Query 006427
Match_columns 645
No_of_seqs 607 out of 3389
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 6.2E-20 1.3E-24 220.1 15.7 240 347-604 104-353 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.6E-19 3.4E-24 216.6 15.7 231 357-604 137-377 (968)
3 KOG4194 Membrane glycoprotein 99.7 6.2E-19 1.3E-23 193.5 5.6 243 349-603 91-385 (873)
4 KOG4194 Membrane glycoprotein 99.7 4.6E-19 9.9E-24 194.5 3.7 237 345-595 134-404 (873)
5 KOG0444 Cytoskeletal regulator 99.7 2.3E-19 4.9E-24 197.5 -1.8 265 310-605 3-314 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 2.1E-19 4.5E-24 197.8 -3.7 214 350-576 93-338 (1255)
7 PRK15387 E3 ubiquitin-protein 99.6 1E-15 2.2E-20 178.6 12.3 184 383-603 282-465 (788)
8 PF14580 LRR_9: Leucine-rich r 99.6 1.4E-15 3.1E-20 148.8 5.9 153 413-570 5-160 (175)
9 PRK15387 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 168.7 13.3 187 360-576 282-468 (788)
10 KOG0617 Ras suppressor protein 99.5 1.3E-16 2.9E-21 153.6 -4.6 153 383-539 33-191 (264)
11 PRK15370 E3 ubiquitin-protein 99.5 8E-14 1.7E-18 163.1 13.5 163 361-539 221-385 (754)
12 PRK15370 E3 ubiquitin-protein 99.5 4.9E-14 1.1E-18 164.9 11.7 180 360-566 199-380 (754)
13 KOG0472 Leucine-rich repeat pr 99.5 3E-16 6.5E-21 166.8 -6.2 193 351-555 82-302 (565)
14 KOG0472 Leucine-rich repeat pr 99.5 1.1E-16 2.4E-21 170.0 -9.8 220 316-557 36-282 (565)
15 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 147.0 -5.5 178 356-536 29-215 (264)
16 KOG0618 Serine/threonine phosp 99.4 1.9E-14 4.2E-19 165.3 -1.0 41 383-423 241-282 (1081)
17 KOG0618 Serine/threonine phosp 99.4 2.1E-14 4.5E-19 165.0 -3.4 195 353-557 257-483 (1081)
18 PF14580 LRR_9: Leucine-rich r 99.4 3.8E-13 8.3E-18 131.8 4.6 140 389-528 3-148 (175)
19 KOG1259 Nischarin, modulator o 99.4 2.1E-13 4.5E-18 141.0 2.5 210 352-565 206-444 (490)
20 KOG0532 Leucine-rich repeat (L 99.3 3.8E-14 8.1E-19 156.2 -4.1 196 357-560 72-270 (722)
21 cd00116 LRR_RI Leucine-rich re 99.3 2.6E-12 5.6E-17 134.0 8.9 82 427-508 137-235 (319)
22 KOG3207 Beta-tubulin folding c 99.3 1.3E-13 2.8E-18 148.3 -1.6 218 355-575 141-379 (505)
23 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.9E-18 146.6 -2.6 205 341-547 72-373 (498)
24 PLN03210 Resistant to P. syrin 99.3 3.3E-11 7.1E-16 148.2 17.0 193 353-558 551-755 (1153)
25 cd00116 LRR_RI Leucine-rich re 99.3 2.6E-12 5.7E-17 133.9 4.8 205 352-557 73-314 (319)
26 PLN03210 Resistant to P. syrin 99.3 7.3E-11 1.6E-15 145.2 18.1 110 353-465 627-741 (1153)
27 COG4886 Leucine-rich repeat (L 99.3 3.5E-12 7.6E-17 138.4 5.1 182 354-539 110-296 (394)
28 KOG4237 Extracellular matrix p 99.2 6E-13 1.3E-17 141.8 -1.7 67 377-443 61-132 (498)
29 COG4886 Leucine-rich repeat (L 99.1 6.6E-11 1.4E-15 128.5 5.0 184 363-558 96-285 (394)
30 KOG0531 Protein phosphatase 1, 99.0 1.4E-11 3.1E-16 135.5 -2.4 173 358-534 70-246 (414)
31 KOG1859 Leucine-rich repeat pr 99.0 6.7E-12 1.5E-16 141.5 -5.1 205 353-563 102-324 (1096)
32 KOG1259 Nischarin, modulator o 99.0 2.2E-11 4.8E-16 126.2 -0.9 126 383-509 284-414 (490)
33 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.1E-16 136.1 -6.0 161 385-557 77-241 (722)
34 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 128.6 0.2 176 355-534 90-269 (414)
35 KOG3207 Beta-tubulin folding c 98.8 5.3E-10 1.2E-14 120.8 -0.2 182 352-534 113-315 (505)
36 KOG2982 Uncharacterized conser 98.8 1.9E-09 4.2E-14 112.0 2.1 209 359-568 70-297 (418)
37 KOG1909 Ran GTPase-activating 98.7 1.2E-08 2.7E-13 107.9 6.0 235 355-595 25-310 (382)
38 PLN03150 hypothetical protein; 98.7 4.3E-08 9.3E-13 113.7 8.5 107 429-537 420-532 (623)
39 KOG1909 Ran GTPase-activating 98.6 8E-09 1.7E-13 109.3 0.8 180 354-533 86-311 (382)
40 KOG1644 U2-associated snRNP A' 98.6 4.1E-08 8.9E-13 97.5 4.1 141 407-572 21-162 (233)
41 PLN03150 hypothetical protein; 98.5 1.5E-07 3.2E-12 109.3 8.2 88 450-539 419-509 (623)
42 KOG2123 Uncharacterized conser 98.5 1.2E-08 2.5E-13 105.4 -2.8 123 448-573 18-140 (388)
43 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4.1E-12 75.3 3.5 55 429-483 3-60 (61)
44 KOG1859 Leucine-rich repeat pr 98.4 4.1E-09 9E-14 119.4 -8.4 126 361-486 165-293 (1096)
45 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6E-12 74.3 3.9 58 449-506 1-61 (61)
46 KOG1644 U2-associated snRNP A' 98.3 8.4E-07 1.8E-11 88.3 6.0 120 362-481 21-149 (233)
47 COG5238 RNA1 Ran GTPase-activa 98.2 1.3E-06 2.8E-11 90.4 4.6 204 354-557 24-279 (388)
48 KOG4658 Apoptotic ATPase [Sign 98.1 3.9E-06 8.4E-11 100.7 5.6 137 393-531 511-653 (889)
49 KOG2739 Leucine-rich acidic nu 98.0 4.4E-06 9.5E-11 86.0 2.9 74 493-570 90-163 (260)
50 PRK15386 type III secretion pr 97.9 4.7E-05 1E-09 83.9 10.5 135 355-505 47-188 (426)
51 KOG4658 Apoptotic ATPase [Sign 97.9 7.5E-06 1.6E-10 98.3 4.3 146 383-528 523-676 (889)
52 KOG4579 Leucine-rich repeat (L 97.9 9.2E-07 2E-11 83.5 -2.7 103 428-533 28-136 (177)
53 KOG4579 Leucine-rich repeat (L 97.9 4.4E-07 9.5E-12 85.6 -5.5 109 428-539 54-165 (177)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 60.9 3.4 37 450-486 2-38 (44)
55 KOG2120 SCF ubiquitin ligase, 97.7 8.6E-07 1.9E-11 92.6 -7.1 172 383-560 185-373 (419)
56 PRK15386 type III secretion pr 97.7 0.00014 3E-09 80.3 9.4 112 361-483 73-188 (426)
57 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 58.1 3.4 39 427-465 1-40 (44)
58 KOG2982 Uncharacterized conser 97.5 3.4E-05 7.4E-10 80.9 1.0 177 352-528 89-287 (418)
59 COG5238 RNA1 Ran GTPase-activa 97.4 3.4E-05 7.4E-10 80.1 0.0 133 354-486 86-256 (388)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00026 5.7E-09 83.3 5.8 128 427-557 122-257 (699)
61 KOG2120 SCF ubiquitin ligase, 97.1 4.1E-05 8.9E-10 80.4 -3.2 186 361-553 186-390 (419)
62 KOG3665 ZYG-1-like serine/thre 97.1 0.00035 7.6E-09 82.2 4.0 126 383-508 122-264 (699)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0028 6E-08 57.4 7.7 114 401-522 8-128 (129)
64 KOG2123 Uncharacterized conser 96.9 3.7E-05 8E-10 80.1 -5.6 78 384-461 20-100 (388)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 70.2 2.0 52 449-500 91-149 (260)
66 PF13306 LRR_5: Leucine rich r 96.3 0.016 3.5E-07 52.4 7.6 107 384-496 13-128 (129)
67 KOG4308 LRR-containing protein 94.0 0.0011 2.3E-08 75.0 -9.2 87 448-534 203-304 (478)
68 PF00560 LRR_1: Leucine Rich R 93.9 0.035 7.5E-07 36.0 1.5 21 450-470 1-21 (22)
69 KOG3763 mRNA export factor TAP 93.6 0.048 1E-06 61.8 3.1 92 469-562 215-313 (585)
70 KOG4308 LRR-containing protein 93.5 0.0014 3E-08 74.2 -9.4 171 385-557 89-297 (478)
71 KOG0473 Leucine-rich repeat pr 90.7 0.0057 1.2E-07 62.7 -7.8 85 445-532 38-123 (326)
72 KOG0473 Leucine-rich repeat pr 90.5 0.0075 1.6E-07 61.9 -7.3 90 395-484 30-123 (326)
73 PF13504 LRR_7: Leucine rich r 89.1 0.24 5.3E-06 30.2 1.4 16 450-465 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 87.2 0.25 5.4E-06 31.9 0.6 15 407-421 2-16 (22)
75 smart00369 LRR_TYP Leucine-ric 85.8 0.54 1.2E-05 31.3 1.7 22 404-425 1-22 (26)
76 smart00370 LRR Leucine-rich re 85.8 0.54 1.2E-05 31.3 1.7 22 404-425 1-22 (26)
77 PF13504 LRR_7: Leucine rich r 85.4 0.57 1.2E-05 28.6 1.5 15 406-420 2-16 (17)
78 KOG1947 Leucine rich repeat pr 84.5 0.26 5.7E-06 54.1 -0.4 79 448-526 242-327 (482)
79 KOG1947 Leucine rich repeat pr 83.7 0.8 1.7E-05 50.3 2.9 127 427-558 188-329 (482)
80 smart00369 LRR_TYP Leucine-ric 81.2 1.1 2.3E-05 29.8 1.7 20 448-467 1-20 (26)
81 smart00370 LRR Leucine-rich re 81.2 1.1 2.3E-05 29.8 1.7 20 448-467 1-20 (26)
82 KOG3864 Uncharacterized conser 71.0 2.7 5.9E-05 42.7 2.2 78 450-529 102-185 (221)
83 TIGR00864 PCC polycystin catio 71.0 4.1 8.8E-05 54.6 4.2 47 500-548 1-47 (2740)
84 KOG3763 mRNA export factor TAP 66.3 3.3 7.2E-05 47.5 1.8 59 450-508 219-284 (585)
85 KOG3864 Uncharacterized conser 65.2 1.4 3E-05 44.7 -1.2 76 427-503 101-185 (221)
86 smart00365 LRR_SD22 Leucine-ri 59.7 7.1 0.00015 26.6 1.8 16 494-509 2-17 (26)
87 smart00364 LRR_BAC Leucine-ric 58.1 6.1 0.00013 27.1 1.3 17 450-466 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 57.7 8.2 0.00018 26.4 1.9 17 472-488 2-18 (26)
89 KOG4341 F-box protein containi 55.6 4.4 9.6E-05 45.2 0.5 154 403-561 266-437 (483)
90 KOG4341 F-box protein containi 48.8 11 0.00024 42.3 2.1 151 402-557 291-459 (483)
91 PF13516 LRR_6: Leucine Rich r 48.5 11 0.00023 24.5 1.3 14 449-462 2-15 (24)
92 smart00368 LRR_RI Leucine rich 34.1 29 0.00063 23.7 1.7 13 450-462 3-15 (28)
93 smart00446 LRRcap occurring C- 30.3 30 0.00066 23.8 1.2 19 540-558 3-21 (26)
94 KOG4242 Predicted myosin-I-bin 26.2 67 0.0015 36.8 3.7 13 496-508 356-368 (553)
95 PF05725 FNIP: FNIP Repeat; I 26.0 87 0.0019 23.5 3.3 31 405-435 12-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=6.2e-20 Score=220.12 Aligned_cols=240 Identities=20% Similarity=0.221 Sum_probs=188.1
Q ss_pred CCCCCChhhhh-cccCCCEEecCCccccccchhhccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCC
Q 006427 347 ETGKSPARSTA-HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTG 423 (645)
Q Consensus 347 ~l~~~~~~sl~-~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~ 423 (645)
.+.+.+|..+. .+.+|+.|+|++|.+.+..+. ...++|++|+|++|.++ .+| .++.+++|++|+|++|.+.+..+.
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 34434444444 888888888888887654333 23478889999999887 566 588889999999999988765444
Q ss_pred CCC--CCCCEEecCCCCCCCC-c-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCC
Q 006427 424 SMP--KGLHTLNLSRNKINTI-E-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKL 496 (645)
Q Consensus 424 ~~~--~sL~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L 496 (645)
.+. ++|++|+|++|.+.+. | .++.+++|++|+|++|.++ .+|..++++++|++|+|++|.+++. ..+..+++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 443 7899999999988753 3 4888899999999999888 6777788999999999999988764 568888999
Q ss_pred CEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHH
Q 006427 497 TVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 497 ~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~ 576 (645)
+.|+|++|.+++. +|..+..+++|+.|+|++|.+.+.+|.. +..+++|++|+. ..|.+.+.+|..+..
T Consensus 263 ~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~l---~~n~~~~~~~~~~~~- 330 (968)
T PLN00113 263 QYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPEL------VIQLQNLEILHL---FSNNFTGKIPVALTS- 330 (968)
T ss_pred CEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCChh------HcCCCCCcEEEC---CCCccCCcCChhHhc-
Confidence 9999999998875 7788889999999999999998888875 677888888875 567777777776654
Q ss_pred HhcCCCCccccccccccCCccCccCCCC
Q 006427 577 VLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 577 ~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
...+..+.+..|.+.|.+|...+
T Consensus 331 -----l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 331 -----LPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred -----CCCCCEEECcCCCCcCcCChHHh
Confidence 25677889999999999887553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.6e-19 Score=216.62 Aligned_cols=231 Identities=25% Similarity=0.321 Sum_probs=183.4
Q ss_pred hcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCE
Q 006427 357 AHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHT 431 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~ 431 (645)
..+.+|+.|+|++|.+.+..+. ..-.++|++|+|++|.+. .+| .++++++|++|+|++|.+.+..+..+. ++|+.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4578899999999988643221 222378999999999887 566 688899999999999998865444333 78999
Q ss_pred EecCCCCCCC-Cc-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCC
Q 006427 432 LNLSRNKINT-IE-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 432 LdLs~N~Ls~-lp-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~L 506 (645)
|+|++|.+++ ++ .++.+++|++|+|++|.++ .+|..++++++|+.|+|++|.+++. ..+..+.+|+.|+|++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 9999998885 34 4888999999999999887 6777788999999999999988764 4678888999999999998
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccc
Q 006427 507 TTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQ 586 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~ 586 (645)
.+. +|..+..+++|+.|+|++|.+.+.+|.. +..+++|+.|+. ..|.+.+.+|..+.. ...+.
