Query 006427
Match_columns 645
No_of_seqs 607 out of 3389
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 00:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 7.5E-23 2.6E-27 237.7 15.4 240 347-603 405-724 (768)
2 4fcg_A Uncharacterized protein 99.9 4.4E-22 1.5E-26 208.9 17.3 199 351-557 95-308 (328)
3 3rfs_A Internalin B, repeat mo 99.9 3.5E-21 1.2E-25 196.0 20.9 180 354-536 35-221 (272)
4 4fcg_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 209.8 12.3 207 358-575 79-299 (328)
5 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-20 6E-25 191.1 20.7 197 346-544 42-249 (285)
6 3zyi_A Leucine-rich repeat-con 99.9 5.5E-21 1.9E-25 208.0 16.7 206 344-558 83-298 (452)
7 3rgz_A Protein brassinosteroid 99.8 1.5E-21 5.1E-26 226.9 12.3 205 383-604 418-701 (768)
8 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-21 5.8E-26 202.8 11.1 227 351-597 67-306 (313)
9 3zyj_A Leucine-rich repeat-con 99.8 6E-21 2.1E-25 207.0 15.4 206 344-558 72-287 (440)
10 3oja_B Anopheles plasmodium-re 99.8 1.5E-20 5.1E-25 212.2 19.1 200 349-557 64-308 (597)
11 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-20 8.5E-25 189.9 18.8 192 359-558 31-233 (285)
12 3zyj_A Leucine-rich repeat-con 99.8 3.8E-20 1.3E-24 200.7 21.3 203 344-548 96-307 (440)
13 3zyi_A Leucine-rich repeat-con 99.8 4.5E-20 1.5E-24 200.8 21.2 201 344-546 107-316 (452)
14 1h6u_A Internalin H; cell adhe 99.8 3.2E-20 1.1E-24 192.9 19.0 188 356-557 37-224 (308)
15 3o6n_A APL1; leucine-rich repe 99.8 3.4E-20 1.2E-24 197.2 19.0 229 348-598 81-333 (390)
16 1ogq_A PGIP-2, polygalacturona 99.8 6.4E-22 2.2E-26 205.9 5.2 224 360-602 50-287 (313)
17 2z66_A Variable lymphocyte rec 99.8 2.2E-20 7.4E-25 192.0 16.6 204 346-557 38-255 (306)
18 3m19_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 182.7 21.1 182 361-546 15-206 (251)
19 3v47_A TOLL-like receptor 5B a 99.8 2.4E-20 8.1E-25 201.3 17.4 239 346-601 89-413 (455)
20 1p9a_G Platelet glycoprotein I 99.8 4.5E-20 1.5E-24 190.6 18.7 190 356-556 6-201 (290)
21 2o6q_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 183.8 21.9 175 361-537 38-222 (270)
22 2o6q_A Variable lymphocyte rec 99.8 2.3E-19 7.8E-24 182.2 21.9 188 361-558 17-213 (270)
23 4fmz_A Internalin; leucine ric 99.8 6.7E-20 2.3E-24 191.1 18.3 223 355-600 105-328 (347)
24 4eco_A Uncharacterized protein 99.8 3.1E-21 1.1E-25 219.9 7.8 233 352-604 198-477 (636)
25 2ft3_A Biglycan; proteoglycan, 99.8 3.9E-20 1.3E-24 192.8 15.2 196 348-557 66-271 (332)
26 4fmz_A Internalin; leucine ric 99.8 2.4E-19 8.2E-24 186.9 21.0 217 356-595 128-345 (347)
27 2id5_A Lingo-1, leucine rich r 99.8 3.9E-20 1.3E-24 201.7 15.5 233 351-600 47-313 (477)
28 1xku_A Decorin; proteoglycan, 99.8 5.1E-20 1.7E-24 191.5 15.6 170 361-534 53-230 (330)
29 1p9a_G Platelet glycoprotein I 99.8 3E-19 1E-23 184.4 20.7 185 360-547 31-222 (290)
30 1xku_A Decorin; proteoglycan, 99.8 1.3E-19 4.5E-24 188.4 18.0 237 344-596 60-306 (330)
31 3v47_A TOLL-like receptor 5B a 99.8 6.7E-20 2.3E-24 197.8 16.3 231 353-600 72-388 (455)
32 3o53_A Protein LRIM1, AGAP0063 99.8 4.6E-20 1.6E-24 191.8 14.1 235 345-603 43-283 (317)
33 3oja_A Leucine-rich immune mol 99.8 4.6E-20 1.6E-24 204.1 14.6 212 344-573 42-258 (487)
34 3t6q_A CD180 antigen; protein- 99.8 9.9E-20 3.4E-24 203.9 17.1 235 352-602 293-542 (606)
35 1h6u_A Internalin H; cell adhe 99.8 1.3E-19 4.3E-24 188.4 16.2 177 355-538 58-234 (308)
36 4ecn_A Leucine-rich repeat pro 99.8 1.1E-19 3.6E-24 215.0 17.6 232 355-604 568-826 (876)
37 2id5_A Lingo-1, leucine rich r 99.8 9.2E-20 3.2E-24 198.7 15.8 231 351-598 71-335 (477)
38 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 210.5 13.7 240 346-604 315-586 (636)
39 1o6v_A Internalin A; bacterial 99.8 2.2E-19 7.4E-24 196.2 18.4 217 356-597 173-389 (466)
40 3rfs_A Internalin B, repeat mo 99.8 1.3E-19 4.6E-24 184.3 15.0 223 361-608 20-247 (272)
41 1h6t_A Internalin B; cell adhe 99.8 4.9E-20 1.7E-24 190.2 11.7 202 355-565 41-242 (291)
42 3t6q_A CD180 antigen; protein- 99.8 2.4E-19 8.4E-24 200.7 18.3 237 346-600 311-564 (606)
43 2z62_A TOLL-like receptor 4, v 99.8 4.8E-19 1.7E-23 179.6 18.7 126 361-486 29-163 (276)
44 4ecn_A Leucine-rich repeat pro 99.8 2.3E-20 7.9E-25 220.6 10.1 208 383-605 491-718 (876)
45 1o6v_A Internalin A; bacterial 99.8 2.2E-19 7.7E-24 196.1 17.2 194 383-600 177-370 (466)
46 3bz5_A Internalin-J, INLJ; leu 99.8 7.4E-19 2.5E-23 193.0 20.5 222 355-601 59-282 (457)
47 3o6n_A APL1; leucine-rich repe 99.8 1E-18 3.4E-23 185.9 20.8 207 346-567 103-353 (390)
48 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 184.5 15.2 191 353-545 71-273 (306)
49 2z80_A TOLL-like receptor 2, v 99.8 1E-19 3.5E-24 191.3 12.5 213 349-570 65-318 (353)
50 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-19 8.6E-24 186.7 15.3 222 360-602 54-283 (332)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.1E-19 1.8E-23 197.5 18.3 94 469-570 350-445 (562)
