ .++++|++|+|++|+++......+. .+++
T Consensus 208 ~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 280 (440)
T 3zyj_A 208 KLDELDLSGN-HLSAIRPGSFQG--LMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFT--PLHH 280 (440)
T ss_dssp SCCEEECTTS-CCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTS--SCTT
T ss_pred ccCEEECCCC-ccCccChhhhcc--CccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhc--cccC
Confidence 5555555553 333322222222 556666666552 4443222111 2456666666666655543333333 4566
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++++++
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 6666666543
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=4.8e-13 Score=138.00 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=40.6
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|+++ .++......+.. +++|+.|+++++ +++...... ..++++|++|+|++|+++......+. .+++
T Consensus 219 ~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 291 (452)
T 3zyi_A 219 GLEELEMSGN-HFPEIRPGSFHG--LSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFT--PLRY 291 (452)
T ss_dssp TCCEEECTTS-CCSEECGGGGTT--CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSST--TCTT
T ss_pred cccEEECcCC-cCcccCcccccC--ccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCcCCccChHHhc--cccC
Confidence 5566666553 333322222222 556666666653 443322211 23456666666666665543322232 4566
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++++++
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 6666666543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=6.6e-13 Score=137.62 Aligned_cols=238 Identities=15% Similarity=0.096 Sum_probs=134.4
Q ss_pred CCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcC
Q 006426 348 LQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCG 427 (645)
Q Consensus 348 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 427 (645)
+++|+.|+++++. +...... ....+++|+.|+++++ .++... . ...+++|+.|+++++. ++... ..
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~-------~~ 98 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAA-DLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNY-VQELL-------VG 98 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGG-GGTTCTTCCEEECTTS-CCEEEE--E-CTTCTTCCEEECCSSE-EEEEE-------EC
T ss_pred CCCccEEEeeCCc-CCCCCHH-HHhCCCCCCEEEeeCC-CCCCCc--c-cccCCCCCEEEecCCc-CCCCC-------CC
Confidence 3466777776643 3332111 1245677777777764 332111 1 2346777777777652 32211 11
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|+.|++++|. +..... ..+++|++|++++|. ++......+ ..+++|+.|++++ +.++......+...++
T Consensus 99 ~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 99 PSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSD 169 (487)
T ss_dssp TTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTT-SCCCEEEGGGGGGGTT
T ss_pred CCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCC-CCCCCcChHHHhhhCC
Confidence 677777777753 332221 235778888888775 332211111 2357888888877 4666554444444444
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCC
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYL 587 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 587 (645)
+|+.|+|++| .++... ... .+++|+.|+|++| .++..... ...+++|+.|++++|.++... ..+. .++
T Consensus 170 -~L~~L~Ls~N-~l~~~~--~~~--~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp-~~l~--~l~ 237 (487)
T 3oja_A 170 -TLEHLNLQYN-FIYDVK--GQV--VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLVLIE-KALR--FSQ 237 (487)
T ss_dssp -TCCEEECTTS-CCCEEE--CCC--CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCCEEC-TTCC--CCT
T ss_pred -cccEEecCCC-cccccc--ccc--cCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCcccc-hhhc--cCC
Confidence 7888888875 444331 111 2678888888874 66543221 345788888888888876421 1122 667
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhcccccccccc
Q 006426 588 NLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQ 621 (645)
Q Consensus 588 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 621 (645)
+|+.|++++|+ ++...++.....++.|+.+.+.
T Consensus 238 ~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 88888888744 5544455545555566666654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=6.8e-13 Score=129.41 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=30.3
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHH-HH-HhcCCCCcEEEecC
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLA-VL-GKLCPQLQNVDLSG 490 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~-~l-~~~~~~L~~L~l~~ 490 (645)
++|++|+++++. +..... ..+..+++|++|++++|...+...+. .+ ...+++|++|++++
T Consensus 149 ~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNFSC--EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp TTCCEEEEESCS-CCCCCT--TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred CCCcEEEeeCCC-CccchH--HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 556666665543 222211 12446777888888877632222221 11 13456666666666
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.20 E-value=2.9e-12 Score=123.36 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
++|++|+++++. +....... ...+++|++|+++++ .++......+ ..+++|+.|+++++..+....... + ...+
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~-~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAAS-FRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-F-HGLG 105 (285)
T ss_dssp TTCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-T-TTCT
T ss_pred CCceEEEeeCCc-CCccCHHH-cccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-h-cCCc
Confidence 577788877643 43322211 245677777777763 3332111112 235666666666543222211100 1 1115
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCC
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNC 465 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 465 (645)
+|++|+++++. +.... ...+..+++|++|++++|
T Consensus 106 ~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQELG--PGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCEEC--HhHhhCCcCCCEEECCCC
Confidence 55666655543 11111 111334555555555554
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=1.2e-12 Score=129.00 Aligned_cols=109 Identities=18% Similarity=0.036 Sum_probs=50.7
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhh--
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES-- 505 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~-- 505 (645)
++|+.|+++++. +..... ..+..+++|++|++++|. ++. +......+++|+.|++++ +.++..+...+...
T Consensus 217 ~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 217 SKLYRLGLGHNQ-IRMIEN--GSLSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGF 289 (332)
T ss_dssp TTCSCCBCCSSC-CCCCCT--TGGGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSC
T ss_pred CCCCEEECCCCc-CCcCCh--hHhhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCC-CCCCccChhHcccccc
Confidence 556666665532 222211 113456667777776664 221 111123457777777776 34443333222211
Q ss_pred --cccCceEEEccCCCCCC-hHHHHHHHHhhCCCccEEecCCC
Q 006426 506 --CEAGLAKVNLSGCVNLT-DKVVSTMAELHGWTLEMLNLDGC 545 (645)
Q Consensus 506 --~~~~L~~L~l~~c~~l~-~~~~~~l~~~~~~~L~~L~l~~c 545 (645)
..++|+.|++++++... ......+ . .+++|+.|+++++
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~-~-~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATF-R-CVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGG-T-TBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCcccc-c-ccchhhhhhcccc
Confidence 01267788888754221 1111112 2 4678888888774
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.19 E-value=3.1e-11 Score=117.15 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=125.0
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccC
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSP 453 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 453 (645)
+++|++|++.++ .+.. +..+ ..+++|+.|+++++. +..... +. ..++|++|+++++. +...+ .+..
T Consensus 40 l~~L~~L~l~~~-~i~~--l~~~-~~l~~L~~L~L~~n~-i~~~~~---~~-~l~~L~~L~L~~n~-l~~~~----~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT--IEGV-QYLNNLIGLELKDNQ-ITDLAP---LK-NLTKITELELSGNP-LKNVS----AIAG 105 (308)
T ss_dssp HHTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECCSSC-CCCCGG---GT-TCCSCCEEECCSCC-CSCCG----GGTT
T ss_pred cCCcCEEEeeCC-CccC--chhh-hccCCCCEEEccCCc-CCCChh---Hc-cCCCCCEEEccCCc-CCCch----hhcC
Confidence 578999999986 3433 2223 458899999998864 333222 22 23889999998865 44432 3567
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
+++|++|++++|. ++... . ...+++|++|+++++ .++.... +..++ +|+.|++++| .+++... +. .
T Consensus 106 l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~-~L~~L~l~~n-~l~~~~~--l~--~ 171 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLT-NLQYLSIGNA-QVSDLTP--LA--N 171 (308)
T ss_dssp CTTCCEEECTTSC-CCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCT-TCCEEECCSS-CCCCCGG--GT--T
T ss_pred CCCCCEEECCCCC-CCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCC-CccEEEccCC-cCCCChh--hc--C
Confidence 8899999999886 33321 1 345688999999884 4443221 33444 8888888886 4554322 33 4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+++|+.|++++| .+++... ...+++|++|++++|++++.. .+. .+++|+.|++++|+
T Consensus 172 l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~l~--~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 172 LSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQISDVS--PLA--NTSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSCCCBCG--GGT--TCTTCCEEEEEEEE
T ss_pred CCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCccCccc--ccc--CCCCCCEEEccCCe
Confidence 788888888884 6654322 346888888888888877654 244 78888888888743
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.18 E-value=9.6e-13 Score=135.20 Aligned_cols=179 Identities=18% Similarity=0.165 Sum_probs=109.3
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
++|++|+++++ .+...+. ..+..+++|++|++++|. +...... ....+++|+.|+++++..++..... .+..++
T Consensus 112 ~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~ 185 (440)
T 3zyj_A 112 ANLNTLELFDN-RLTTIPN--GAFVYLSKLKELWLRNNP-IESIPSY-AFNRIPSLRRLDLGELKRLSYISEG-AFEGLS 185 (440)
T ss_dssp SSCCEEECCSS-CCSSCCT--TTSCSCSSCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTT-TTTTCS
T ss_pred ccCCEEECCCC-cCCeeCH--hHhhccccCceeeCCCCc-ccccCHH-HhhhCcccCEeCCCCCCCcceeCcc-hhhccc
Confidence 55555555553 2222221 124456777777777664 2211111 1234577777777775554432211 122333
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCC
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYL 587 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 587 (645)
+|++|++++| .++... .+. .+++|+.|+|++| .++......+ .++++|++|++++|.++......+. .++
T Consensus 186 -~L~~L~L~~n-~l~~~~--~~~--~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--~l~ 255 (440)
T 3zyj_A 186 -NLRYLNLAMC-NLREIP--NLT--PLIKLDELDLSGN-HLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAFD--NLQ 255 (440)
T ss_dssp -SCCEEECTTS-CCSSCC--CCT--TCSSCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTCCCCEECTTSST--TCT
T ss_pred -ccCeecCCCC-cCcccc--ccC--CCcccCEEECCCC-ccCccChhhh-ccCccCCEEECCCCceeEEChhhhc--CCC
Confidence 8888888885 444322 222 4789999999995 7765432233 4689999999999998876655555 789
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 588 NLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 588 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
+|+.|+|++| .++...... ...+++|+.|++++++
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 9999999994 566332222 2345789999999843
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.17 E-value=1.5e-12 Score=134.19 Aligned_cols=159 Identities=22% Similarity=0.183 Sum_probs=100.0
Q ss_pred ccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHH
Q 006426 451 VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMA 530 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 530 (645)
+..+++|++|++++|. +..... .....+++|+.|+++++..++..... .+..++ +|++|++++| .++... .+.
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~-~L~~L~L~~n-~l~~~~--~~~ 215 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPS-YAFNRVPSLMRLDLGELKKLEYISEG-AFEGLF-NLKYLNLGMC-NIKDMP--NLT 215 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT-TTTTCT-TCCEEECTTS-CCSSCC--CCT
T ss_pred hcccCCCCEEECCCCC-cceeCH-hHHhcCCcccEEeCCCCCCccccChh-hccCCC-CCCEEECCCC-cccccc--ccc
Confidence 3456677777776664 221111 11234577777777765554432211 122233 7888888885 444321 222
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHH
Q 006426 531 ELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRK 610 (645)
Q Consensus 531 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 610 (645)
.+++|+.|+++++ .++...... +.++++|++|++++|.++......+. .+++|+.|++++| .++..... ...
T Consensus 216 --~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~-~~~ 287 (452)
T 3zyi_A 216 --PLVGLEELEMSGN-HFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAHN-NLSSLPHD-LFT 287 (452)
T ss_dssp --TCTTCCEEECTTS-CCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCSCCCTT-SST
T ss_pred --ccccccEEECcCC-cCcccCccc-ccCccCCCEEEeCCCcCceECHHHhc--CCCCCCEEECCCC-cCCccChH-Hhc
Confidence 3789999999994 676543323 34689999999999998876555555 7899999999985 56532221 223
Q ss_pred hccccccccccccc
Q 006426 611 LGQTLLGLNLQHCN 624 (645)
Q Consensus 611 ~~~~L~~L~l~~C~ 624 (645)
.+++|+.|++++++
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 45789999999844
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=3.7e-12 Score=124.06 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=51.7
Q ss_pred CccEEeeCCCCCCChHHHHHHhh--cCCccceEEeCCCCCCCHHHHHHHH-HhcCCCCeeecccccccchhh-HHHHhhh
Q 006426 350 KLKSLTITSCMGVTDLGLEAVGK--GCPNLKQFCLRKCAFLSDNGLISFA-KAAFSLESLQLEECHRITQLG-FFGSLLN 425 (645)
Q Consensus 350 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 425 (645)
.++.+.+.++. +.+..+..+.. .+++|++|+++++ .+.......+. ..+++|+.|+++++....... .......
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 46666666543 44444333221 2355777777764 22221111111 335667777776653221111 0001111
Q ss_pred cCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCC
Q 006426 426 CGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCP 466 (645)
Q Consensus 426 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 466 (645)
..++|++|+++++.- .... ...+..+++|++|++++|.
T Consensus 143 ~~~~L~~L~Ls~n~l-~~~~--~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-PAFS--CEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp BCSCCCEEEEECCSS-CCCC--TTSCCCCTTCCEEECCSCT
T ss_pred hccCCCEEEeeCCCc-chhh--HHHhccCCCCCEEECCCCC
Confidence 236677777766432 2211 1123456666666666665
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=4.4e-11 Score=116.10 Aligned_cols=193 Identities=20% Similarity=0.188 Sum_probs=135.1
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhc
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNC 426 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (645)
.+++|++|+++++. +... .. ...+++|+.|+++++ .+++.. . ...+++|+.|+++++. +.... .+. .
T Consensus 39 ~l~~L~~L~l~~~~-i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~---~~~-~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTI--EG-VQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNP-LKNVS---AIA-G 105 (308)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCC-CSCCG---GGT-T
T ss_pred HcCCcCEEEeeCCC-ccCc--hh-hhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCc-CCCch---hhc-C
Confidence 36799999999864 4432 12 356899999999985 454422 2 4568999999999874 43332 122 2
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
.++|++|++++|. +.+.+ .+..+++|++|++++|. ++.... ...+++|+.|+++++ .+++... +..+
T Consensus 106 l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l 172 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVT----PLAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNA-QVSDLTP---LANL 172 (308)
T ss_dssp CTTCCEEECTTSC-CCCCG----GGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTC
T ss_pred CCCCCEEECCCCC-CCCch----hhcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCC-cCCCChh---hcCC
Confidence 3899999999965 44432 25678999999999986 332211 346799999999985 5554322 4445
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCCh
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~ 575 (645)
+ +|+.|++++| .+++... +. .+++|+.|++++| .+++.. . ...+++|++|++++|+++.
T Consensus 173 ~-~L~~L~l~~n-~l~~~~~--l~--~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 173 S-KLTTLKADDN-KISDISP--LA--SLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp T-TCCEEECCSS-CCCCCGG--GG--GCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred C-CCCEEECCCC-ccCcChh--hc--CCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 5 9999999996 5554332 33 4899999999995 676543 2 3578999999999998755
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=2e-12 Score=134.04 Aligned_cols=226 Identities=19% Similarity=0.128 Sum_probs=151.4
Q ss_pred HhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccc
Q 006426 370 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVR 449 (645)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 449 (645)
+...+++|+.|+++++ .++......+ ..+++|+.|+++++....... ....++|++|++++|. +...
T Consensus 29 l~~~~~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l----- 95 (487)
T 3oja_A 29 LRQSAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNY-VQEL----- 95 (487)
T ss_dssp TSTTGGGCCEEECCSS-CCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSE-EEEE-----
T ss_pred hcccCCCccEEEeeCC-cCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCc-CCCC-----
Confidence 3345569999999995 4544222233 468999999999875322222 2233999999999863 3322
Q ss_pred cccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHH
Q 006426 450 SVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM 529 (645)
Q Consensus 450 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 529 (645)
...++|++|++++|. ++... ...+++|+.|+++++ .++...-. .+..++ +|+.|+++++ .++......+
T Consensus 96 --~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~-~L~~L~Ls~N-~l~~~~~~~l 164 (487)
T 3oja_A 96 --LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANN-KITMLRDL-DEGCRS-RVQYLDLKLN-EIDTVNFAEL 164 (487)
T ss_dssp --EECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSS-CCCSGGGB-CGGGGS-SEEEEECTTS-CCCEEEGGGG
T ss_pred --CCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCC-CCCCCCch-hhcCCC-CCCEEECCCC-CCCCcChHHH
Confidence 234899999999986 33221 124689999999984 55532211 122344 9999999995 6665444445
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHH
Q 006426 530 AELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALR 609 (645)
Q Consensus 530 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 609 (645)
.. .+++|+.|++++| .++... .. ..+++|+.|++++|.++..... +. .+++|+.|++++| .++. ++...