T Consensus 297 ~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~~------~~~l~~L~~L~L---~~n~l~~~~p~~l~~------~~~L~ 359 (968)
T PLN00113 297 SGE--IPELVIQLQNLEILHLFSNNFTGKIPVA------LTSLPRLQVLQL---WSNKFSGEIPKNLGK------HNNLT 359 (968)
T ss_pred ccC--CChhHcCCCCCcEEECCCCccCCcCChh------HhcCCCCCEEEC---cCCCCcCcCChHHhC------CCCCc
Confidence 875 7888889999999999999998888765 677888888876 566677777776654 25677
Q ss_pred cccccccCCccCccCCCC
Q 006427 587 RKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 587 ~~~l~~n~lSG~iPss~~ 604 (645)
.+.++.|.++|.+|....
T Consensus 360 ~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred EEECCCCeeEeeCChhHh
Confidence 888999999988886653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6.2e-19 Score=193.46 Aligned_cols=243 Identities=23% Similarity=0.278 Sum_probs=151.3
Q ss_pred CCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC
Q 006427 349 GKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP 426 (645)
Q Consensus 349 ~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~ 426 (645)
...-+..+.++++|+.++|..|.++.++.+.....+|+.|+|.+|.|+.+. .+..++.|+.|||+.|.|+.|+...|+
T Consensus 91 ~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 91 SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 334455677777778888887777777766666677777777777777776 477777777777777777777777776
Q ss_pred --CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--------------
Q 006427 427 --KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI-------------- 487 (645)
Q Consensus 427 --~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l-------------- 487 (645)
.+|++|+|++|.|+.+. .|..+.+|.+|.|+.|+|+.+|.. |.++++|+.|+|..|+|.-+
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 57777777777777663 366777777777777777777654 55567777777766655422
Q ss_pred ------------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCcee
Q 006427 488 ------------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYL 555 (645)
Q Consensus 488 ------------~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~L 555 (645)
..|..|.++++|+|..|+++.... .++-+++.|+.|+|++|.|...-++. +.-.++|+.|
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~d~------WsftqkL~~L 322 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQRIHIDS------WSFTQKLKEL 322 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhhhheeecch------hhhcccceeE
Confidence 113334455555666665554422 44455555555555555554422222 3334555555
Q ss_pred cccCCChhhhhhhhh-------------------HHHHHHHhcCCCCccccccccccCCccCccCCC
Q 006427 556 NKQPIKPQRARELLT-------------------DSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSN 603 (645)
Q Consensus 556 d~~~Is~n~~~g~i~-------------------~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~ 603 (645)
|+. .|++...-+ +.+.+.++.. ..++..+++++|.+++.|....
T Consensus 323 dLs---~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 323 DLS---SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred ecc---ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeEEEEEecch
Confidence 542 222221111 1223333322 3677888999999999987644
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=4.6e-19 Score=194.48 Aligned_cols=237 Identities=22% Similarity=0.263 Sum_probs=157.8
Q ss_pred CCCCCCCChhhhhcccCCCEEecCCccccccchhhccC-CCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCC
Q 006427 345 SPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLN-SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 345 ~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~-~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip 421 (645)
..-+...-...+..++.|+.||||.|.+..+.....-. .+++.|+|++|.|+.+. .|..|.+|..|.|++|+|+.+|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 33444455678888999999999999988776554444 78999999999999876 6888889999999999999999
Q ss_pred CCCCC--CCCCEEecCCCCCCCCc--CCCCCC------------------------CCcEEEccCCccccccCc-CcCCC
Q 006427 422 TGSMP--KGLHTLNLSRNKINTIE--GLREMT------------------------RLRVLDLSYNRIFRIGHG-LSNCT 472 (645)
Q Consensus 422 ~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~------------------------sL~~LdLS~N~Ls~LP~~-l~~L~ 472 (645)
...|. ++|+.|+|..|+|..+. .|.+|. ++++|+|..|+++.+..+ +.+++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 88776 78888999888876542 244444 455555555555544333 44555
Q ss_pred CCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC
Q 006427 473 LIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP 550 (645)
Q Consensus 473 sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~ 550 (645)
.|+.|+|++|.|..+ ..+..+++|++|+|++|+|+.+++ ..|..+..|+.|+|++|.|. .+.+..+..+.
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~Le~LnLs~Nsi~------~l~e~af~~ls 365 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQLEELNLSHNSID------HLAEGAFVGLS 365 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCCh--hHHHHHHHhhhhcccccchH------HHHhhHHHHhh
Confidence 555555555555554 445555566666666666655532 45555556666666666554 34455566678
Q ss_pred CCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCC
Q 006427 551 KLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGR 595 (645)
Q Consensus 551 ~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~l 595 (645)
+|+.||+ ..|++...|.+. ..++.. ..++.++.+.+|++
T Consensus 366 sL~~LdL---r~N~ls~~IEDa--a~~f~g-l~~LrkL~l~gNql 404 (873)
T KOG4194|consen 366 SLHKLDL---RSNELSWCIEDA--AVAFNG-LPSLRKLRLTGNQL 404 (873)
T ss_pred hhhhhcC---cCCeEEEEEecc--hhhhcc-chhhhheeecCcee
Confidence 8888876 677887777762 223332 34555666666665
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=2.3e-19 Score=197.46 Aligned_cols=265 Identities=23% Similarity=0.280 Sum_probs=188.0
Q ss_pred CCCCCcchhhhhhcccCCCCCcCCcccccccccCCCC-------------CCCCCChhhhhcccCCCEEecCCccccccc
Q 006427 310 AESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSP-------------ETGKSPARSTAHLTRRSEINLSEEILHANS 376 (645)
Q Consensus 310 ~~s~p~~~v~~Wv~~l~~~~~~ed~~~~~~l~~~~~~-------------~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~ 376 (645)
.+.+|| |+++++. +++|.+-.||..- .....+|..++.+.+|.+|.+++|.+...-
T Consensus 3 tgVLpF------VrGvDfs-----gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh 71 (1255)
T KOG0444|consen 3 TGVLPF------VRGVDFS-----GNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH 71 (1255)
T ss_pred ccccce------eeccccc-----CCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh
Confidence 556777 8888888 5555555554311 112245889999999999999999887543
Q ss_pred hhhccCCCccEEEecCCCCC--cCC-CCCCCCCCCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcC--CCCCCC
Q 006427 377 VIRSLNSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEG--LREMTR 450 (645)
Q Consensus 377 ~l~~L~~~L~~L~Ls~N~Lt--~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~--L~~L~s 450 (645)
.-..-.+.|+.+.+..|+|+ .|| .+-.|..|..|||++|+++..|... ..+++..|+|++|+|..||. +-+|+.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 33333378888999999997 677 7889999999999999999888663 34889999999999999975 778999
Q ss_pred CcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--c-------------------------cccCCCCCCEEECcC
Q 006427 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--E-------------------------GLHRLLKLTVLDMSF 503 (645)
Q Consensus 451 L~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~-------------------------~l~~L~~L~~LdLS~ 503 (645)
|-+|||++|++..+|+.+..+..|+.|.|++|.|... . ++..+.+|..+||+.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 9999999999999999999999999999999976432 2 233445666667777
Q ss_pred CCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCC
Q 006427 504 NKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQ 583 (645)
Q Consensus 504 N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~ 583 (645)
|.+.. +|.++-++.+|+.|+|++|.|+. +... .+...+|+.||+ +.|++ ..+|+.+++. .
T Consensus 232 N~Lp~---vPecly~l~~LrrLNLS~N~ite-L~~~------~~~W~~lEtLNl---SrNQL-t~LP~avcKL------~ 291 (1255)
T KOG0444|consen 232 NNLPI---VPECLYKLRNLRRLNLSGNKITE-LNMT------EGEWENLETLNL---SRNQL-TVLPDAVCKL------T 291 (1255)
T ss_pred cCCCc---chHHHhhhhhhheeccCcCceee-eecc------HHHHhhhhhhcc---ccchh-ccchHHHhhh------H
Confidence 76665 66677777777777777777654 2211 223345555554 44443 3577778775 3
Q ss_pred ccccccccccCCc-cCccCCCCC
Q 006427 584 SSQRKAVKRTGRS-GSLPSSNQR 605 (645)
Q Consensus 584 sl~~~~l~~n~lS-G~iPss~~~ 605 (645)
.+..+.+..|.+. -.|||.+|.
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred HHHHHHhccCcccccCCccchhh
Confidence 4445555554443 238888864
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=2.1e-19 Score=197.77 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=162.2
Q ss_pred CCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC--CCCCCCCCEEEccCCcCCCCCCCCCC-
Q 006427 350 KSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT--ISHFSSLRSVNLSNNFIVHIPTGSMP- 426 (645)
Q Consensus 350 ~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs--L~~L~~L~~LdLs~N~Lt~ip~~~~~- 426 (645)
.-+|..+.+|..|+.||||+|++...+.-..-..++-+|+|++|+|..||. +-+|..|-.|||++|++..+|+..-.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 345778899999999999999998766555555888899999999999993 67899999999999999998886433
Q ss_pred CCCCEEecCCCCCCC--------------------------Cc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEc
Q 006427 427 KGLHTLNLSRNKINT--------------------------IE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYL 479 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~--------------------------lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~L 479 (645)
.+|++|.|++|.|.. +| .+..|.+|..+||+.|.+..+|..+.++.+|+.|+|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheecc
Confidence 678888888887642 11 244566777788888888888877888888888888
Q ss_pred cCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCC-cCCChhHHHHHHhcCCCCCceecc
Q 006427 480 AGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQ-SNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 480 s~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~-g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
++|+|+.+ -..+...+|++|+|+.|+++. +|..++.++.|+.|.+.+|.++ ..||.. ++.|.+|+.+..
T Consensus 253 S~N~iteL~~~~~~W~~lEtLNlSrNQLt~---LP~avcKL~kL~kLy~n~NkL~FeGiPSG------IGKL~~Levf~a 323 (1255)
T KOG0444|consen 253 SGNKITELNMTEGEWENLETLNLSRNQLTV---LPDAVCKLTKLTKLYANNNKLTFEGIPSG------IGKLIQLEVFHA 323 (1255)
T ss_pred CcCceeeeeccHHHHhhhhhhccccchhcc---chHHHhhhHHHHHHHhccCcccccCCccc------hhhhhhhHHHHh
Confidence 88888877 345556678888888888877 7788888888888888888764 236666 666666665543
Q ss_pred cCCChhhhhhhhhHHHHHH
Q 006427 558 QPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 558 ~~Is~n~~~g~i~~~i~~~ 576 (645)
.|..-+..|+.++++
T Consensus 324 ----anN~LElVPEglcRC 338 (1255)
T KOG0444|consen 324 ----ANNKLELVPEGLCRC 338 (1255)
T ss_pred ----hccccccCchhhhhh
Confidence 233455666667665
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1e-15 Score=178.60 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=105.4
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccc
Q 006427 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls 462 (645)
.+|+.|+|++|+|+.+|.+ +++|+.|+|++|.|+.++. ++.+|+.|++++|.|+.+|.+ ..+|+.|+|++|+|+
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLA 355 (788)
T ss_pred hhcCEEECcCCcccccccc--ccccceeECCCCccccCCC--CcccccccccccCcccccccc--ccccceEecCCCccC
Confidence 3444455555555554431 3456666666666655543 234455555555555555432 136777777777777
Q ss_pred cccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHH
Q 006427 463 RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLR 542 (645)
Q Consensus 463 ~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~ 542 (645)
.+|... .+|+.|++++|+|+.++.+ +.+|+.|+|++|.|+.+ |.. ..+|+.|+|++|.|.+ +|..
T Consensus 356 ~LP~lp---~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~L---P~l---~s~L~~LdLS~N~Lss-IP~l--- 420 (788)
T PRK15387 356 SLPTLP---SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSL---PVL---PSELKELMVSGNRLTS-LPML--- 420 (788)
T ss_pred CCCCCC---cccceehhhccccccCccc--ccccceEEecCCcccCC---CCc---ccCCCEEEccCCcCCC-CCcc---
Confidence 666432 3566667777777666433 24677777777777763 322 2467777777777765 5532
Q ss_pred HHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCccCCC
Q 006427 543 KAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSN 603 (645)
Q Consensus 543 ~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~ 603 (645)
+.+|+.|+. ..|.++ .+|..+... ..+..+.++.|.|+|.+|.+.
T Consensus 421 ------~~~L~~L~L---s~NqLt-~LP~sl~~L------~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 ------PSGLLSLSV---YRNQLT-RLPESLIHL------SSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ------hhhhhhhhh---ccCccc-ccChHHhhc------cCCCeEECCCCCCCchHHHHH
Confidence 234455543 445554 356555542 455667778888887766543
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.58 E-value=1.4e-15 Score=148.79 Aligned_cols=153 Identities=37% Similarity=0.488 Sum_probs=61.3
Q ss_pred cCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCCC-CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccc
Q 006427 413 SNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLR-EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGL 490 (645)
Q Consensus 413 s~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L~-~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l 490 (645)
..+.|..++...-+..++.|+|.+|.|+.++.++ .+.+|+.|+|++|.|+.|. .+..++.|+.|+|++|.|+.+ +.+
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 3444444444333445666666666666666665 4667777777777777664 566677777777777777776 334
Q ss_pred -cCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhh
Q 006427 491 -HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELL 569 (645)
Q Consensus 491 -~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i 569 (645)
..+++|+.|+|++|+|..+..+ ..+..+++|+.|+|.+||++.. ..|+.+++..+|+|+.||...|+..++..+.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~ 159 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDGQDVTEEERQEAE 159 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETTEETTS-B-----
T ss_pred HHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCCEEccHHHhcccc
Confidence 3567788888888887776554 4467899999999999999753 4799999999999999999999988877654
Q ss_pred h
Q 006427 570 T 570 (645)
Q Consensus 570 ~ 570 (645)
.
T Consensus 160 ~ 160 (175)
T PF14580_consen 160 K 160 (175)
T ss_dssp -
T ss_pred c
Confidence 4
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.6e-14 Score=168.68 Aligned_cols=187 Identities=22% Similarity=0.267 Sum_probs=133.2
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006427 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
..|+.|+|++|.+..++. ..++|+.|+|++|+|+.+|.+ ...|+.|++++|.|+.+|. ++.+|+.|+|++|+|
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQL 354 (788)
T ss_pred hhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccc--cccccceEecCCCcc
Confidence 456777888887775433 346788888888888888753 2457788888888887764 446788888888888
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcC
Q 006427 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANY 519 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L 519 (645)
+.+|.+ ..+|+.|++++|.|+.||... .+|+.|+|++|.|+.++.+ ..+|+.|+|++|.|+.+ |.. .