52 2z62_A TOLL-like receptor 4, v 99.8 4.2E-19 1.4E-23 180.0 15.8 191 345-537 37-241 (276)
53 3oja_B Anopheles plasmodium-re 99.8 1.3E-18 4.4E-23 196.4 21.3 207 346-567 109-359 (597)
54 3cvr_A Invasion plasmid antige 99.8 9.5E-19 3.3E-23 198.1 20.0 189 361-578 60-255 (571)
55 2z7x_B TOLL-like receptor 1, v 99.8 4.7E-19 1.6E-23 195.0 16.6 94 469-570 321-416 (520)
56 3m19_A Variable lymphocyte rec 99.8 2.6E-18 8.8E-23 172.6 20.4 165 383-557 14-186 (251)
57 3bz5_A Internalin-J, INLJ; leu 99.8 3.7E-18 1.3E-22 187.5 23.2 167 356-535 81-248 (457)
58 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 172.9 18.1 174 384-561 20-201 (229)
59 3oja_A Leucine-rich immune mol 99.8 8.4E-20 2.9E-24 202.0 8.9 217 359-600 33-255 (487)
60 2z80_A TOLL-like receptor 2, v 99.8 5.2E-19 1.8E-23 185.8 14.0 230 360-602 52-295 (353)
61 1jl5_A Outer protein YOPM; leu 99.8 3.6E-18 1.2E-22 187.4 21.1 144 355-508 148-291 (454)
62 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-19 7.1E-24 201.2 10.6 229 355-602 302-539 (606)
63 1h6t_A Internalin B; cell adhe 99.8 5.9E-19 2E-23 182.1 13.2 181 364-558 28-208 (291)
64 3o53_A Protein LRIM1, AGAP0063 99.8 8.3E-20 2.9E-24 189.9 6.7 222 354-600 28-255 (317)
65 2xwt_C Thyrotropin receptor; s 99.8 7.1E-19 2.4E-23 174.9 12.9 187 361-558 32-234 (239)
66 1xeu_A Internalin C; cellular 99.8 2.2E-19 7.4E-24 182.9 9.3 198 358-565 17-214 (263)
67 1ziw_A TOLL-like receptor 3; i 99.8 2.4E-18 8.2E-23 195.5 18.7 243 349-603 38-349 (680)
68 1wwl_A Monocyte differentiatio 99.8 3.6E-19 1.2E-23 184.6 9.9 214 362-597 65-310 (312)
69 1jl5_A Outer protein YOPM; leu 99.8 3.1E-18 1.1E-22 187.9 17.5 161 360-534 111-271 (454)
70 1m9s_A Internalin B; cell inva 99.8 2.3E-18 7.9E-23 196.1 17.0 174 355-534 38-211 (605)
71 3vq2_A TLR4, TOLL-like recepto 99.8 2.5E-18 8.5E-23 192.5 16.0 193 356-557 346-552 (606)
72 2z63_A TOLL-like receptor 4, v 99.8 6.2E-19 2.1E-23 195.1 10.9 223 361-601 305-536 (570)
73 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-17 7.4E-22 188.7 23.8 193 358-577 99-308 (622)
74 2v9t_B SLIT homolog 2 protein 99.8 6.1E-18 2.1E-22 167.6 16.7 156 386-545 14-177 (220)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-18 1E-22 191.3 15.3 122 360-484 52-181 (562)
76 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-18 1.5E-22 194.5 16.4 206 358-601 79-302 (622)
77 2z81_A CD282 antigen, TOLL-lik 99.8 8.9E-18 3E-22 185.5 18.2 149 383-537 361-514 (549)
78 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-17 4.8E-22 189.2 20.3 232 360-603 25-268 (680)
79 2o6s_A Variable lymphocyte rec 99.8 6.6E-18 2.2E-22 164.4 15.1 145 387-534 11-162 (208)
80 2z7x_B TOLL-like receptor 1, v 99.8 1.6E-18 5.5E-23 190.7 11.9 122 360-484 21-150 (520)
81 1m9s_A Internalin B; cell inva 99.8 2.2E-18 7.7E-23 196.2 13.3 184 361-558 22-205 (605)
82 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.9E-22 165.6 16.5 156 386-545 14-178 (220)
83 4glp_A Monocyte differentiatio 99.7 2.8E-18 9.4E-23 177.6 11.6 171 359-534 90-286 (310)
84 3cvr_A Invasion plasmid antige 99.7 1.5E-17 5.1E-22 188.3 18.2 163 360-539 80-249 (571)
85 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-18 4.2E-23 204.4 9.7 180 353-534 283-518 (844)
86 2o6s_A Variable lymphocyte rec 99.7 1.3E-17 4.4E-22 162.4 15.1 166 363-539 10-184 (208)
87 2z63_A TOLL-like receptor 4, v 99.7 1.1E-18 3.7E-23 193.2 8.2 192 357-557 322-525 (570)
88 1wwl_A Monocyte differentiatio 99.7 3.4E-18 1.2E-22 177.3 11.5 193 358-566 93-309 (312)
89 4ezg_A Putative uncharacterize 99.7 6.8E-18 2.3E-22 163.7 12.4 148 383-534 44-195 (197)
90 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.7E-22 176.6 14.7 172 363-538 21-207 (361)
91 4glp_A Monocyte differentiatio 99.7 3.5E-18 1.2E-22 176.8 9.3 153 383-538 91-268 (310)
92 2z81_A CD282 antigen, TOLL-lik 99.7 4.6E-17 1.6E-21 179.8 17.4 198 356-570 306-514 (549)
93 4g8a_A TOLL-like receptor 4; l 99.7 4.9E-17 1.7E-21 180.8 15.8 153 380-534 49-215 (635)
94 2xwt_C Thyrotropin receptor; s 99.7 3.6E-17 1.2E-21 162.6 12.7 181 346-531 41-237 (239)
95 1xeu_A Internalin C; cellular 99.7 4.8E-17 1.6E-21 165.6 13.6 152 355-509 36-187 (263)
96 3j0a_A TOLL-like receptor 5; m 99.7 3.3E-17 1.1E-21 192.3 13.0 91 494-601 266-356 (844)
97 3goz_A Leucine-rich repeat-con 99.7 1.7E-17 5.8E-22 175.5 8.9 247 347-598 9-299 (362)
98 4g8a_A TOLL-like receptor 4; l 99.7 2.6E-16 8.9E-21 174.9 17.6 189 357-547 394-594 (635)
99 4ezg_A Putative uncharacterize 99.7 7.6E-17 2.6E-21 156.2 11.5 152 355-508 39-195 (197)
100 2ca6_A RAN GTPase-activating p 99.7 3E-17 1E-21 174.5 8.4 239 352-599 24-319 (386)
101 3e6j_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 153.6 17.5 146 362-509 21-174 (229)
102 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.5E-22 172.0 5.7 233 353-604 61-314 (336)