T Consensus 165 ~~-~l~~L~~L~Ls~N-~l~~~~--~~-~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N-~l~~--lp~~l 233 (487)
T 3oja_A 165 AA-SSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN-KLVL--IEKAL 233 (487)
T ss_dssp GG-GTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS-CCCE--ECTTC
T ss_pred hh-hCCcccEEecCCC-cccccc--cc-ccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCC-cCcc--cchhh
Confidence 43 4799999999995 666431 11 2489999999999998764332 44 7899999999994 5653 33323
Q ss_pred HhcccccccccccccCCChHHH
Q 006426 610 KLGQTLLGLNLQHCNAISTNSV 631 (645)
Q Consensus 610 ~~~~~L~~L~l~~C~~l~~~~~ 631 (645)
..+++|+.|++++ +.++-..+
T Consensus 234 ~~l~~L~~L~l~~-N~l~c~~~ 254 (487)
T 3oja_A 234 RFSQNLEHFDLRG-NGFHCGTL 254 (487)
T ss_dssp CCCTTCCEEECTT-CCBCHHHH
T ss_pred ccCCCCCEEEcCC-CCCcCcch
Confidence 3457899999999 55663333
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=5.3e-11 Score=115.96 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=112.1
Q ss_pred hcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC-----CCCcEEeccCCCCCCHHHH
Q 006426 399 AAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC-----KSLRSLSIRNCPGFGDASL 473 (645)
Q Consensus 399 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~l 473 (645)
.+++|++|+++++. +.......++....++|++|+++++. +...+.. +..+ ++|++|++++|. +.....
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAW---LAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSH---HHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhHH---HHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 47788888888763 22211111111223778888888754 3332211 2222 788888888775 322111
Q ss_pred HHHHhcCCCCcEEEecCCCCCCccchHHHH--hhcccCceEEEccCCCCCChH--HHHHHHHhhCCCccEEecCCCCCCC
Q 006426 474 AVLGKLCPQLQNVDLSGLQGVTDAGFLPVL--ESCEAGLAKVNLSGCVNLTDK--VVSTMAELHGWTLEMLNLDGCRKIS 549 (645)
Q Consensus 474 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~c~~l~~~--~~~~l~~~~~~~L~~L~l~~c~~l~ 549 (645)
..+ ..+++|++|+++++.-.+..++..-. ...+ +|++|++++| .++.. ....+.. .+++|+.|+++++ .++
T Consensus 167 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~~~~-~l~~L~~L~Ls~N-~l~ 241 (312)
T 1wwl_A 167 EQV-RVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNA-GMETPSGVCSALAA-ARVQLQGLDLSHN-SLR 241 (312)
T ss_dssp TTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTS-CCCCHHHHHHHHHH-TTCCCSEEECTTS-CCC
T ss_pred HHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCC-cCcchHHHHHHHHh-cCCCCCEEECCCC-cCC
Confidence 111 24578888888774322211221111 3333 7888888875 45521 1222333 3678888888773 555
Q ss_pred HHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCCh
Q 006426 550 DASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIST 628 (645)
Q Consensus 550 ~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~~ 628 (645)
..........+++|++|++++|.++.. ...-.++|+.|++++ +.++.. +. ....++|++|++++ +.++.
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~Ls~-N~l~~~--p~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLKQV-----PKGLPAKLSVLDLSY-NRLDRN--PS-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCSSC-----CSSCCSEEEEEECCS-SCCCSC--CC-TTTSCEEEEEECTT-CTTTC
T ss_pred cccchhhhhhcCCCCEEECCCCccChh-----hhhccCCceEEECCC-CCCCCC--hh-HhhCCCCCEEeccC-CCCCC
Confidence 432111122457788888888876621 111126788888877 456543 22 23456788888887 65654
No 83
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.13 E-value=3.5e-11 Score=81.25 Aligned_cols=40 Identities=43% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
...+..||+||+.+||+||+ .+|+.++++|||+|+.++.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999 99999999999999999865
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.12 E-value=2.5e-12 Score=126.03 Aligned_cols=224 Identities=20% Similarity=0.233 Sum_probs=141.9
Q ss_pred cCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcccccccccc
Q 006426 373 GCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVS 452 (645)
Q Consensus 373 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 452 (645)
..++++.|+++++ .++. +..-...+++|++|+++++. +... ...+. ..++|++|+++++. +..++ ..+.
T Consensus 79 ~~~~l~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~n~-l~~l--p~~~~-~l~~L~~L~Ls~n~-l~~lp---~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQ--FPDQAFRLSHLQHMTIDAAG-LMEL--PDTMQ-QFAGLETLTLARNP-LRALP---ASIA 147 (328)
T ss_dssp TSTTCCEEEEESS-CCSS--CCSCGGGGTTCSEEEEESSC-CCCC--CSCGG-GGTTCSEEEEESCC-CCCCC---GGGG
T ss_pred cccceeEEEccCC-Cchh--cChhhhhCCCCCEEECCCCC-ccch--hHHHh-ccCCCCEEECCCCc-cccCc---HHHh
Confidence 3578999999984 4442 22212348899999999864 3321 11122 23899999999864 33333 2366
Q ss_pred CCCCCcEEeccCCCCCCHHHHHHH--------HhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH
Q 006426 453 PCKSLRSLSIRNCPGFGDASLAVL--------GKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK 524 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~l~~l--------~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 524 (645)
.+++|++|++++|....... ..+ ...+++|++|+++++ .++ .+...+..++ +|++|++++| .++..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~-~L~~L~L~~N-~l~~l 221 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQ-NLKSLKIRNS-PLSAL 221 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCT-TCCEEEEESS-CCCCC
T ss_pred cCcCCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCC-CCCEEEccCC-CCCcC
Confidence 78999999999875332211 011 123689999999984 444 2222244455 8999999986 44432
Q ss_pred HHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHH
Q 006426 525 VVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKS 604 (645)
Q Consensus 525 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 604 (645)
. ..+. .+++|+.|++++|+.... +.....++++|++|++++|++.......+. .+++|+.|++++|+.++.
T Consensus 222 ~-~~l~--~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~-- 292 (328)
T 4fcg_A 222 G-PAIH--HLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLSR-- 292 (328)
T ss_dssp C-GGGG--GCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCTTCCC--
T ss_pred c-hhhc--cCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCCchhh--
Confidence 2 1233 488999999999754432 112234689999999999876554444455 788999999999876542
Q ss_pred HHHHHHhccccccccccc
Q 006426 605 LGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 605 ~~~~~~~~~~L~~L~l~~ 622 (645)
++......++|+.+.+..
T Consensus 293 iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCGGGGGSCTTCEEECCG
T ss_pred ccHHHhhccCceEEeCCH
Confidence 333333456677777665
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=9.8e-12 Score=119.59 Aligned_cols=208 Identities=16% Similarity=0.133 Sum_probs=134.3
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccC
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSP 453 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 453 (645)
.++|++|+++++ .++......+ ..+++|+.|++.++. +...... .+ ...++|++|+++++..+...... .+..
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~-~~-~~l~~L~~L~l~~n~~l~~~~~~--~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASF-RACRNLTILWLHSNV-LARIDAA-AF-TGLALLEQLDLSDNAQLRSVDPA--TFHG 103 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECTT-TT-TTCTTCCEEECCSCTTCCCCCTT--TTTT
T ss_pred CCCceEEEeeCC-cCCccCHHHc-ccCCCCCEEECCCCc-cceeCHh-hc-CCccCCCEEeCCCCCCccccCHH--HhcC
Confidence 478999999984 4544222223 458999999998863 3322111 11 12389999999987655554322 3557
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
+++|++|++++|. +..... .....+++|++|+++++ .++.... ..+..++ +|++|+++++ .++......+..
T Consensus 104 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~~-- 175 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDN-ALQALPD-DTFRDLG-NLTHLFLHGN-RISSVPERAFRG-- 175 (285)
T ss_dssp CTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT-TCCEEECCSS-CCCEECTTTTTT--
T ss_pred CcCCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCC-cccccCH-hHhccCC-CccEEECCCC-cccccCHHHhcC--
Confidence 8999999999885 332111 11235689999999884 4442221 1123344 8999999985 555443333333
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMV 600 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 600 (645)
+++|+.|+++++ .++......+ ..+++|++|++++|.+++.....+. .+++|+.|++++++..
T Consensus 176 l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 176 LHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCEE
T ss_pred ccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCcc
Confidence 788999999884 6655422222 3578999999999988776655566 7889999999886543
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.05 E-value=1e-12 Score=128.08 Aligned_cols=230 Identities=15% Similarity=0.007 Sum_probs=145.8
Q ss_pred CccceEEeCCCCCCCH--HHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCcccccccccc
Q 006426 375 PNLKQFCLRKCAFLSD--NGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVS 452 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 452 (645)
.+++.|+++++ .++. ..... +..+++|+.|+++++..+..... ..+. ..++|++|+++++......+. .+.
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~l~~~~p~---~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIP-PAIA-KLTQLHYLYITHTNVSGAIPD---FLS 122 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCC-GGGG-GCTTCSEEEEEEECCEEECCG---GGG
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccCC-hhHh-cCCCCCEEECcCCeeCCcCCH---HHh
Confidence 57999999985 4442 11122 34689999999996334432211 1122 239999999998653322222 356
Q ss_pred CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHh
Q 006426 453 PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAEL 532 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 532 (645)
.+++|++|++++|. +....... ...+++|++|+++++ .++......+. ..+++|+.|+++++ .++......+..
T Consensus 123 ~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~~~- 196 (313)
T 1ogq_A 123 QIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFAN- 196 (313)
T ss_dssp GCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGGG-
T ss_pred CCCCCCEEeCCCCc-cCCcCChH-HhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHHhC-
Confidence 78999999999985 22111111 235699999999984 55433222222 23238999999995 444332233433
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhc
Q 006426 533 HGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLG 612 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 612 (645)
++ |+.|+++++ .++.... .....+++|++|++++|.++..... +. .+++|+.|++++| .++.. ++.....+
T Consensus 197 -l~-L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N-~l~~~-~p~~l~~l 267 (313)
T 1ogq_A 197 -LN-LAFVDLSRN-MLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNN-RIYGT-LPQGLTQL 267 (313)
T ss_dssp -CC-CSEEECCSS-EEEECCG-GGCCTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSS-CCEEC-CCGGGGGC
T ss_pred -Cc-ccEEECcCC-cccCcCC-HHHhcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCC-cccCc-CChHHhcC
Confidence 44 999999995 5553322 2234689999999999987643222 33 7899999999985 46533 22223345
Q ss_pred ccccccccccccCCC
Q 006426 613 QTLLGLNLQHCNAIS 627 (645)
Q Consensus 613 ~~L~~L~l~~C~~l~ 627 (645)
++|+.|++++ ++++
T Consensus 268 ~~L~~L~Ls~-N~l~ 281 (313)
T 1ogq_A 268 KFLHSLNVSF-NNLC 281 (313)
T ss_dssp TTCCEEECCS-SEEE
T ss_pred cCCCEEECcC-Cccc
Confidence 7899999999 4454
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=5.4e-10 Score=109.78 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=85.4
Q ss_pred HHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCC--CCH--
Q 006426 475 VLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRK--ISD-- 550 (645)
Q Consensus 475 ~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~--l~~-- 550 (645)
.+...+|+|+.|.++++..+....+ . .+ +|++|+|..| .+++..+..+....+|+|+.|+|+.+.+ ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~~----~-~~-~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGKK----P-RP-NLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCSC----B-CT-TCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHhcCCCCcEEEEeCCCCceeccc----c-CC-CCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 3344456667766665422221111 1 22 6777777654 4666666655532367777777642110 011
Q ss_pred -HHHHHHH--hcCCcCCeeeecCCCCChHHHHHHHh-cCCCCccEEecCCCCCCCHHHHHHHHH---hcccccccccccc
Q 006426 551 -ASLMAIA--DNCPLLCDLDVSKCAVTDFGIASLAH-GNYLNLQILSLSGCSMVSDKSLGALRK---LGQTLLGLNLQHC 623 (645)
Q Consensus 551 -~~l~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~C 623 (645)
..+..+. ..+|+|++|++.+|.+++.+...+.. ..+++|+.|+|+. +.+++.+...+.. .+++|+.|++++|
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0111111 23677777777777777665555542 2466777777765 5577766555442 3466777777764
Q ss_pred cCCChHHHHHHHHhc
Q 006426 624 NAISTNSVDMLVEQL 638 (645)
Q Consensus 624 ~~l~~~~~~~~~~~l 638 (645)
.|++.+++.+.+.+
T Consensus 318 -~i~d~~~~~l~~al 331 (362)
T 2ra8_A 318 -YLSDEMKKELQKSL 331 (362)
T ss_dssp -BCCHHHHHHHHHHC
T ss_pred -cCCHHHHHHHHHHc
Confidence 47777777777644
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.05 E-value=3.2e-10 Score=110.34 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCCcEEeeccCCCCChHHHHHHHh--cCCCccEEEecCCCCcChHHHHHHHHhcccccceeeeccccCCc
Q 006426 242 CPKLIDLTIESCSSIGNEGLQAVGR--FCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITD 310 (645)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 310 (645)
...++.+.+..+. +++..+..+.. .+++|++|+++++... ......+......+|+.|+++++.++.
T Consensus 63 ~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 63 ALRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWAT 131 (310)
T ss_dssp SCCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSS
T ss_pred hcceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccc
Confidence 3457888887754 55554443332 2467888888877522 111111100112236666666666554
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=4.4e-11 Score=113.93 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=34.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+++|+.|++++| +++.... ....++++|++|++++|.++......+. .+++|+.|++++|+
T Consensus 156 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCCC
Confidence 566666766664 4443221 1123466777777777765543332233 56677777776644
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=3.6e-10 Score=101.75 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=63.6
Q ss_pred CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHh
Q 006426 453 PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAEL 532 (645)
Q Consensus 453 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 532 (645)
.+++|++|++++|. +.+.. . ...+++|++|++++ ..+++.....+ ..++ +|++|++++| .+++.....+..
T Consensus 64 ~l~~L~~L~l~~n~-~~~~~--~-l~~l~~L~~L~l~~-n~l~~~~~~~l-~~l~-~L~~L~Ls~n-~i~~~~~~~l~~- 134 (197)
T 4ezg_A 64 YAHNIKDLTINNIH-ATNYN--P-ISGLSNLERLRIMG-KDVTSDKIPNL-SGLT-SLTLLDISHS-AHDDSILTKINT- 134 (197)
T ss_dssp GCTTCSEEEEESCC-CSCCG--G-GTTCTTCCEEEEEC-TTCBGGGSCCC-TTCT-TCCEEECCSS-BCBGGGHHHHTT-
T ss_pred cCCCCCEEEccCCC-CCcch--h-hhcCCCCCEEEeEC-CccCcccChhh-cCCC-CCCEEEecCC-ccCcHhHHHHhh-
Confidence 45555555555552 22211 1 12345666666665 23332222111 1223 6666666663 455444444444
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 533 HGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
+++|+.|++++|..+++.. ....+++|++|++++|.+++.. .+. .+++|+.|++++
T Consensus 135 -l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--~l~--~l~~L~~L~l~~ 190 (197)
T 4ezg_A 135 -LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--GIE--DFPKLNQLYAFS 190 (197)
T ss_dssp -CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--TGG--GCSSCCEEEECB
T ss_pred -CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--Hhc--cCCCCCEEEeeC
Confidence 6667777776653244432 2335666777777666665532 333 566666666665
No 91
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=8.2e-09 Score=101.37 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=79.1
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHh-cCCCCcEEEecCCCC--CCccch---HH
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGK-LCPQLQNVDLSGLQG--VTDAGF---LP 501 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~--i~~~~~---~~ 501 (645)
|+|++|.|.++..+. .. .+ .+++|++|++..|. +++..+..+.. .+|+|+.|+|+.+.. ..+.++ ..