T Consensus 355 s~LP~l--p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssI---P~l---~ 421 (788)
T PRK15387 355 ASLPTL--PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSL---PML---P 421 (788)
T ss_pred CCCCCC--CcccceehhhccccccCcccc---cccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCC---Ccc---h
Confidence 887754 356778888888888777532 4678888888888876543 35788888888888774 332 2
Q ss_pred CCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHH
Q 006427 520 QSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 520 ~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~ 576 (645)
.+|+.|+|++|.|+ .+|.. +..+++|..|++ ..|.+.+.++..+...
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~s------l~~L~~L~~LdL---s~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPES------LIHLSSETTVNL---EGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhhccCccc-ccChH------HhhccCCCeEEC---CCCCCCchHHHHHHHH
Confidence 35677888888887 37765 556777777764 6777777777766443
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-16 Score=153.61 Aligned_cols=153 Identities=26% Similarity=0.439 Sum_probs=130.9
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCC
Q 006427 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYN 459 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N 459 (645)
.+++.|.|++|+|+.+| .+..+.+|++|++.+|+|+.+|...-. +.|+.|+++-|++..+| +|+.++.|++|||++|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 45667888889998877 788899999999999999988876433 78899999999888876 5999999999999999
Q ss_pred ccc--cccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCC
Q 006427 460 RIF--RIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNI 536 (645)
Q Consensus 460 ~Ls--~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~i 536 (645)
++. .+|..|..++.|+.|+|+.|.+.-+ +.++.+++|+.|.+..|.+.. +|..++.++.|++|++.+|+++- +
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgnrl~v-l 188 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNRLTV-L 188 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccceeee-c
Confidence 988 6888888889999999999999887 678999999999999998877 78889999999999999999975 6
Q ss_pred Chh
Q 006427 537 SDD 539 (645)
Q Consensus 537 P~~ 539 (645)
|.+
T Consensus 189 ppe 191 (264)
T KOG0617|consen 189 PPE 191 (264)
T ss_pred Chh
Confidence 665
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=8e-14 Score=163.14 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=90.5
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
+|+.|+|++|.+..++. .+..+|+.|+|++|+|+.+| .+. .+|+.|+|++|+|+.+|.. ++.+|+.|+|++|+|
T Consensus 221 nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 221 NIKTLYANSNQLTSIPA--TLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPEN-LPEELRYLSVYDNSI 295 (754)
T ss_pred CCCEEECCCCccccCCh--hhhccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccc-cCCCCcEEECCCCcc
Confidence 55556666555554321 22345556666666666555 222 3566666666666655432 234566666666666
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCccc-ccCCCCCCEEECcCCCCCCccchhHhhhc
Q 006427 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEG-LHRLLKLTVLDMSFNKITTTKALGQLVAN 518 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~-l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~ 518 (645)
+.+|.. -..+|+.|+|++|.|+.+|..+. ++|+.|++++|.|+.++. + +++|+.|+|++|+|+. +|..+
T Consensus 296 t~LP~~-lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~---LP~~l-- 365 (754)
T PRK15370 296 RTLPAH-LPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV---LPETL-- 365 (754)
T ss_pred ccCccc-chhhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCc---CChhh--
Confidence 655431 01345556666666655554332 466667777776666532 2 2567777777777765 34433
Q ss_pred CCCCcEEEccCCCCCcCCChh
Q 006427 519 YQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 519 L~sL~~LdLs~N~L~g~iP~~ 539 (645)
.++|+.|+|++|.|+. +|..
T Consensus 366 p~~L~~LdLs~N~Lt~-LP~~ 385 (754)
T PRK15370 366 PPTITTLDVSRNALTN-LPEN 385 (754)
T ss_pred cCCcCEEECCCCcCCC-CCHh
Confidence 2567777777777764 5543
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.9e-14 Score=164.90 Aligned_cols=180 Identities=22% Similarity=0.285 Sum_probs=142.6
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC
Q 006427 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~ 438 (645)
..|+.|+|++|.+..++. .+..+|+.|+|++|+|+.+|. + ..+|+.|+|++|.|..+|.. ++.+|+.|+|++|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~ 273 (754)
T PRK15370 199 EQITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFHNK 273 (754)
T ss_pred cCCcEEEecCCCCCcCCh--hhccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcCCc
Confidence 478999999999886543 334689999999999999983 4 35799999999999988754 45789999999999
Q ss_pred CCCCcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhh
Q 006427 439 INTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517 (645)
Q Consensus 439 Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~ 517 (645)
|+.+|. +. .+|+.|+|++|+|+.+|..+. .+|+.|+|++|.|+.++.. ...+|+.|++++|.|+. +|..+
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~---LP~~l- 344 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTS---LPASL- 344 (754)
T ss_pred cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCcccc---CChhh-
Confidence 998875 32 589999999999999886553 4799999999999987431 23689999999999988 45544
Q ss_pred cCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhh
Q 006427 518 NYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAR 566 (645)
Q Consensus 518 ~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~ 566 (645)
.++|+.|+|++|+|.. +|.. + .++|+.|+.. .|.+.
T Consensus 345 -~~sL~~L~Ls~N~L~~-LP~~------l--p~~L~~LdLs---~N~Lt 380 (754)
T PRK15370 345 -PPELQVLDVSKNQITV-LPET------L--PPTITTLDVS---RNALT 380 (754)
T ss_pred -cCcccEEECCCCCCCc-CChh------h--cCCcCEEECC---CCcCC
Confidence 3799999999999985 6654 1 3578888763 44444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=3e-16 Score=166.76 Aligned_cols=193 Identities=26% Similarity=0.331 Sum_probs=126.5
Q ss_pred CChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CC
Q 006427 351 SPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KG 428 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~s 428 (645)
..|..++.+..+..++.+.|.+..++.-..-..++..|+++.|.+..+| +++.+..|..|+..+|+++.+|.+.+. .+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 3466788888888888888887766555555567778888888888777 678888888888888888877765432 44
Q ss_pred CCEEecCCCCCCC-----------------------Cc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCC
Q 006427 429 LHTLNLSRNKINT-----------------------IE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKI 484 (645)
Q Consensus 429 L~~LdLs~N~Ls~-----------------------lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~L 484 (645)
|..|++.+|++.. +| .++.+.+|..|+|..|.|..+| .|..|..|.+|+++.|+|
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH
Confidence 5555555555544 32 2444555555555555555554 444555555555555555
Q ss_pred CCcc--cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCcee
Q 006427 485 SDIE--GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYL 555 (645)
Q Consensus 485 s~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~L 555 (645)
..++ -...+..|.+|||..|+++. +|..+..+.+|..||+++|.|++ +|.. ++++ +|+.|
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNklke---~Pde~clLrsL~rLDlSNN~is~-Lp~s------Lgnl-hL~~L 302 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNKLKE---VPDEICLLRSLERLDLSNNDISS-LPYS------LGNL-HLKFL 302 (565)
T ss_pred HhhHHHHhcccccceeeecccccccc---CchHHHHhhhhhhhcccCCcccc-CCcc------cccc-eeeeh
Confidence 4442 23466777777888887776 67777777788888888888876 6665 5555 55544
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.1e-16 Score=170.01 Aligned_cols=220 Identities=20% Similarity=0.276 Sum_probs=155.7
Q ss_pred chhhhhhcccCCCCCcCCcccccccccCCCCCCCCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCC
Q 006427 316 KRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGL 395 (645)
Q Consensus 316 ~~v~~Wv~~l~~~~~~ed~~~~~~l~~~~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~L 395 (645)
..-++|+..+++.. ++. ....+ ..+...+.+|..|..+++.+|.+...+....-...+..|+.+.|++
T Consensus 36 ~e~e~wW~qv~l~~----------lil-s~N~l-~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l 103 (565)
T KOG0472|consen 36 GEGENWWEQVDLQK----------LIL-SHNDL-EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL 103 (565)
T ss_pred cchhhhhhhcchhh----------hhh-ccCch-hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH
Confidence 34567877777661 111 22222 2334577888999999999998887655444446677899999999
Q ss_pred CcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCcC-CCCCC-----------------------
Q 006427 396 KAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMT----------------------- 449 (645)
Q Consensus 396 t~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp~-L~~L~----------------------- 449 (645)
..+| .++.+..|..|++++|.+..++++.+. ..|..|+..+|+|+.+|+ +..+.
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~ 183 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK 183 (565)
T ss_pred hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHH
Confidence 9999 799999999999999999999887654 789999999999998753 44443
Q ss_pred CCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhh-hcCCCCcEEEcc
Q 006427 450 RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLV-ANYQSLLALNLL 528 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l-~~L~sL~~LdLs 528 (645)
.|+.||+..|-++.+|+.++.+.+|..|+|.+|+|..++.|..|..|..|+++.|.|.. +|... .++++|.+|||.
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~---lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM---LPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh---hHHHHhcccccceeeecc
Confidence 45556666666666666666666666666666666666666666666666666666665 34433 377777777777
Q ss_pred CCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 529 GNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 529 ~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
.|++.. +|++ +..+.+|.+||.
T Consensus 261 dNklke-~Pde------~clLrsL~rLDl 282 (565)
T KOG0472|consen 261 DNKLKE-VPDE------ICLLRSLERLDL 282 (565)
T ss_pred cccccc-CchH------HHHhhhhhhhcc
Confidence 777765 6666 555666666665
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-15 Score=146.99 Aligned_cols=178 Identities=23% Similarity=0.288 Sum_probs=149.8
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEe
Q 006427 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLN 433 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~Ld 433 (645)
+.++..++.|.||+|.+...++-..-..+|++|++++|+|+.+| +++.++.|+.|++..|++.-+|.+... +.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44566778889999998866554434478999999999999999 799999999999999999988877544 7899999
Q ss_pred cCCCCCCC--CcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCc
Q 006427 434 LSRNKINT--IEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 434 Ls~N~Ls~--lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|.+|.+.+ +|+ |..++.|+.|.|++|.|.-+|..++++++|+.|.+..|.+-.+ ..++.+..|+.|.+.+|+++-
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v- 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV- 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-
Confidence 99999985 464 8889999999999999999999999999999999999998877 569999999999999999987
Q ss_pred cchhHhhhcCCC---CcEEEccCCCCCcCC
Q 006427 510 KALGQLVANYQS---LLALNLLGNPIQSNI 536 (645)
Q Consensus 510 ~~LP~~l~~L~s---L~~LdLs~N~L~g~i 536 (645)
+|..++++.- -+.+.+..|++...|
T Consensus 188 --lppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 188 --LPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred --cChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6777766542 245667778776544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-14 Score=165.34 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCC
Q 006427 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTG 423 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~ 423 (645)
.+|++++++.|+++.+| .++.+.+|+.|++.+|+|+.++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r 282 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR 282 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH
Confidence 45666666666666666 455666666666666666555443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=2.1e-14 Score=165.05 Aligned_cols=195 Identities=25% Similarity=0.311 Sum_probs=146.6
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-----
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP----- 426 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~----- 426 (645)
|..+..+.+|+.+++..|.+..++.-.....+|+.|.+..|.+..+| .+..++.|++|+|..|+|..+|...+.
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 46777777777777777777655444444466777777777777776 355578888888888887776653221
Q ss_pred ----------------------CCCCEEecCCCCCCC--CcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccC
Q 006427 427 ----------------------KGLHTLNLSRNKINT--IEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAG 481 (645)
Q Consensus 427 ----------------------~sL~~LdLs~N~Ls~--lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~ 481 (645)
..|+.|+|.+|.|++ +|.|.++.+|++|+|++|+|..+|.. +.++..|++|+|++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 346778888888875 47788889999999999999999876 88889999999999
Q ss_pred CCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 482 NKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 482 N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
|+|+.+ ..+..+..|++|...+|+|.. +| .+..++.|+.+||+.|.|+...-.+ ...-++|+|||+
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~---fP-e~~~l~qL~~lDlS~N~L~~~~l~~------~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQLLS---FP-ELAQLPQLKVLDLSCNNLSEVTLPE------ALPSPNLKYLDL 483 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCceee---ch-hhhhcCcceEEecccchhhhhhhhh------hCCCcccceeec
Confidence 999988 557888889999999999887 55 5788999999999999887532221 111278999987
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.36 E-value=3.8e-13 Score=131.76 Aligned_cols=140 Identities=36% Similarity=0.453 Sum_probs=57.1
Q ss_pred EecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCc
Q 006427 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 389 ~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~ 467 (645)
.|..+.|..++.+.+...+++|+|.+|.|+.|..-. ...+|+.|+|++|.|+.++.+..++.|++|+|++|+|+.+...
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 355667777887778888999999999999886544 3478999999999999999999999999999999999998655
Q ss_pred C-cCCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCccc-hhHhhhcCCCCcEEEcc
Q 006427 468 L-SNCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTTKA-LGQLVANYQSLLALNLL 528 (645)
Q Consensus 468 l-~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~-LP~~l~~L~sL~~LdLs 528 (645)
+ ..+++|++|+|++|+|..+ ..+..+++|+.|+|.+|.++.... -...+..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5 4689999999999999876 567889999999999999986432 12457889999998843
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=2.1e-13 Score=141.00 Aligned_cols=210 Identities=26% Similarity=0.331 Sum_probs=161.5
Q ss_pred ChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-------------------------CCCCCC
Q 006427 352 PARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-------------------------ISHFSS 406 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-------------------------L~~L~~ 406 (645)
++-.+..+.+|..+.+|......+..+..+.|.|.++...+..+...|. +.....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 3445666777888888877666666666666778777766554443221 223567
Q ss_pred CCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCC
Q 006427 407 LRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls 485 (645)
|+.|||++|.|+.|.... +.+.++.|++++|.|..+..+..+++|+.|||++|.++.+-..-..+.+++.|.|++|.|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 999999999999887653 4489999999999999998899999999999999999988655557789999999999999
Q ss_pred CcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHh---cCCCCCceecccCCCh
Q 006427 486 DIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVC---SLLPKLVYLNKQPIKP 562 (645)
Q Consensus 486 ~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl---~~L~~L~~Ld~~~Is~ 562 (645)
.+.++..+-+|..||+++|+|...+++ ..|++++-|+.|.|.+|++.+ ++ .|+-.++ +.-.+=-.||...-..
