BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006427
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 422 TGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAG 481
T S K L LS N I I L M LR+L L N I +I + + ++EL+++
Sbjct: 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102
Query: 482 NKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI----QSNIS 537
N+I+ + G+ +L+ L VL MS NKIT + +L A L L L GNP+ + N +
Sbjct: 103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNA 161
Query: 538 DDQLRKAVCSLLPKLVYLNKQPI 560
+ R V LP L L+ P+
Sbjct: 162 TSEYRIEVVKRLPNLKKLDGMPV 184
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 422 TGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAG 481
T S K L LS N I I L M LR+L L N I +I + + ++EL+++
Sbjct: 44 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 103
Query: 482 NKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDD-- 539
N+I+ + G+ +L+ L VL MS NKIT + +L A L L L GNP+ ++ ++
Sbjct: 104 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPLYNDYKENNA 162
Query: 540 --QLRKAVCSLLPKLVYLNKQPI 560
+ R V LP L L+ P+
Sbjct: 163 TSEYRIEVVKRLPNLKKLDGMPV 185
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L + N+++D++ L
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL 169
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 204
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L S NK++ +
Sbjct: 286 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS 344
Query: 512 LGQL 515
L L
Sbjct: 345 LANL 348
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ ++ S+N + + + L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
N+I I L T + EL L GN++ DI L L LT LD++ N+I+ L L
Sbjct: 204 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 229 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKI 484
L L+ S N++ ++ L +T L LD+S N++ I L+ T ++ L N+I
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI 207
Query: 485 SDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI 532
SDI L L L L ++ N++ K +G L A+ +L L+L N I
Sbjct: 208 SDITPLGILTNLDELSLNGNQL---KDIGTL-ASLTNLTDLDLANNQI 251
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 236 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 289
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L S N++ + L+N
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS-LANL 348
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 349 TNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L + N+++D++ L
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFSSNQVTDLKPL 169
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 204
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ ++ S+N + + + L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
N+I I L T + EL L GN++ DI L L LT LD++ N+I+ L L
Sbjct: 204 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 229 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKI 484
L L+ S N++ ++ L +T L LD+S N++ I L+ T ++ L N+I
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI 207
Query: 485 SDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI 532
SDI L L L L ++ N++ K +G L A+ +L L+L N I
Sbjct: 208 SDITPLGILTNLDELSLNGNQL---KDIGTL-ASLTNLTDLDLANNQI 251
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L NK++ +
Sbjct: 286 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 344
Query: 512 LGQL 515
L L
Sbjct: 345 LANL 348
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 236 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 289
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L N++ + L+N
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANL 348
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 349 TNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L + N+++D++ L
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPL 169
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 204
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ +N S+N + + + L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
N+I I L T + EL L GN++ DI L L LT LD++ N+I+ L L
Sbjct: 204 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 260
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 370 EILHANSVIRSLNSSSAVAHIAGIGL-----KAIPTISHFSSLRSVNLSNNFIVHIPTGS 424
+IL N+ I + + + ++ G+ L I + + ++L + LS+N I I S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 148
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKI 484
L LN S N++ ++ L +T L LD+S N++ I L+ T ++ L N+I
Sbjct: 149 GLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI 207
Query: 485 SDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI 532
SDI L L L L ++ N++ K +G L A+ +L L+L N I
Sbjct: 208 SDITPLGILTNLDELSLNGNQL---KDIGTL-ASLTNLTDLDLANNQI 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 229 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 284
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L NK++ +
Sbjct: 286 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 344
Query: 512 LGQL 515
L L
Sbjct: 345 LANL 348
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 236 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 289
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L N++ + L+N
Sbjct: 290 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANL 348
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 349 TNINWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 25/156 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 55 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 114
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L GN+++D++ L
Sbjct: 115 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF-GNQVTDLKPL 172
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 173 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 207
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 232 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 288
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L + NK++ +