103 1dce_A Protein (RAB geranylger 99.7 4E-19 1.4E-23 200.8 -8.0 192 357-557 346-567 (567)
104 2xot_A Amphoterin-induced prot 99.7 5.8E-16 2E-20 164.1 15.0 150 385-539 20-181 (361)
105 2v9t_B SLIT homolog 2 protein 99.7 1.3E-15 4.4E-20 150.8 16.2 146 363-510 14-168 (220)
106 2ca6_A RAN GTPase-activating p 99.7 2.3E-17 8E-22 175.3 3.5 201 356-557 56-310 (386)
107 3goz_A Leucine-rich repeat-con 99.6 8.3E-17 2.8E-21 170.3 7.1 220 354-575 44-306 (362)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-15 4.8E-20 150.6 15.2 142 407-557 13-160 (220)
109 1w8a_A SLIT protein; signaling 99.6 1.2E-15 3.9E-20 147.9 14.0 133 408-543 11-149 (192)
110 2wfh_A SLIT homolog 2 protein 99.6 4.6E-15 1.6E-19 144.2 14.2 137 408-547 13-153 (193)
111 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.6E-22 162.4 -6.4 141 427-568 48-192 (198)
112 1z7x_W Ribonuclease inhibitor; 99.6 2.7E-16 9.1E-21 169.6 3.7 181 353-533 49-269 (461)
113 4ay9_X Follicle-stimulating ho 99.6 1E-14 3.5E-19 153.7 15.3 200 346-557 40-253 (350)
114 1z7x_W Ribonuclease inhibitor; 99.6 1.8E-16 6.1E-21 171.0 1.6 155 353-507 106-297 (461)
115 4b8c_D Glucose-repressible alc 99.6 7.5E-16 2.6E-20 178.7 5.7 150 388-539 206-360 (727)
116 4ay9_X Follicle-stimulating ho 99.6 4.8E-15 1.6E-19 156.2 11.2 190 360-557 30-233 (350)
117 2ast_B S-phase kinase-associat 99.6 8.8E-16 3E-20 159.0 5.4 193 361-560 48-257 (336)
118 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4E-20 145.2 5.6 107 401-507 15-126 (176)
119 2o6r_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 134.7 15.3 128 407-537 9-141 (177)
120 2ell_A Acidic leucine-rich nuc 99.6 9.8E-15 3.4E-19 137.2 10.4 130 405-534 24-161 (168)
121 1w8a_A SLIT protein; signaling 99.5 3.7E-14 1.3E-18 137.2 14.1 123 386-510 11-142 (192)
122 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.2E-19 138.2 8.7 134 426-564 18-154 (176)
123 4b8c_D Glucose-repressible alc 99.5 7.8E-15 2.7E-19 170.2 7.8 149 383-538 173-334 (727)
124 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 131.3 9.9 126 427-557 17-147 (149)
125 2ell_A Acidic leucine-rich nuc 99.5 2E-14 6.8E-19 135.1 8.4 128 382-509 23-162 (168)
126 2o6r_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 127.8 15.8 124 385-509 9-139 (177)
127 2je0_A Acidic leucine-rich nuc 99.5 1.1E-13 3.9E-18 127.4 11.3 127 403-529 15-149 (149)
128 2wfh_A SLIT homolog 2 protein 99.5 3.2E-13 1.1E-17 131.2 13.8 121 386-509 13-141 (193)
129 1dce_A Protein (RAB geranylger 99.5 1.4E-14 4.7E-19 163.7 4.6 172 351-527 363-567 (567)
130 3sb4_A Hypothetical leucine ri 99.4 1.9E-12 6.4E-17 135.1 11.8 188 359-557 48-328 (329)
131 1ds9_A Outer arm dynein; leuci 99.4 7.3E-15 2.5E-19 142.3 -6.5 134 394-534 36-186 (198)
132 3g39_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 119.5 13.0 105 429-537 11-119 (170)
133 2r9u_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 119.7 12.9 115 430-548 15-134 (174)
134 3g39_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 118.2 12.4 102 407-509 11-117 (170)
135 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 117.6 12.7 101 408-509 15-120 (174)
136 2ifg_A High affinity nerve gro 99.2 6.4E-11 2.2E-15 123.7 12.7 95 410-507 13-116 (347)
137 3ogk_B Coronatine-insensitive 99.2 2.8E-11 9.4E-16 134.6 10.2 153 401-557 266-443 (592)
138 3ogk_B Coronatine-insensitive 99.2 1.9E-11 6.4E-16 135.9 6.8 170 357-528 161-350 (592)
139 3sb4_A Hypothetical leucine ri 99.2 1.4E-10 4.7E-15 120.9 12.4 164 359-527 100-328 (329)
140 3un9_A NLR family member X1; l 99.1 2.6E-12 8.8E-17 137.8 -1.3 156 379-534 68-253 (372)
141 2ifg_A High affinity nerve gro 99.1 1.8E-10 6E-15 120.3 9.8 101 387-487 12-118 (347)
142 2p1m_B Transport inhibitor res 99.1 5.3E-11 1.8E-15 132.1 5.3 167 358-527 128-345 (594)
143 4fdw_A Leucine rich hypothetic 99.1 1.3E-09 4.4E-14 118.0 14.9 179 348-534 168-359 (401)
144 2p1m_B Transport inhibitor res 99.0 2.4E-10 8.1E-15 126.9 8.6 128 427-557 289-439 (594)
145 3un9_A NLR family member X1; l 99.0 1.2E-11 4.1E-16 132.6 -3.1 173 359-533 71-283 (372)
146 4fdw_A Leucine rich hypothetic 98.9 9.4E-09 3.2E-13 111.2 15.8 193 349-557 125-330 (401)
147 3rw6_A Nuclear RNA export fact 98.7 4.2E-09 1.4E-13 108.5 4.1 116 445-562 137-263 (267)
148 2ra8_A Uncharacterized protein 98.5 6.4E-08 2.2E-12 103.6 4.2 131 403-534 170-321 (362)
149 2ra8_A Uncharacterized protein 98.4 1.2E-07 4E-12 101.5 5.1 173 354-531 133-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.6E-12 91.7 4.0 87 446-532 62-163 (185)
151 1io0_A Tropomodulin; LRR prote 98.2 1.6E-07 5.6E-12 90.4 -0.4 82 427-508 65-165 (185)
152 3rw6_A Nuclear RNA export fact 98.0 4.1E-06 1.4E-10 86.2 5.7 81 446-526 167-257 (267)
153 4fs7_A Uncharacterized protein 97.7 0.00037 1.3E-08 74.1 14.8 169 353-530 201-376 (394)
154 4fs7_A Uncharacterized protein 97.7 0.00028 9.7E-09 74.9 13.0 139 404-557 229-373 (394)