T Consensus 366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~-~v--dYRTKVLa~FGERaSE~~LD~~~~~~ 441 (490)
T KOG1259|consen 366 TLSGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAG-SV--DYRTKVLARFGERASEISLDNEPGNQ 441 (490)
T ss_pred hhhhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccc-cc--hHHHHHHHHHhhhhhheecCCCCcch
Confidence 999999999999999999999987654 668999999999999999998 44 3443333 3333334677654444
Q ss_pred hhh
Q 006427 563 QRA 565 (645)
Q Consensus 563 n~~ 565 (645)
.++
T Consensus 442 ~EL 444 (490)
T KOG1259|consen 442 QEL 444 (490)
T ss_pred hhh
Confidence 444
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.8e-14 Score=156.19 Aligned_cols=196 Identities=27% Similarity=0.305 Sum_probs=167.3
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006427 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
..|+.-...||+.|.+..++........|+.|.|+.|.|..|| .++++..|++|||+.|+++.+|...+.--|+.|.++
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 4566667789999999988777666678889999999999999 799999999999999999999998877779999999
Q ss_pred CCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchh
Q 006427 436 RNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 436 ~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
+|+++.+| .++.+..|..||.+.|.|..+|..++.+.+|+.|.+..|++..+ +.+. .-.|..||+++|+|.. ||
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~---iP 227 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY---LP 227 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee---cc
Confidence 99999886 58888999999999999999999999999999999999999988 5566 5579999999999998 78
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCC
Q 006427 514 QLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPI 560 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~I 560 (645)
..|.+|..|++|-|.+|+++. .|.. + ..-+...=.+||+.+.+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS-PPAq-I--C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS-PPAQ-I--CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC-ChHH-H--Hhccceeeeeeecchhc
Confidence 999999999999999999997 4443 1 11122333457776544
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.6e-12 Score=133.98 Aligned_cols=82 Identities=32% Similarity=0.415 Sum_probs=39.1
Q ss_pred CCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCccc-----cccCcCcCCCCCcEEEccCCCCCCc------cc
Q 006427 427 KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIF-----RIGHGLSNCTLIKELYLAGNKISDI------EG 489 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls-----~LP~~l~~L~sL~~L~Ls~N~Ls~l------~~ 489 (645)
++|+.|+|++|.+++. ..+..+..|++|+|++|.++ .++..+..+++|++|+|++|.+++. ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 3455555555555521 11334445555555555554 1222233344555555555555432 12
Q ss_pred ccCCCCCCEEECcCCCCCC
Q 006427 490 LHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 490 l~~L~~L~~LdLS~N~Ls~ 508 (645)
+..+++|++|++++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 3444555555555555553
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.3e-13 Score=148.33 Aligned_cols=218 Identities=21% Similarity=0.250 Sum_probs=172.3
Q ss_pred hhhcccCCCEEecCCccccccchhhccC---CCccEEEecCCCCCcCC-C--CCCCCCCCEEEccCCcCCCCCCC---CC
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLN---SSSAVAHIAGIGLKAIP-T--ISHFSSLRSVNLSNNFIVHIPTG---SM 425 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~---~~L~~L~Ls~N~Lt~IP-s--L~~L~~L~~LdLs~N~Lt~ip~~---~~ 425 (645)
-...+++++.||||.|.+..+..+..+. ++|+.|+|+.|.|...- + -..+++|+.|.|+.|.|+.-... ..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 5667899999999999998776655443 89999999999987543 2 34788999999999999832111 12
Q ss_pred CCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCCc--cc------ccCC
Q 006427 426 PKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISDI--EG------LHRL 493 (645)
Q Consensus 426 ~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~l--~~------l~~L 493 (645)
.++|+.|+|..|....+. ....+..|+.|||++|++-.++. ..+.++.|..|+++.|.|..+ +. ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 279999999999633332 35567899999999999987774 388999999999999999887 22 3567
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i 573 (645)
++|++|++..|+|..+..+ ..+..+.+|+.|.+..|.|... ...-+..+++.+++|..||...+.+++++.+-...+
T Consensus 301 ~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ln~e--~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNYLNKE--TDTAKLLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred ccceeeecccCcccccccc-chhhccchhhhhhccccccccc--ccceeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 8999999999999887654 3467788999999999999753 334445678889999999999999999888766666
Q ss_pred HH
Q 006427 574 AK 575 (645)
Q Consensus 574 ~~ 575 (645)
.+
T Consensus 378 ~~ 379 (505)
T KOG3207|consen 378 SK 379 (505)
T ss_pred hh
Confidence 55
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-13 Score=146.63 Aligned_cols=205 Identities=26% Similarity=0.323 Sum_probs=154.3
Q ss_pred ccCCCCCCCCCChhhhhcccCCCEEecCCccccccchh--hccCCCccEEEecCCCCCcCC--CCCC-------------
Q 006427 341 IFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVI--RSLNSSSAVAHIAGIGLKAIP--TISH------------- 403 (645)
Q Consensus 341 ~~~~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l--~~L~~~L~~L~Ls~N~Lt~IP--sL~~------------- 403 (645)
+-+..+.+..+++..+..+.+|+.||||+|.++.+.+- +.+...++.+.+++|+|+.+| .|+.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 33456778888999999999999999999999877553 333344444555569999888 3444
Q ss_pred -----------CCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCC--------------------C---------
Q 006427 404 -----------FSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKIN--------------------T--------- 441 (645)
Q Consensus 404 -----------L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls--------------------~--------- 441 (645)
|++|..|.|..|.+..+..+.|. ..++.+.+..|.+- +
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 45566666666766666665554 45566655555410 0
Q ss_pred --------------------------------C-c--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCC
Q 006427 442 --------------------------------I-E--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 442 --------------------------------l-p--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls 485 (645)
+ | .|..|++|+.|+|++|.|+.|... |..+..|++|.|..|+|.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 0 1 155688999999999999988665 888899999999999998
Q ss_pred Cc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006427 486 DI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 486 ~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
.+ ..|.++..|+.|+|.+|+|+.+ -|..|..+..|..|+|-.|++.+.+-..++..|+-+
T Consensus 312 ~v~~~~f~~ls~L~tL~L~~N~it~~--~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 312 FVSSGMFQGLSGLKTLSLYDNQITTV--APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred HHHHHhhhccccceeeeecCCeeEEE--ecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 87 3488889999999999999987 667888999999999999999998887777776643
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=3.3e-11 Score=148.21 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=147.7
Q ss_pred hhhhhcccCCCEEecCCccccc--------cchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC
Q 006427 353 ARSTAHLTRRSEINLSEEILHA--------NSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS 424 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~--------~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~ 424 (645)
...+..+.+|+.|.+..+.... ...+..++..|+.|++.++.++.+|..-.+.+|+.|+|.+|.|..++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc
Confidence 4567889999999987654221 12244556789999999999999995446889999999999999887654
Q ss_pred CC-CCCCEEecCCC-CCCCCcCCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCC-CCCCcccccCCCCCCEEE
Q 006427 425 MP-KGLHTLNLSRN-KINTIEGLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGN-KISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 425 ~~-~sL~~LdLs~N-~Ls~lp~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N-~Ls~l~~l~~L~~L~~Ld 500 (645)
.. ++|+.|+|++| .+..+|.+..+++|+.|+|++|. +..+|..++++++|+.|+|++| .+..++...++++|+.|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 33 89999999987 47778889999999999999875 6689988999999999999986 566665544789999999
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
|++|..... +|. ...+|+.|+|++|.+.. +|.. ..+++|.+|+..
T Consensus 711 Lsgc~~L~~--~p~---~~~nL~~L~L~~n~i~~-lP~~-------~~l~~L~~L~l~ 755 (1153)
T PLN03210 711 LSGCSRLKS--FPD---ISTNISWLDLDETAIEE-FPSN-------LRLENLDELILC 755 (1153)
T ss_pred CCCCCCccc--ccc---ccCCcCeeecCCCcccc-cccc-------cccccccccccc
Confidence 999864332 443 24688999999998764 6643 134555555443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=2.6e-12 Score=133.91 Aligned_cols=205 Identities=26% Similarity=0.327 Sum_probs=146.5
Q ss_pred ChhhhhcccCCCEEecCCccccccc--hhhccC--CCccEEEecCCCCCcC-----C-CCCCC-CCCCEEEccCCcCCCC
Q 006427 352 PARSTAHLTRRSEINLSEEILHANS--VIRSLN--SSSAVAHIAGIGLKAI-----P-TISHF-SSLRSVNLSNNFIVHI 420 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~--~l~~L~--~~L~~L~Ls~N~Lt~I-----P-sL~~L-~~L~~LdLs~N~Lt~i 420 (645)
++..+.++.+|+.|+|++|.+.... .+..+. ++|+.|++++|.+... . .+..+ ++|+.|+|++|.++..
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 3556777889999999999886322 122222 4599999999998731 1 35566 8999999999999842
Q ss_pred CCC----CCC--CCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCC
Q 006427 421 PTG----SMP--KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 421 p~~----~~~--~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~ 483 (645)
... .+. .+|++|+|++|.+++. ..+..+++|+.|+|++|.|+. +...+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 111 111 5899999999999842 235566899999999999872 34446778999999999999
Q ss_pred CCCc--ccc-----cCCCCCCEEECcCCCCC--CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCce
Q 006427 484 ISDI--EGL-----HRLLKLTVLDMSFNKIT--TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVY 554 (645)
Q Consensus 484 Ls~l--~~l-----~~L~~L~~LdLS~N~Ls--~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~ 554 (645)
+++. ..+ .....|+.|++++|.|+ +...+...+..+++|++|++++|.+...- ...+.......-+.|+.
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~-~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELES 311 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH-HHHHHHHHhhcCCchhh
Confidence 9863 221 12479999999999998 33345667788899999999999998532 22232222222256777
Q ss_pred ecc
Q 006427 555 LNK 557 (645)
Q Consensus 555 Ld~ 557 (645)
|+.
T Consensus 312 ~~~ 314 (319)
T cd00116 312 LWV 314 (319)
T ss_pred ccc
Confidence 764
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=7.3e-11 Score=145.18 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=62.4
Q ss_pred hhhhhcccCCCEEecCCcc-ccccchhhccCCCccEEEecCCC-CCcCC-CCCCCCCCCEEEccCC-cCCCCCCCCCCCC
Q 006427 353 ARSTAHLTRRSEINLSEEI-LHANSVIRSLNSSSAVAHIAGIG-LKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKG 428 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~-l~~~~~l~~L~~~L~~L~Ls~N~-Lt~IP-sL~~L~~L~~LdLs~N-~Lt~ip~~~~~~s 428 (645)
+..+..+++|+.|+|+++. +..++.+. ..++|+.|+|++|. +..+| .+..+++|+.|+|++| .++.+|.....++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 3445667777888887653 33333322 23677777777764 55666 5677777777777764 4556665444456
Q ss_pred CCEEecCCCC-CCCCcCCCCCCCCcEEEccCCcccccc
Q 006427 429 LHTLNLSRNK-INTIEGLREMTRLRVLDLSYNRIFRIG 465 (645)
Q Consensus 429 L~~LdLs~N~-Ls~lp~L~~L~sL~~LdLS~N~Ls~LP 465 (645)
|+.|+|++|. +..+|.+ ..+|+.|+|++|.|..+|
T Consensus 706 L~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCEEeCCCCCCccccccc--cCCcCeeecCCCcccccc
Confidence 6666666653 2222321 234555555555554444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=3.5e-12 Score=138.42 Aligned_cols=182 Identities=25% Similarity=0.349 Sum_probs=157.9
Q ss_pred hhhhcccCCCEEecCCccccccchhhccCC-CccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCC-CCCCCC
Q 006427 354 RSTAHLTRRSEINLSEEILHANSVIRSLNS-SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLH 430 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~-~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~ 430 (645)
..+..++.+..|++.+|.+..+........ +|+.|++++|.+..+| .+..+++|+.|++++|.++.++... ..+.|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 455566889999999999999888888874 9999999999999997 7899999999999999999998876 568999
Q ss_pred EEecCCCCCCCCcCC-CCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCC
Q 006427 431 TLNLSRNKINTIEGL-REMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 431 ~LdLs~N~Ls~lp~L-~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~ 508 (645)
.|++++|+++.++.. ..+..|++|.+++|.+..++..+.++.++..|.+.+|++..+ ..+..+.+|+.|++++|.++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 999999999999875 456669999999997777777788999999999999999884 678888899999999999998
Q ss_pred ccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006427 509 TKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 509 ~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
+. . ++.+.+|+.|++++|.+...++..
T Consensus 270 i~---~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 IS---S-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cc---c-ccccCccCEEeccCccccccchhh
Confidence 53 3 789999999999999998755543
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=6e-13 Score=141.76 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=47.3
Q ss_pred hhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEE-ecCCCCCCCCc
Q 006427 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTL-NLSRNKINTIE 443 (645)
Q Consensus 377 ~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~L-dLs~N~Ls~lp 443 (645)
++..+++....|.|..|+|+.|| .|+.+++|+.|||++|+|+.|.+.+|. .+|..| ++++|+|+.++
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 45566677777888888888887 578888888888888888888777765 444444 34447777653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=6.6e-11 Score=128.48 Aligned_cols=184 Identities=28% Similarity=0.355 Sum_probs=149.6
Q ss_pred CEEecCCccc-cccchhhccCCCccEEEecCCCCCcCCC-CCCCC-CCCEEEccCCcCCCCC-CCCCCCCCCEEecCCCC
Q 006427 363 SEINLSEEIL-HANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFS-SLRSVNLSNNFIVHIP-TGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 363 ~~LdLS~n~l-~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~-~L~~LdLs~N~Lt~ip-~~~~~~sL~~LdLs~N~ 438 (645)
..+++..+.+ .....+..+ +.+..|++.+|.++.++. ...+. +|+.|++++|.+..++ +...+++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~-~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcc-cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3577777776 333333333 678999999999999995 44553 9999999999999985 44566899999999999
Q ss_pred CCCCcCCC-CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCC-CCCcccccCCCCCCEEECcCCCCCCccchhHhh
Q 006427 439 INTIEGLR-EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNK-ISDIEGLHRLLKLTVLDMSFNKITTTKALGQLV 516 (645)
Q Consensus 439 Ls~lp~L~-~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~-Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l 516 (645)
++.++... .++.|+.|++++|++..+|..+..+..|++|.+++|. +..+..+..+.++..|.+.+|++.. ++..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~---~~~~~ 251 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED---LPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee---ccchh
Confidence 99998755 8999999999999999999777677789999999994 5555778889999999999999987 35678
Q ss_pred hcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 517 ANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 517 ~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
+.+++|+.|++++|.++. ++. ++.+.+|+.|+..
T Consensus 252 ~~l~~l~~L~~s~n~i~~-i~~-------~~~~~~l~~L~~s 285 (394)
T COG4886 252 GNLSNLETLDLSNNQISS-ISS-------LGSLTNLRELDLS 285 (394)
T ss_pred ccccccceeccccccccc-ccc-------ccccCccCEEecc
Confidence 899999999999999976 322 4567778888764
No 30
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-11 Score=135.52 Aligned_cols=173 Identities=35% Similarity=0.420 Sum_probs=121.8
Q ss_pred cccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCC
Q 006427 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~ 436 (645)
.+..+..++|..|.+.....-.....+|..|++.+|+|..+.. +..+++|++|+|++|.|+.+........|+.|++++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 4445555567777666522212223677788888888888886 788888888888888888877766666788888888
Q ss_pred CCCCCCcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHh
Q 006427 437 NKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515 (645)
Q Consensus 437 N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~ 515 (645)
|.|+.+..+..+..|+.|++++|++..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+..++
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~-- 227 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN-- 227 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc--
Confidence 8888888887788888888888888877543 4677788888888888877766666666666677777776653322
Q ss_pred hhcCC--CCcEEEccCCCCCc
Q 006427 516 VANYQ--SLLALNLLGNPIQS 534 (645)
Q Consensus 516 l~~L~--sL~~LdLs~N~L~g 534 (645)
.+. .|+.+++.+|++.-
T Consensus 228 --~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 228 --ELVMLHLRELYLSGNRISR 246 (414)
T ss_pred --cchhHHHHHHhcccCcccc
Confidence 222 26667777776653
No 31
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.05 E-value=6.7e-12 Score=141.47 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=155.6
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--------CCC---CCCCCCEEEccCCcCCCCC
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--------TIS---HFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--------sL~---~L~~L~~LdLs~N~Lt~ip 421 (645)
|-.+.-+..|++|.|.+..+.....+..+...|+.|.+. |.++.+. .++ ..-.|...+.++|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 567888889999999998887666666666777777554 3443221 222 2335788899999998765
Q ss_pred CC-CCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcccccCCCCCCEE
Q 006427 422 TG-SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEGLHRLLKLTVL 499 (645)
Q Consensus 422 ~~-~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~L 499 (645)
.. .+.+.|+.|+|++|+++.+..+..|+.|++|||++|.+..+|.. ...| .|+.|.|++|.++.+.++.++.+|+.|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhcc
Confidence 43 34488999999999999999999999999999999999999854 3333 499999999999999999999999999
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC-----CCceecccCCChh
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP-----KLVYLNKQPIKPQ 563 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~-----~L~~Ld~~~Is~n 563 (645)
||++|-|.+...+- .+..+..|+.|+|.||++.|.- .+|......+. .=-.||+..++..