Sbjct: 289 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS 347
Query: 512 LGQL 515
L L
Sbjct: 348 LANL 351
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ ++ N P ++ L L++S NK++ I L ++T L L +
Sbjct: 148 ISALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNKVSDISVLAKLTNLESLIAT 206
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
N+I I L T + EL L GN++ DI L L LT LD++ N+I+ L L
Sbjct: 207 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 263
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 239 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 292
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L + N++ + L+N
Sbjct: 293 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANL 351
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 352 TNINWLSAGHNQISDLTPLANLTRITQLGLN 382
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 25/156 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 115
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L GN+++D++ L
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF-GNQVTDLKPL 173
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 208
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 233 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 288
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L NK++ +
Sbjct: 290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 348
Query: 512 LGQL 515
L L
Sbjct: 349 LANL 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ ++ N P ++ L L++S NK++ I L ++T L L +
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNKVSDISVLAKLTNLESLIAT 207
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
N+I I L T + EL L GN++ DI L L LT LD++ N+I+ L L
Sbjct: 208 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 264
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 240 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L N++ + L+N
Sbjct: 294 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANL 352
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLN 383
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 25/156 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L GN+++D++ L
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNF-GNQVTDLKPL 168
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 203
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L S NK++ +
Sbjct: 285 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS 343
Query: 512 LGQL 515
L L
Sbjct: 344 LANL 347
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ +N N P ++ L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLNFGNQVTDLKPLANLTT-LERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI 506
N+I I L T + EL L GN++ DI L L LT LD++ N+I
Sbjct: 203 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 250
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 228 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 283
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 235 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 288
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L S N++ + L+N
Sbjct: 289 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS-LANL 347
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 348 TNINWLSAGHNQISDLTPLANLTRITQLGLN 378
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 25/156 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPK---------------------GLH 430
+G+K+I + + ++L +N SNN + I P ++ K L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL 490
L L N+I I+ L+ +T L L+LS N I I LS T +++L GN+++D++ L
Sbjct: 111 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNF-GNQVTDLKPL 168
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526
L L LD+S NK++ L +L N +SL+A N
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKL-TNLESLIATN 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
I +S +SL+ +N N P ++ L L++S NK++ I L ++T L L +
Sbjct: 144 ISALSGLTSLQQLNFGNQVTDLKPLANLTT-LERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI 506
N+I I L T + EL L GN++ DI L L LT LD++ N+I
Sbjct: 203 NNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 250
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+++ ++L +++S+N + I + L +L + N+I+ I L +T L L L+ N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ IG L++ T + +L LA N+IS++ L L KLT L + N+I+ L L A
Sbjct: 228 LKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 283
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRL 451
G LK I T++ ++L ++L+NN I ++ S L L L N+I+ I L +T L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 452 RVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511
L+L+ N++ I +SN + L L N ISDI + L KL L NK++ +
Sbjct: 285 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 343
Query: 512 LGQL 515
L L
Sbjct: 344 LANL 347
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA-----IPTISHFSSLRSVN 411
A LT ++++L AN+ I +L S + + + L A I ++ ++L ++
Sbjct: 235 ASLTNLTDLDL------ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 288
Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNC 471
L+ N + I S K L L L N I+ I + +T+L+ L N++ + L+N
Sbjct: 289 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANL 347
Query: 472 TLIKELYLAGNKISDIEGLHRLLKLTVLDMS 502
T I L N+ISD+ L L ++T L ++
Sbjct: 348 TNINWLSAGHNQISDLTPLANLTRITQLGLN 378
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 451 LRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEG--LHRLLKLTVLDMSFNKIT 507
++ LDLS+N+I IGHG L C ++ L L ++I+ IEG + L L LD+S N ++
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 508 TTKA--LGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYL 555
+ + G L SL LNL+GNP Q+ V SL P L L
Sbjct: 88 SLSSSWFGPL----SSLKYLNLMGNPYQT--------LGVTSLFPNLTNL 125
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 47/207 (22%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 16 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 60