155 4gt6_A Cell surface protein; l 97.6 0.0016 5.6E-08 69.1 18.0 101 445-557 261-364 (394)
156 4gt6_A Cell surface protein; l 97.5 0.0017 5.7E-08 69.0 15.7 58 468-529 261-320 (394)
157 4h09_A Hypothetical leucine ri 97.4 0.00092 3.2E-08 70.2 12.7 98 401-501 236-340 (379)
158 3e4g_A ATP synthase subunit S, 97.4 0.00013 4.6E-09 70.4 5.0 100 450-553 62-170 (176)
159 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00018 6.2E-09 70.7 5.4 63 468-530 66-136 (197)
160 4h09_A Hypothetical leucine ri 97.2 0.0022 7.4E-08 67.3 12.2 125 400-530 212-343 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00098 3.4E-08 65.5 7.1 106 427-532 41-169 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.0023 8E-08 58.2 8.9 70 476-548 12-83 (130)
163 3e4g_A ATP synthase subunit S, 96.9 0.00074 2.5E-08 65.2 4.9 92 463-562 52-151 (176)
164 3rfe_A Platelet glycoprotein I 96.4 0.0048 1.7E-07 56.1 6.7 34 451-484 33-67 (130)
165 2lz0_A Uncharacterized protein 20.8 1E+02 0.0035 26.1 4.5 46 436-482 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=7.5e-23 Score=237.74 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=204.0
Q ss_pred CCCCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCC
Q 006427 347 ETGKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTG 423 (645)
Q Consensus 347 ~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~ 423 (645)
.+.+.+|..+.++++|+.|+|++|.+.+..+. ..-.++|+.|+|++|.++ .+| .+..+++|+.|+|++|.+++..+.
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 33446778899999999999999988754332 222378999999999998 566 688999999999999999976665
Q ss_pred CCC--CCCCEEecCCCCCCC-Cc-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc-c---------
Q 006427 424 SMP--KGLHTLNLSRNKINT-IE-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI-E--------- 488 (645)
Q Consensus 424 ~~~--~sL~~LdLs~N~Ls~-lp-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l-~--------- 488 (645)
.+. ++|++|+|++|++++ +| .++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++. +
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 554 899999999999995 44 4889999999999999999 7888899999999999999988642 1
Q ss_pred --------------------------------------------------------------cccCCCCCCEEECcCCCC
Q 006427 489 --------------------------------------------------------------GLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 489 --------------------------------------------------------------~l~~L~~L~~LdLS~N~L 506 (645)
.+..+.+|+.|+|++|+|
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 133457899999999999
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccc
Q 006427 507 TTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQ 586 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~ 586 (645)
++. +|..++.++.|+.|+|++|.++|.+|.. ++.+++|+.||. +.|++.|.+|..+.. ...++
T Consensus 645 ~g~--ip~~l~~l~~L~~L~Ls~N~l~g~ip~~------l~~L~~L~~LdL---s~N~l~g~ip~~l~~------l~~L~ 707 (768)
T 3rgz_A 645 SGY--IPKEIGSMPYLFILNLGHNDISGSIPDE------VGDLRGLNILDL---SSNKLDGRIPQAMSA------LTMLT 707 (768)
T ss_dssp BSC--CCGGGGGCTTCCEEECCSSCCCSCCCGG------GGGCTTCCEEEC---CSSCCEECCCGGGGG------CCCCS
T ss_pred ccc--CCHHHhccccCCEEeCcCCccCCCCChH------HhCCCCCCEEEC---CCCcccCcCChHHhC------CCCCC
Confidence 987 8999999999999999999999999998 889999999986 789999999988765 36788
Q ss_pred cccccccCCccCccCCC
Q 006427 587 RKAVKRTGRSGSLPSSN 603 (645)
Q Consensus 587 ~~~l~~n~lSG~iPss~ 603 (645)
.++++.|+++|.||...
T Consensus 708 ~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp EEECCSSEEEEECCSSS
T ss_pred EEECcCCcccccCCCch
Confidence 99999999999999764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.4e-22 Score=208.93 Aligned_cols=199 Identities=16% Similarity=0.147 Sum_probs=169.1
Q ss_pred CChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCC-CCCCCC---
Q 006427 351 SPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVH-IPTGSM--- 425 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~-ip~~~~--- 425 (645)
.+|..+.++.+|+.|+|++|.+..++....-.++|++|+|++|.|+.+| .+..+++|++|+|++|.+.+ +|....
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3455688899999999999998855443333478999999999999998 68899999999999976654 444321
Q ss_pred -------CCCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--ccccCCCC
Q 006427 426 -------PKGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLK 495 (645)
Q Consensus 426 -------~~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~ 495 (645)
.++|++|+|++|.|+.+|. +..+++|++|+|++|.|+.+|..+..+++|++|+|++|.+.+. ..+..+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 4789999999999998864 8899999999999999999988899999999999999988775 56888999
Q ss_pred CCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 496 LTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 496 L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
|+.|+|++|.+.+. +|..+..+++|+.|+|++|++.+.+|.. ++.+++|+.++.