T Consensus 260 DlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c~p---~hRaataqYl~~~~a~~~f~LDgk~l~~~ 324 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCCAP---WHRAATAQYLHKNSAPVKFKLDGKALGGR 324 (1096)
T ss_pred chhHhhhhcchhhh-HHHHHHHHHHHhhcCCccccCH---HHHHHHHhHhccccCCcceEecceeccch
Confidence 99999999876653 3567889999999999998732 45555544332 2225666544433
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.2e-11 Score=126.17 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=93.0
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCC-CCCCCCcEEEccCCc
Q 006427 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNR 460 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L-~~L~sL~~LdLS~N~ 460 (645)
..|+.|+|++|.|+.|. +..-++.++.|++++|.|..+....+..+|+.|||++|.++.+.++ ..+.+++.|.|+.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 45667777777777776 5666777788888888877776666667788888888877776553 345677777888887
Q ss_pred cccccCcCcCCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCc
Q 006427 461 IFRIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 461 Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|..+. +++.+-+|..|++.+|+|..+ ..+++++.|++|.|.+|.|.++
T Consensus 364 iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 364 IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 77763 677777788888888877765 5678888888888888888774
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=1.5e-11 Score=136.10 Aligned_cols=161 Identities=24% Similarity=0.322 Sum_probs=141.4
Q ss_pred ccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCcc
Q 006427 385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRI 461 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~L 461 (645)
...++|+.|++..+| .++.|..|+.|.|..|.|..|+..... ..|++|+|+.|+++.+|. ++.|+ |+.|.+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 457899999999999 688889999999999999988866444 789999999999999864 66665 99999999999
Q ss_pred ccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhH
Q 006427 462 FRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQ 540 (645)
Q Consensus 462 s~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~ 540 (645)
+.+|..++.+..|..|+.+.|.|..+ +.++.+.+|+.|.+..|++.. +|..++ .-.|..||++.|++.. ||.+
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~---lp~El~-~LpLi~lDfScNkis~-iPv~- 229 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED---LPEELC-SLPLIRLDFSCNKISY-LPVD- 229 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh---CCHHHh-CCceeeeecccCceee-cchh-
Confidence 99999999889999999999999988 679999999999999999988 677777 4478899999999986 8887
Q ss_pred HHHHHhcCCCCCceecc
Q 006427 541 LRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 541 l~~~vl~~L~~L~~Ld~ 557 (645)
+..|..|++|.+
T Consensus 230 -----fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 230 -----FRKMRHLQVLQL 241 (722)
T ss_pred -----hhhhhhheeeee
Confidence 778899987654
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=128.62 Aligned_cols=176 Identities=30% Similarity=0.343 Sum_probs=124.5
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+..+.+|..|+|.+|.+..+.......++|++|+|++|.|+.+..+..++.|+.|++++|.|..+........|+.|++
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 35667788888888888887766333347888888888888888888888888888888888888776665678888888
Q ss_pred CCCCCCCCcC--CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCC--CCEEECcCCCCCCcc
Q 006427 435 SRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLK--LTVLDMSFNKITTTK 510 (645)
Q Consensus 435 s~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~--L~~LdLS~N~Ls~~~ 510 (645)
++|.+..++. +..+.+|+.|++.+|.+..+. .+..+..+..+++..|.++.+..+..+.. |+.+++++|.+...
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~- 247 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS- 247 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc-
Confidence 8888888776 577888888888888877653 33344455555666776666655554444 66777777766653
Q ss_pred chhHhhhcCCCCcEEEccCCCCCc
Q 006427 511 ALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 511 ~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
+..+..+..+..|++..|.+..
T Consensus 248 --~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 248 --PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred --cccccccccccccchhhccccc
Confidence 2334556666666666666644
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.3e-10 Score=120.84 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=140.6
Q ss_pred ChhhhhcccCCCEEecCCccccccch--hhccCCCccEEEecCCCCCcCC----CCCCCCCCCEEEccCCcCCCCCCCC-
Q 006427 352 PARSTAHLTRRSEINLSEEILHANSV--IRSLNSSSAVAHIAGIGLKAIP----TISHFSSLRSVNLSNNFIVHIPTGS- 424 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~--l~~L~~~L~~L~Ls~N~Lt~IP----sL~~L~~L~~LdLs~N~Lt~ip~~~- 424 (645)
+...-.++.+|+.+.|.+........ .....++++.|+|+.|-|..+- -...|++|+.|+|+.|.+.......
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 35566788999999998887776653 3444489999999999998653 2568999999999999987533221
Q ss_pred --CCCCCCEEecCCCCCCCC--c-CCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCCCCCCc---ccccCCCC
Q 006427 425 --MPKGLHTLNLSRNKINTI--E-GLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLK 495 (645)
Q Consensus 425 --~~~sL~~LdLs~N~Ls~l--p-~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~ 495 (645)
...+|+.|.|+.|.|+.- . -+..+++|+.|+|..|. +..-......+..|+.|+|++|++-+. ...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 237999999999999842 1 25678999999999995 322112244567899999999998776 45788999
Q ss_pred CCEEECcCCCCCCccchhHh-----hhcCCCCcEEEccCCCCCc
Q 006427 496 LTVLDMSFNKITTTKALGQL-----VANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 496 L~~LdLS~N~Ls~~~~LP~~-----l~~L~sL~~LdLs~N~L~g 534 (645)
|..|+++.|.|..+. +|+. ...+++|++|++..|++..
T Consensus 273 L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhhccccCcchhc-CCCccchhhhcccccceeeecccCcccc
Confidence 999999999998874 3443 4578999999999999954
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.9e-09 Score=111.97 Aligned_cols=209 Identities=15% Similarity=0.206 Sum_probs=141.5
Q ss_pred ccCCCEEecCCccccccchhhccC---CCccEEEecCCCCCc-CCCC-CCCCCCCEEEccCCcCCCCCCCCCC---CCCC
Q 006427 359 LTRRSEINLSEEILHANSVIRSLN---SSSAVAHIAGIGLKA-IPTI-SHFSSLRSVNLSNNFIVHIPTGSMP---KGLH 430 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l~~L~---~~L~~L~Ls~N~Lt~-IPsL-~~L~~L~~LdLs~N~Lt~ip~~~~~---~sL~ 430 (645)
...++.+||..|.+..+..+..+. |.|++|+|+.|.|.. |..+ ..+.+|++|.|.+..+.--....+. +.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456777888888887776655443 777888888887763 3343 3566788888877776532222222 5667
Q ss_pred EEecCCCCCCCC--c--CCC-CCCCCcEEEccCCccc---cccCcCcCCCCCcEEEccCCCCCCc---ccccCCCCCCEE
Q 006427 431 TLNLSRNKINTI--E--GLR-EMTRLRVLDLSYNRIF---RIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLKLTVL 499 (645)
Q Consensus 431 ~LdLs~N~Ls~l--p--~L~-~L~sL~~LdLS~N~Ls---~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L~~L 499 (645)
.|.++.|.+..+ . ... .-+.+.+|.+..|... .+-.--.-++++..+.+..|.|... .....++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777777754432 1 011 1224444554444333 1111112346888888999988776 456777888899
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhh
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAREL 568 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~ 568 (645)
+|+.|+|..+..+ ..+..++.|..|.+.+|++...+-...-+..+++.|++++.||+..|+..++...
T Consensus 230 nL~~~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS 297 (418)
T KOG2982|consen 230 NLGANNIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS 297 (418)
T ss_pred hhcccccccHHHH-HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence 9999999988655 5578999999999999999876655555667889999999999999987766443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=1.2e-08 Score=107.93 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=147.2
Q ss_pred hhhcccCCCEEecCCcccccc-----chhhccCCCccEEEecCCCCC----cCC--------CCCCCCCCCEEEccCCcC
Q 006427 355 STAHLTRRSEINLSEEILHAN-----SVIRSLNSSSAVAHIAGIGLK----AIP--------TISHFSSLRSVNLSNNFI 417 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~-----~~l~~L~~~L~~L~Ls~N~Lt----~IP--------sL~~L~~L~~LdLs~N~L 417 (645)
.+..+..++.++|++|.+..- .....-.++|+..++++--.. .+| .+-.++.|++|+||.|-|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 445566778888888877521 111122257777777754322 334 144667888888888887
Q ss_pred CCCCCCCC------CCCCCEEecCCCCCCCC---------------cCCCCCCCCcEEEccCCcccccc-----CcCcCC
Q 006427 418 VHIPTGSM------PKGLHTLNLSRNKINTI---------------EGLREMTRLRVLDLSYNRIFRIG-----HGLSNC 471 (645)
Q Consensus 418 t~ip~~~~------~~sL~~LdLs~N~Ls~l---------------p~L~~L~sL~~LdLS~N~Ls~LP-----~~l~~L 471 (645)
..-....| +..|+.|.|.+|.|... .....-+.|+++..++|++..-+ ..|..+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 63222111 26788888888887642 11345578888888888887433 336677
Q ss_pred CCCcEEEccCCCCCCc------ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006427 472 TLIKELYLAGNKISDI------EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l------~~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
+.|+.+.+..|.|..- ..+..++.|++|||..|.|+.- ..+...+..++.|+.|++++|.+...- ...+..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G-a~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG-AIAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc-HHHHHH
Confidence 8888888888887542 4578888899999999888743 234556777888889999888886533 334556
Q ss_pred HHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCC
Q 006427 544 AVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGR 595 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~l 595 (645)
.+-...|+|+.|++ ..|++...--..+...+. . ...+..+.+..|.|
T Consensus 264 al~~~~p~L~vl~l---~gNeIt~da~~~la~~~~-e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLEL---AGNEITRDAALALAACMA-E-KPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceecc---CcchhHHHHHHHHHHHHh-c-chhhHHhcCCcccc
Confidence 66666888888875 333332211111221111 1 34555566666666
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=4.3e-08 Score=113.71 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=86.3
Q ss_pred CCEEecCCCCCCCC-c-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcC
Q 006427 429 LHTLNLSRNKINTI-E-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSF 503 (645)
Q Consensus 429 L~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~ 503 (645)
++.|+|++|.|.+. + .++.+++|+.|+|++|.|. .+|..++.+++|+.|+|++|.|++. ..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888888888763 3 4888889999999999887 7887788889999999999988874 4588888999999999
Q ss_pred CCCCCccchhHhhhcC-CCCcEEEccCCCCCcCCC
Q 006427 504 NKITTTKALGQLVANY-QSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 504 N~Ls~~~~LP~~l~~L-~sL~~LdLs~N~L~g~iP 537 (645)
|.|++. +|..+..+ .++..+++.+|+..|.+|
T Consensus 500 N~l~g~--iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGR--VPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred Cccccc--CChHHhhccccCceEEecCCccccCCC
Confidence 998876 77777653 467788888888776554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=8e-09 Score=109.35 Aligned_cols=180 Identities=23% Similarity=0.271 Sum_probs=124.8
Q ss_pred hhhhcccCCCEEecCCccccccc--h---hhccCCCccEEEecCCCCCcCC---------------CCCCCCCCCEEEcc
Q 006427 354 RSTAHLTRRSEINLSEEILHANS--V---IRSLNSSSAVAHIAGIGLKAIP---------------TISHFSSLRSVNLS 413 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~--~---l~~L~~~L~~L~Ls~N~Lt~IP---------------sL~~L~~L~~LdLs 413 (645)
..+...++|+.+|||+|.+.... . +..-...|++|.|.+|+|.... .+..-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34455568888888888775322 2 2222367888888888886432 13455678888888
Q ss_pred CCcCCCCCCCCC------CCCCCEEecCCCCCCC--C----cCCCCCCCCcEEEccCCccc-----cccCcCcCCCCCcE
Q 006427 414 NNFIVHIPTGSM------PKGLHTLNLSRNKINT--I----EGLREMTRLRVLDLSYNRIF-----RIGHGLSNCTLIKE 476 (645)
Q Consensus 414 ~N~Lt~ip~~~~------~~sL~~LdLs~N~Ls~--l----p~L~~L~sL~~LdLS~N~Ls-----~LP~~l~~L~sL~~ 476 (645)
+|++..-+.... .+.|+.+.+..|.|.. + ..|..+++|++|||.+|.|+ .+...+..+++|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 888876554322 2678888888888763 2 34778888899999988887 23344777788888
Q ss_pred EEccCCCCCCc------ccc-cCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCC
Q 006427 477 LYLAGNKISDI------EGL-HRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQ 533 (645)
Q Consensus 477 L~Ls~N~Ls~l------~~l-~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~ 533 (645)
|++++|.+..- ..+ ...++|++|.|.+|.|+.- ..+...+...+.|..|+|++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88888888652 112 3367888888888888742 124455667888888899988883
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.57 E-value=4.1e-08 Score=97.51 Aligned_cols=141 Identities=28% Similarity=0.325 Sum_probs=90.6
Q ss_pred CCEEEccCCcCCCCCCC-CCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCC
Q 006427 407 LRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~-~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls 485 (645)
=+.++|.+.++..+... ....+...+||++|.|..++.|..++.|.+|.|++|+|+.|.+.+..+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~-------------- 86 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF-------------- 86 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh--------------
Confidence 45566666666544331 222455666666666666666666666666666666666655444322
Q ss_pred CcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhh
Q 006427 486 DIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRA 565 (645)
Q Consensus 486 ~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~ 565 (645)
+++|..|.|.+|.|..+.++ .-+..|+.|++|.+-+|+++. ...||..++..+|+|+.||.+.|+.+++
T Consensus 87 -------~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 87 -------LPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred -------ccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhc---ccCceeEEEEecCcceEeehhhhhHHHH
Confidence 23344455555554443333 225678889999999999864 3478888999999999999999998888
Q ss_pred hhhhhHH
Q 006427 566 RELLTDS 572 (645)
Q Consensus 566 ~g~i~~~ 572 (645)
..+..-.
T Consensus 156 ~~A~~~f 162 (233)
T KOG1644|consen 156 EEAEVFF 162 (233)
T ss_pred HHHHHHh
Confidence 7765543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=109.33 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEE
Q 006427 450 RLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526 (645)
Q Consensus 450 sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~Ld 526 (645)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.|++. ..+..+++|+.|+|++|.|++. +|..++.+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEE
Confidence 4788999999998 7888899999999999999999864 4689999999999999999986 889999999999999
Q ss_pred ccCCCCCcCCChh
Q 006427 527 LLGNPIQSNISDD 539 (645)
Q Consensus 527 Ls~N~L~g~iP~~ 539 (645)
|++|.+.|.+|..