T Consensus 172 P~L~~L~L~g~~~l~---l~--~~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLS---IG--KK-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TTCCEEEEECCBTCB---CC--SC-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCcEEEEeCCCCce---ec--cc-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 677777776653221 11 12 27899999998775 77888877764 579999999864211 112222 11
Q ss_pred HHh--hcccCceEEEccCCCCCChHHHHHHHH-hhCCCccEEecCCCCCCCHHHHHHHHh---cCCcCCeeeecCCCCCh
Q 006426 502 VLE--SCEAGLAKVNLSGCVNLTDKVVSTMAE-LHGWTLEMLNLDGCRKISDASLMAIAD---NCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 502 l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~L~l~~~~i~~ 575 (645)
++. .+| +|++|++.+| .+.+.....+.. ..+++|+.|+|+. +.+++.+...+.. ++++|+.|++++|.|++
T Consensus 245 ~l~~~~~p-~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFP-NLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCT-TCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCC-CcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 211 122 6666666654 344433333332 1234566666654 3555555444432 34556666666555665
Q ss_pred HHHHHHH
Q 006426 576 FGIASLA 582 (645)
Q Consensus 576 ~~~~~l~ 582 (645)
.++..+.
T Consensus 322 ~~~~~l~ 328 (362)
T 2ra8_A 322 EMKKELQ 328 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=3.7e-10 Score=101.69 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=59.6
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
..+++|++|++++|. +++.....+ ..+++|+.|++++ ..+++.....+ ..++ +|++|++++|..+++.. .+.
T Consensus 85 ~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~Ls~-n~i~~~~~~~l-~~l~-~L~~L~L~~n~~i~~~~--~l~- 156 (197)
T 4ezg_A 85 SGLSNLERLRIMGKD-VTSDKIPNL-SGLTSLTLLDISH-SAHDDSILTKI-NTLP-KVNSIDLSYNGAITDIM--PLK- 156 (197)
T ss_dssp TTCTTCCEEEEECTT-CBGGGSCCC-TTCTTCCEEECCS-SBCBGGGHHHH-TTCS-SCCEEECCSCTBCCCCG--GGG-
T ss_pred hcCCCCCEEEeECCc-cCcccChhh-cCCCCCCEEEecC-CccCcHhHHHH-hhCC-CCCEEEccCCCCccccH--hhc-
Confidence 345566666666554 332222222 2346666666666 34443333322 2333 67777777654344432 233
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCCh
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~ 575 (645)
.+++|+.|++++| .+++.. ....+++|++|++++|+|.+
T Consensus 157 -~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 -TLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC----
T ss_pred -CCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCcccCC
Confidence 3788888888885 666532 23468889999998888654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=3.6e-11 Score=115.01 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEEC 411 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 411 (645)
++|++|+++++. +....... ...+++|++|+++++ .++......+ ..+++|+.|+++++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n 86 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN 86 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTT-TTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC
T ss_pred CCccEEECCCCc-ccccCHhH-hccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC
Confidence 468888887653 43322211 234677777777764 3332111111 23566666666654
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=1.3e-09 Score=104.71 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=17.5
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccc
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEEC 411 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 411 (645)
+++|+.|+++++ .+... .. ...+++|+.|+++++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n 78 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGN 78 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCC
Confidence 456777777664 23221 11 233566666666654
No 95
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=2e-08 Score=88.91 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCccchHHHHhh---cccCceEEEccCCCCCChHHHHHHHHh--hCCCccEEecCCCC
Q 006426 472 SLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES---CEAGLAKVNLSGCVNLTDKVVSTMAEL--HGWTLEMLNLDGCR 546 (645)
Q Consensus 472 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~ 546 (645)
.+..+...+++|++|+++++..++++++..+... .+ +|++|+|++| .+++.+...+... ..++|++|+|++ +
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N 103 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-N 103 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-C
Confidence 3444444556666666666436666655554432 22 5555555553 4555444433320 124555555555 2
Q ss_pred CCCHHHHHHHHh---cCCcCCeeee--cCCCCChHHHHHHHh--cCCCCccEEecCC
Q 006426 547 KISDASLMAIAD---NCPLLCDLDV--SKCAVTDFGIASLAH--GNYLNLQILSLSG 596 (645)
Q Consensus 547 ~l~~~~l~~l~~---~~~~L~~L~l--~~~~i~~~~~~~l~~--~~~~~L~~L~l~~ 596 (645)
.+++.+...+.. ..++|++|+| ++|.|++.+...+.. ..+++|+.|++++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 555554444432 2344555555 445555554443332 1344555555544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=2.4e-09 Score=102.80 Aligned_cols=167 Identities=22% Similarity=0.209 Sum_probs=106.1
Q ss_pred hcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHh
Q 006426 399 AAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGK 478 (645)
Q Consensus 399 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 478 (645)
.+++|+.|++.++. +....- +. ..++|++|+++++. +.+... +..+++|++|++++|. ++.. .. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~---~~-~l~~L~~L~L~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~--~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG---IQ-YLPNVTKLFLNGNK-LTDIKP----LANLKNLGWLFLDENK-VKDL--SS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT---GG-GCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC-CCCG--GG-GT
T ss_pred hcCcccEEEccCCC-cccChh---Hh-cCCCCCEEEccCCc-cCCCcc----cccCCCCCEEECCCCc-CCCC--hh-hc
Confidence 36789999998764 322211 12 23888889888854 333322 5578888888888876 3331 12 34
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
.+++|++|+++++ .+++. ..+..++ +|+.|++++| .+++. ..+.. +++|+.|++++| .+++... ..
T Consensus 110 ~l~~L~~L~L~~n-~i~~~---~~l~~l~-~L~~L~l~~n-~l~~~--~~l~~--l~~L~~L~L~~N-~l~~~~~---l~ 175 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDI---NGLVHLP-QLESLYLGNN-KITDI--TVLSR--LTKLDTLSLEDN-QISDIVP---LA 175 (291)
T ss_dssp TCTTCCEEECTTS-CCCCC---GGGGGCT-TCCEEECCSS-CCCCC--GGGGG--CTTCSEEECCSS-CCCCCGG---GT
T ss_pred cCCCCCEEECCCC-cCCCC---hhhcCCC-CCCEEEccCC-cCCcc--hhhcc--CCCCCEEEccCC-ccccchh---hc
Confidence 5688888888874 44432 1233344 7888888885 45443 22333 788888888874 6655332 44
Q ss_pred cCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 559 NCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
.+++|++|++++|.+++.. .+. .+++|+.|++++|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~--~l~--~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLR--ALA--GLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCBCG--GGT--TCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCCCh--hhc--cCCCCCEEECcCC
Confidence 6788888888888877642 344 7788888888774
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.88 E-value=1.3e-10 Score=110.70 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=95.7
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
..+++|++|++++|. +... . ....+++|++|+++++ .++.... ..+..++ +|++|++++| .++......+.
T Consensus 60 ~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~- 130 (272)
T 3rfs_A 60 QYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTGN-QLQSLPN-GVFDKLT-NLKELVLVEN-QLQSLPDGVFD- 130 (272)
T ss_dssp GGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCT-TCCEEECTTS-CCCCCCTTTTT-
T ss_pred ccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCCC-ccCccCh-hHhcCCc-CCCEEECCCC-cCCccCHHHhc-
Confidence 346666666666654 2221 1 1234567777777763 3332111 1122333 7888888875 44433222233
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHh
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 611 (645)
.+++|+.|++++| +++.... .....+++|++|++++|.++......+. .+++|+.|++++| .++... +.....
T Consensus 131 -~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~-~~~~~~ 203 (272)
T 3rfs_A 131 -KLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQN-QLKSVP-DGVFDR 203 (272)
T ss_dssp -TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCSCCC-TTTTTT
T ss_pred -cCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCCcCccCHHHhc--CCccCCEEECCCC-cCCccC-HHHHhC
Confidence 3789999999985 6664322 2234689999999999998765443344 7899999999985 465322 222234
Q ss_pred ccccccccccccc
Q 006426 612 GQTLLGLNLQHCN 624 (645)
Q Consensus 612 ~~~L~~L~l~~C~ 624 (645)
+++|+.|++++|+
T Consensus 204 l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 204 LTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcCCCEEEccCCC
Confidence 6789999999854
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.87 E-value=1.4e-10 Score=111.32 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=120.5
Q ss_pred hcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccc
Q 006426 372 KGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV 451 (645)
Q Consensus 372 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 451 (645)
..+++++++++.+. .++. +.. ...++++.|+++++. +...... .+. ..++|+.|+++++. +...+..
T Consensus 7 ~~l~~l~~l~~~~~-~l~~--ip~--~~~~~l~~L~L~~N~-l~~~~~~-~~~-~l~~L~~L~L~~n~-l~~~~~~---- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTA--LPP--DLPKDTTILHLSENL-LYTFSLA-TLM-PYTRLTQLNLDRAE-LTKLQVD---- 73 (290)
T ss_dssp ECSTTCCEEECTTS-CCSS--CCS--CCCTTCCEEECTTSC-CSEEEGG-GGT-TCTTCCEEECTTSC-CCEEECC----
T ss_pred cccCCccEEECCCC-CCCc--CCC--CCCCCCCEEEcCCCc-CCccCHH-Hhh-cCCCCCEEECCCCc-cCcccCC----
Confidence 35688999999874 3432 110 113689999998864 3322111 112 23889999998853 4443322
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 452 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 452 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
..+++|++|++++|. +.. +......+++|+.|+++++ .++.... ..+...+ +|++|+++++ .++......+.
T Consensus 74 ~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~-~L~~L~L~~N-~l~~~~~~~~~- 145 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLG-ELQELYLKGN-ELKTLPPGLLT- 145 (290)
T ss_dssp SCCTTCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCT-TCCEEECTTS-CCCCCCTTTTT-
T ss_pred CCCCcCCEEECCCCc-CCc--CchhhccCCCCCEEECCCC-cCcccCH-HHHcCCC-CCCEEECCCC-CCCccChhhcc-
Confidence 467899999999875 321 1112245688999999884 4442211 1122233 8889999885 45543322222
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCC
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMV 600 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l 600 (645)
.+++|+.|++++ ++++.... .....+++|++|++++|+++... ..+. .+++|+.|++++++..
T Consensus 146 -~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip-~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 -PTPKLEKLSLAN-NNLTELPA-GLLNGLENLDTLLLQENSLYTIP-KGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -TCTTCCEEECTT-SCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTT--TTCCCSEEECCSCCBC
T ss_pred -cccCCCEEECCC-CcCCccCH-HHhcCcCCCCEEECCCCcCCccC-hhhc--ccccCCeEEeCCCCcc
Confidence 367888898888 46664322 22345788888999888876321 1222 5668888888876543
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=2.1e-09 Score=113.62 Aligned_cols=170 Identities=24% Similarity=0.188 Sum_probs=85.6
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccC
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSP 453 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 453 (645)
+++|+.|+++++. +.. +..+ ..+++|+.|+|+++. +..... +. .+++|+.|+|++|. +...+ .+..
T Consensus 42 L~~L~~L~l~~n~-i~~--l~~l-~~l~~L~~L~Ls~N~-l~~~~~---l~-~l~~L~~L~Ls~N~-l~~l~----~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKS--VQGI-QYLPNVTKLFLNGNK-LTDIKP---LT-NLKNLGWLFLDENK-IKDLS----SLKD 107 (605)
T ss_dssp HTTCCCCBCTTCC-CCC--CTTG-GGCTTCCEEECTTSC-CCCCGG---GG-GCTTCCEEECCSSC-CCCCT----TSTT
T ss_pred CCCCCEEECcCCC-CCC--ChHH-ccCCCCCEEEeeCCC-CCCChh---hc-cCCCCCEEECcCCC-CCCCh----hhcc
Confidence 4678888887753 332 1122 457788888887753 222211 11 22777777777753 33322 2455
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
+++|++|++++|. +... .. ...+++|+.|+|+++ .++.. ..+..++ +|+.|+|++| .+.+... +. .
T Consensus 108 l~~L~~L~Ls~N~-l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~-~L~~L~Ls~N-~l~~~~~--l~--~ 173 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNN-KITDI---TVLSRLT-KLDTLSLEDN-QISDIVP--LA--G 173 (605)
T ss_dssp CTTCCEEECTTSC-CCCC--GG-GGGCTTCSEEECCSS-CCCCC---GGGGSCT-TCSEEECCSS-CCCCCGG--GT--T
T ss_pred CCCCCEEEecCCC-CCCC--cc-ccCCCccCEEECCCC-ccCCc---hhhcccC-CCCEEECcCC-cCCCchh--hc--c
Confidence 6777777777665 2221 11 234566666666663 33322 2222333 5666666654 3332211 22 2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCCh
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~ 575 (645)
+++|+.|+|++| .+++. .. ...+++|+.|+|++|++.+
T Consensus 174 l~~L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCcCcC
Confidence 555666666553 44432 11 2345556666666555443
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.86 E-value=5.8e-11 Score=110.80 Aligned_cols=201 Identities=12% Similarity=0.039 Sum_probs=96.0
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
++|++|+++++ .++......+ ..+++|+.|++.++..++...... ....++|++|++++|+.+...+.. .+..+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~~--~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPD--ALKEL 104 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTT-TTCTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECTT--SEECC
T ss_pred CcccEEEEeCC-cceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCHH--HhCCC
Confidence 47899999884 4443211122 357888888888764233222111 112278888888876666654422 24467
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCc---EEEecCCCCCCccchHHHHhhcccCce-EEEccCCCCCChHHHHHHH
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQ---NVDLSGLQGVTDAGFLPVLESCEAGLA-KVNLSGCVNLTDKVVSTMA 530 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~i~~~~~~~l~~~~~~~L~-~L~l~~c~~l~~~~~~~l~ 530 (645)
++|++|++++|. +.. +.. ...+++|+ .|+++++..++.-... .+..++ +|+ .|+++++ .++..... ..
T Consensus 105 ~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~-~L~~~L~l~~n-~l~~i~~~-~~ 176 (239)
T 2xwt_C 105 PLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLC-NETLTLKLYNN-GFTSVQGY-AF 176 (239)
T ss_dssp TTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTB-SSEEEEECCSC-CCCEECTT-TT
T ss_pred CCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchh-cceeEEEcCCC-CCcccCHh-hc
Confidence 778888887764 221 111 22345555 6666664244322111 112222 555 6666553 33322111 11
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcC-CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 531 ELHGWTLEMLNLDGCRKISDASLMAIADNC-PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 531 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
. .++|+.|+++++..++..... ...++ ++|++|++++|+++.... ..+++|+.|.+.++
T Consensus 177 ~--~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 N--GTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIARNT 236 (239)
T ss_dssp T--TCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEECTTC
T ss_pred C--CCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCccccCCh-----hHhccCceeeccCc
Confidence 1 245555555553223321111 11234 555555555555432211 13445555555543
No 101
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=6.7e-08 Score=85.45 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=98.2
Q ss_pred chHHHHhhcccCceEEEccCCCCCChHHHHHHHHh--hCCCccEEecCCCCCCCHHHHHHHHh---cCCcCCeeeecCCC
Q 006426 498 GFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAEL--HGWTLEMLNLDGCRKISDASLMAIAD---NCPLLCDLDVSKCA 572 (645)
Q Consensus 498 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~L~l~~~~ 572 (645)
.+..++..++ +|++|+|++|..+++.+...+... ..++|++|+|++| .+++.+...+.. ..++|++|+|++|.