T Consensus 255 L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~iP~~------l~~L~~L~~l~l 308 (328)
T 4fcg_A 255 LKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPSL------IAQLPANCIILV 308 (328)
T ss_dssp CCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTCTTCCCCCGG------GGGSCTTCEEEC
T ss_pred CCEEECCCCCchhh--cchhhhcCCCCCEEeCCCCCchhhccHH------HhhccCceEEeC
Confidence 99999999998876 8888999999999999999999999988 888999888875
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.5e-21 Score=196.02 Aligned_cols=180 Identities=20% Similarity=0.306 Sum_probs=147.3
Q ss_pred hhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCE
Q 006427 354 RSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHT 431 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~ 431 (645)
..+.++.+|+.|+++++.+.....+..+ ++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+++..+. ++|++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYL-PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGC-TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccccceeeeeeCCCCcccccccccC-CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3466788889999998888766554433 78889999999988888888889999999999999888876553 78999
Q ss_pred EecCCCCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCC
Q 006427 432 LNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 432 LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~L 506 (645)
|+|++|.|++++. +..+++|++|+|++|.|+.++.. +..+++|+.|+|++|.|++++ .+..+++|++|+|++|.|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999999888754 78888999999999998877765 678889999999999988873 367888999999999998
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCC
Q 006427 507 TTTKALGQLVANYQSLLALNLLGNPIQSNI 536 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~i 536 (645)
+++ .+..+..+++|+.|+|++|++.|.+
T Consensus 194 ~~~--~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 194 KSV--PDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SCC--CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred Ccc--CHHHHhCCcCCCEEEccCCCccccC
Confidence 886 4466788899999999999887643
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.3e-22 Score=209.85 Aligned_cols=207 Identities=20% Similarity=0.206 Sum_probs=176.3
Q ss_pred cccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCC-CCCCCEEecC
Q 006427 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSM-PKGLHTLNLS 435 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~-~~sL~~LdLs 435 (645)
...+++.|+|++|.+..++....-.++|++|+|++|.|+.+| .++.+++|++|+|++|.|+.+|.... .++|++|+|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 347899999999999866553333479999999999999998 68999999999999999998865432 2899999999
Q ss_pred CCCCCC-CcC-CC---------CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcC
Q 006427 436 RNKINT-IEG-LR---------EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSF 503 (645)
Q Consensus 436 ~N~Ls~-lp~-L~---------~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~ 503 (645)
+|.+.+ +|. +. .+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+++ +.+..+++|++|+|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 976554 443 33 49999999999999999998899999999999999999998 5689999999999999
Q ss_pred CCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHH
Q 006427 504 NKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAK 575 (645)
Q Consensus 504 N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~ 575 (645)
|.+.+. +|..++.+++|+.|+|++|.+.+.+|.. +..+++|++|+. ..|.+.+.+|..+..
T Consensus 239 n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~------~~~l~~L~~L~L---~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 239 CTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLD------IHRLTQLEKLDL---RGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTT------GGGCTTCCEEEC---TTCTTCCCCCGGGGG
T ss_pred Ccchhh--hHHHhcCCCCCCEEECCCCCchhhcchh------hhcCCCCCEEeC---CCCCchhhccHHHhh
Confidence 999886 7888999999999999999999999987 788999999986 566777777776654
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.8e-20 Score=191.05 Aligned_cols=197 Identities=18% Similarity=0.208 Sum_probs=156.7
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCC-CCcCC--CCCCCCCCCEEEccCCcCCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIG-LKAIP--TISHFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~-Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip 421 (645)
..+...++..+..+++|+.|+|++|.+...... ..-.++|++|+|++|. ++.++ .+..+++|+.|+|++|.++.++
T Consensus 42 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 121 (285)
T 1ozn_A 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC
Confidence 334445556678888999999999888765322 2223788999999997 88774 5888899999999999998887
Q ss_pred CCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCC
Q 006427 422 TGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLL 494 (645)
Q Consensus 422 ~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~ 494 (645)
+..+. ++|++|+|++|.|+.++. +..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|+++ ..+..++
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 76554 789999999999988753 78889999999999999988765 88889999999999998876 4588888
Q ss_pred CCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHH
Q 006427 495 KLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKA 544 (645)
Q Consensus 495 ~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~ 544 (645)
+|+.|+|++|.|+++ .+..+..+++|+.|+|++|++.+.++...+..+
T Consensus 202 ~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 202 RLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TCCEEECCSSCCSCC--CHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred cccEeeCCCCcCCcC--CHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 999999999999886 446688899999999999999887766544333
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=5.5e-21 Score=208.01 Aligned_cols=206 Identities=24% Similarity=0.269 Sum_probs=174.4
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~i 420 (645)
....+....+..+.++++|+.|+|++|.+.....-. .-.++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+.+
T Consensus 83 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 83 MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence 345566666778899999999999999988764322 22378999999999999988 488999999999999999999
Q ss_pred CCCCCC--CCCCEEecCC-CCCCCCc--CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--ccccCC
Q 006427 421 PTGSMP--KGLHTLNLSR-NKINTIE--GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EGLHRL 493 (645)
Q Consensus 421 p~~~~~--~sL~~LdLs~-N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L 493 (645)
+...|. ++|+.|+|++ |.+..++ .|..+++|++|+|++|.|+.+| .+..+++|+.|+|++|.|+++ ..|..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc
Confidence 887665 8999999999 5666664 3889999999999999999986 688999999999999999987 468999
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
++|+.|+|++|+|+++ .+..+..+++|+.|+|++|.|++ +|.. .+..+++|+.|+..
T Consensus 242 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~-~~~~-----~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLI--ERNAFDGLASLVELNLAHNNLSS-LPHD-----LFTPLRYLVELHLH 298 (452)
T ss_dssp TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCSC-CCTT-----SSTTCTTCCEEECC
T ss_pred cCCCEEEeCCCcCceE--CHHHhcCCCCCCEEECCCCcCCc-cChH-----HhccccCCCEEEcc
Confidence 9999999999999987 56778999999999999999987 4443 25678899988764
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.5e-21 Score=226.85 Aligned_cols=205 Identities=23% Similarity=0.246 Sum_probs=126.7
Q ss_pred CCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCC-c-CCCCCCCCcEEEc
Q 006427 383 SSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-E-GLREMTRLRVLDL 456 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~l-p-~L~~L~sL~~LdL 456 (645)
++|+.|+|++|.++ .+| .++.+++|+.|+|++|.+++..+..+. ++|++|+|++|.+++. + .+..+++|++|+|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 45556666666555 334 455566666666666666543333332 5666666666666642 3 3666666666666
Q ss_pred cCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHh------------------
Q 006427 457 SYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQL------------------ 515 (645)
Q Consensus 457 S~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~------------------ 515 (645)
++|.++ .+|..++.+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. +|..