T Consensus 497 Ls~N~l~g~iP~~ 509 (623)
T PLN03150 497 LNGNSLSGRVPAA 509 (623)
T ss_pred CcCCcccccCChH
Confidence 9999999999876
No 42
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.2e-08 Score=105.41 Aligned_cols=123 Identities=28% Similarity=0.329 Sum_probs=106.0
Q ss_pred CCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEc
Q 006427 448 MTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNL 527 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdL 527 (645)
+.+.+.|++-++.|+.|. ....++.|+.|.|+-|+|+.+..+..|++|+.|+|..|.|.++.+| ..+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhh
Confidence 445677888888888773 4557889999999999999998899999999999999999988765 45789999999999
Q ss_pred cCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006427 528 LGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 528 s~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i 573 (645)
..|+-.|.-+. .|+..++..||+|+.||..+|+.++...++.+.+
T Consensus 96 ~ENPCc~~ag~-nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~g~ 140 (388)
T KOG2123|consen 96 DENPCCGEAGQ-NYRRKVLRVLPNLKKLDNVPVTEEELEEALRDGI 140 (388)
T ss_pred ccCCcccccch-hHHHHHHHHcccchhccCccccHHHHHHHHhcCC
Confidence 99999887665 6999999999999999999999999988887666
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.9e-07 Score=75.29 Aligned_cols=55 Identities=35% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCC
Q 006427 429 LHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNK 483 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~ 483 (645)
|++|+|++|+|+.++ .|..+++|++|+|++|.|+.++.. |..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444444444432 244444444444444444444432 4444444444444444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=4.1e-09 Score=119.42 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=101.4
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKI 439 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~L 439 (645)
.|...+.++|.+.....-..+.+.|+.|+|+.|+++.+..+..|+.|+.|||++|.+..+|..... ..|..|.|++|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 566677888888766666666688889999999999888888899999999999999888765332 4599999999999
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCC
Q 006427 440 NTIEGLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISD 486 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~ 486 (645)
+.+-++.+|.+|+.|||++|-|..... .+..+..|+.|+|.+|.|-.
T Consensus 245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 988888899999999999998875432 25677788999999998754
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.8e-07 Score=74.28 Aligned_cols=58 Identities=33% Similarity=0.474 Sum_probs=42.3
Q ss_pred CCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCC
Q 006427 449 TRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~L 506 (645)
++|++|+|++|+|+.+|.. |..+++|++|++++|.|+.+ ..|..+++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888877754 67777777777777777776 3467777777777777764
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.31 E-value=8.4e-07 Score=88.34 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=76.4
Q ss_pred CCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC--CCCCCCEEecCCCCC
Q 006427 362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS--MPKGLHTLNLSRNKI 439 (645)
Q Consensus 362 L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~--~~~sL~~LdLs~N~L 439 (645)
-+.++|.+..+.....+..+......++|++|.|..++.|..++.|..|.|++|+|+.|.+.. +.++|..|.|.+|.|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344555555444433344444556678888888888888888888888888888888877653 336777777777777
Q ss_pred CCC---cCCCCCCCCcEEEccCCccccccCc----CcCCCCCcEEEccC
Q 006427 440 NTI---EGLREMTRLRVLDLSYNRIFRIGHG----LSNCTLIKELYLAG 481 (645)
Q Consensus 440 s~l---p~L~~L~sL~~LdLS~N~Ls~LP~~----l~~L~sL~~L~Ls~ 481 (645)
..+ ..+..|++|++|.+-+|.++..... +..+++|+.||+.+
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 654 3355666667776666666643321 44555555555443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.3e-06 Score=90.41 Aligned_cols=204 Identities=20% Similarity=0.218 Sum_probs=144.7
Q ss_pred hhhhcccCCCEEecCCccccccc--hh---hccCCCccEEEecCCCCC----cCC--------CCCCCCCCCEEEccCCc
Q 006427 354 RSTAHLTRRSEINLSEEILHANS--VI---RSLNSSSAVAHIAGIGLK----AIP--------TISHFSSLRSVNLSNNF 416 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~--~l---~~L~~~L~~L~Ls~N~Lt----~IP--------sL~~L~~L~~LdLs~N~ 416 (645)
..+..+..|..++||+|.+..-. .+ ..-..+|++.+++.--.. .++ .+-.|+.|+.++|+.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34555788999999999876321 11 111267778887765433 222 36789999999999999
Q ss_pred CCCCCCCC------CCCCCCEEecCCCCCCCCcC---------------CCCCCCCcEEEccCCccccccCc-----CcC
Q 006427 417 IVHIPTGS------MPKGLHTLNLSRNKINTIEG---------------LREMTRLRVLDLSYNRIFRIGHG-----LSN 470 (645)
Q Consensus 417 Lt~ip~~~------~~~sL~~LdLs~N~Ls~lp~---------------L~~L~sL~~LdLS~N~Ls~LP~~-----l~~ 470 (645)
|..-.+.. -.+.|..|.|++|.+.-+.+ ...-+.|+++++..|++...+.. +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 87432221 12789999999998865421 23467899999999999865533 333
Q ss_pred CCCCcEEEccCCCCCC--c-----ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChhHH
Q 006427 471 CTLIKELYLAGNKISD--I-----EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDDQL 541 (645)
Q Consensus 471 L~sL~~L~Ls~N~Ls~--l-----~~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l 541 (645)
-.+|+.+.+..|.|.. + ..+..+.+|++|||..|-++.. ..+...+..++.|+.|.+..|-+...-....+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 3589999999998864 2 3467788999999999998853 23556678888999999999998876666656
Q ss_pred HHHHhcCCCCCceecc
Q 006427 542 RKAVCSLLPKLVYLNK 557 (645)
Q Consensus 542 ~~~vl~~L~~L~~Ld~ 557 (645)
+.+--...|+|..|-+
T Consensus 264 ~~f~e~~~p~l~~L~~ 279 (388)
T COG5238 264 RRFNEKFVPNLMPLPG 279 (388)
T ss_pred HHhhhhcCCCcccccc
Confidence 6655556777776654
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=3.9e-06 Score=100.70 Aligned_cols=137 Identities=33% Similarity=0.462 Sum_probs=109.7
Q ss_pred CCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC--CCCCcC--CCCCCCCcEEEccCC-ccccccCc
Q 006427 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK--INTIEG--LREMTRLRVLDLSYN-RIFRIGHG 467 (645)
Q Consensus 393 N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~--Ls~lp~--L~~L~sL~~LdLS~N-~Ls~LP~~ 467 (645)
.++..+|........+.+.+-+|.+..++...-++.|++|-+..|. +..++. |..++.|++|||++| .+..+|..
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 4555677666677888889999998887766666789999998886 565554 788999999999987 46689988
Q ss_pred CcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCC
Q 006427 468 LSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNP 531 (645)
Q Consensus 468 l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~ 531 (645)
++.+-+|++|+|++..++.+ ..+.++..|.+|++..+..... +|..+..+.+|++|.+....
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccc
Confidence 99999999999999999887 5688899999999988775443 45666778999999887765
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.95 E-value=4.4e-06 Score=85.99 Aligned_cols=74 Identities=30% Similarity=0.394 Sum_probs=51.6
Q ss_pred CCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhh
Q 006427 493 LLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 493 L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~ 570 (645)
+++|++|+|++|+|..+..++. +..+.+|..|++..|..+. ...++..++..+++|++||..++..++......
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~~ 163 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVDGEEAPEADA 163 (260)
T ss_pred CCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhccccccccCCcccccccc
Confidence 3555555555555554433322 4667778888888887766 346888899999999999999888776654443
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=4.7e-05 Score=83.90 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=85.4
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecC-CCCCcCCC-CCCCCCCCEEEccCC-cCCCCCCCCCCCCCCE
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAG-IGLKAIPT-ISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHT 431 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~-N~Lt~IPs-L~~L~~L~~LdLs~N-~Lt~ip~~~~~~sL~~ 431 (645)
.+..+.+++.|+++++.+..++ .++.+|+.|.+++ +.|+.+|. + .++|+.|+|++| .+..+ +.+|+.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~ 116 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS 116 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence 3455678888888888776654 4667888888876 45667773 3 357888888887 55433 456888
Q ss_pred EecCCCCCCCCcCCCCCCCCcEEEccCCccc---cccCcCcCC-CCCcEEEccCCCCCCcccccCCCCCCEEECcCCC
Q 006427 432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIF---RIGHGLSNC-TLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 432 LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls---~LP~~l~~L-~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~ 505 (645)
|+|..|.+..+..+. ++|+.|.+.+++.. .+|. .+ ++|++|++++|....++. .-..+|+.|.++.|.
T Consensus 117 L~L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKNVP--NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcccccCc--chHhheecccccccccccccc---ccCCcccEEEecCCCcccCcc-cccccCcEEEecccc
Confidence 888777655443221 25677777543311 2221 12 478888888877654421 112578888887764
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.91 E-value=7.5e-06 Score=98.29 Aligned_cols=146 Identities=26% Similarity=0.294 Sum_probs=96.0
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCc--CCCCCCCCCC--CCCCEEecCCC-CCCCCcC-CCCCCCCcEEEc
Q 006427 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNF--IVHIPTGSMP--KGLHTLNLSRN-KINTIEG-LREMTRLRVLDL 456 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~--Lt~ip~~~~~--~sL~~LdLs~N-~Ls~lp~-L~~L~sL~~LdL 456 (645)
..++.+.+-+|.+..++.-..++.|+.|-+..|. +..++...|. +.|++|||++| .+..+|. ++.|-+|++|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3556777777777777754555678888888876 5556554343 77888888876 4566664 777888888888
Q ss_pred cCCccccccCcCcCCCCCcEEEccCCCCC-Cccc-ccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEcc
Q 006427 457 SYNRIFRIGHGLSNCTLIKELYLAGNKIS-DIEG-LHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLL 528 (645)
Q Consensus 457 S~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls-~l~~-l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs 528 (645)
++..+..+|.++.++..|.+|++..+.-. .++. +..+.+|++|.|..-.......+-..+.++.+|+.|...
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888888888888888888877532 2333 344778888877665433221122334455555554443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=9.2e-07 Score=83.48 Aligned_cols=103 Identities=27% Similarity=0.304 Sum_probs=59.7
Q ss_pred CCCEEecCCCCCCCCc----CCCCCCCCcEEEccCCccccccCcCc-CCCCCcEEEccCCCCCCc-ccccCCCCCCEEEC
Q 006427 428 GLHTLNLSRNKINTIE----GLREMTRLRVLDLSYNRIFRIGHGLS-NCTLIKELYLAGNKISDI-EGLHRLLKLTVLDM 501 (645)
Q Consensus 428 sL~~LdLs~N~Ls~lp----~L~~L~sL~~LdLS~N~Ls~LP~~l~-~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdL 501 (645)
.+..|+|++|+|-.++ .+.....|+..+|++|.|..+|..|. .++.++.|+|++|.|+++ ..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3455566666555432 24445556666666666666665543 334566666666666665 33666666666666
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCC
Q 006427 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQ 533 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~ 533 (645)
+.|.|.. .|..+..+.+|..|+..+|.+.
T Consensus 108 ~~N~l~~---~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA---EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCcccc---chHHHHHHHhHHHhcCCCCccc
Confidence 6666655 4455555666666666666554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=4.4e-07 Score=85.61 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=61.9
Q ss_pred CCCEEecCCCCCCCCcC-CC-CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCC
Q 006427 428 GLHTLNLSRNKINTIEG-LR-EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFN 504 (645)
Q Consensus 428 sL~~LdLs~N~Ls~lp~-L~-~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N 504 (645)
.|+..+|++|.+..+|. |. ..+.++.|+|++|.|+.+|..+..++.|+.|+++.|.|... ..+..+.+|..|+..+|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 34445555555554432 22 23456666777777777776666777777777777776654 33444666777777777
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006427 505 KITTTKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
.+..++ ..+-.-..+-..++.++++.+..+..
T Consensus 134 a~~eid---~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 134 ARAEID---VDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCc---HHHhccccHHHHHhcCCcccccCccc
Confidence 766542 22212222223445677777766543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=60.94 Aligned_cols=37 Identities=43% Similarity=0.488 Sum_probs=15.6
Q ss_pred CCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCC
Q 006427 450 RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISD 486 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~ 486 (645)
+|++|+|++|+|+.||..+++|++|+.|+|++|+|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444444444444444334444444444444444443
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=8.6e-07 Score=92.63 Aligned_cols=172 Identities=22% Similarity=0.210 Sum_probs=120.2
Q ss_pred CCccEEEecCCCCCc--CC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCC-CCCCCc---CCCCCCCCcE
Q 006427 383 SSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN-KINTIE---GLREMTRLRV 453 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~--IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N-~Ls~lp---~L~~L~sL~~ 453 (645)
..|++|||+...|+. +- -+..|..|+.|.|.++++.+-....+. .+|+.|+|+.+ .|+... -+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 568889999888873 32 467888999999999998752222222 68999999887 455432 2678999999
Q ss_pred EEccCCccc-cc-cCcCcCC-CCCcEEEccCCC----CCCccc-ccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEE
Q 006427 454 LDLSYNRIF-RI-GHGLSNC-TLIKELYLAGNK----ISDIEG-LHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLAL 525 (645)
Q Consensus 454 LdLS~N~Ls-~L-P~~l~~L-~sL~~L~Ls~N~----Ls~l~~-l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~L 525 (645)
|+|+++.++ .. ...+... .+|+.|+|+++. .+++.. ...+++|.+|||+.|.--.- .+...|-.++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheee
Confidence 999999876 22 1112222 478899999873 233332 46789999999998764332 356778899999999
Q ss_pred EccCCCCCcCCChhHHHHHHhcCCCCCceecccCC
Q 006427 526 NLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPI 560 (645)
Q Consensus 526 dLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~I 560 (645)
.|+.|-. |+.+.+ ..+...|.|.|||..-+
T Consensus 344 SlsRCY~---i~p~~~--~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD---IIPETL--LELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC---CChHHe--eeeccCcceEEEEeccc
Confidence 9998865 333322 12567899999997543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00014 Score=80.25 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=64.6
Q ss_pred CCCEEecCC-ccccccchhhccCCCccEEEecCC-CCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC
Q 006427 361 RRSEINLSE-EILHANSVIRSLNSSSAVAHIAGI-GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 361 ~L~~LdLS~-n~l~~~~~l~~L~~~L~~L~Ls~N-~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~ 438 (645)
+|+.|.+++ +.+..++ ..++.+|+.|+|++| .|..+| ..|+.|+|.+|.+..+ ..++++|+.|.+.+++
T Consensus 73 sLtsL~Lsnc~nLtsLP--~~LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L--~~LPssLk~L~I~~~n 143 (426)
T PRK15386 73 ELTEITIENCNNLTTLP--GSIPEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDSI--KNVPNGLTSLSINSYN 143 (426)
T ss_pred CCcEEEccCCCCcccCC--chhhhhhhheEccCcccccccc-----cccceEEeCCCCCccc--ccCcchHhheeccccc
Confidence 477777765 3333222 234567788888877 666665 2466777776665443 2355677777775433
Q ss_pred CCCCcCCC-CC-CCCcEEEccCCccccccCcCcCCCCCcEEEccCCC
Q 006427 439 INTIEGLR-EM-TRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 439 Ls~lp~L~-~L-~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~ 483 (645)
......+. .+ ++|++|++++|....+|..+. .+|+.|.++.|.