T Consensus 27 ~l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3455555565 899999998658888887766651 2478999999985 899888766543 45789999999999
Q ss_pred CChHHHHHHHh--cCCCCccEEec--CCCCCCCHHHHHHHHHh---cccccccccccccCCChHH
Q 006426 573 VTDFGIASLAH--GNYLNLQILSL--SGCSMVSDKSLGALRKL---GQTLLGLNLQHCNAISTNS 630 (645)
Q Consensus 573 i~~~~~~~l~~--~~~~~L~~L~l--~~c~~l~~~~~~~~~~~---~~~L~~L~l~~C~~l~~~~ 630 (645)
|++.+...+.. ..+++|+.|++ ++ +.|++.+...+... .++|++|++++ +.++..+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~-n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHF-TQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCC-SSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccC-CCCChHH
Confidence 99998887764 26778999999 54 67888886655543 47799999988 5687765
No 102
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.85 E-value=2.7e-10 Score=108.89 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=93.9
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
++|++|+++++ .++......+ ..+++|+.|+++++. +...... .+ ...++|++|+++++. +..... ..+..+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~-~~-~~l~~L~~L~L~~n~-l~~~~~--~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRCE-IQTIEDG-AY-QSLSHLSTLILTGNP-IQSLAL--GAFSGL 99 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTT-TTCTTCSEEECTTCC-CCEECTT-TT-TTCTTCCEEECTTCC-CCEECT--TTTTTC
T ss_pred CCccEEECCCC-cccccCHhHh-ccccCCcEEECCCCc-CCccCHH-Hc-cCCcCCCEEECCCCc-cCccCh--hhhcCC
Confidence 34666666653 3332211112 235666666666542 2211110 01 112566666666543 222211 123455
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChH---HHHHHHH
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK---VVSTMAE 531 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~ 531 (645)
++|++|++++|. +....... ...+++|++|++++ ..++...+...+...+ +|++|++++| .++.. .+..+..
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAH-NLIQSFKLPEYFSNLT-NLEHLDLSSN-KIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCS-SCCCCCCCCGGGGGCT-TCCEEECCSS-CCCEECGGGGHHHHT
T ss_pred ccccEEECCCCC-ccccCchh-cccCCCCCEEECcC-CccceecCchhhccCC-CCCEEECCCC-CCCcCCHHHhhhhhh
Confidence 666666666554 11110000 12346666666666 3333322222233333 6777777764 34332 2222222
Q ss_pred hhCCCcc-EEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 532 LHGWTLE-MLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 532 ~~~~~L~-~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
++.|. .|++++ +.++......+ ...+|++|++++|.++......+. .+++|+.|+++++
T Consensus 175 --L~~l~l~L~ls~-n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 --MPLLNLSLDLSL-NPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 234 (276)
T ss_dssp --CTTCCEEEECCS-SCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTT--TCCSCCEEECCSS
T ss_pred --ccccceeeecCC-CcccccCcccc--CCCcccEEECCCCceeecCHhHhc--ccccccEEEccCC
Confidence 33333 677776 35543221111 234677788877776654333333 6777888888753
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=2.8e-10 Score=108.25 Aligned_cols=180 Identities=15% Similarity=0.098 Sum_probs=114.4
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
++|+.|++.++. +...... . ....++|++|+++++. +...+. ..+..+++|++|++++|. +..... .....+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~i~~--~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSK-A-FHRLTKLRLLYLNDNK-LQTLPA--GIFKELKNLETLWVTDNK-LQALPI-GVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTT-S-SSSCTTCCEEECCSSC-CSCCCT--TTTSSCTTCCEEECCSSC-CCCCCT-TTTTTC
T ss_pred CCCCEEECcCCC-CCeeCHH-H-hcCCCCCCEEECCCCc-cCeeCh--hhhcCCCCCCEEECCCCc-CCcCCH-hHcccc
Confidence 579999998863 3322211 1 1223899999998853 443322 224578999999999875 332111 122456
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|++|+++++ .++..... .+..++ +|++|+++++ .++......+.. +++|+.|+++++ .++...... ...+
T Consensus 109 ~~L~~L~l~~n-~l~~~~~~-~~~~l~-~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~-~~~l 180 (270)
T 2o6q_A 109 VNLAELRLDRN-QLKSLPPR-VFDSLT-KLTYLSLGYN-ELQSLPKGVFDK--LTSLKELRLYNN-QLKRVPEGA-FDKL 180 (270)
T ss_dssp SSCCEEECCSS-CCCCCCTT-TTTTCT-TCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCSCCCTTT-TTTC
T ss_pred cCCCEEECCCC-ccCeeCHH-HhCcCc-CCCEEECCCC-cCCccCHhHccC--CcccceeEecCC-cCcEeChhH-hccC
Confidence 89999999884 44432211 123344 8999999985 555433322333 789999999884 665432222 2457
Q ss_pred CcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 561 PLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
++|++|++++|.++......+. .+++|+.|++++++
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CCcCEEECCCCcCCcCCHHHhc--cccCCCEEEecCCC
Confidence 8999999999987754433444 68899999998855
No 104
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=8e-10 Score=105.08 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=114.1
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCC
Q 006426 375 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPC 454 (645)
Q Consensus 375 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 454 (645)
++|++|+++++ .++......+ ..+++|++|++.++. +.... .......++|++|+++++. +...+. ..+..+
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i~--~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAF-HRLTKLRLLYLNDNK-LQTLP--AGIFKELKNLETLWVTDNK-LQALPI--GVFDQL 108 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSS-SSCTTCCEEECCSSC-CSCCC--TTTTSSCTTCCEEECCSSC-CCCCCT--TTTTTC
T ss_pred CCCCEEECcCC-CCCeeCHHHh-cCCCCCCEEECCCCc-cCeeC--hhhhcCCCCCCEEECCCCc-CCcCCH--hHcccc
Confidence 57999999985 4443221122 358899999998863 33211 1111223899999999854 333332 234678
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
++|++|++++|. +...... ....+++|++|+++++ .++..... .+..++ +|+.|+++++ .++......+.. +
T Consensus 109 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~-~L~~L~L~~n-~l~~~~~~~~~~--l 180 (270)
T 2o6q_A 109 VNLAELRLDRNQ-LKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLT-SLKELRLYNN-QLKRVPEGAFDK--L 180 (270)
T ss_dssp SSCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT-TCCEEECCSS-CCSCCCTTTTTT--C
T ss_pred cCCCEEECCCCc-cCeeCHH-HhCcCcCCCEEECCCC-cCCccCHh-HccCCc-ccceeEecCC-cCcEeChhHhcc--C
Confidence 999999999875 3221111 1235699999999984 44432211 123344 8999999985 555433332333 7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
++|+.|+++++ .++..... ....+++|+.|++++|++.
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCCCee
Confidence 89999999985 66643222 2346899999999999753
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.83 E-value=1.6e-10 Score=107.72 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=23.4
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhC-CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHG-WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC 571 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~-~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~ 571 (645)
+|+.|++++|..++......+.. + ++|+.|++++ +.++.... ..+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~--l~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGG--VYSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTT--CSBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhc--cccCCcEEECCC-CccccCCh----hHhccCceeeccCc
Confidence 45555555542233222222222 3 4555555555 23332111 13455555555543
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=2.3e-09 Score=91.53 Aligned_cols=59 Identities=29% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHH---HHHHhcCCCCccEEecC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI---ASLAHGNYLNLQILSLS 595 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~ 595 (645)
+++|+.|++++| .+++.........+++|++|++++|++++... ..+. .+++|+.|+++
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK--LLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH--HCTTCCEETTB
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH--HCCCcccccCC
Confidence 555555555553 44443222223345556666665555443322 2222 45555555554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.78 E-value=4.8e-09 Score=110.84 Aligned_cols=168 Identities=21% Similarity=0.219 Sum_probs=114.9
Q ss_pred hcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHh
Q 006426 399 AAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGK 478 (645)
Q Consensus 399 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 478 (645)
.+++|+.|.+.++. +.... .+. .+++|+.|+|++|. +..... +..+++|+.|++++|. +... .. ..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~---~l~-~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~-l~~l--~~-l~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ---GIQ-YLPNVTKLFLNGNK-LTDIKP----LTNLKNLGWLFLDENK-IKDL--SS-LK 106 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT---TGG-GCTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCC--TT-ST
T ss_pred cCCCCCEEECcCCC-CCCCh---HHc-cCCCCCEEEeeCCC-CCCChh----hccCCCCCEEECcCCC-CCCC--hh-hc
Confidence 47899999998864 33222 122 23899999999864 333322 5678999999999886 3331 12 34
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
.+++|+.|+|+++ .+++. . -+..++ +|+.|+|++| .+++. ..+. .+++|+.|+|++| .++.... ..
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l--~-~l~~l~-~L~~L~Ls~N-~l~~l--~~l~--~l~~L~~L~Ls~N-~l~~~~~---l~ 172 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDI--N-GLVHLP-QLESLYLGNN-KITDI--TVLS--RLTKLDTLSLEDN-QISDIVP---LA 172 (605)
T ss_dssp TCTTCCEEECTTS-CCCCC--G-GGGGCT-TCSEEECCSS-CCCCC--GGGG--SCTTCSEEECCSS-CCCCCGG---GT
T ss_pred cCCCCCEEEecCC-CCCCC--c-cccCCC-ccCEEECCCC-ccCCc--hhhc--ccCCCCEEECcCC-cCCCchh---hc
Confidence 5689999999985 44432 1 233444 8999999986 55543 2333 3789999999885 6665322 45
Q ss_pred cCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 559 NCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
.+++|++|+|++|.|++. ..+. .+++|+.|+|++|+
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~--~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALA--GLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGT--TCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCCC--hHHc--cCCCCCEEEccCCc
Confidence 789999999999988764 3344 78899999998854
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.70 E-value=4e-09 Score=99.49 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=38.8
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|++++| .+++. ..+. .+++|+.|+++++ ++++.. ....+++|++|++++|.+++. ..+. .+++
T Consensus 107 ~L~~L~L~~N-~l~~~--~~l~--~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l~--~l~~ 173 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DSLI--HLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNEITNT--GGLT--RLKK 173 (263)
T ss_dssp SCCEEECCSS-CCSBS--GGGT--TCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSCCCBC--TTST--TCCC
T ss_pred cccEEEccCC-ccCCC--hhhc--CcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCcCcch--HHhc--cCCC
Confidence 5666666653 34332 1122 2566666666653 454431 123456666666666665554 2233 5566
Q ss_pred ccEEecCC
Q 006426 589 LQILSLSG 596 (645)
Q Consensus 589 L~~L~l~~ 596 (645)
|+.|++++
T Consensus 174 L~~L~l~~ 181 (263)
T 1xeu_A 174 VNWIDLTG 181 (263)
T ss_dssp CCEEEEEE
T ss_pred CCEEeCCC
Confidence 66666665
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.68 E-value=3.7e-09 Score=99.22 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+++|+.|+++++ +++..... ....+++|++|++++|.++......+. .+++|+.|++++++
T Consensus 130 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTNQLQSVPHGAFD--RLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC
T ss_pred CCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCc
Confidence 556666666653 44432211 122456666666666665543322333 55666666666633
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=9.4e-09 Score=87.72 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=71.9
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHH-HHHHHhcCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFG-IASLAHGNYL 587 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~ 587 (645)
+|+.|++++| .++.. ..+. .+++|+.|++++| .++.. +......+++|++|++++|.+++.. ...+. .++
T Consensus 43 ~L~~L~l~~n-~l~~~--~~~~--~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~--~l~ 113 (149)
T 2je0_A 43 ELEFLSTINV-GLTSI--ANLP--KLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK--KLE 113 (149)
T ss_dssp TCCEEECTTS-CCCCC--TTCC--CCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGG--GCT
T ss_pred CCcEEECcCC-CCCCc--hhhh--cCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHh--hCC
Confidence 6677777664 44433 2222 3789999999985 66653 2334456999999999999998854 34555 899
Q ss_pred CccEEecCCCCCCCHHHH--HHHHHhccccccccccc
Q 006426 588 NLQILSLSGCSMVSDKSL--GALRKLGQTLLGLNLQH 622 (645)
Q Consensus 588 ~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~ 622 (645)
+|+.|++++| .++.... ......+++|+.|++++
T Consensus 114 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 114 NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999995 4654322 13445568899998864
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.67 E-value=1.7e-09 Score=101.52 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=94.8
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
++|++|+++++. +....... ...+++|++|++++ ..++.... ..+...+ +|++|+++++ .++......+. .+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~-~L~~L~L~~n-~l~~~~~~~~~--~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDY-NQLQTLSA-GVFDDLT-ELGTLGLANN-QLASLPLGVFD--HL 106 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTT-SCCCCCCT-TTTTTCT-TCCEEECTTS-CCCCCCTTTTT--TC
T ss_pred CCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCC-CcCCccCH-hHhccCC-cCCEEECCCC-cccccChhHhc--cc
Confidence 456666666654 22111111 12346677777766 33332211 1112233 7888888774 45433322232 37
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccc
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQT 614 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 614 (645)
++|++|+++++ +++.... .....+++|++|++++|.++......+. .+++|+.|++++| .++......+ ..+++
T Consensus 107 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~ 180 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTN-QLQSVPHGAF-DRLGK 180 (251)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS-CCSCCCTTTT-TTCTT
T ss_pred CCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCC-cCCccCHHHH-hCCCC
Confidence 89999999984 6664322 2234689999999999998765444454 7899999999984 5653322222 34578
Q ss_pred ccccccccccCCCh
Q 006426 615 LLGLNLQHCNAIST 628 (645)
Q Consensus 615 L~~L~l~~C~~l~~ 628 (645)
|+.|++++ +.++-
T Consensus 181 L~~L~l~~-N~~~c 193 (251)
T 3m19_A 181 LQTITLFG-NQFDC 193 (251)
T ss_dssp CCEEECCS-CCBCT
T ss_pred CCEEEeeC-CceeC
Confidence 99999999 54543
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.66 E-value=3.5e-09 Score=101.57 Aligned_cols=201 Identities=16% Similarity=0.062 Sum_probs=112.4
Q ss_pred CCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhc
Q 006426 347 GLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNC 426 (645)
Q Consensus 347 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (645)
.+++++.+++++.. ++.... ...++++.|+++++ .++......+ ..+++|+.|++.++. ++..... ..
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~----~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPP----DLPKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQVD----GT 75 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCS----CCCTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSC-CCEEECC----SC
T ss_pred ccCCccEEECCCCC-CCcCCC----CCCCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCCc-cCcccCC----CC
Confidence 34566666666532 322110 11346777777763 3432211222 346777777777643 3222111 23
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
.++|++|+++++ .+..++. .+..+++|++|++++|. ++..... ....+++|+.|+++++ .++.... ..+...
T Consensus 76 l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 147 (290)
T 1p9a_G 76 LPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFNR-LTSLPLG-ALRGLGELQELYLKGN-ELKTLPP-GLLTPT 147 (290)
T ss_dssp CTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSSC-CCCCCSS-TTTTCTTCCEEECTTS-CCCCCCT-TTTTTC
T ss_pred CCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCCc-CcccCHH-HHcCCCCCCEEECCCC-CCCccCh-hhcccc
Confidence 378888888874 3343332 24567888888888875 3221111 1234588999998884 4442211 112233
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
+ +|+.|+++++ .++......+. .+++|+.|++++ +.++... .-...+++|+.|++++|++.
T Consensus 148 ~-~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~L~~-N~l~~ip--~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 P-KLEKLSLANN-NLTELPAGLLN--GLENLDTLLLQE-NSLYTIP--KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp T-TCCEEECTTS-CCSCCCTTTTT--TCTTCCEEECCS-SCCCCCC--TTTTTTCCCSEEECCSCCBC
T ss_pred c-CCCEEECCCC-cCCccCHHHhc--CcCCCCEEECCC-CcCCccC--hhhcccccCCeEEeCCCCcc
Confidence 3 8999999985 55543322222 378999999998 4666321 11224678999999999854
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=3.3e-09 Score=92.71 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.8
Q ss_pred cCCcEEecccc
Q 006426 428 EKLKALSLVSC 438 (645)
Q Consensus 428 ~~L~~L~l~~~ 438 (645)
++|++|++++|
T Consensus 24 ~~L~~L~l~~n 34 (168)
T 2ell_A 24 AAVRELVLDNC 34 (168)
T ss_dssp TSCSEEECCSC
T ss_pred ccCCEEECCCC
Confidence 44555555554
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=3.8e-09 Score=92.29 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=44.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHH-HHHHHhcCCCCccEEecCCCCCCCHHHH--HHHHH
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFG-IASLAHGNYLNLQILSLSGCSMVSDKSL--GALRK 610 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~ 610 (645)
+++|+.|++++| .++.. +.....++++|++|++++|.+++.. +..+. .+++|+.|++++|. ++.... .....