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMT 449
G++ +P +L S+NLSNN I I P +P + L L+ NK+ I+ L +
Sbjct: 61 ---GIQYLP------NLTSLNLSNNQITDISPIQYLP-NVTKLFLNGNKLTDIKPLANLK 110
Query: 450 RLRVLDLSYNRIFRIG---------------------HGLSNCTLIKELYLAGNKISDIE 488
L L L N++ + +GL + ++ LYL NKI+DI
Sbjct: 111 NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT 170
Query: 489 GLHRLLKLTVLDMSFNKITTTKALGQL 515
L RL KL L + N+I+ L L
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVPLAGL 197
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 143 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 202
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 203 LYLSKNHISDLRALAGLKNLDVL-ELF 228
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 451 LRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEG--LHRLLKLTVLDMSFNKIT 507
++ LDLS+N+I IGHG L C ++ L L ++I+ IEG + L L LD+S N ++
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 508 TTKA--LGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYL 555
+ + G L SL LNL+GNP Q+ V SL P L L
Sbjct: 114 SLSSSWFGPL----SSLKYLNLMGNPYQT--------LGVTSLFPNLTNL 151
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN------------------LSRNKINTI 442
+ S+LR+++L+NN++ + G + LH N L+ NKI +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135
Query: 443 EGLREMTRLRV--LDLSYNRIFRIGHG--LSNCTLIKELYLAGNKISDIEGLHRLLKLTV 498
L E R RV LDL N I + ++ ++ L L N I D++G KL
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195
Query: 499 LDMSFNKI 506
LD+S NK+
Sbjct: 196 LDLSSNKL 203
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 406 SLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463
+++ ++LS N + I + L LNLS N + L ++ LR LDL+ N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 464 IGHGLSNCTL-----------------IKELYLAGNKISDIEGLHRLLKLTV--LDMSFN 504
+ G S TL K +YLA NKI+ + L + V LD+ N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 505 KITTTKALGQLVANYQSLLALNLLGNPI 532
+I T +L A+ +L LNL N I
Sbjct: 155 EIDTVN-FAELAASSDTLEHLNLQYNFI 181
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIE 488
L LNL N I ++G +L+ LDLS N++ +G + + + L NK+ IE
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 489 GLHRL 493
R
Sbjct: 231 KALRF 235
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 403 HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462
S +++ N N+ I + L L+LS N+I+ + L+++T+L L ++ NR+
Sbjct: 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK 98
Query: 463 RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSL 522
+ S C + L+L N++ D + L L L +L + NK+ + LG L L
Sbjct: 99 NLNGIPSAC--LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFL----SKL 152
Query: 523 LALNLLGNPIQSNISDDQLRKA 544
L+L GN I + +L+K
Sbjct: 153 EVLDLHGNEITNTGGLTRLKKV 174
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 428 GLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI 487
G+ TL+ + TIEG++ + L L+L N+I + L N T I EL L+GN + ++
Sbjct: 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV 100
Query: 488 EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSL-LALNLLGN 530
+ L + LD++ +IT L L +N Q L L LN + N
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITN 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
+ + + + + LS N + ++ + + + TL+L+ +I + L ++ L+VL L N+
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
I I L+ T ++ L + ++SD+ L L KLT L NKI+ L L
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
++G LK + I+ S+++++L++ I + + L L L N+I I L +
Sbjct: 91 ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL 150
Query: 449 TRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI 506
T L+ L + ++ + L+N + + L NKISDI L L L + + N+I
Sbjct: 151 TNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI 207
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI 417
+LT+ +E+ LS L S I L S + + + + ++ S+L+ + L N I
Sbjct: 83 NLTKITELELSGNPLKNVSAIAGLQSIKTL-DLTSTQITDVTPLAGLSNLQVLYLDLNQI 141
Query: 418 VHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKEL 477
+I + L L++ +++ + L +++L L N+I I S LI E+
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLI-EV 200
Query: 478 YLAGNKISDIEGLHRLLKLTVLDMSFNKIT 507
+L N+ISD+ L L ++ ++ IT
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTIT 230
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 400 TISHFSSLRSVN---------LSNNFIVHIPTGSMPKG-LHTLNLSRNKINTIEGLREMT 449
T+ +FS+L++V+ L + F++ M + L+L+ + + L ++
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 450 RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTT 509
+ LDLS+NR+ + L+ ++ L + N + +++G+ L +L L + N++ +
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523
Query: 510 KALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP 550
A+ LV+ + L+ LNL GN S ++ +++ + +LP
Sbjct: 524 AAIQPLVSCPR-LVLLNLQGN---SLCQEEGIQERLAEMLP 560
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-S 424
+L + L NSV++ + V H+A L + + + ++LS+N + +P +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGN 482
+ L L S N + ++G+ + RL+ L L NR+ + L +C + L L GN
Sbjct: 484 ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
Query: 483 KISDIEGLHRLL 494
+ EG+ L
Sbjct: 544 SLCQEEGIQERL 555
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 400 TISHFSSLRSVN---------LSNNFIVHIPTGSMPKG-LHTLNLSRNKINTIEGLREMT 449
T+ +FS+L++V+ L + F++ M + L+L+ + + L ++
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 450 RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTT 509
+ LDLS+NR+ + L+ ++ L + N + +++G+ L +L L + N++ +
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523
Query: 510 KALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP 550
A+ LV+ + L+ LNL GN S ++ +++ + +LP
Sbjct: 524 AAIQPLVSCPR-LVLLNLQGN---SLCQEEGIQERLAEMLP 560
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-S 424
+L + L NSV++ + V H+A L + + + ++LS+N + +P +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 425 MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGN 482
+ L L S N + ++G+ + RL+ L L NR+ + L +C + L L GN