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 11111111 12 578888888777665554433 477778877664
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.7e-05 Score=58.08 Aligned_cols=39 Identities=38% Similarity=0.536 Sum_probs=32.6
Q ss_pred CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCcccccc
Q 006427 427 KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIG 465 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP 465 (645)
++|++|+|++|+|+.++. +..|++|++|+|++|.|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 478899999999999887 999999999999999998775
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=3.4e-05 Score=80.94 Aligned_cols=177 Identities=17% Similarity=0.149 Sum_probs=118.0
Q ss_pred ChhhhhcccCCCEEecCCccccccchhhccC-CCccEEEecCCCCC--cCC-CCCCCCCCCEEEccCCcCCCCCCCC---
Q 006427 352 PARSTAHLTRRSEINLSEEILHANSVIRSLN-SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGS--- 424 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~-~~L~~L~Ls~N~Lt--~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~--- 424 (645)
+...+.+|+.|+.|+|++|.+.....-..++ .+|++|.|.+..|. ... .+..++.++.|+++.|++..+-...
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 3456788999999999999998643322223 78999999998876 333 4778899999999999665432221
Q ss_pred --CCCCCCEEecCCCCCCCCc---CC-CCCCCCcEEEccCCcccccc--CcCcCCCCCcEEEccCCCCCCc---ccccCC
Q 006427 425 --MPKGLHTLNLSRNKINTIE---GL-REMTRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI---EGLHRL 493 (645)
Q Consensus 425 --~~~sL~~LdLs~N~Ls~lp---~L-~~L~sL~~LdLS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l---~~l~~L 493 (645)
..+.+.+|.+..|...... .+ ..++++..+.+..|-|.+.. .....++.+..|+|+.|+|... ..+..+
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f 248 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF 248 (418)
T ss_pred cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC
Confidence 1245666666666443221 11 23467777778888776443 2355667777888888888765 557778
Q ss_pred CCCCEEECcCCCCCCcc----chhHhhhcCCCCcEEEcc
Q 006427 494 LKLTVLDMSFNKITTTK----ALGQLVANYQSLLALNLL 528 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~----~LP~~l~~L~sL~~LdLs 528 (645)
+.|..|.+++|.|...- ..--.++.+++++.|+=+
T Consensus 249 ~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 249 PQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 88888888888876430 111246777888877633
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.41 E-value=3.4e-05 Score=80.06 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=71.7
Q ss_pred hhhhcccCCCEEecCCccccccc-----hhhccCCCccEEEecCCCCCcCCC---------------CCCCCCCCEEEcc
Q 006427 354 RSTAHLTRRSEINLSEEILHANS-----VIRSLNSSSAVAHIAGIGLKAIPT---------------ISHFSSLRSVNLS 413 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~-----~l~~L~~~L~~L~Ls~N~Lt~IPs---------------L~~L~~L~~LdLs 413 (645)
..+..+++|+..+||+|.+..-. .+..-.+.|.+|.|++|++..+.. ...-+.|+++++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 45556677777777777664221 122223667777777777664431 1234556666666
Q ss_pred CCcCCCCCCCCCC------CCCCEEecCCCCCCC--C-----cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCc
Q 006427 414 NNFIVHIPTGSMP------KGLHTLNLSRNKINT--I-----EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIK 475 (645)
Q Consensus 414 ~N~Lt~ip~~~~~------~sL~~LdLs~N~Ls~--l-----p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~ 475 (645)
.|++...+..... .+|+.+.+..|.|.- + ..+..+.+|++|||..|.|+. +...++.++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 6666543332110 356666666666642 2 234455666666666666652 222244455566
Q ss_pred EEEccCCCCCC
Q 006427 476 ELYLAGNKISD 486 (645)
Q Consensus 476 ~L~Ls~N~Ls~ 486 (645)
.|.+..|-++.
T Consensus 246 EL~lnDClls~ 256 (388)
T COG5238 246 ELRLNDCLLSN 256 (388)
T ss_pred hccccchhhcc
Confidence 66666665543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00026 Score=83.28 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=69.9
Q ss_pred CCCCEEecCCCCCC--CCc-CC-CCCCCCcEEEccCCccc--cccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEE
Q 006427 427 KGLHTLNLSRNKIN--TIE-GL-REMTRLRVLDLSYNRIF--RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls--~lp-~L-~~L~sL~~LdLS~N~Ls--~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~Ld 500 (645)
.+|+.|++++...- +.+ .+ ..||.|+.|.+++=.+. ++.....++++|..||+++.+++.+.+++.+++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 46666666664332 111 12 23566676666665554 23233456667777777777777666667777777776
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHH--HhcCCCCCceecc
Q 006427 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKA--VCSLLPKLVYLNK 557 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~--vl~~L~~L~~Ld~ 557 (645)
+.+=.+.....+-. +-+|++|+.||+|........ ...... ....||+|+.||.
T Consensus 202 mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 202 MRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred ccCCCCCchhhHHH-HhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEec
Confidence 66655554333322 446777777777766554321 011111 1223667777765
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=4.1e-05 Score=80.37 Aligned_cols=186 Identities=22% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCCEEecCCccccccchhhccC--CCccEEEecCCCCCc-CC-CCCCCCCCCEEEccCC-cCCCCCCCCC---CCCCCEE
Q 006427 361 RRSEINLSEEILHANSVIRSLN--SSSAVAHIAGIGLKA-IP-TISHFSSLRSVNLSNN-FIVHIPTGSM---PKGLHTL 432 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~--~~L~~L~Ls~N~Lt~-IP-sL~~L~~L~~LdLs~N-~Lt~ip~~~~---~~sL~~L 432 (645)
.|+++|||...++.-.....+. ..|+.|.|.+++|.. |- .+..-.+|+.|+|+.+ .|+....... ++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5777788877766443322222 567777777777763 32 5667778888888874 3543322211 2677788
Q ss_pred ecCCCCCCCC--c-CCCC-CCCCcEEEccCCcc----ccccCcCcCCCCCcEEEccCCC-CCCc--ccccCCCCCCEEEC
Q 006427 433 NLSRNKINTI--E-GLRE-MTRLRVLDLSYNRI----FRIGHGLSNCTLIKELYLAGNK-ISDI--EGLHRLLKLTVLDM 501 (645)
Q Consensus 433 dLs~N~Ls~l--p-~L~~-L~sL~~LdLS~N~L----s~LP~~l~~L~sL~~L~Ls~N~-Ls~l--~~l~~L~~L~~LdL 501 (645)
+|+.|.+... . .+.. -.+|+.|+|++.+- +.+.--...+++|.+|+|+.|. |+.- ..|..++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888776532 1 1111 24677777776631 1332224578888888888874 3331 45777888888888
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCc
Q 006427 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLV 553 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~ 553 (645)
+.|....... --.+...++|.+|++.++ +|+.. .+.+...+++|+
T Consensus 346 sRCY~i~p~~-~~~l~s~psl~yLdv~g~-----vsdt~-mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYDIIPET-LLELNSKPSLVYLDVFGC-----VSDTT-MELLKEMLSHLK 390 (419)
T ss_pred hhhcCCChHH-eeeeccCcceEEEEeccc-----cCchH-HHHHHHhCcccc
Confidence 8886542211 123567788899988765 33322 223344466655
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00035 Score=82.21 Aligned_cols=126 Identities=24% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCccEEEecCCCCCc--CC-CC-CCCCCCCEEEccCCcCCCCCCCCC---CCCCCEEecCCCCCCCCcCCCCCCCCcEEE
Q 006427 383 SSSAVAHIAGIGLKA--IP-TI-SHFSSLRSVNLSNNFIVHIPTGSM---PKGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~--IP-sL-~~L~~L~~LdLs~N~Lt~ip~~~~---~~sL~~LdLs~N~Ls~lp~L~~L~sL~~Ld 455 (645)
.+|++|+++|...-. -| .+ ..||.|+.|.+.+-.+..-.-..+ .++|..||+++.+++.+.+++.|++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 455556655543221 11 12 245666666666544432110011 146666666666666665566666666666
Q ss_pred ccCCcccccc--CcCcCCCCCcEEEccCCCCCCc--------ccccCCCCCCEEECcCCCCCC
Q 006427 456 LSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI--------EGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 456 LS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l--------~~l~~L~~L~~LdLS~N~Ls~ 508 (645)
+.+=.|..-. ..+.+|++|+.||+|....... +.-..|++|+.||.|++.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5554444221 1355566666666665543321 122335666666666665553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.97 E-value=0.0028 Score=57.43 Aligned_cols=114 Identities=23% Similarity=0.419 Sum_probs=47.8
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCc
Q 006427 401 ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIK 475 (645)
Q Consensus 401 L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~ 475 (645)
|..+.+|+.+.+.. .+..|....|. .+|+.+.+.++ +..++ .|..+..|+.+.+.+ .+..++.. |..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 55566666666663 45566655554 46666666654 55543 255665667776654 44444433 45566666
Q ss_pred EEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCC
Q 006427 476 ELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSL 522 (645)
Q Consensus 476 ~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL 522 (645)
.+.+..+ +..+ ..+..+ +|+.+.+.. .+..+.. ..|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~--~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE--NAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS------GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC--ccccccccC
Confidence 6666554 4443 335554 666666554 3333322 344555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=3.7e-05 Score=80.06 Aligned_cols=78 Identities=26% Similarity=0.286 Sum_probs=53.5
Q ss_pred CccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcC---CCCCCCCcEEEccCCc
Q 006427 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRLRVLDLSYNR 460 (645)
Q Consensus 384 ~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~---L~~L~sL~~LdLS~N~ 460 (645)
+.+-|++.+|+|..|.-...|+.|++|.|+-|.|+.+.+..-+++|+.|+|..|.|..+.. +.++++|+.|.|..|-
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3445677777777766556677777777777777776666666777777777777776643 5667777777777664
Q ss_pred c
Q 006427 461 I 461 (645)
Q Consensus 461 L 461 (645)
-
T Consensus 100 C 100 (388)
T KOG2123|consen 100 C 100 (388)
T ss_pred c
Confidence 4
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.00066 Score=70.20 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCcEEEccCCcccccc--CcCcCCCCCcEEEccCCCCCCc-----ccccCCCCCCEEE
Q 006427 449 TRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI-----EGLHRLLKLTVLD 500 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l-----~~l~~L~~L~~Ld 500 (645)
++|++|+|+.|+|..+. ..+..+.+|..|++.+|..+.+ ..|.-+++|.+||
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 55555555555544221 1133444555555555554443 1244445555543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.25 E-value=0.016 Score=52.41 Aligned_cols=107 Identities=27% Similarity=0.492 Sum_probs=58.7
Q ss_pred CccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEcc
Q 006427 384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLS 457 (645)
Q Consensus 384 ~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS 457 (645)
.|+.+.+.. .++.|+ .|..+..|+.+.+..+ +..++...|. .+|+.+.+.+ .+..++ .|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 566777764 566676 5778888888888875 8777777665 5788888865 554443 37778899999987
Q ss_pred CCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCC
Q 006427 458 YNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKL 496 (645)
Q Consensus 458 ~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L 496 (645)
.+ +..++.. |.++ .|+.+.+.. .+..+ ..|.++++|
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 76 6667655 6665 888888876 44444 346666555
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.97 E-value=0.0011 Score=75.05 Aligned_cols=87 Identities=32% Similarity=0.455 Sum_probs=47.8
Q ss_pred CCCCcEEEccCCcccc-----ccCcCcCCCC-CcEEEccCCCCCCc------ccccCC-CCCCEEECcCCCCCCc--cch
Q 006427 448 MTRLRVLDLSYNRIFR-----IGHGLSNCTL-IKELYLAGNKISDI------EGLHRL-LKLTVLDMSFNKITTT--KAL 512 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~-----LP~~l~~L~s-L~~L~Ls~N~Ls~l------~~l~~L-~~L~~LdLS~N~Ls~~--~~L 512 (645)
..++++|.|++|.++. +-..+...+. +..|++..|.+.+. +.+..+ ..+++++++.|.|+.. ..+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4556666666666551 1112333443 55566666666542 234444 4566666666666642 234
Q ss_pred hHhhhcCCCCcEEEccCCCCCc
Q 006427 513 GQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 513 P~~l~~L~sL~~LdLs~N~L~g 534 (645)
...+..+..+++|.+..|++..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 5555666666666666666653
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.86 E-value=0.035 Score=36.00 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=16.4
Q ss_pred CCcEEEccCCccccccCcCcC
Q 006427 450 RLRVLDLSYNRIFRIGHGLSN 470 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~l~~ 470 (645)
+|++|||++|+|+.||..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877654
No 69
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.64 E-value=0.048 Score=61.82 Aligned_cols=92 Identities=33% Similarity=0.474 Sum_probs=63.8
Q ss_pred cCCCCCcEEEccCCCCCCcccc----cCCCCCCEEECcCC--CCCCccchhHhhhcCCCCcEEEccCCCCCcCCCh-hHH
Q 006427 469 SNCTLIKELYLAGNKISDIEGL----HRLLKLTVLDMSFN--KITTTKALGQLVANYQSLLALNLLGNPIQSNISD-DQL 541 (645)
Q Consensus 469 ~~L~sL~~L~Ls~N~Ls~l~~l----~~L~~L~~LdLS~N--~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~-~~l 541 (645)
.+.+.+..++|++|+|..+..+ ...++|..|+|++| .+....+++. -....|++|.|.||++....-. ..+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhhhHHH
Confidence 3556777888888888776433 33468889999998 5554433322 1334678999999999765432 235
Q ss_pred HHHHhcCCCCCceecccCCCh
Q 006427 542 RKAVCSLLPKLVYLNKQPIKP 562 (645)
Q Consensus 542 ~~~vl~~L~~L~~Ld~~~Is~ 562 (645)
...+...+|+|..||+..+.+
T Consensus 293 v~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred HHHHHHhcchheeecCcccCc
Confidence 556777899999999987766
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.50 E-value=0.0014 Score=74.17 Aligned_cols=171 Identities=23% Similarity=0.214 Sum_probs=117.4
Q ss_pred ccEEEecCCCCCcCC------CCCCCCCCCEEEccCCcCCCCCCC------CCC-CCCCEEecCCCCCCCC------cCC
Q 006427 385 SAVAHIAGIGLKAIP------TISHFSSLRSVNLSNNFIVHIPTG------SMP-KGLHTLNLSRNKINTI------EGL 445 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IP------sL~~L~~L~~LdLs~N~Lt~ip~~------~~~-~sL~~LdLs~N~Ls~l------p~L 445 (645)
+..|.|.+|.+..-. .+..+..|..|++++|.+...... ..+ ..|++|++..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556777777776433 366778888899999988732111 111 4677889999988864 236
Q ss_pred CCCCCCcEEEccCCccc-----cccCcCc----CCCCCcEEEccCCCCCCc------ccccCCCC-CCEEECcCCCCCC-
Q 006427 446 REMTRLRVLDLSYNRIF-----RIGHGLS----NCTLIKELYLAGNKISDI------EGLHRLLK-LTVLDMSFNKITT- 508 (645)
Q Consensus 446 ~~L~sL~~LdLS~N~Ls-----~LP~~l~----~L~sL~~L~Ls~N~Ls~l------~~l~~L~~-L~~LdLS~N~Ls~- 508 (645)
.....|+.|+++.|.+. .++..+. ...++++|.|.+|.++.. ..+...+. +..|++..|++.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66889999999999884 2333344 467899999999998864 23555555 7779999999984
Q ss_pred -ccchhHhhhcC-CCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 509 -TKALGQLVANY-QSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 509 -~~~LP~~l~~L-~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
...+...+..+ ..++.+++..|.|+..-... +.. ++..++.++.|..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~-L~~-~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD-LAE-VLVSCRQLEELSL 297 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHH-HHH-HHhhhHHHHHhhc
Confidence 33455556666 78899999999998644332 222 2344556666554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.75 E-value=0.0057 Score=62.74 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=46.1
Q ss_pred CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCc
Q 006427 445 LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLL 523 (645)
Q Consensus 445 L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~ 523 (645)
+......+.||++.|++..+...|..++.|..|+++.|.+..+ ..++.+..+..+++..|+.+. +|..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~---~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ---QPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh---CCccccccCCcc
Confidence 3344455555555555555544455555555555555555544 334445555555555555554 445555566666
Q ss_pred EEEccCCCC
Q 006427 524 ALNLLGNPI 532 (645)
Q Consensus 524 ~LdLs~N~L 532 (645)
++++.+|+|
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 666666654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.47 E-value=0.0075 Score=61.91 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCcCC--CCCCCCCCCEEEccCCcCCCCCCC-CCCCCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcC
Q 006427 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSN 470 (645)
Q Consensus 395 Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~-~~~~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~ 470 (645)
+..+| .+..+...+.||++.|++..+... ...+.|..|+++.|.|..+| +++.+..+..+++..|+++.+|.+++.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 33555 456666677777777766544322 11245666666666666554 355555566666666666666666666
Q ss_pred CCCCcEEEccCCCC
Q 006427 471 CTLIKELYLAGNKI 484 (645)
Q Consensus 471 L~sL~~L~Ls~N~L 484 (645)
++.++++++-+|.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 66666666666654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.09 E-value=0.24 Score=30.22 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=6.4
Q ss_pred CCcEEEccCCcccccc
Q 006427 450 RLRVLDLSYNRIFRIG 465 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP 465 (645)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.16 E-value=0.25 Score=31.94 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=6.9
Q ss_pred CCEEEccCCcCCCCC
Q 006427 407 LRSVNLSNNFIVHIP 421 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip 421 (645)
|++|+|++|+|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 444444444444443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.78 E-value=0.54 Score=31.30 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=14.7
Q ss_pred CCCCCEEEccCCcCCCCCCCCC
Q 006427 404 FSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 404 L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
|++|+.|+|++|.|+.+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777766554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.78 E-value=0.54 Score=31.30 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=14.7
Q ss_pred CCCCCEEEccCCcCCCCCCCCC
Q 006427 404 FSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 404 L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
|++|+.|+|++|.|+.+|.+.|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777766554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.37 E-value=0.57 Score=28.58 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCCCC
Q 006427 406 SLRSVNLSNNFIVHI 420 (645)
Q Consensus 406 ~L~~LdLs~N~Lt~i 420 (645)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344455555544433
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.48 E-value=0.26 Score=54.12 Aligned_cols=79 Identities=28% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCCCcEEEccCCc-cccc--cCcCcCCCCCcEEEccCCC-CCCc---ccccCCCCCCEEECcCCCCCCccchhHhhhcCC
Q 006427 448 MTRLRVLDLSYNR-IFRI--GHGLSNCTLIKELYLAGNK-ISDI---EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQ 520 (645)
Q Consensus 448 L~sL~~LdLS~N~-Ls~L--P~~l~~L~sL~~L~Ls~N~-Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~ 520 (645)
+.+|+.|+|+++. ++.. ......+++|+.|.+.++. +++. .....++.|++|+|+.+....-..+.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4555555555554 3321 1111225566666655554 4332 223445556666666555432222333344455
Q ss_pred CCcEEE
Q 006427 521 SLLALN 526 (645)
Q Consensus 521 sL~~Ld 526 (645)
+|+.|.