T Consensus 70 l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 144 (168)
T 2ell_A 70 LPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCE-VTNLNDYRESVFK 144 (168)
T ss_dssp CSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSG-GGTSTTHHHHHHT
T ss_pred CCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCc-CcchHHHHHHHHH
Confidence 556666666663 44432 2223334666666666666665532 23333 56666666666633 332211 12333
Q ss_pred hccccccccccccc
Q 006426 611 LGQTLLGLNLQHCN 624 (645)
Q Consensus 611 ~~~~L~~L~l~~C~ 624 (645)
.+++|+.|++++|.
T Consensus 145 ~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 145 LLPQLTYLDGYDRE 158 (168)
T ss_dssp TCSSCCEETTEETT
T ss_pred hCccCcEecCCCCC
Confidence 45566666666643
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=2.8e-08 Score=87.40 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=57.3
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
+++|++|++++|. ++. +..+....++|+.|+++++ .++.- ..+..++ +|++|++++| .++......+..
T Consensus 18 ~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~-~L~~L~Ls~N-~l~~~~~~~~~~-- 86 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLR-RLKTLLVNNN-RICRIGEGLDQA-- 86 (176)
T ss_dssp TTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCS-SCCEEECCSS-CCCEECSCHHHH--
T ss_pred cCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCC-CCCEEECCCC-cccccCcchhhc--
Confidence 4555555555553 221 1122233346666666552 33321 1112222 5555555553 333322111222
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHH---HHHHhcCCCCccEEecCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI---ASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~~c 597 (645)
+++|+.|+++++ .+++.........+++|++|++++|+++.... ..+. .+++|+.|+++++
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~--~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY--KVPQVRVLDFQKV 150 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHH--HCTTCSEETTEEC
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHH--HCCccceeCCCcC
Confidence 566666666653 44432211122345666666666665433211 1222 5566666666553
No 116
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.50 E-value=1.1e-06 Score=76.85 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=28.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh---cCCcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCC
Q 006426 535 WTLEMLNLDGCRKISDASLMAIAD---NCPLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSG 596 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~ 596 (645)
..|+.|+|++| .++|.+...+++ .-..|++|+|++|.|++.|...+.+ ...+.|+.|+|++
T Consensus 70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34555555542 455544333332 2244555555555555555554443 1334455555543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=1e-07 Score=89.78 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|+.|+++++ .+++. . -+..++ +|+.|+++++ .+++.. .+. .+++|+.|++++| .+++. .....+
T Consensus 106 ~~L~~L~L~~N-~l~~~--~-~l~~l~-~L~~L~Ls~N-~i~~~~--~l~--~l~~L~~L~L~~N-~i~~~---~~l~~l 171 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDT--D-SLIHLK-NLEILSIRNN-KLKSIV--MLG--FLSKLEVLDLHGN-EITNT---GGLTRL 171 (263)
T ss_dssp SSCCEEECCSS-CCSBS--G-GGTTCT-TCCEEECTTS-CCCBCG--GGG--GCTTCCEEECTTS-CCCBC---TTSTTC
T ss_pred CcccEEEccCC-ccCCC--h-hhcCcc-cccEEECCCC-cCCCCh--HHc--cCCCCCEEECCCC-cCcch---HHhccC
Confidence 55666666653 33321 1 122333 6777777764 454432 233 3778888888874 66554 223467
Q ss_pred CcCCeeeecCCCCChH
Q 006426 561 PLLCDLDVSKCAVTDF 576 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~ 576 (645)
++|+.|++++|+++..
T Consensus 172 ~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCEEEEEEEEEECC
T ss_pred CCCCEEeCCCCcccCC
Confidence 8888888888875543
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.46 E-value=6.9e-10 Score=109.93 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=105.5
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
+++++|+++++. +..... ..+..+++|++|+|+++........ ..+..+++++++.+..++.+....-. .....+
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~--~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPE--AFQNLP 104 (350)
T ss_dssp TTCSEEEEESCC-CSEECT-TSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTT--SBCCCT
T ss_pred CCCCEEEccCCc-CCCcCH-HHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCch--hhhhcc
Confidence 578888888743 443221 1224578888888887532111000 11123556665554444444322111 111226
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|+++++. +...+.. ......++..|++.++..+.......+......++.|++++ +.++.-.-.. +. ..
T Consensus 105 ~L~~L~l~~n~-l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~-f~-~~- 177 (350)
T 4ay9_X 105 NLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSA-FN-GT- 177 (350)
T ss_dssp TCCEEEEEEEC-CSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTS-ST-TE-
T ss_pred ccccccccccc-cccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhh-cc-cc-
Confidence 77777777643 2222111 11234456666665554333221111222224566777766 3443211111 11 11
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCC-CChHHHHHHHhcCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDFGIASLAHGNYL 587 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~ 587 (645)
+|+.|++.+++.++......+.. +++|+.|++++ ++++.... ..+.+|++|.+.++. +.... .+. .++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~--l~~L~~LdLs~-N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP--~l~--~l~ 246 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHG--ASGPVILDISR-TRIHSLPS----YGLENLKKLRARSTYNLKKLP--TLE--KLV 246 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTT--EECCSEEECTT-SCCCCCCS----SSCTTCCEEECTTCTTCCCCC--CTT--TCC
T ss_pred chhHHhhccCCcccCCCHHHhcc--CcccchhhcCC-CCcCccCh----hhhccchHhhhccCCCcCcCC--Cch--hCc
Confidence 67777776655555433222222 56777777776 35543211 234556666655542 22111 122 566
Q ss_pred CccEEecCC
Q 006426 588 NLQILSLSG 596 (645)
Q Consensus 588 ~L~~L~l~~ 596 (645)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 777777754
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.44 E-value=2.7e-08 Score=98.85 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=85.1
Q ss_pred cCCcEEeccccCCCCcccccccccc-CCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVS-PCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
+.++.|+++++ .+...... .+. .+++|++|++++|. ++...... ...+++|+.|++++ +.++.... ..+...
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~--~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAE--WTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRYLDLSS-NHLHTLDE-FLFSDL 111 (361)
T ss_dssp TTCSEEECCSS-CCCEECTT--SSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCS-SCCCEECT-TTTTTC
T ss_pred CCCCEEECCCC-CCCccChh--hhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCEEECCC-CcCCcCCH-HHhCCC
Confidence 56788888874 34443322 133 57788888888775 33221111 23457888888877 34442211 112223
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH--hcCCcCCeeeecCCCCChHHHHHHHhc
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIA--DNCPLLCDLDVSKCAVTDFGIASLAHG 584 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~~ 584 (645)
+ +|+.|+|+++ .++......+.. +++|+.|+|++ ++++......+. ..+++|+.|+|++|+|+......+.
T Consensus 112 ~-~L~~L~L~~N-~i~~~~~~~~~~--l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-- 184 (361)
T 2xot_A 112 Q-ALEVLLLYNN-HIVVVDRNAFED--MAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ-- 184 (361)
T ss_dssp T-TCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH--
T ss_pred c-CCCEEECCCC-cccEECHHHhCC--cccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh--
Confidence 3 7777777774 444332222333 67777777777 355542221110 2467777777777776655444444
Q ss_pred CCCC--ccEEecCCCC
Q 006426 585 NYLN--LQILSLSGCS 598 (645)
Q Consensus 585 ~~~~--L~~L~l~~c~ 598 (645)
.++. |+.|++.+++
T Consensus 185 ~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HSCHHHHTTEECCSSC
T ss_pred hccHhhcceEEecCCC
Confidence 4444 3667777644
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.44 E-value=2.1e-08 Score=91.01 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=44.6
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|+++++ .++......+. .+++|++|+++++ +++.... .....+++|++|++++|.++......+. .+++
T Consensus 77 ~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~ 149 (208)
T 2o6s_A 77 SLTYLNLSTN-QLQSLPNGVFD--KLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTS 149 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTT
T ss_pred CcCEEECCCC-cCCccCHhHhc--CccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCCccceeCHHHhc--cCCC
Confidence 5666666653 33322211122 2567777777663 5543221 1123567777777777766543322233 5677
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++++++
T Consensus 150 L~~L~l~~N~ 159 (208)
T 2o6s_A 150 LQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSCC
T ss_pred ccEEEecCCC
Confidence 7777777744
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.43 E-value=3.3e-08 Score=90.43 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
+++|++|++++ ++++......+ .++++|++|++++|.++......+. .+++|+.|+++++
T Consensus 104 l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 163 (220)
T 2v70_A 104 LESLKTLMLRS-NRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFD--TLHSLSTLNLLAN 163 (220)
T ss_dssp CSSCCEEECTT-SCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTT--TCTTCCEEECCSC
T ss_pred CcCCCEEECCC-CcCCeECHhHc-CCCccCCEEECCCCcCCEECHHHhc--CCCCCCEEEecCc
Confidence 45555555555 24332211111 2355556666655555443323333 4555566666553
No 122
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.41 E-value=1.9e-06 Score=75.21 Aligned_cols=115 Identities=10% Similarity=0.235 Sum_probs=91.1
Q ss_pred HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc---CCcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCCCC
Q 006426 524 KVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADN---CPLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSGCS 598 (645)
Q Consensus 524 ~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~---~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~ 598 (645)
..+..+.. .-+.|++|+|++++.+.+++...+++. -..|++|+|++|.|+|.+...+.. ...+.|+.|+|++ +
T Consensus 31 ~~l~~ll~-~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLRE-DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHT-TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHh-cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34444544 467999999988568999988777653 478999999999999998877764 3778999999998 7
Q ss_pred CCCHHHHHHHHHhc---ccccccccccc-c-CCChHHHHHHHHhccc
Q 006426 599 MVSDKSLGALRKLG---QTLLGLNLQHC-N-AISTNSVDMLVEQLWR 640 (645)
Q Consensus 599 ~l~~~~~~~~~~~~---~~L~~L~l~~C-~-~l~~~~~~~~~~~l~~ 640 (645)
.|++.+...+.... ..|++|+|++| + .++..+...+.+.+..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~ 155 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE 155 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh
Confidence 79999998877653 57999999875 3 6899888877776543
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.40 E-value=9.8e-08 Score=99.67 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=120.7
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccC
Q 006426 374 CPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSP 453 (645)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 453 (645)
+.+|+.|+++++ .++. +.. ..+++|+.|+++++. ++... ...++|+.|+++++ .++.++. +.
T Consensus 58 ~~~L~~L~Ls~n-~L~~--lp~--~l~~~L~~L~Ls~N~-l~~ip------~~l~~L~~L~Ls~N-~l~~ip~----l~- 119 (571)
T 3cvr_A 58 INQFSELQLNRL-NLSS--LPD--NLPPQITVLEITQNA-LISLP------ELPASLEYLDACDN-RLSTLPE----LP- 119 (571)
T ss_dssp HTTCSEEECCSS-CCSC--CCS--CCCTTCSEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSCCCC----CC-
T ss_pred cCCccEEEeCCC-CCCc--cCH--hHcCCCCEEECcCCC-Ccccc------cccCCCCEEEccCC-CCCCcch----hh-
Confidence 358999999985 4443 211 014789999999863 44322 22489999999986 4444433 22
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
.+|++|++++|. ++. +.. .+++|+.|+++++ .++.-.- .. ++|+.|++++| .++..+. +
T Consensus 120 -~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N-~l~~lp~-----~l-~~L~~L~Ls~N-~L~~lp~--l---- 178 (571)
T 3cvr_A 120 -ASLKHLDVDNNQ-LTM--LPE---LPALLEYINADNN-QLTMLPE-----LP-TSLEVLSVRNN-QLTFLPE--L---- 178 (571)
T ss_dssp -TTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSS-CCSCCCC-----CC-TTCCEEECCSS-CCSCCCC--C----
T ss_pred -cCCCEEECCCCc-CCC--CCC---cCccccEEeCCCC-ccCcCCC-----cC-CCcCEEECCCC-CCCCcch--h----
Confidence 299999999886 332 111 5689999999984 4543111 22 38999999986 4554221 1
Q ss_pred CCCccEEecCCCCCCCHHHH--HHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHH
Q 006426 534 GWTLEMLNLDGCRKISDASL--MAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRK 610 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l--~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 610 (645)
.++|+.|+|++| +++.... ..+....+.|+.|++++|.|+.. ...+. .+++|+.|++++ +.++......+..
T Consensus 179 ~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~--~l~~L~~L~L~~-N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 179 PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENIL--SLDPTCTIILED-NPLSSRIRESLSQ 252 (571)
T ss_dssp CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSCCCCC-CGGGG--GSCTTEEEECCS-SSCCHHHHHHHHH
T ss_pred hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCcceec-CHHHh--cCCCCCEEEeeC-CcCCCcCHHHHHH
Confidence 268999999984 6663211 01111123339999999987742 22344 588999999998 5577665555544
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=8.9e-09 Score=108.13 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=78.4
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
..|+.|+++++ .++. +.. +..++ +|+.|++++| .++..+ ..+.. +++|+.|+|++ +.++.. . -..++
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~-~L~~L~Ls~N-~l~~lp-~~~~~--l~~L~~L~Ls~-N~l~~l--p-~l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLL-LVTHLDLSHN-RLRALP-PALAA--LRCLEVLQASD-NALENV--D-GVANL 507 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGT-TCCEEECCSS-CCCCCC-GGGGG--CTTCCEEECCS-SCCCCC--G-GGTTC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccc-cCcEeecCcc-cccccc-hhhhc--CCCCCEEECCC-CCCCCC--c-ccCCC
Confidence 46888888874 4443 112 33344 8888888885 555322 23333 78888888888 466652 2 23468
Q ss_pred CcCCeeeecCCCCChHH-HHHHHhcCCCCccEEecCCCCCCCHH--HHHHHHHhccccccccc
Q 006426 561 PLLCDLDVSKCAVTDFG-IASLAHGNYLNLQILSLSGCSMVSDK--SLGALRKLGQTLLGLNL 620 (645)
Q Consensus 561 ~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~l 620 (645)
++|++|++++|.++... ...+. .+++|+.|++++| .++.. ....+...+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~--~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHh--cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 88899999888877654 44555 7888889998884 45432 12334445677777753
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.33 E-value=8e-08 Score=87.85 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+++|+.|++++ +.++...... +.++++|++|++++|.++......+. .+++|+.|++++++
T Consensus 103 l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNA-NKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CCCCEeCHHH-cCCCCCCCEEECCCCcCCEECHHHHh--CCCCCCEEEeCCCC
Confidence 56666666666 3444322211 22456666666666665544333333 56666666666644
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.33 E-value=1e-07 Score=94.63 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=98.3
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
+.++.|+++++ .++...... +....++|+.|+++++ .+...... .+..+++|++|++++|. +...... ....+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEW-TPTRLTNLHSLLLSHN-HLNFISSE--AFVPVPNLRYLDLSSNH-LHTLDEF-LFSDL 111 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTS-SSSCCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSC-CCEECTT-TTTTC
T ss_pred CCCCEEECCCC-CCCccChhh-hhhcccccCEEECCCC-cCCccChh--hccCCCCCCEEECCCCc-CCcCCHH-HhCCC
Confidence 46899999885 343322111 1113389999999885 44443321 35678999999999886 4322111 22356
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHH---HHhhCCCccEEecCCCCCCCHHHHHHHH
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM---AELHGWTLEMLNLDGCRKISDASLMAIA 557 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l---~~~~~~~L~~L~l~~c~~l~~~~l~~l~ 557 (645)
++|+.|++++ +.++...... +...+ +|+.|+|+++ .++......+ . .+++|+.|+|++ ++++......+.