Sbjct: 484 ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
Query: 483 KISDIEGLHRLL 494
+ EG+ L
Sbjct: 544 SLCQEEGIQERL 555
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 15 FPDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 59
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NKI + L+++ +
Sbjct: 60 ---GIQYLPNVTKLF------LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 110
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 169
Query: 511 ALGQL 515
L L
Sbjct: 170 PLAGL 174
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 180 LYLSKNHISDLRALAGLKNLDVL-ELF 205
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 438 KINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLT 497
K+ +I+G+ +T L L+L+ N+I I LSN + LY+ NKI+DI L L L
Sbjct: 55 KVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLR 113
Query: 498 VLDMSFNKITTTKALGQLVANY 519
L ++ + I+ L L Y
Sbjct: 114 ELYLNEDNISDISPLANLTKXY 135
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456
I +++ + L S+ + NN I + P ++ + L L + N+I+ I ++++T+L+ L++
Sbjct: 214 ITPVANXTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIGTNQISDINAVKDLTKLKXLNV 272
Query: 457 SYNRIFRIGHGLSNCTLIKELYLAGNKIS--DIEGLHRLLKLTVLDMSFNKITTTKALGQ 514
N+I I L+N + + L+L N++ D E + L LT L +S N IT + L
Sbjct: 273 GSNQISDISV-LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLAS 331
Query: 515 L 515
L
Sbjct: 332 L 332
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
+K + I++ + L S++L+ N I I P S+ LH N+I I + TRL
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASL-TSLHYFTAYVNQITDITPVANXTRLNS 225
Query: 454 LDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALG 513
L + N+I + L+N + + L + N+ISDI + L KL L++ N+I+ L
Sbjct: 226 LKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLN 284
Query: 514 QL 515
L
Sbjct: 285 NL 286
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 390 IAGIGLKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREM 448
+AG + +I I + ++L +NL+ N I I P ++ K L L + NKI I L+ +
Sbjct: 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK-LTNLYIGTNKITDISALQNL 109
Query: 449 TRLRVLDLSYNRI------------FRIGHG----------LSNCTLIKELYLAGNKISD 486
T LR L L+ + I + + G LSN T + L + +K+ D
Sbjct: 110 TNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKD 169
Query: 487 IEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517
+ + L L L +++N+I L L +
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPLASLTS 200
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN------------------LSRNKINTI 442
+ S+LR+++L+NN++ + G + LH N L+ NKI +
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135
Query: 443 EGLREMTRLRV--LDLSYNRIFRIGHG--LSNCTLIKELYLAGNKISDIEGLHRLLKLTV 498
L E R RV LDL N I + ++ ++ L L N I D++G KL
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195
Query: 499 LDMSFNKI 506
LD+S NK+
Sbjct: 196 LDLSSNKL 203
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 406 SLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463
+++ ++LS N + I + L LNLS N + L ++ LR LDL+ N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94
Query: 464 IGHGLSNCTL-----------------IKELYLAGNKISDIEGLHRLL--KLTVLDMSFN 504
+ G S TL K +YLA NKI+ + L ++ LD+ N
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 505 KITTTKALGQLVANYQSLLALNLLGNPI 532
+I T +L A+ +L LNL N I
Sbjct: 155 EIDTVN-FAELAASSDTLEHLNLQYNFI 181
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIE 488
L LNL N I ++G +L+ LDLS N++ +G + + + L NK+ IE
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 489 GLHRL 493
R
Sbjct: 231 KALRF 235
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 415 NFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLI 474
N +VH+P L +L L NKI I L +T+L L L N+I I L+ T +
Sbjct: 146 NGLVHLPQ------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 475 KELYLAGNKISDIEGLHRLLKLTVLDM 501
+ LYL+ N ISD+ L L L VL++
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 341 IFPPSP--ETGKS--PARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLK 396
IFP + ET K+ +S ++E+N ++I+ NS I+S+ G++
Sbjct: 35 IFPDAAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-----------GIQ 83
Query: 397 AIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456
+P ++ L+ N + I + K L L L NKI + L+++ +L+ L L
Sbjct: 84 YLPNVTKLF------LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 137
Query: 457 SYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
+N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+ L L
Sbjct: 138 EHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 201 LYLSKNHISDLRALAGLKNLDVL-ELF 226
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 415 NFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLI 474
N +VH+P L +L L NKI I L +T+L L L N+I I L+ T +
Sbjct: 146 NGLVHLPQ------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 475 KELYLAGNKISDIEGLHRLLKLTVLDM 501
+ LYL+ N ISD+ L L L VL++
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 22/179 (12%)
Query: 341 IFPPSP--ETGKS--PARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLK 396
IFP + ET K +S ++E+N ++I+ NS I+S+ G++
Sbjct: 35 IFPDAAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-----------GIQ 83
Query: 397 AIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL 456
+P ++ L+ N + I + K L L L NKI + L+++ +L+ L L
Sbjct: 84 YLPNVTKLF------LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 137
Query: 457 SYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515
+N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+ L L
Sbjct: 138 EHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 201 LYLSKNHISDLRALAGLKNLDVL-ELF 226
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 428 GLHTLNLSRNKIN---TIEGLREMTRLRVLDLSYNRIFR---IGHGLSN-CTLIKELYLA 480
GL LN+S N ++ + G ++ L VLDLS N I +G LS+ C +K L ++
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 481 GNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537