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT--IPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB--CCGGGGTTTTCBCCSTTCSCEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc--CChHHhcccchhhhhccccccc
Confidence 666666 5555566666666666666666643 4466666666676666666542 2222
Q ss_pred ----------------------------------------------------hhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006427 516 ----------------------------------------------------VANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 516 ----------------------------------------------------l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
+..+++|+.|+|++|.++|.+|..
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~---- 651 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE---- 651 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG----
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH----
Confidence 223456667777777777777766
Q ss_pred HHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCccCCCC
Q 006427 544 AVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
++.++.|+.|+. +.|.+.|.+|..+.. ...++.+++++|+++|.||....
T Consensus 652 --l~~l~~L~~L~L---s~N~l~g~ip~~l~~------L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 652 --IGSMPYLFILNL---GHNDISGSIPDEVGD------LRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp --GGGCTTCCEEEC---CSSCCCSCCCGGGGG------CTTCCEEECCSSCCEECCCGGGG
T ss_pred --HhccccCCEEeC---cCCccCCCCChHHhC------CCCCCEEECCCCcccCcCChHHh
Confidence 666777777665 667777777766654 25677778888888888886653
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.7e-21 Score=202.77 Aligned_cols=227 Identities=18% Similarity=0.156 Sum_probs=185.5
Q ss_pred CChhhhhcccCCCEEecCC-ccccccch-hhccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCCCCC
Q 006427 351 SPARSTAHLTRRSEINLSE-EILHANSV-IRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP 426 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~-n~l~~~~~-l~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~ 426 (645)
.+|..+.++++|+.|+|++ |.+.+..+ ...-.++|++|+|++|.|+ .+| .+..+++|++|+|++|.|++..+..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 5667899999999999994 77764322 2223388999999999998 677 689999999999999999965555443
Q ss_pred --CCCCEEecCCCCCC-CCc-CCCCCC-CCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCE
Q 006427 427 --KGLHTLNLSRNKIN-TIE-GLREMT-RLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTV 498 (645)
Q Consensus 427 --~sL~~LdLs~N~Ls-~lp-~L~~L~-sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~ 498 (645)
++|++|+|++|.|+ .++ .+..++ .|++|+|++|.++ .+|..+..+. |++|+|++|.|++. ..+..+++|+.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 89999999999998 444 588887 9999999999999 7777788887 99999999999865 56889999999
Q ss_pred EECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHh
Q 006427 499 LDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVL 578 (645)
Q Consensus 499 LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l 578 (645)
|+|++|.+++. +|. +..+++|++|+|++|.|++.+|.. +..+++|++|+. ..|.+.+.+|.. .
T Consensus 226 L~L~~N~l~~~--~~~-~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~L---s~N~l~~~ip~~-~---- 288 (313)
T 1ogq_A 226 IHLAKNSLAFD--LGK-VGLSKNLNGLDLRNNRIYGTLPQG------LTQLKFLHSLNV---SFNNLCGEIPQG-G---- 288 (313)
T ss_dssp EECCSSEECCB--GGG-CCCCTTCCEEECCSSCCEECCCGG------GGGCTTCCEEEC---CSSEEEEECCCS-T----
T ss_pred EECCCCceeee--cCc-ccccCCCCEEECcCCcccCcCChH------HhcCcCCCEEEC---cCCcccccCCCC-c----
Confidence 99999999875 444 788999999999999999989987 788999999986 677888877754 1
Q ss_pred cCCCCccccccccccC-Ccc
Q 006427 579 GNSSQSSQRKAVKRTG-RSG 597 (645)
Q Consensus 579 ~~~~~sl~~~~l~~n~-lSG 597 (645)
....+....+.+|. +.|
T Consensus 289 --~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 --NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp --TGGGSCGGGTCSSSEEES
T ss_pred --cccccChHHhcCCCCccC
Confidence 12456677777776 555
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=207.00 Aligned_cols=206 Identities=23% Similarity=0.279 Sum_probs=175.5
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchhhc-cCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRS-LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~-L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~i 420 (645)
....+....+..+.++.+|+.|+|++|.+..+..-.. -.++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+
T Consensus 72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151 (440)
T ss_dssp CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE
T ss_pred cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc
Confidence 3455666667788999999999999999887653222 2388999999999999988 489999999999999999999
Q ss_pred CCCCCC--CCCCEEecCCC-CCCCCc--CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--ccccCC
Q 006427 421 PTGSMP--KGLHTLNLSRN-KINTIE--GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EGLHRL 493 (645)
Q Consensus 421 p~~~~~--~sL~~LdLs~N-~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L 493 (645)
+...|. ++|+.|+|++| .+..++ .|..+++|++|+|++|.|+.+| .+..+++|+.|+|++|.|+++ ..|..+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccC
Confidence 887665 89999999994 566664 4889999999999999999997 588999999999999999987 568999
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
++|+.|+|++|+|+++ .+..+..+++|+.|+|++|.|++ +|.. .+..+++|+.|+..
T Consensus 231 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~-~~~~-----~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLTL-LPHD-----LFTPLHHLERIHLH 287 (440)
T ss_dssp TTCCEEECTTCCCCEE--CTTSSTTCTTCCEEECTTSCCCC-CCTT-----TTSSCTTCCEEECC
T ss_pred ccCCEEECCCCceeEE--ChhhhcCCCCCCEEECCCCCCCc-cChh-----HhccccCCCEEEcC
Confidence 9999999999999987 45778999999999999999997 4443 26778999988764
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=212.19 Aligned_cols=200 Identities=21% Similarity=0.254 Sum_probs=118.1
Q ss_pred CCCChhhhhcccCCCEEecCCccccccch-hhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCC
Q 006427 349 GKSPARSTAHLTRRSEINLSEEILHANSV-IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 349 ~~~~~~sl~~L~~L~~LdLS~n~l~~~~~-l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
...++..+..+++|+.|+|++|.+..... .....++|+.|+|++|.|+.++ .|+.+++|++|+|++|.|+.+++..|
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence 34444445556666666666665554432 1112255666666666666554 24556666666666666665555443
Q ss_pred C--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-Cc-------------------------------
Q 006427 426 P--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LS------------------------------- 469 (645)
Q Consensus 426 ~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~------------------------------- 469 (645)
. ++|++|+|++|.|++++ .|..+++|++|+|++|.|+.++.. +.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 2 55666666666665542 255555666666666555543211 10
Q ss_pred ------CCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006427 470 ------NCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 470 ------~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
..++|+.|+|++|.|+++..+..+++|+.|+|++|.|+++ .|..+..+++|+.|+|++|.+.+ +|..