T Consensus 112 ~~L~~L~L~~-N~i~~~~~~~-~~~l~-~L~~L~L~~N-~l~~l~~~~~~~~~--~l~~L~~L~L~~-N~l~~l~~~~~~ 184 (361)
T 2xot_A 112 QALEVLLLYN-NHIVVVDRNA-FEDMA-QLQKLYLSQN-QISRFPVELIKDGN--KLPKLMLLDLSS-NKLKKLPLTDLQ 184 (361)
T ss_dssp TTCCEEECCS-SCCCEECTTT-TTTCT-TCCEEECCSS-CCCSCCGGGTC------CTTCCEEECCS-SCCCCCCHHHHH
T ss_pred cCCCEEECCC-CcccEECHHH-hCCcc-cCCEEECCCC-cCCeeCHHHhcCcc--cCCcCCEEECCC-CCCCccCHHHhh
Confidence 8999999998 4555322111 22333 8999999985 5554332222 2 378999999998 577654443343
Q ss_pred hcCCc--CCeeeecCCCCC
Q 006426 558 DNCPL--LCDLDVSKCAVT 574 (645)
Q Consensus 558 ~~~~~--L~~L~l~~~~i~ 574 (645)
.++. |+.|++.+|++.
T Consensus 185 -~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 185 -KLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -HSCHHHHTTEECCSSCEE
T ss_pred -hccHhhcceEEecCCCcc
Confidence 4666 488999999864
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.31 E-value=1.7e-07 Score=86.26 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=44.5
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|+++ .++......+. .+++|+.|++++ ++++.. ..-...+++|++|++++|.++......+. .+++
T Consensus 89 ~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~~L~Ls~-N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 160 (229)
T 3e6j_A 89 QLTVLDLGTN-QLTVLPSAVFD--RLVHLKELFMCC-NKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSS 160 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS-SCCCSC--CTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CcCEEECCCC-cCCccChhHhC--cchhhCeEeccC-Cccccc--CcccccCCCCCEEECCCCcCCccCHHHHh--CCCC
Confidence 5666666653 34332211122 256777777766 355522 11124567777777777766543333333 5677
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++.+++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 7777777644
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=2.3e-07 Score=90.84 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 006426 482 QLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCP 561 (645)
Q Consensus 482 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~ 561 (645)
++..+.+.+ .+....+..+...|+ +|+.|+|+++ .++..+...+.. +.+|+.|++.+ ++...+-.. +.+|+
T Consensus 203 ~~~~l~~~~--~l~~~~~~~l~~~~~-~L~~l~L~~n-~i~~I~~~aF~~--~~~L~~l~l~~--ni~~I~~~a-F~~~~ 273 (329)
T 3sb4_A 203 DINFLTIEG--KLDNADFKLIRDYMP-NLVSLDISKT-NATTIPDFTFAQ--KKYLLKIKLPH--NLKTIGQRV-FSNCG 273 (329)
T ss_dssp GCSEEEEEE--CCCHHHHHHHHHHCT-TCCEEECTTB-CCCEECTTTTTT--CTTCCEEECCT--TCCEECTTT-TTTCT
T ss_pred ccceEEEee--eecHHHHHHHHHhcC-CCeEEECCCC-CcceecHhhhhC--CCCCCEEECCc--ccceehHHH-hhCCh
Confidence 344444443 233444555555566 8999999874 355444333433 78899999876 254432222 34688
Q ss_pred cCC-eeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccc
Q 006426 562 LLC-DLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLN 619 (645)
Q Consensus 562 ~L~-~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 619 (645)
+|+ .+++.+ .++..+-.++. .|++|+.|++.+ +.++...-..+ ..|++|+.+.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEE
T ss_pred hccEEEEEcc-cceEEchhhhh--CCccCCEEEeCC-CccCccchhhh-cCCcchhhhc
Confidence 898 999987 55544444555 788999999866 44543222222 2345565543
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.25 E-value=2.7e-07 Score=81.04 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=91.3
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
.+++|+.|+++++ .++. +..+....+ +|++|++++| .++.. ..+. .+++|+.|+++++ .++.... .+..
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~-~L~~L~Ls~N-~l~~~--~~l~--~l~~L~~L~Ls~N-~l~~~~~-~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLD-QFDAIDFSDN-EIRKL--DGFP--LLRRLKTLLVNNN-RICRIGE-GLDQ 85 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTT-CCSEEECCSS-CCCEE--CCCC--CCSSCCEEECCSS-CCCEECS-CHHH
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCC-CCCEEECCCC-CCCcc--cccc--cCCCCCEEECCCC-cccccCc-chhh
Confidence 3689999999995 5542 222333333 8999999996 56653 2333 3789999999994 7764321 2334
Q ss_pred cCCcCCeeeecCCCCChHH-HHHHHhcCCCCccEEecCCCCCCCHHHH--HHHHHhccccccccccccc
Q 006426 559 NCPLLCDLDVSKCAVTDFG-IASLAHGNYLNLQILSLSGCSMVSDKSL--GALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~C~ 624 (645)
.+++|++|++++|.+++.. +..+. .+++|+.|++++|+ ++.... ......+++|+.|+++++.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhh--cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6899999999999987643 23454 78999999999954 543211 1234567889999999943
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.24 E-value=6.2e-08 Score=88.58 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=72.5
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|+++++ .++......+.. +++|+.|++++ +.++..... .+.++++|++|++++|.++......+. .+++
T Consensus 58 ~L~~L~L~~N-~i~~i~~~~~~~--l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~ 130 (220)
T 2v70_A 58 QLRKINFSNN-KITDIEEGAFEG--ASGVNEILLTS-NRLENVQHK-MFKGLESLKTLMLRSNRITCVGNDSFI--GLSS 130 (220)
T ss_dssp TCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCS-SCCCCCCGG-GGTTCSSCCEEECTTSCCCCBCTTSST--TCTT
T ss_pred CCCEEECCCC-cCCEECHHHhCC--CCCCCEEECCC-CccCccCHh-HhcCCcCCCEEECCCCcCCeECHhHcC--CCcc
Confidence 6666666663 444332222333 78999999998 466543322 234689999999999998765444555 7899
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhcccccccccccccCC
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAI 626 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l 626 (645)
|+.|++++ +.++......+ ..+++|+.|++++ +.+
T Consensus 131 L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~-N~l 165 (220)
T 2v70_A 131 VRLLSLYD-NQITTVAPGAF-DTLHSLSTLNLLA-NPF 165 (220)
T ss_dssp CSEEECTT-SCCCCBCTTTT-TTCTTCCEEECCS-CCE
T ss_pred CCEEECCC-CcCCEECHHHh-cCCCCCCEEEecC-cCC
Confidence 99999998 45654322222 3457899999999 444
No 131
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.21 E-value=3.5e-07 Score=83.50 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=36.8
Q ss_pred CcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 64 VSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 64 ~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
..++.||+||+.+||+||+ ++|++++++|||+||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999 99999999999999999866
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.21 E-value=8.8e-07 Score=92.48 Aligned_cols=129 Identities=14% Similarity=0.035 Sum_probs=65.7
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhccc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA 508 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 508 (645)
+|+.|+++++. +..++. .+++|+.|++++|. ++. + ...+++|+.|+++++ .++.-.. +. +
T Consensus 121 ~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N-~L~~lp~--l~----~ 180 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTMLPE------LPALLEYINADNNQ-LTM--L---PELPTSLEVLSVRNN-QLTFLPE--LP----E 180 (571)
T ss_dssp TCCEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSS-CCSCCCC--CC----T
T ss_pred CCCEEECCCCc-CCCCCC------cCccccEEeCCCCc-cCc--C---CCcCCCcCEEECCCC-CCCCcch--hh----C
Confidence 66666666632 333221 35667777777664 221 1 113467777777763 3332111 11 2
Q ss_pred CceEEEccCCCCCChHHH--HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 509 GLAKVNLSGCVNLTDKVV--STMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~--~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+|+.|+|++| .++..+. ..+.. ..+.|+.|++++ +.++... ..+. .+++|+.|+|++|+++......+.
T Consensus 181 ~L~~L~Ls~N-~L~~lp~~~~~L~~-~~~~L~~L~Ls~-N~l~~lp-~~l~-~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPAVPVRNHH-SEETEIFFRCRE-NRITHIP-ENIL-SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp TCCEEECCSS-CCSSCCCCC---------CCEEEECCS-SCCCCCC-GGGG-GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCEEECcCC-CCCchhhHHHhhhc-ccccceEEecCC-CcceecC-HHHh-cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 7777777774 4442211 01111 123338888877 3665321 1122 477888888888887776555544
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=1.2e-07 Score=86.60 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=70.3
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|+++ .++......+.. +++|++|+|++ +.++.... ..+.++++|++|++++|.++......+. .+++
T Consensus 57 ~L~~L~Ls~N-~i~~~~~~~~~~--l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 129 (220)
T 2v9t_B 57 KLRRIDLSNN-QISELAPDAFQG--LRSLNSLVLYG-NKITELPK-SLFEGLFSLQLLLLNANKINCLRVDAFQ--DLHN 129 (220)
T ss_dssp TCCEEECCSS-CCCEECTTTTTT--CSSCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCCEEECCCC-cCCCcCHHHhhC--CcCCCEEECCC-CcCCccCH-hHccCCCCCCEEECCCCCCCEeCHHHcC--CCCC
Confidence 5666666653 344322222333 78899999988 46664322 2234689999999999998776555555 7899
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhcccccccccccc
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHC 623 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 623 (645)
|+.|++++ +.++......+ ...++|+.|+++++
T Consensus 130 L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 130 LNLLSLYD-NKLQTIAKGTF-SPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCS-SCCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCEEECCC-CcCCEECHHHH-hCCCCCCEEEeCCC
Confidence 99999998 45654322222 23577999999993
No 134
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.13 E-value=1.2e-06 Score=81.42 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=37.4
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccch-hhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERS-ACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~-~~~~Vcr~W~~~~~~ 103 (645)
...+..||+||+..||.||+ .++++ ++++|||+|+.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcC
Confidence 46788999999999999999 99999 999999999999866
No 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.10 E-value=2.1e-07 Score=84.42 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=69.5
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|+++++ .++......+. .+++|++|+++++ +++.... ....++++|++|++++|.++......+. .+++
T Consensus 53 ~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~ 125 (208)
T 2o6s_A 53 SLTQLYLGGN-KLQSLPNGVFN--KLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQ 125 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTT
T ss_pred cCcEEECCCC-ccCccChhhcC--CCCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCCcCcccCHhHhc--cCCc
Confidence 5666666553 33322212122 3789999999984 6664322 2234689999999999988754433344 7899
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhccccccccccccc
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCN 624 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 624 (645)
|+.|++++| .++.... .....+++|+.|++++++
T Consensus 126 L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 126 LKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence 999999984 4653221 222346789999999943
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.09 E-value=3.4e-07 Score=82.19 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=16.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAV 573 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i 573 (645)
+++|+.|+++++ .+++.........+++|++|++++|++
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 344555555442 343322111222345555555555443
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=2.6e-07 Score=96.94 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChH--HHHHHHhcCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDF--GIASLAHGNY 586 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~ 586 (645)
+|+.|+|+++ .++..+ .+.. +++|+.|+|++ ++++..........+++|+.|++++|+++.. ....+. ..+
T Consensus 487 ~L~~L~Ls~N-~l~~lp--~l~~--l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~l 559 (567)
T 1dce_A 487 CLEVLQASDN-ALENVD--GVAN--LPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EML 559 (567)
T ss_dssp TCCEEECCSS-CCCCCG--GGTT--CSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHC
T ss_pred CCCEEECCCC-CCCCCc--ccCC--CCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHC
Confidence 6666666663 444322 2333 77888888887 4665542012234688888888888876543 122222 257
Q ss_pred CCccEEec
Q 006426 587 LNLQILSL 594 (645)
Q Consensus 587 ~~L~~L~l 594 (645)
|+|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 88888764
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.02 E-value=4e-08 Score=97.17 Aligned_cols=207 Identities=12% Similarity=0.066 Sum_probs=121.8
Q ss_pred CCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcC
Q 006426 401 FSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480 (645)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 480 (645)
+++++|+++++ .++...- ......++|++|+|+++...+..+.. .+..++++.++.+.++..+...... ....+
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~--~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEIRIEKANNLLYINPE-AFQNL 103 (350)
T ss_dssp TTCSEEEEESC-CCSEECT--TSSTTCTTCCEEEEECCTTCCEECTT--SBCSCTTCCEEEEEEETTCCEECTT-SBCCC
T ss_pred CCCCEEEccCC-cCCCcCH--HHHcCCCCCCEEECcCCCCCCccChh--HhhcchhhhhhhcccCCcccccCch-hhhhc
Confidence 58999999985 3433221 11122389999999997654444322 2456778777655544334322111 12456
Q ss_pred CCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcC
Q 006426 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNC 560 (645)
Q Consensus 481 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~ 560 (645)
++|+.|+++++ .++...-..+.. .. ++..|++.++..+.......+.. ....++.|++++ ++++......+ ..
T Consensus 104 ~~L~~L~l~~n-~l~~~~~~~~~~-~~-~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~-N~i~~i~~~~f--~~ 176 (350)
T 4ay9_X 104 PNLQYLLISNT-GIKHLPDVHKIH-SL-QKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNK-NGIQEIHNSAF--NG 176 (350)
T ss_dssp TTCCEEEEEEE-CCSSCCCCTTCC-BS-SCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCS-SCCCEECTTSS--TT
T ss_pred ccccccccccc-ccccCCchhhcc-cc-hhhhhhhccccccccccccchhh-cchhhhhhcccc-ccccCCChhhc--cc
Confidence 99999999884 433221111111 12 78889998877766543332333 235788999988 57764322111 35
Q ss_pred CcCCeeeecCC-CCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 561 PLLCDLDVSKC-AVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 561 ~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
.+|++|++.++ .++......+. .+++|+.|++++ +.|+.. +. ....+|+.|.+.+|++++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~--~l~~L~~LdLs~-N~l~~l--p~--~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFH--GASGPVILDISR-TRIHSL--PS--YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTT--TEECCSEEECTT-SCCCCC--CS--SSCTTCCEEECTTCTTCC
T ss_pred cchhHHhhccCCcccCCCHHHhc--cCcccchhhcCC-CCcCcc--Ch--hhhccchHhhhccCCCcC
Confidence 78999999864 45543333344 788999999998 456532 11 224457777766666554
No 139
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.98 E-value=5.2e-07 Score=83.01 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=70.6
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|++|+|+++ .++......+. .+++|+.|+|+++ +++.... ..+..+++|++|++++|.++.. ...+. .+++
T Consensus 65 ~L~~L~L~~N-~l~~i~~~~~~--~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~--~l~~ 136 (229)
T 3e6j_A 65 NLKELYLGSN-QLGALPVGVFD--SLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNKLTEL-PRGIE--RLTH 136 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCSC-CTTGG--GCTT
T ss_pred CCcEEECCCC-CCCCcChhhcc--cCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCccccc-Ccccc--cCCC
Confidence 6666666663 34332222222 3789999999994 7764322 2234689999999999987743 12333 7899
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
|+.|++++ +.++.... ......++|+.|++++ +.++
T Consensus 137 L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~-N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQ-NQLKSIPH-GAFDRLSSLTHAYLFG-NPWD 172 (229)
T ss_dssp CSEEECCS-SCCCCCCT-TTTTTCTTCCEEECTT-SCBC
T ss_pred CCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeC-CCcc
Confidence 99999998 45663222 2223457899999999 4454
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.86 E-value=3.6e-06 Score=74.84 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=17.5
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSG 490 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 490 (645)
++|++|+++++. ++... .....+++|+.|++++
T Consensus 31 ~~l~~L~L~~n~-i~~ip--~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVP--KELSNYKHLTLIDLSN 63 (193)
T ss_dssp TTCCEEECCSSC-CCSCC--GGGGGCTTCCEEECCS
T ss_pred CCCCEEECCCCc-CchhH--HHhhcccCCCEEECCC
Confidence 567777777664 22111 1223446666666665
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.86 E-value=1.4e-06 Score=77.53 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=17.1
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecC
Q 006426 455 KSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSG 490 (645)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 490 (645)
++|++|+++++. ++..........+++|++|++++
T Consensus 29 ~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCS
T ss_pred CCCCEEECCCCc-CCccCCccccccCCCCCEEECCC
Confidence 367777777664 22211111123346666666665
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.79 E-value=8.5e-07 Score=78.98 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred cEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCc
Q 006426 458 RSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTL 537 (645)
Q Consensus 458 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L 537 (645)
+.++++++. ++... ....++|++|++++ +.++.-. ..+...+ +|+.|+++++ .++......+.. +++|
T Consensus 13 ~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~-n~i~~ip--~~~~~l~-~L~~L~Ls~N-~i~~i~~~~f~~--l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLP----KGIPRDVTELYLDG-NQFTLVP--KELSNYK-HLTLIDLSNN-RISTLSNQSFSN--MTQL 80 (193)
T ss_dssp TEEECTTSC-CSSCC----SCCCTTCCEEECCS-SCCCSCC--GGGGGCT-TCCEEECCSS-CCCCCCTTTTTT--CTTC
T ss_pred CEEEcCCCC-CCcCC----CCCCCCCCEEECCC-CcCchhH--HHhhccc-CCCEEECCCC-cCCEeCHhHccC--CCCC
Confidence 567777654 22110 01236899999988 4554221 2334444 8999999984 555443333333 7889
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCC
Q 006426 538 EMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSM 599 (645)
Q Consensus 538 ~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~ 599 (645)
+.|++++ +.++......+ .++++|++|++++|.|+......+. .+++|+.|++.+++.