GNKIS + R + L LD+S N +T + + +L L++ GN + + S
Sbjct: 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFS 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK---INTIEG---- 444
G K PT+S+ S L S++LS N++ +G++P L +L+ R+ +N +EG
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 445 -LREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISD--IEGLHRLLKLTVLD 500
L + L L L +N + I GLSNCT + + L+ N+++ + + RL L +L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 501 MSFNKIT 507
+S N +
Sbjct: 521 LSNNSFS 527
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 428 GLHTLNLSRNKIN---TIEGLREMTRLRVLDLSYNRIFR---IGHGLSN-CTLIKELYLA 480
GL LN+S N ++ + G ++ L VLDLS N I +G LS+ C +K L ++
Sbjct: 124 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 183
Query: 481 GNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537
GNKIS + R + L LD+S N +T + + +L L++ GN + + S
Sbjct: 184 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFS 237
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK---INTIEG---- 444
G K PT+S+ S L S++LS N++ +G++P L +L+ R+ +N +EG
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 445 -LREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISD--IEGLHRLLKLTVLD 500
L + L L L +N + I GLSNCT + + L+ N+++ + + RL L +L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 501 MSFNKIT 507
+S N +
Sbjct: 518 LSNNSFS 524
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 18 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 62
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NK+ + L+++ +
Sbjct: 63 ---GIQYLPNVTKLF------LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 113
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172
Query: 511 ALGQL 515
L L
Sbjct: 173 PLAGL 177
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVL-ELF 208
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 428 GLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI 487
G+ TL+ + TIEG++ + L L+L N+I + L N T I EL L+GN + ++
Sbjct: 48 GIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV 106
Query: 488 EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSL-LALNLLGN 530
+ L + LD++ +IT L L +N Q L L LN + N
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITN 149
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 28/194 (14%)
Query: 340 VIFPPSPETGKSPARSTAHLTRRSEINLSEEILHA-----------NSVIRSLNSSSAVA 388
VIFP PA + A T + N+++ + A N+ + ++ +
Sbjct: 17 VIFP-------DPALANAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLN 69
Query: 389 HIAGIGLKA-----IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE 443
++ G+ LK + + + + + + LS N + ++ + + + TL+L+ +I +
Sbjct: 70 NLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 129
Query: 444 GLREMTRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDM 501
L ++ L+VL L N+I I GL+N ++ L + N+++D+ L L KLT L
Sbjct: 130 PLAGLSNLQVLYLDLNQITNISPLAGLTN---LQYLSIGNNQVNDLTPLANLSKLTTLRA 186
Query: 502 SFNKITTTKALGQL 515
NKI+ L L
Sbjct: 187 DDNKISDISPLASL 200
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
++G LK + I+ S+++++L++ I + + L L L N+I I L +
Sbjct: 97 ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL 156
Query: 449 TRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITT 508
T L+ L + N++ + L+N + + L NKISDI L L L + + N+I+
Sbjct: 157 TNLQYLSIGNNQVNDLTP-LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISD 215
Query: 509 TKALGQL 515
L L
Sbjct: 216 VSPLANL 222
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI 417
+LT+ +E+ LS L S I L S + + + + ++ S+L+ + L N I
Sbjct: 89 NLTKITELELSGNPLKNVSAIAGLQSIKTL-DLTSTQITDVTPLAGLSNLQVLYLDLNQI 147
Query: 418 VHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKEL 477
+I + L L++ N++N + L +++L L N+I I S LI E+
Sbjct: 148 TNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLI-EV 206
Query: 478 YLAGNKISDIEGLHRLLKLTVLDMS 502
+L N+ISD+ L L L ++ ++
Sbjct: 207 HLKDNQISDVSPLANLSNLFIVTLT 231
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 374 ANSVIRSLNSSSAVAHI---AGIGLKAI--PTISHF-----SSLRSVNLSNNFIVHIPTG 423
+N++ +S S +AH AG G I P + F SS+R ++LS+ F+ + +
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 424 SMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRI----GHGLSNCTLIK 475
K L LNL+ NKIN I E + L+VL+LSYN + + +GL I
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 476 ELYLAGNKISDIEG--LHRLLKLTVLDMSFNKITT 508
L N I+ I+ L KL LD+ N +TT
Sbjct: 345 ---LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
L ++P SH ++LR ++L++N + + +P L L++SRN++ L
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL-LAPNPDVFVSLS 550
Query: 453 VLDLSYNRI 461
VLD+++N+
Sbjct: 551 VLDITHNKF 559
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 18 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 62
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NK+ + L+++ +
Sbjct: 63 ---GIQYLPNVTKLF------LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 113
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172
Query: 511 ALGQL 515
L L
Sbjct: 173 PLAGL 177
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVL-ELF 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 16 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 60
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NK+ + L+++ +
Sbjct: 61 ---GIQYLPNVTKLF------LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 111
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 112 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 170
Query: 511 ALGQL 515
L L
Sbjct: 171 PLAGL 175
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 180
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 181 LYLSKNHISDLRALAGLKNLDVL-ELF 206
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTL--NLSRNKINTIEG--LREMTRLRVLD 455
SHF+ L + L+ N I I + H L NLS+N + +I+ + +L VLD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 456 LSYNRIFRIGH----GLSNCTLIKELYLAGNKISDI 487
LSYN I +G GL N +KEL L N++ +
Sbjct: 354 LSYNHIRALGDQSFLGLPN---LKELALDTNQLKSV 386