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~-l~~~---- 296 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQRLERLYISNNRLVA-LNLY---- 296 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE--ESGGGTTCSSCCEEECTTSCCCE-EECS----
T ss_pred cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC--CHHHhcCccCCCEEECCCCCCCC-CCcc----
Confidence 1134666666666666666677777888888888887775 56677777888888888887776 4443
Q ss_pred HHhcCCCCCceecc
Q 006427 544 AVCSLLPKLVYLNK 557 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~ 557 (645)
+..+++|+.|+.
T Consensus 297 --~~~l~~L~~L~L 308 (597)
T 3oja_B 297 --GQPIPTLKVLDL 308 (597)
T ss_dssp --SSCCTTCCEEEC
T ss_pred --cccCCCCcEEEC
Confidence 455777777775
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.5e-20 Score=189.94 Aligned_cols=192 Identities=19% Similarity=0.277 Sum_probs=165.6
Q ss_pred ccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCc-CCCCCCCCCC--CCCCEE
Q 006427 359 LTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNF-IVHIPTGSMP--KGLHTL 432 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~-Lt~ip~~~~~--~sL~~L 432 (645)
..+|+.|+|++|.+.....- ..-.++|++|+|++|.|+.++ .+..+++|+.|+|++|. ++.+++..+. ++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 35899999999999876532 222378999999999999874 68999999999999997 8888776654 899999
Q ss_pred ecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCC
Q 006427 433 NLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 433 dLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls 507 (645)
+|++|.++.++ .+..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999874 388999999999999999988765 889999999999999999873 4889999999999999999
Q ss_pred CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 508 TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 508 ~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
++ .|..+..+++|+.|+|++|.+.+ ++.. .+..+++|++|+..
T Consensus 191 ~~--~~~~~~~l~~L~~L~l~~n~l~~-~~~~-----~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 191 HV--HPHAFRDLGRLMTLYLFANNLSA-LPTE-----ALAPLRALQYLRLN 233 (285)
T ss_dssp EE--CTTTTTTCTTCCEEECCSSCCSC-CCHH-----HHTTCTTCCEEECC
T ss_pred cc--CHhHccCcccccEeeCCCCcCCc-CCHH-----HcccCcccCEEecc
Confidence 86 57889999999999999999997 4433 36789999988863
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=200.69 Aligned_cols=203 Identities=19% Similarity=0.227 Sum_probs=175.0
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccC-CcCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSN-NFIVH 419 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~-N~Lt~ 419 (645)
....+....+..+..+.+|+.|+|++|.+..+..- ....++|+.|+|++|.|+.++ .|..+++|+.|+|++ |.+..
T Consensus 96 s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 96 SRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp CSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 34456666778899999999999999999876542 223389999999999999988 589999999999998 56777
Q ss_pred CCCCCCC--CCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc--ccccCCC
Q 006427 420 IPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI--EGLHRLL 494 (645)
Q Consensus 420 ip~~~~~--~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~ 494 (645)
++...|. ++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|.|+.+ ..|..++
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred eCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 8776664 89999999999999999999999999999999999977 45599999999999999999987 4688999
Q ss_pred CCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcC
Q 006427 495 KLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSL 548 (645)
Q Consensus 495 ~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~ 548 (645)
+|+.|+|++|+|+.+ .+..+..+++|+.|+|++|++.|.+....+..++...
T Consensus 256 ~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 256 SLVEINLAHNNLTLL--PHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp TCCEEECTTSCCCCC--CTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred CCCEEECCCCCCCcc--ChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 999999999999986 3467889999999999999999998877676665443
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=4.5e-20 Score=200.83 Aligned_cols=201 Identities=18% Similarity=0.213 Sum_probs=172.4
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccC-CcCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSN-NFIVH 419 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~-N~Lt~ 419 (645)
....+...++..+..+.+|+.|+|++|.+.....-. ...++|++|+|++|.|+.+| .+..+++|+.|+|++ |.+..
T Consensus 107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 344566667788999999999999999998765432 22379999999999999988 589999999999998 67777
Q ss_pred CCCCCCC--CCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc--ccccCCC
Q 006427 420 IPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI--EGLHRLL 494 (645)
Q Consensus 420 ip~~~~~--~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~ 494 (645)
++...+. ++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|.|+.+ ..|..++
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 8776654 89999999999999999999999999999999999977 44599999999999999999987 4588999
Q ss_pred CCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHh
Q 006427 495 KLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVC 546 (645)
Q Consensus 495 ~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl 546 (645)
+|+.|+|++|+|+++ .+..+..+++|+.|+|++|++.|.+....+..++-
T Consensus 267 ~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 267 SLVELNLAHNNLSSL--PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp TCCEEECCSSCCSCC--CTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred CCCEEECCCCcCCcc--ChHHhccccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 999999999999986 34667889999999999999999887766655543
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.2e-20 Score=192.89 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=113.8
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006427 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
..++.+|+.|+|+++.+..+..+.. .++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....++|+.|+|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~-l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HHHcCCcCEEEeeCCCccCchhhhc-cCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 3455666666666666655443222 256666666666666665566666666666666666665432333566666666
Q ss_pred CCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHh
Q 006427 436 RNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515 (645)
Q Consensus 436 ~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~ 515 (645)
+|.|+.++.+..+++|++|+|++|.++.++. +..+++|++|+|++|.|++++.+..+++|+.|+|++|.|+++. .
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~- 190 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---P- 190 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---G-
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh---h-
Confidence 6666666656666666666666666665543 5566666666666666666644666666666666666666532 2
Q ss_pred hhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 516 VANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 516 l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
+..+++|+.|+|++|.+.+..+ +..+++|+.|+.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~l 224 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTL 224 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEE
T ss_pred hcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEEc
Confidence 5566666666666666665221 345666665554
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=3.4e-20 Score=197.25 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=142.3
Q ss_pred CCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCCC--CCCCCCCCEEEccCCcCCCCCCCC
Q 006427 348 TGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIPT--ISHFSSLRSVNLSNNFIVHIPTGS 424 (645)
Q Consensus 348 l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IPs--L~~L~~L~~LdLs~N~Lt~ip~~~ 424 (645)
+...++..+..+.+|+.|+|++|.+.....-. .-.++|++|+|++|.|+.+|. +..+++|+.|+|++|.|+.+++..