T Consensus 81 ~~L~Ls~-N~l~~i~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 81 LTLILSY-NRLRCIPPRTF-DGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCS-SCCCBCCTTTT-TTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCE
T ss_pred CEEECCC-CccCEeCHHHh-CCCCCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCCCe
Confidence 9999988 46665332222 4678999999999987754433444 678899999988553
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=5.9e-06 Score=80.75 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCccEEEeccCCCCChHHHHHHHhhCCCCCEEecCCC
Q 006426 191 PSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQC 227 (645)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 227 (645)
+++++|.+.+ .+....+..+...+++|+.|+|+++
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcc
Confidence 3789999987 3666777776655899999999986
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.74 E-value=4e-06 Score=74.58 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=6.6
Q ss_pred CCCCCcEEeccCC
Q 006426 453 PCKSLRSLSIRNC 465 (645)
Q Consensus 453 ~~~~L~~L~l~~~ 465 (645)
.+++|++|++++|
T Consensus 52 ~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 52 RLPHLVKLELKRN 64 (192)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 3455555555544
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.70 E-value=1.3e-06 Score=76.65 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred CCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCC
Q 006426 456 SLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGW 535 (645)
Q Consensus 456 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 535 (645)
..+.++++++. +.... ....++|+.|+++++ .++.... ..+...+ +|++|+++++ .++......+. .++
T Consensus 8 ~~~~l~~~~~~-l~~~p----~~~~~~l~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~l~~n-~l~~~~~~~~~--~l~ 76 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVP----TGIPSSATRLELESN-KLQSLPH-GVFDKLT-QLTKLSLSQN-QIQSLPDGVFD--KLT 76 (177)
T ss_dssp ETTEEECCSSC-CSSCC----TTCCTTCSEEECCSS-CCCCCCT-TTTTTCT-TCSEEECCSS-CCCCCCTTTTT--TCT
T ss_pred CCCEEEecCCC-CccCC----CCCCCCCcEEEeCCC-cccEeCH-HHhcCcc-cccEEECCCC-cceEeChhHcc--CCC
Confidence 35677777654 22211 123478999999884 4442211 1223333 8999999885 55543322222 378
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 536 TLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 536 ~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+|+.|++++ ++++.... .....+++|++|++++|.++......+. .+++|+.|++++++
T Consensus 77 ~L~~L~l~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 77 KLTILYLHE-NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccCEEECCC-CCccccCH-HHhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCCC
Confidence 899999988 46654322 1224578899999998887654333333 67889999998855
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.68 E-value=2e-06 Score=77.11 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCcEEeccCCC-CCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhC
Q 006426 456 SLRSLSIRNCP-GFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHG 534 (645)
Q Consensus 456 ~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 534 (645)
.|+...+.+.. .+... ......+++|++|+++++ .++.-. .+..++ +|+.|++++| .++... .... .+
T Consensus 24 ~l~~~~l~~~~~~l~~l--~~~~~~l~~L~~L~ls~n-~l~~l~---~~~~l~-~L~~L~l~~n-~l~~l~--~~~~-~~ 92 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTN-NIEKIS---SLSGME-NLRILSLGRN-LIKKIE--NLDA-VA 92 (198)
T ss_dssp TCSEEECCBCCTTCCCC--HHHHHHTTTCSEEECSEE-EESCCC---CHHHHT-TCCEEEEEEE-EECSCS--SHHH-HH
T ss_pred chheeEeccccCcHhhh--hHHHhcCCCCCEEECCCC-CCcccc---ccccCC-CCCEEECCCC-Cccccc--chhh-cC
Confidence 56666666542 12211 112235699999999984 444321 233344 9999999986 444322 1222 35
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHH-HHHHhcCCCCccEEecCCCCCCCHHH---------
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI-ASLAHGNYLNLQILSLSGCSMVSDKS--------- 604 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~~~L~~L~l~~c~~l~~~~--------- 604 (645)
++|+.|++++| +++... .+ ..+++|++|++++|.+++... ..+. .+++|+.|++++|+ ++...
T Consensus 93 ~~L~~L~L~~N-~l~~l~--~~-~~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~~N~-l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 93 DTLEELWISYN-QIASLS--GI-EKLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLAGNP-LYNDYKENNATSEY 165 (198)
T ss_dssp HHCSEEEEEEE-ECCCHH--HH-HHHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEECSCH-HHHHHHTTTTHHHH
T ss_pred CcCCEEECcCC-cCCcCC--cc-ccCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEecCCc-cccccccccchHHH
Confidence 78999999995 777643 33 368999999999999987543 5565 89999999999854 54321
Q ss_pred HHHHHHhcccccccc
Q 006426 605 LGALRKLGQTLLGLN 619 (645)
Q Consensus 605 ~~~~~~~~~~L~~L~ 619 (645)
.......+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 122345578899887
No 147
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.62 E-value=1.5e-05 Score=82.17 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=37.9
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.|.+..||+||+.+||+||+ .++++++++|||+|++++..
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 68899999999999999999 99999999999999999855
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.60 E-value=1e-05 Score=70.95 Aligned_cols=112 Identities=15% Similarity=0.042 Sum_probs=72.3
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhh
Q 006426 454 CKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELH 533 (645)
Q Consensus 454 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 533 (645)
.++|++|+++++. ++.... .....+++|++|+++++ .++.... ..+...+ +|+.|+++++ .++......+. .
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~-~L~~L~l~~N-~l~~~~~~~~~--~ 98 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLT-KLTILYLHEN-KLQSLPNGVFD--K 98 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCT-TCCEEECCSS-CCCCCCTTTTT--T
T ss_pred CCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCC-cceEeCh-hHccCCC-ccCEEECCCC-CccccCHHHhh--C
Confidence 4789999999875 332111 12245689999999984 5542211 1123344 8999999985 55543322233 3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCCh
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTD 575 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~ 575 (645)
+++|+.|+++++ +++.... .....+++|++|++++|++..
T Consensus 99 l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred CcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 789999999984 6664322 223468999999999998654
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.59 E-value=8e-06 Score=88.62 Aligned_cols=113 Identities=16% Similarity=0.054 Sum_probs=51.9
Q ss_pred ccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHH
Q 006426 451 VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMA 530 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 530 (645)
+..+++|+.|++++|. +.... ..+. .+++|++|+|+++ .++ .+..-+..++ +|+.|+|++| .++.. ...+.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~-~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~-~L~~L~Ls~N-~l~~l-p~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNIS-ANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLS-NLRVLDLSHN-RLTSL-PAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCC-GGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGT-TCCEEECTTS-CCSSC-CSSGG
T ss_pred hccCCCCcEEECCCCC-CCCCC-hhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCC-CCCEEeCcCC-cCCcc-Chhhc
Confidence 4456667777776664 21100 0111 3466666666663 333 1111122233 6666666663 34321 11122
Q ss_pred HhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHH
Q 006426 531 ELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFG 577 (645)
Q Consensus 531 ~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~ 577 (645)
. +++|+.|+|++| .++... .-+..+++|++|+|++|.++...
T Consensus 291 ~--l~~L~~L~L~~N-~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 291 S--CFQLKYFYFFDN-MVTTLP--WEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp G--GTTCSEEECCSS-CCCCCC--SSTTSCTTCCCEECTTSCCCSHH
T ss_pred C--CCCCCEEECCCC-CCCccC--hhhhcCCCccEEeCCCCccCCCC
Confidence 2 556666666653 444211 11234566666666666655443
No 150
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.48 E-value=2.5e-05 Score=79.71 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=37.9
Q ss_pred CCcccCCCHH----HHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDE----CLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~e----il~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.|.+..||+| |+.+||+||+ .++++++++|||+|++++..
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 6889999999 9999999999 99999999999999998865
No 151
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.45 E-value=5.6e-05 Score=77.36 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=38.0
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhh
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSN 103 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~ 103 (645)
.|.+..||+|++.+||+||+ .+|+.++++|||+|+.++.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred CChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCc
Confidence 68999999999999999999 99999999999999999855
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.42 E-value=1.2e-05 Score=69.86 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGC 597 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c 597 (645)
+++|+.|+|++ ++++.... ..+.++++|++|+|++|.++......+. .+++|+.|+++++
T Consensus 53 l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDN-NQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPRGAFD--NLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred cccCCEEECCC-CCcCccCh-hhccCCCCCCEEECCCCccCEeCHHHhc--CCCCCCEEEeCCC
Confidence 55666666666 35543221 1123466677777776665543322233 5666777777663
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=1.7e-05 Score=69.09 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCS 598 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 598 (645)
+++|+.|+|++ ++++.... ..+.++++|++|+|++|.|+......+. .+++|+.|++++++
T Consensus 56 l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 56 LVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLNDNHLKSIPRGAFD--NLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSC
T ss_pred CcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCCCccceeCHHHhc--cccCCCEEEeCCCC
Confidence 56666666666 35543211 1123466677777776665543222233 56667777776643
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.21 E-value=6.4e-06 Score=82.76 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=57.9
Q ss_pred ccCCCCCcEEeccCCCC-CCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHH
Q 006426 451 VSPCKSLRSLSIRNCPG-FGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM 529 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 529 (645)
+..+.+|+.+.+..... +... ....|+.++.+.... ..+.+. .+..|. +|+.+.+.. .++..+-.++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~-~~i~~~----~F~~~~-~L~~i~l~~--~i~~I~~~aF 316 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGS-VIVPEK----TFYGCS-SLTEVKLLD--SVKFIGEEAF 316 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECS-SEECTT----TTTTCT-TCCEEEECT--TCCEECTTTT
T ss_pred ccccccceeEEcCCCcceeecc----ccccccccceeccCc-eeeccc----cccccc-ccccccccc--ccceechhhh
Confidence 34566666666654321 1111 122345666655543 112211 122233 666666654 2322221222
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 530 AELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 530 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
. .+.+|+.++|.+ +++..+-..+ .+|.+|+.+.+..+ ++..+-.++. .|++|+.+++..
T Consensus 317 ~--~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~lp~ 375 (394)
T 4fs7_A 317 E--SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS-LRKIGANAFQ--GCINLKKVELPK 375 (394)
T ss_dssp T--TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTBT--TCTTCCEEEEEG
T ss_pred c--CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc-ccEehHHHhh--CCCCCCEEEECC
Confidence 2 256777777743 2332221222 35777777777544 3332333343 667777777653
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.06 E-value=3.5e-05 Score=66.79 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=70.4
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
..+.++++++ .++..... ..++|+.|++++ ++++...... +.++++|++|++++|.|+......+. .+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~-----~~~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG-----IPTTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQ 79 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC-----CCTTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTT--TCTT
T ss_pred CCCEEEeCCC-CcCccCcc-----CCCCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCCcCccChhhcc--CCCC
Confidence 4567777763 44432211 236899999988 4666532222 34689999999999998765444444 7899
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhcccccccccccccCCC
Q 006426 589 LQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAIS 627 (645)
Q Consensus 589 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 627 (645)
|+.|++++ +.|+..... .....++|+.|++++ +.++
T Consensus 80 L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~-N~~~ 115 (170)
T 3g39_A 80 LTQLSLND-NQLKSIPRG-AFDNLKSLTHIWLLN-NPWD 115 (170)
T ss_dssp CCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCS-SCBC
T ss_pred CCEEECCC-CccCEeCHH-HhcCCCCCCEEEeCC-CCCC
Confidence 99999998 556532221 223457899999999 6564
No 156
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.91 E-value=0.00019 Score=77.94 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=83.9
Q ss_pred CcCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc
Q 006426 427 GEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC 506 (645)
Q Consensus 427 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 506 (645)
.+.|+.|+|+++. +..++.. +..+++|++|+|++|. ++. +......+++|+.|+|+++ .++ .+..-+..+
T Consensus 223 l~~L~~L~Ls~n~-l~~l~~~---~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l 292 (727)
T 4b8c_D 223 DQLWHALDLSNLQ-IFNISAN---IFKYDFLTRLYLNGNS-LTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPAELGSC 292 (727)
T ss_dssp CCCCCEEECTTSC-CSCCCGG---GGGCCSCSCCBCTTSC-CSC--CCGGGGGGTTCCEEECTTS-CCS--SCCSSGGGG
T ss_pred CCCCcEEECCCCC-CCCCChh---hcCCCCCCEEEeeCCc-Ccc--cChhhhCCCCCCEEeCcCC-cCC--ccChhhcCC
Confidence 3899999999865 3344332 3368999999999986 431 1111245699999999994 455 122223344
Q ss_pred ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCC
Q 006426 507 EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVT 574 (645)
Q Consensus 507 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~ 574 (645)
+ +|++|+|++| .++.... .+. .+++|+.|+|++ +.++......+...-..+..|++++|.++
T Consensus 293 ~-~L~~L~L~~N-~l~~lp~-~~~--~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 293 F-QLKYFYFFDN-MVTTLPW-EFG--NLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp T-TCSEEECCSS-CCCCCCS-STT--SCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred C-CCCEEECCCC-CCCccCh-hhh--cCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCccc
Confidence 4 9999999996 5554322 233 389999999999 47775444333221122234667777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.79 E-value=0.0012 Score=61.19 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHhcCCCCcEEEecCCCCCC
Q 006426 474 AVLGKLCPQLQNVDLSGLQGVT 495 (645)
Q Consensus 474 ~~l~~~~~~L~~L~l~~~~~i~ 495 (645)
..+...+|+|+.|+|++ +.++
T Consensus 163 ~i~~~~l~~L~~L~Ls~-N~l~ 183 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSN-NRLY 183 (267)
T ss_dssp HHHHHHCTTCCEEECTT-SCCC
T ss_pred HHHHhhCCCCCEEECCC-CCCC
Confidence 33445678888888877 3443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.75 E-value=0.002 Score=59.59 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=54.1
Q ss_pred hCCCccEEecCCCCCCCHH-HHHHHHhcCCcCCeeeecCCCCChH-HHHHHHhcCCCCccEEecCCCCCCCH------HH
Q 006426 533 HGWTLEMLNLDGCRKISDA-SLMAIADNCPLLCDLDVSKCAVTDF-GIASLAHGNYLNLQILSLSGCSMVSD------KS 604 (645)
Q Consensus 533 ~~~~L~~L~l~~c~~l~~~-~l~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~~L~~L~l~~c~~l~~------~~ 604 (645)
.+++|+.|+|++ |+++.. .+......+++|+.|+|++|.|.+. .+..+. .+ +|+.|++.+++ ++. ..