T Consensus 322 ~l~~l~ 327 (482)
T KOG1947|consen 322 NLRELK 327 (482)
T ss_pred chhhhh
Confidence 544444
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.67 E-value=0.8 Score=50.31 Aligned_cols=127 Identities=30% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCCEEecCCC-CCCC--C-cCCCCCCCCcEEEccCC--ccccc----cCcCcCCCCCcEEEccCCC-CCCc--ccc-cC
Q 006427 427 KGLHTLNLSRN-KINT--I-EGLREMTRLRVLDLSYN--RIFRI----GHGLSNCTLIKELYLAGNK-ISDI--EGL-HR 492 (645)
Q Consensus 427 ~sL~~LdLs~N-~Ls~--l-p~L~~L~sL~~LdLS~N--~Ls~L----P~~l~~L~sL~~L~Ls~N~-Ls~l--~~l-~~ 492 (645)
+.|+.|.+..+ .+.. + +....++.|+.|+++++ .+... ......+.+|+.|+++.+. +++. ..+ ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 45555655555 3333 2 23455677777777763 22211 1234466899999999998 6664 333 33
Q ss_pred CCCCCEEECcCCC-CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 493 LLKLTVLDMSFNK-ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 493 L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
+++|+.|.+.++. +++. .+-.....++.|+.|+|+++... .+..+... ...+++|+.|...
T Consensus 268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~---~d~~l~~~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGL---TDSGLEAL-LKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccc---hHHHHHHH-HHhCcchhhhhhh
Confidence 8899999988887 5553 46666788999999999988764 23334444 4447766655433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.16 E-value=1.1 Score=29.82 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=14.2
Q ss_pred CCCCcEEEccCCccccccCc
Q 006427 448 MTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~ 467 (645)
+++|+.|+|++|+|+.||..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777655
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.16 E-value=1.1 Score=29.82 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=14.2
Q ss_pred CCCCcEEEccCCccccccCc
Q 006427 448 MTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~ 467 (645)
+++|+.|+|++|+|+.||..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.03 E-value=2.7 Score=42.71 Aligned_cols=78 Identities=31% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCcEEEccCCcccccc-CcCcCCCCCcEEEccCCCCCC---ccccc-CCCCCCEEECcCCC-CCCccchhHhhhcCCCCc
Q 006427 450 RLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISD---IEGLH-RLLKLTVLDMSFNK-ITTTKALGQLVANYQSLL 523 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~Ls~---l~~l~-~L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~ 523 (645)
.++.+|.++..|..+. ..+.+++.|+.|.+.++.--+ +..++ -.++|+.|+|++|. ||... + ..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L-~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-L-ACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-H-HHHHHhhhhH
Confidence 4566666666665322 225555556666655553211 11111 22455555555443 33321 1 3344555555
Q ss_pred EEEccC
Q 006427 524 ALNLLG 529 (645)
Q Consensus 524 ~LdLs~ 529 (645)
.|.|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555444
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=70.96 E-value=4.1 Score=54.56 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=37.7
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcC
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSL 548 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~ 548 (645)
||++|+|+.++. ..|..+++|+.|+|++|++.|.|....|+.++...
T Consensus 1 DLSnN~LstLp~--g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIEE--GICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccCh--HHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 578899988743 67888899999999999999988877777776544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.29 E-value=3.3 Score=47.53 Aligned_cols=59 Identities=32% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCcEEEccCCccccccC---cCcCCCCCcEEEccCC--CCCCcccccCC--CCCCEEECcCCCCCC
Q 006427 450 RLRVLDLSYNRIFRIGH---GLSNCTLIKELYLAGN--KISDIEGLHRL--LKLTVLDMSFNKITT 508 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~---~l~~L~sL~~L~Ls~N--~Ls~l~~l~~L--~~L~~LdLS~N~Ls~ 508 (645)
.+..|.|++|+|..|.. .-...++|+.|+|++| .+.....+..+ ..|+.|-|.+|.|..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34444455554443321 1123345566666665 33332222222 245566666666654
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.18 E-value=1.4 Score=44.72 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=50.9
Q ss_pred CCCCEEecCCCCCC--CCcCCCCCCCCcEEEccCCc-cc--cccCcCc-CCCCCcEEEccCC-CCCCc--ccccCCCCCC
Q 006427 427 KGLHTLNLSRNKIN--TIEGLREMTRLRVLDLSYNR-IF--RIGHGLS-NCTLIKELYLAGN-KISDI--EGLHRLLKLT 497 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls--~lp~L~~L~sL~~LdLS~N~-Ls--~LP~~l~-~L~sL~~L~Ls~N-~Ls~l--~~l~~L~~L~ 497 (645)
..++.+|-++..|. ++..+..++.|+.|.+.++. +. .|. .++ -.++|+.|+|++| +|++- ..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 35677777777776 34667788888888887774 22 121 122 3468999999987 46653 5677778888
Q ss_pred EEECcC
Q 006427 498 VLDMSF 503 (645)
Q Consensus 498 ~LdLS~ 503 (645)
.|.|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 777655
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.71 E-value=7.1 Score=26.65 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=9.3
Q ss_pred CCCCEEECcCCCCCCc
Q 006427 494 LKLTVLDMSFNKITTT 509 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~ 509 (645)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666666554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.06 E-value=6.1 Score=27.10 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.6
Q ss_pred CCcEEEccCCccccccC
Q 006427 450 RLRVLDLSYNRIFRIGH 466 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~ 466 (645)
.|+.|++++|+|+.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777664
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.71 E-value=8.2 Score=26.36 Aligned_cols=17 Identities=53% Similarity=0.620 Sum_probs=9.8
Q ss_pred CCCcEEEccCCCCCCcc
Q 006427 472 TLIKELYLAGNKISDIE 488 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l~ 488 (645)
.+|+.|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666665543
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=55.63 E-value=4.4 Score=45.20 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=94.3
Q ss_pred CCCCCCEEEccCC-cCCCCCC---CCCCCCCCEEecCCCCC-CCC--cC-CCCCCCCcEEEccCCc-ccccc--CcCcCC
Q 006427 403 HFSSLRSVNLSNN-FIVHIPT---GSMPKGLHTLNLSRNKI-NTI--EG-LREMTRLRVLDLSYNR-IFRIG--HGLSNC 471 (645)
Q Consensus 403 ~L~~L~~LdLs~N-~Lt~ip~---~~~~~sL~~LdLs~N~L-s~l--p~-L~~L~sL~~LdLS~N~-Ls~LP--~~l~~L 471 (645)
.+..+..+++..+ .++...- ...+..|+.|+.+++.- +.. .. ..+..+|++|-|+.++ |+... .--.++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 4455666776664 3443221 12236789999888743 332 22 3467899999998875 54322 113467
Q ss_pred CCCcEEEccCCCCCCc----ccccCCCCCCEEECcCCCCCCc---cchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHH
Q 006427 472 TLIKELYLAGNKISDI----EGLHRLLKLTVLDMSFNKITTT---KALGQLVANYQSLLALNLLGNPIQSNISDDQLRKA 544 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l----~~l~~L~~L~~LdLS~N~Ls~~---~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~ 544 (645)
+.|+.|++..+.+..- .--.+++.|+.|.|+++.+..- ..+...-..+..|..|.|+++++. ++..+.
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i---~d~~Le-- 420 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI---TDATLE-- 420 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc---hHHHHH--
Confidence 7899999988865432 2235678899999998875432 122233356778999999999884 443332
Q ss_pred HhcCCCCCceecccCCC
Q 006427 545 VCSLLPKLVYLNKQPIK 561 (645)
Q Consensus 545 vl~~L~~L~~Ld~~~Is 561 (645)
.+..+++|+.++..++.
T Consensus 421 ~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQ 437 (483)
T ss_pred HHhhCcccceeeeechh
Confidence 24456677776665543
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=48.80 E-value=11 Score=42.26 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=98.0
Q ss_pred CCCCCCCEEEccCCcC-CCCCCC---CCCCCCCEEecCCCC-CCCC--cCC-CCCCCCcEEEccCCccc---cccCcCcC
Q 006427 402 SHFSSLRSVNLSNNFI-VHIPTG---SMPKGLHTLNLSRNK-INTI--EGL-REMTRLRVLDLSYNRIF---RIGHGLSN 470 (645)
Q Consensus 402 ~~L~~L~~LdLs~N~L-t~ip~~---~~~~sL~~LdLs~N~-Ls~l--p~L-~~L~sL~~LdLS~N~Ls---~LP~~l~~ 470 (645)
..+..|+.|+.+++.. +...-. .-..+|++|-|+.++ |+.. ..+ .+...|+.|++....+. ++-.--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3567889999887543 321111 122789999999985 4432 222 35788999999888654 34333457
Q ss_pred CCCCcEEEccCCCCC-Cc------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006427 471 CTLIKELYLAGNKIS-DI------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 471 L~sL~~L~Ls~N~Ls-~l------~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
++.|+.|.|+++.+. +. ..-..+..|..|-|+++.++.-. .-..+..+++|+.++|-+++-...-+ + .
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~---i-~ 445 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEA---I-S 445 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhh---h-H
Confidence 889999999988643 22 12345677999999999876532 33567888999999988875432111 1 1
Q ss_pred HHhcCCCCCceecc
Q 006427 544 AVCSLLPKLVYLNK 557 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~ 557 (645)
.+...+|+++..-.
T Consensus 446 ~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 446 RFATHLPNIKVHAY 459 (483)
T ss_pred HHHhhCccceehhh
Confidence 23456888776544
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.54 E-value=11 Score=24.49 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=7.0
Q ss_pred CCCcEEEccCCccc
Q 006427 449 TRLRVLDLSYNRIF 462 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls 462 (645)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666666554
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=34.06 E-value=29 Score=23.66 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=7.2
Q ss_pred CCcEEEccCCccc
Q 006427 450 RLRVLDLSYNRIF 462 (645)
Q Consensus 450 sL~~LdLS~N~Ls 462 (645)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 93
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=30.31 E-value=30 Score=23.76 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCCCceeccc
Q 006427 540 QLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 540 ~l~~~vl~~L~~L~~Ld~~ 558 (645)
.||..++..+|+|++||..
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~ 21 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXX 21 (26)
T ss_pred cHHHHHHHHCCccceeccc
Confidence 5788999999999999974
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.18 E-value=67 Score=36.76 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=6.9
Q ss_pred CCEEECcCCCCCC
Q 006427 496 LTVLDMSFNKITT 508 (645)
Q Consensus 496 L~~LdLS~N~Ls~ 508 (645)
+++|.+..|++.+
T Consensus 356 ~q~l~~rdnnldg 368 (553)
T KOG4242|consen 356 VQVLLQRDNNLDG 368 (553)
T ss_pred eeEeecccccccc
Confidence 5555555555543
No 95
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.02 E-value=87 Score=23.51 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=18.7
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006427 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 405 ~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
.+|+.|.+.++.-..+..+.++.+|+.|.++
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 3566666654444455566666677777664
Done!