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 13 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 57
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NK+ + L+++ +
Sbjct: 58 ---GIQYLPNVTKLF------LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 108
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 109 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 167
Query: 511 ALGQL 515
L L
Sbjct: 168 PLACL 172
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQN 177
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 178 LYLSKNHISDLRALCGLKNLDVL-ELF 203
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTL-IKELYLAGN---KISDI 487
++ S N+I ++G + RL+ L ++ NRI RIG GL + EL L N ++ D+
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106
Query: 488 EGLHRLLKLTVLDMSFNKITTTK 510
+ L L LT L + N +T K
Sbjct: 107 DPLASLKSLTYLCILRNPVTNKK 129
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 16 FSDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 60
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NK+ + L+++ +
Sbjct: 61 ---GIQYLPNVTKLF------LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 111
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I
Sbjct: 112 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIV 170
Query: 511 ALGQL 515
L +L
Sbjct: 171 PLARL 175
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I I L +T+L+
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQN 180
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 181 LYLSKNHISDLRALRGLKNLDVL-ELF 206
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 36 FPDDAFAETI-------KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 80
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NKI + L+++ +
Sbjct: 81 ---GIQYLPNVTKLF------LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 131
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 132 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 190
Query: 511 ALGQL 515
L L
Sbjct: 191 PLAGL 195
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 201 LYLSKNHISDLRALAGLKNLDVL-ELF 226
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 13 FPDDAFAETI-------KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 57
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P ++ L+ N + I + K L L L NKI + L+++ +
Sbjct: 58 ---GIQYLPNVTKLF------LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 108
Query: 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
L+ L L +N I I +GL + ++ LYL NKI+DI L RL KL L + N+I+
Sbjct: 109 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 167
Query: 511 ALGQL 515
L L
Sbjct: 168 PLAGL 172
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
G+ I + H L S+ L NN I I S L TL+L N+I+ I L +T+L+
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 177
Query: 454 LDLSYNRI--FRIGHGLSNCTLIKELY 478
L LS N I R GL N ++ EL+
Sbjct: 178 LYLSKNHISDLRALAGLKNLDVL-ELF 203
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 41/191 (21%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+ + ++
Sbjct: 13 FPDDAFAETI-------KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65
Query: 391 -----AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG-------------------SMP 426
G L I + ++L + L+ N + +P G S+P
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 427 KG-------LHTLNLSRNKINTI-EGLRE-MTRLRVLDLSYNRIFRIGHGLSN-CTLIKE 476
G L LNL+ N++ ++ +G+ + +T L LDLSYN++ + G+ + T +K+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 477 LYLAGNKISDI 487
L L N++ +
Sbjct: 186 LRLYQNQLKSV 196
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 409 SVNLSNNFIVHIPTGSMPKGLHT-LNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH 466
+++LSN I +I T L L+ N + + ++ ++ LRVLDLS+NR+ +
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 467 GLSNCTLIKELYLAGNKIS----DIEGLHRLLKLTV----LDMSFNKITTTKALGQLV 516
L +C +K Y N ++ + L L L V L+ F KI T K++ L+
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI 345
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 435 SRNKINTI-EGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GL 490
S +N+I GL E ++ LDLS NRI I + L C ++ L L N I+ IE
Sbjct: 39 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534
L L LD+S+N ++ + SL LNLLGNP ++
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKT 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 363 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 416
Query: 451 LRVLDLSYNRIFR--IGH---GLSNCTLIKELYLAGNK 483
L VLDL N I + G GL N I E+YL+ NK
Sbjct: 417 LEVLDLGLNEIGQELTGQEWRGLEN---IFEIYLSYNK 451
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 358 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 411
Query: 451 LRVLDLSYNRIFR--IGH---GLSNCTLIKELYLAGNK 483
L VLDL N I + G GL N I E+YL+ NK
Sbjct: 412 LEVLDLGLNEIGQELTGQEWRGLEN---IFEIYLSYNK 446
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 435 SRNKINTI-EGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GL 490
S +N+I GL E ++ LDLS NRI I + L C ++ L L N I+ IE
Sbjct: 13 SSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534
L L LD+S+N ++ + SL LNLLGNP ++
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKT 112
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIP-TGSMPKGLHTLNLSRNKINTIEGLRE 447
H+A + K T+ +L ++++S N +P T P+ + LNLS +I+++ G
Sbjct: 372 HLASLE-KTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIP 430
Query: 448 MTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI 506
T L +LD+S N + L +KELY++ NK+ + L L VL +S N++
Sbjct: 431 KT-LEILDVSNNNLNLFSLNLPQ---LKELYISRNKLMTLPDASLLPMLLVLKISRNQL 485
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTR 450
I LK + + F+SLR+ L+N V + LH LNL++NKI+ IE +
Sbjct: 353 INLKYLSLSNSFTSLRT--LTNETFVSLAHSP----LHILNLTKNKISKIESDAFSWLGH 406
Query: 451 LRVLDLSYNRIFR--IGH---GLSNCTLIKELYLAGNK 483
L VLDL N I + G GL N I E+YL+ NK
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLEN---IFEIYLSYNK 441