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCc-CccccCcchhH
Confidence 578888888888 566552 1223344688899999998887765 233332 33 88889998855 543 22
Q ss_pred HHHHHHhccccccccc
Q 006426 605 LGALRKLGQTLLGLNL 620 (645)
Q Consensus 605 ~~~~~~~~~~L~~L~l 620 (645)
...+...+|+|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3345566787887763
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.66 E-value=0.00014 Score=63.18 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=59.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccc
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQT 614 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 614 (645)
++|+.|++++ ++++..... .+.++++|++|+|++|+|+......+. .+++|+.|++++ +.|+... +......++
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~-N~l~~l~-~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPG-VFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLND-NHLKSIP-RGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS-SCCCCCC-TTTTTTCTT
T ss_pred CCCcEEEeCC-CCccccCHH-HhcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCC-CccceeC-HHHhccccC
Confidence 5788888887 466543222 234689999999999998764333334 789999999998 5566321 122234578
Q ss_pred ccccccccccCCC
Q 006426 615 LLGLNLQHCNAIS 627 (645)
Q Consensus 615 L~~L~l~~C~~l~ 627 (645)
|+.|++++ +.+.
T Consensus 107 L~~L~L~~-N~~~ 118 (174)
T 2r9u_A 107 LTHIYLYN-NPWD 118 (174)
T ss_dssp CSEEECCS-SCBC
T ss_pred CCEEEeCC-CCcc
Confidence 99999999 5554
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.43 E-value=0.00016 Score=71.15 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=52.0
Q ss_pred CceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCC
Q 006426 509 GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLN 588 (645)
Q Consensus 509 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 588 (645)
+|+.|+|++++.++......+.. +++|+.|+|++ ++++..... .+.++++|+.|+|++|+++......+. .+ .
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~--l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~--~~-~ 104 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRG--LGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKTVQ--GL-S 104 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCS--CCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTTTC--SC-C
T ss_pred CeeEEEccCCCCCCCcChhHhcc--ccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCCCccceeCHHHcc--cC-C
Confidence 68888888645666544333333 78888888888 466553222 234678888888888876643222222 23 3
Q ss_pred ccEEecCCCC
Q 006426 589 LQILSLSGCS 598 (645)
Q Consensus 589 L~~L~l~~c~ 598 (645)
|+.|++.+++
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 8888888744
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.32 E-value=0.00027 Score=70.56 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 534 GWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 534 ~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
|++|+.+.+.+ +++..+-..+ .+|++|+.+.|..+ ++..+-.++. .+ +|+.|.+.+
T Consensus 299 c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~--~~-~L~~l~l~~ 354 (401)
T 4fdw_A 299 CPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFN--NT-GIKEVKVEG 354 (401)
T ss_dssp CTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSS--SS-CCCEEEECC
T ss_pred CccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCC--CC-CCCEEEEcC
Confidence 56666666653 2332222222 35667777777443 3322223333 55 677777765
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.02 E-value=8.1e-05 Score=74.65 Aligned_cols=145 Identities=16% Similarity=0.242 Sum_probs=81.5
Q ss_pred CCCCcEEeccCCC-CCCHHHHHHHHhcCCCCcEEEecCCC-CCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHH
Q 006426 454 CKSLRSLSIRNCP-GFGDASLAVLGKLCPQLQNVDLSGLQ-GVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAE 531 (645)
Q Consensus 454 ~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 531 (645)
+.+|+.+.+.... .+... ....|..|+.+.+.... .+... .+..|. .++.+..... .+.+.. +.
T Consensus 229 ~~~l~~i~ip~~~~~i~~~----~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~-~l~~~~~~~~-~i~~~~---F~- 294 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKS----VFYGCTDLESISIQNNKLRIGGS----LFYNCS-GLKKVIYGSV-IVPEKT---FY- 294 (394)
T ss_dssp TCCCCEEEECTTCCEECSS----TTTTCSSCCEEEECCTTCEECSC----TTTTCT-TCCEEEECSS-EECTTT---TT-
T ss_pred cCCCceEEECCCceecccc----cccccccceeEEcCCCcceeecc----cccccc-ccceeccCce-eecccc---cc-
Confidence 4667777765431 11111 12356888888886521 11111 122344 6777766552 232222 11
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHh
Q 006426 532 LHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKL 611 (645)
Q Consensus 532 ~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 611 (645)
.+.+|+.+.+.+ ++...+-.. +.+|.+|+.++|..+ ++..+-.++. .|.+|+.+.+... ++..+-.++ ..
T Consensus 295 -~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~-v~~I~~~aF~--~c~~L~~i~lp~~--l~~I~~~aF-~~ 364 (394)
T 4fs7_A 295 -GCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPYL-VEEIGKRSFR--GCTSLSNINFPLS--LRKIGANAF-QG 364 (394)
T ss_dssp -TCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCTT-CCEECTTTTT--TCTTCCEECCCTT--CCEECTTTB-TT
T ss_pred -cccccccccccc--ccceechhh-hcCCCCCCEEEeCCc-ccEEhHHhcc--CCCCCCEEEECcc--ccEehHHHh-hC
Confidence 478999999865 343322222 347999999999754 4433334454 7899999999652 443222222 35
Q ss_pred ccccccccccc
Q 006426 612 GQTLLGLNLQH 622 (645)
Q Consensus 612 ~~~L~~L~l~~ 622 (645)
|.+|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77888888754
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.95 E-value=0.00074 Score=66.30 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=58.2
Q ss_pred cCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 006426 479 LCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAD 558 (645)
Q Consensus 479 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~ 558 (645)
.+++|+.|+|++.+.++...-. .+...+ +|+.|+|+++ .++......+.. +++|+.|+|++ ++++.... .++.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~-~L~~L~l~~N-~l~~~~~~~~~~--l~~L~~L~l~~-N~l~~~~~-~~~~ 101 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-DLRGLG-ELRNLTIVKS-GLRFVAPDAFHF--TPRLSRLNLSF-NALESLSW-KTVQ 101 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-GSCSCC-CCSEEECCSS-CCCEECTTGGGS--CSCCCEEECCS-SCCSCCCS-TTTC
T ss_pred CCCCeeEEEccCCCCCCCcChh-Hhcccc-CCCEEECCCC-ccceeCHHHhcC--CcCCCEEeCCC-CccceeCH-HHcc
Confidence 4578999999864555532211 223344 9999999995 676544333444 89999999998 57764321 1222
Q ss_pred cCCcCCeeeecCCCCC
Q 006426 559 NCPLLCDLDVSKCAVT 574 (645)
Q Consensus 559 ~~~~L~~L~l~~~~i~ 574 (645)
.++ |+.|+|.+|++.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 333 999999999865
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.79 E-value=0.00055 Score=68.29 Aligned_cols=236 Identities=14% Similarity=0.224 Sum_probs=133.1
Q ss_pred CCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCc
Q 006426 349 QKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGE 428 (645)
Q Consensus 349 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (645)
..++.+.+.+ .+....-..+ .+| +|+.+.+... +...+-.++. .+ +|+.+.+.. .+...+-. .+..+ +
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF-~~~-~L~~i~l~~~--i~~I~~~aF~-~~-~L~~i~lp~--~l~~I~~~-aF~~c-~ 180 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAF-RNS-QIAKVVLNEG--LKSIGDMAFF-NS-TVQEIVFPS--TLEQLKED-IFYYC-Y 180 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTT-TTC-CCSEEECCTT--CCEECTTTTT-TC-CCCEEECCT--TCCEECSS-TTTTC-T
T ss_pred CCccEEEECC--ccCEehHhhc-ccC-CccEEEeCCC--ccEECHHhcC-CC-CceEEEeCC--CccEehHH-HhhCc-c
Confidence 5566666654 2222221122 234 7999988752 3222222222 23 688888865 22222211 12233 8
Q ss_pred CCcEEeccccCCCCccccccccccCCCCCcEEeccCC-CCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcc
Q 006426 429 KLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNC-PGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCE 507 (645)
Q Consensus 429 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 507 (645)
+|+.+++.+ +.+..++... +. +.+|+++.+..+ ..+... ....|++|+.+.+.. .++.-+-..|.. +
T Consensus 181 ~L~~l~l~~-n~l~~I~~~a--F~-~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~- 248 (401)
T 4fdw_A 181 NLKKADLSK-TKITKLPAST--FV-YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE--NVSTIGQEAFRE-S- 248 (401)
T ss_dssp TCCEEECTT-SCCSEECTTT--TT-TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT--TCCEECTTTTTT-C-
T ss_pred cCCeeecCC-CcceEechhh--Ee-ecccCEEEeCCchheehhh----HhhCCCCCCEEecCC--CccCcccccccc-C-
Confidence 899999876 2344443332 22 578999988753 112222 234678999999975 333333233322 3
Q ss_pred cCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCC-----HHHHHHHHhcCCcCCeeeecCCCCChHHHHHHH
Q 006426 508 AGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKIS-----DASLMAIADNCPLLCDLDVSKCAVTDFGIASLA 582 (645)
Q Consensus 508 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~-----~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 582 (645)
+|+.+.+.+ .++..+...+. .|++|+.+.+.+. .+. ..+ ...+.+|++|+.+.+.+ .+...+-.++.
T Consensus 249 -~L~~i~lp~--~i~~I~~~aF~--~c~~L~~l~l~~~-~~~~~~~~~I~-~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 249 -GITTVKLPN--GVTNIASRAFY--YCPELAEVTTYGS-TFNDDPEAMIH-PYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp -CCSEEEEET--TCCEECTTTTT--TCTTCCEEEEESS-CCCCCTTCEEC-TTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred -CccEEEeCC--CccEEChhHhh--CCCCCCEEEeCCc-cccCCcccEEC-HHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 899999975 44433333333 3899999999763 222 111 12235799999999984 45544444555
Q ss_pred hcCCCCccEEecCCCCCCCHHHHHHHHHhccccccccccc
Q 006426 583 HGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 583 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 622 (645)
.|++|+.+.+.+ +++...-..+. .| +|+.+.+.+
T Consensus 321 --~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~ 354 (401)
T 4fdw_A 321 --GNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKVEG 354 (401)
T ss_dssp --TCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEECC
T ss_pred --CCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEEcC
Confidence 789999999965 24433223333 45 789988876
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=75.28 E-value=0.45 Score=47.15 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=7.1
Q ss_pred ccCCCCCcEEecc
Q 006426 451 VSPCKSLRSLSIR 463 (645)
Q Consensus 451 ~~~~~~L~~L~l~ 463 (645)
+..|.+|+++.+.
T Consensus 261 F~~c~~L~~i~lp 273 (394)
T 4gt6_A 261 FDSCAYLASVKMP 273 (394)
T ss_dssp TTTCSSCCEEECC
T ss_pred eeecccccEEecc
Confidence 3445566666554
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.80 E-value=0.56 Score=46.42 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=68.0
Q ss_pred hcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH
Q 006426 478 KLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIA 557 (645)
Q Consensus 478 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~ 557 (645)
..|.+|+.+.+.. .+..-+- ..+..|. +|+.+.+.. .++..+-..+.. |.+|+.+.|.. +++..+-.. +
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~-~aF~~c~-~L~~i~l~~--~i~~I~~~aF~~--c~~L~~i~lp~--~v~~I~~~a-F 330 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGT-GAFMNCP-ALQDIEFSS--RITELPESVFAG--CISLKSIDIPE--GITQILDDA-F 330 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECT-TTTTTCT-TCCEEECCT--TCCEECTTTTTT--CTTCCEEECCT--TCCEECTTT-T
T ss_pred eecccccEEeccc--ccceecC-ccccccc-ccccccCCC--cccccCceeecC--CCCcCEEEeCC--cccEehHhH-h
Confidence 4578899888864 2221111 1233455 888888875 344333233333 78899999865 343322222 3
Q ss_pred hcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCCCCCCCHHHHHHHHHhccccccccccc
Q 006426 558 DNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQH 622 (645)
Q Consensus 558 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 622 (645)
.+|.+|+++.|..+ ++..+-.++. .|.+|+.+++.+.. ..... ...+..|+.+.+..
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~~~----~~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSGSR----SQWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESSCH----HHHHT-CBCCCCC-------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECCce----eehhh-hhccCCCCEEEeCC
Confidence 47899999999654 3333334455 78899999998721 12222 12345566665543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.65 E-value=1.4 Score=35.39 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCC
Q 006426 535 WTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAV 573 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i 573 (645)
++|+.|+|++ |+++..... .+..+++|+.|+|.+|++
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~-~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPG-LLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTT-TGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCccChh-hhhhccccCEEEecCCCe
Confidence 3677777777 466543322 233567777777777764
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=68.23 E-value=0.58 Score=46.02 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=69.3
Q ss_pred ccCCCCCcEEeccCCC-CCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHH
Q 006426 451 VSPCKSLRSLSIRNCP-GFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM 529 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 529 (645)
+..+.+|+.+.+...- .+.+. ....|.+|+.+.+.. .++.-+-. .+..|. +|+.+.+.. .+...+...+
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~-~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPK--NVTSIGSF-LLQNCT-ALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECT--TCCEECTT-TTTTCT-TCCEEEECC--CCSEECTTTT
T ss_pred cccccccceeeeccceeEEccc----cccCCccceEEEcCC--CccEeCcc-ccceee-hhccccccc--cceecccccc
Confidence 3456788888776431 11111 123568888888864 23322211 223344 788888765 3433322223
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCccEEecCC
Q 006426 530 AELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSG 596 (645)
Q Consensus 530 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 596 (645)
. .+.+|+.+.+.++ .++..+-.. +.+|.+|+.+.|..+ ++..+-.++. .|.+|+.+.+..
T Consensus 283 ~--~c~~L~~i~l~~~-~i~~I~~~a-F~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 S--GCSNLTKVVMDNS-AIETLEPRV-FMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp T--TCTTCCEEEECCT-TCCEECTTT-TTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred c--ccccccccccccc-ccceehhhh-hcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 2 3778888888652 343222222 246888888888643 3332333444 677777777753
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=60.07 E-value=1 Score=44.18 Aligned_cols=107 Identities=19% Similarity=0.324 Sum_probs=62.4
Q ss_pred ccCCCCCcEEeccCC-CCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhcccCceEEEccCCCCCChHHHHHH
Q 006426 451 VSPCKSLRSLSIRNC-PGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTM 529 (645)
Q Consensus 451 ~~~~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l 529 (645)
+..+.+|+.+.+... ..+.+. ....|.+|+.+.+.. .+..-+.. .+..|. +|+.+.+.+. .++..+...+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~-~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYL-LCSGCS-NLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CCSEECTT-TTTTCT-TCCEEEECCT-TCCEECTTTT
T ss_pred ccCCccceEEEcCCCccEeCcc----ccceeehhccccccc--cceecccc-cccccc-cccccccccc-ccceehhhhh
Confidence 456888888888653 112221 234578899988864 33322222 234565 8999998763 3333222223
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCC
Q 006426 530 AELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKC 571 (645)
Q Consensus 530 ~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~ 571 (645)
. .|.+|+.+.|.. +++..+-..+ .+|.+|+++.+..+
T Consensus 307 ~--~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 307 M--DCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPKS 343 (379)
T ss_dssp T--TCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCTT
T ss_pred c--CCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECCc
Confidence 3 378899999964 3433222223 46889999888643
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=46.80 E-value=20 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=17.8
Q ss_pred cCCcEEeccccCCCCccccccccccCCCCCcEEeccCCCC
Q 006426 428 EKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPG 467 (645)
Q Consensus 428 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 467 (645)
++|+.|+|++ +.++.++.. .+..+++|++|+|.+|+.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~--~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPG--LLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTT--TGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCC-CcCCccChh--hhhhccccCEEEecCCCe
Confidence 3455555555 233333221 133455666666666653
Done!