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
T +SL+++ LS+N + H+ +P H N+S N ++T L + LD S+N
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA-NVSYNLLST---LAIPIAVEELDASHN 221
Query: 460 RIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI--------TTTKA 511
I + G N L L L N ++D L L +D+S+N++ +
Sbjct: 222 SI-NVVRGPVNVELTI-LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 512 LGQLVANYQSLLALNLLGNPI 532
L +L + L+ALNL G PI
Sbjct: 280 LERLYISNNRLVALNLYGQPI 300
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 42/177 (23%)
Query: 367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM- 425
+ E I + +R N+ V GI K +P LR +N SNN I I G+
Sbjct: 26 IPEHIPQYTAELRLNNNEFTVLEATGI-FKKLP------QLRKINFSNNKITDIEEGAFE 78
Query: 426 -PKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGH----GLSNCTLIKELY 478
G++ + L+ N++ ++ + + L+ L L NRI +G+ GLS+ ++ L
Sbjct: 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS---VRLLS 135
Query: 479 LAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSN 535
L N+I+ TV +F+ + SL LNLL NP N
Sbjct: 136 LYDNQIT-----------TVAPGAFDTL-------------HSLSTLNLLANPFNCN 168
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTL---NLSRNKINTIEG--LREMTRLRVLDLSYNR 460
SL ++L N I + S+ KGL+ L LS N I+ ++ L LR L L+ N+
Sbjct: 193 SLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDI 487
+ ++ GL++ I+ +YL N IS I
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTL---NLSRNKINTIEG--LREMTRLRVLDLSYNR 460
SL ++L N I + S+ KGL+ L LS N I+ ++ L LR L L+ N+
Sbjct: 193 SLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 461 IFRIGHGLSNCTLIKELYLAGNKISDI 487
+ ++ GL++ I+ +YL N IS I
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
+SL+++ LS+N + H+ +P H N+S N ++T L + LD S+N I +
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFHA-NVSYNLLST---LAIPIAVEELDASHNSI-NV 219
Query: 465 GHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI--------TTTKALGQLV 516
G N L L L N ++D L L +D+S+N++ + L +L
Sbjct: 220 VRGPVNVELTI-LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 517 ANYQSLLALNLLGNPI 532
+ L+ALNL G PI
Sbjct: 279 ISNNRLVALNLYGQPI 294
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 49/179 (27%)
Query: 331 FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHI 390
F DD AE + +S ++E+N ++I+ NS I+S+
Sbjct: 13 FPDDAFAETI-------KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------- 57
Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
G++ +P + + + L NK++ I L+E+T
Sbjct: 58 ---GIQYLPNVRYLA----------------------------LGGNKLHDISALKELTN 86
Query: 451 LRVLDLSYNRIFRIGHGLSN-CTLIKELYLAGNKISDI-EGLH-RLLKLTVLDMSFNKI 506
L L L+ N++ + +G+ + T +KEL L N++ + +G+ +L LT L + N++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 407 LRSVNLSNNFI---VHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYNRIF 462
L+ ++LS+N + P+ P L++LNLS + + +GL +L VLDLSYNR+
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287
Query: 463 R 463
R
Sbjct: 288 R 288
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRDLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1TQQ|A Chain A, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|B Chain B, Structure Of Tolc In Complex With Hexamminecobalt
pdb|1TQQ|C Chain C, Structure Of Tolc In Complex With Hexamminecobalt
Length = 471
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 522 LLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIK---PQRARELLTD------S 572
L A N L N + +QLR+ + P+L LN + K PQ LL + S
Sbjct: 169 LTARNNLDNAV------EQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLS 222
Query: 573 IAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQRSSTSIGQRSRSKSKTR 621
+ +A L SQ R+ + R + G LP+ + +ST I S S SKTR
Sbjct: 223 LLQARL---SQDLAREQI-RQAQDGHLPTLDLTASTGISDTSYSGSKTR 267
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|2WMZ|A Chain A, Structure Of A Mutated Tolc
pdb|2WMZ|B Chain B, Structure Of A Mutated Tolc
pdb|2WMZ|C Chain C, Structure Of A Mutated Tolc
Length = 428
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 522 LLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIK---PQRARELLTD------S 572
L A N L N + +QLR+ + P+L LN + K PQ LL + S
Sbjct: 169 LTARNNLDNAV------EQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLS 222
Query: 573 IAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQRSSTSIGQRSRSKSKTR 621
+ +A L SQ R+ + R + G LP+ + +ST I S S SKTR
Sbjct: 223 LLQARL---SQDLAREQI-RQAQDGHLPTLDLTASTGISDTSYSGSKTR 267
>pdb|2XMN|A Chain A, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|B Chain B, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|C Chain C, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
Length = 428
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 522 LLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIK---PQRARELLTD------S 572
L A N L N + +QLR+ + P+L LN + K PQ LL + S
Sbjct: 169 LTARNNLDNAV------EQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLS 222
Query: 573 IAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQRSSTSIGQRSRSKSKTR 621
+ +A L SQ R+ + R + G LP+ + +ST I S S SKTR
Sbjct: 223 LLQARL---SQDLAREQI-RQAQDGHLPTLDLTASTGISDTSYSGSKTR 267
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 522 LLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIK---PQRARELLTD------S 572
L A N L N + +QLR+ + P+L LN + K PQ LL + S
Sbjct: 169 LTARNNLDNAV------EQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLS 222
Query: 573 IAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQRSSTSIGQRSRSKSKTR 621
+ +A L SQ R+ + R + G LP+ + +ST I S S SKTR
Sbjct: 223 LLQARL---SQDLAREQI-RQAQDGHLPTLDLTASTGISDTSYSGSKTR 267
>pdb|2VDD|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
Length = 460
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 539 DQLRKAVCSLLPKLVYLNKQPIK---PQRARELLTD------SIAKAVLGNSSQSSQRKA 589
+QLR+ + P+L LN + K PQ LL + S+ +A L SQ R+
Sbjct: 202 EQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKRNLSLLQARL---SQDLAREQ 258
Query: 590 VKRTGRSGSLPSSNQRSSTSIGQRSRSKSKTR 621
+ R + G LP+ + +ST I S S SKTR
Sbjct: 259 I-RQAQDGHLPTLDLTASTGISDTSYSGSKTR 289
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436
++ S + A+A I G P + S+ V+ SN + H+P +P L+LS+
Sbjct: 8 IVGSFHFVCALALIVG---SMTPFSNELESM--VDYSNRNLTHVP-KDLPPRTKALSLSQ 61
Query: 437 NKINTIE--GLREMTRLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIEGLHRL 493
N I+ + + ++ LRVL LS+NRI + H ++ L ++ N++ +I +
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PM 120
Query: 494 LKLTVLDMSFNK---ITTTKALGQL 515
L LD+SFN + K G L
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNL 145
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 4 ICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 62
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 63 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 121
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 122 RGLGELQELY 131
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 179 HSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLF 218
H G+ + S + DRV LKK+S S+I + S RLW L+
Sbjct: 89 HIGNVDELLSTYPVDRVYLKKYSDSRI--TNSERLWDNLY 126
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRDLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLD 455
I +S +S VN + +P +PK L+LS N + T + L TRL L+
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 456 LSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLL-KLTVLDMSFNKITT-----T 509
L + ++ ++ L L+ N++ + L + L LTVLD+SFN++T+
Sbjct: 62 LDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 510 KALGQLVANY 519
+ LG+L Y
Sbjct: 121 RGLGELQELY 130
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 405 SSLRSVNLSNNFIVHIPTGSMPK-------GLHTLNLSRNKINTIEG--LREMTRLRVLD 455
+ L +NL++ I H ++P L LNLS N I+TIEG L E+ RL+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 456 LSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIE 488
L ++ + + ++ L ++GN+++ +E
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 429 LHTLNLSRN--KINTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTL--IKELYLAGNK 483
L+TL ++ N K NT+ T L LDLS ++ +I G+ + TL ++ L ++ N
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNN 508
Query: 484 ISDIEGLH--RLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI 532
+ ++ H +L L+ LD SFN+I T+K + Q +SL NL N +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP--KSLAFFNLTNNSV 557
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 429 LHTLNLSRN--KINTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTL--IKELYLAGNK 483
L+TL ++ N K NT+ T L LDLS ++ +I G+ + TL ++ L ++ N
Sbjct: 445 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNN 503
Query: 484 ISDIEGLH--RLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPI 532
+ ++ H +L L+ LD SFN+I T+K + Q +SL NL N +
Sbjct: 504 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP--KSLAFFNLTNNSV 552
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 372 LHANSV-IRSLNSSSAVAHIAGIGLK-------AIPTISHFSSLRSVNLSNNFIVHIPTG 423
LH N + I +NS + H+ + L I + ++L ++ L +N + IP G
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130
Query: 424 SMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLS-YNRIFRIGHG----LSNCTLI 474
+ L L L N I +I + LR LDL R+ I G LSN +
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN---L 187
Query: 475 KELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534
+ L LA + +I L L+KL LD+S N ++ + ++Q L+ L L IQS
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-----GSFQGLMHLQKLWM-IQS 241
Query: 535 NI 536
I
Sbjct: 242 QI 243
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 179 HSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLW 214
H G+ + S + DRV LKK+S S+I + S RLW
Sbjct: 90 HIGNVDELLSTYPVDRVYLKKYSDSRI--TNSERLW 123
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 427 KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIF----RIGHGLSNCTLIKELYLA 480
K L ++LS N+I+T+ + MT+L L LSYNR+ R GL + ++ L L
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS---LRLLSLH 110
Query: 481 GNKISDI 487
GN IS +
Sbjct: 111 GNDISVV 117
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 33/115 (28%)
Query: 455 DLSYNRIF----RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTK 510
+LS NRIF + L N T L L+GNK+ DI L L KL
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLT---HLNLSGNKLKDISTLEPLKKL-------------- 119
Query: 511 ALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRA 565
+ L +L+L + +N++D R++V LLP+L YL+ + Q A
Sbjct: 120 ---------ECLKSLDLFNCEV-TNLND--YRESVFKLLPQLTYLDGYDREDQEA 162
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 32/146 (21%)
Query: 395 LKAIPT--ISHFSSLRSVNLSNNFIVHIPTGSMPK------------------------- 427
L +PT + S LR + L NN I IP+ + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 428 --GLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKI 484
L LNL + I L + RL L+LS NR+ I G T +++L+L ++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 485 SDIE--GLHRLLKLTVLDMSFNKITT 508
+ IE L L L++S N + +
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMS 240
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 32/144 (22%)
Query: 395 LKAIPT--ISHFSSLRSVNLSNNFIVHIPTGSMPK------------------------- 427
L +PT + S LR + L NN I IP+ + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 428 --GLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKI 484
L LNL + I L + RL L+LS NR+ I G T +++L+L ++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 485 SDIE--GLHRLLKLTVLDMSFNKI 506
+ IE L L L++S N +
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 454 LDLSYNRIFRIGHGLSN-CTLIKELYLAGNKISDIEG--LHRLLKLTVLDMSFNKI 506
LDL N + + +G+ + T + +LYL GNK+ + ++L LT L++S N++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,380,138
Number of Sequences: 62578
Number of extensions: 693790
Number of successful extensions: 1600
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 211
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)