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 160 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence 33444445666666666666666665543221 122566666666666666662 466666666666666666665544
Q ss_pred CC--CCCCEEecCCCCCCCCcCCCCCC-------------------CCcEEEccCCccccccCcCcCCCCCcEEEccCCC
Q 006427 425 MP--KGLHTLNLSRNKINTIEGLREMT-------------------RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 425 ~~--~sL~~LdLs~N~Ls~lp~L~~L~-------------------sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~ 483 (645)
+. ++|++|+|++|.++.++ +..++ .|+.|++++|.++.+|.. .+++|+.|+|++|.
T Consensus 161 ~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN 237 (390)
T ss_dssp TSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCC
Confidence 43 56666666666665542 22222 233344444444433322 23567888888888
Q ss_pred CCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChh
Q 006427 484 ISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQ 563 (645)
Q Consensus 484 Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n 563 (645)
+++++.+..+++|+.|+|++|.|+++ .|..+..+++|+.|+|++|.+++ +|.. ...+++|+.|+. ..|
T Consensus 238 l~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~------~~~l~~L~~L~L---~~n 305 (390)
T 3o6n_A 238 LTDTAWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQRLERLYISNNRLVA-LNLY------GQPIPTLKVLDL---SHN 305 (390)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCEE--ESGGGTTCSSCCEEECCSSCCCE-EECS------SSCCTTCCEEEC---CSS
T ss_pred CcccHHHcCCCCccEEECCCCcCCCc--ChhHccccccCCEEECCCCcCcc-cCcc------cCCCCCCCEEEC---CCC
Confidence 88777788888899999999988876 56778888899999999998876 4443 456788888876 444
Q ss_pred hhhhhhhHHHHHHHhcCCCCccccccccccCCccC
Q 006427 564 RARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGS 598 (645)
Q Consensus 564 ~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~ 598 (645)
.+.+ ++..+... ..++.+.+++|.+.+.
T Consensus 306 ~l~~-~~~~~~~l------~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 306 HLLH-VERNQPQF------DRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCCC-CGGGHHHH------TTCSEEECCSSCCCCC
T ss_pred ccee-cCcccccc------CcCCEEECCCCcccee
Confidence 4443 33334332 4566777887777643
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=6.4e-22 Score=205.94 Aligned_cols=224 Identities=18% Similarity=0.224 Sum_probs=187.4
Q ss_pred cCCCEEecCCccccc---cchhhccCCCccEEEecC-CCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCE
Q 006427 360 TRRSEINLSEEILHA---NSVIRSLNSSSAVAHIAG-IGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHT 431 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~---~~~l~~L~~~L~~L~Ls~-N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~ 431 (645)
.+++.|+|++|.+.+ .+....-.++|++|+|++ |.+. .+| .+..+++|++|+|++|.|++..+..+. ++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 367899999999885 222222338999999995 8887 577 699999999999999999955554443 89999
Q ss_pred EecCCCCCCC-Cc-CCCCCCCCcEEEccCCccc-cccCcCcCCC-CCcEEEccCCCCCCc--ccccCCCCCCEEECcCCC
Q 006427 432 LNLSRNKINT-IE-GLREMTRLRVLDLSYNRIF-RIGHGLSNCT-LIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 432 LdLs~N~Ls~-lp-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~-sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~ 505 (645)
|+|++|.|++ ++ .+..+++|++|+|++|.|+ .+|..+..++ +|++|+|++|.+++. ..+..+. |+.|+|++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999995 44 4899999999999999999 8888899998 999999999999864 5577776 9999999999
Q ss_pred CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcc
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSS 585 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl 585 (645)
|++. +|..+..+++|+.|+|++|.+.+.+|. +..+++|++|+. ..|.+.+.+|..+.. ...+
T Consensus 209 l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~l~~L~~L~L---s~N~l~~~~p~~l~~------l~~L 270 (313)
T 1ogq_A 209 LEGD--ASVLFGSDKNTQKIHLAKNSLAFDLGK-------VGLSKNLNGLDL---RNNRIYGTLPQGLTQ------LKFL 270 (313)
T ss_dssp EEEC--CGGGCCTTSCCSEEECCSSEECCBGGG-------CCCCTTCCEEEC---CSSCCEECCCGGGGG------CTTC
T ss_pred ccCc--CCHHHhcCCCCCEEECCCCceeeecCc-------ccccCCCCEEEC---cCCcccCcCChHHhc------CcCC
Confidence 9976 778899999999999999999986553 466889999986 677788788876653 3678
Q ss_pred ccccccccCCccCccCC
Q 006427 586 QRKAVKRTGRSGSLPSS 602 (645)
Q Consensus 586 ~~~~l~~n~lSG~iPss 602 (645)
+.+.++.|.++|.+|..
T Consensus 271 ~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CEEECCSSEEEEECCCS
T ss_pred CEEECcCCcccccCCCC
Confidence 88999999999999975
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.2e-20 Score=192.04 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=171.3
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccc---hhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANS---VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~---~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip 421 (645)
..+...++..+.++++|+.|+|++|.+.... ......++|++|+|++|.|+.+| .+..+++|+.|+|++|.++.++
T Consensus 38 n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~ 117 (306)
T 2z66_A 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117 (306)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESST
T ss_pred CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccc
Confidence 3444555556788999999999999987542 22223489999999999999888 5889999999999999999887
Q ss_pred C-CCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCcccc--ccCcCcCCCCCcEEEccCCCCCCc--ccccC
Q 006427 422 T-GSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFR--IGHGLSNCTLIKELYLAGNKISDI--EGLHR 492 (645)
Q Consensus 422 ~-~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~--LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~ 492 (645)
. ..+. ++|++|+|++|.+..+. .+..+++|++|+|++|.++. +|..+..+++|++|+|++|.|+++ ..+..
T Consensus 118 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 6 3333 89999999999998653 38889999999999999985 787899999999999999999987 46889
Q ss_pred CCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC-CCceecc
Q 006427 493 LLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP-KLVYLNK 557 (645)
Q Consensus 493 L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~-~L~~Ld~ 557 (645)
+++|+.|+|++|.|+++. +..+..+++|+.|+|++|.+.+..|.. +..++ +|++|+.
T Consensus 198 l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~~L~~L~L 255 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQE------LQHFPSSLAFLNL 255 (306)
T ss_dssp CTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSS------CCCCCTTCCEEEC
T ss_pred CCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHH------HHhhhccCCEEEc
Confidence 999999999999999863 356789999999999999999977765 66664 8998876
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.1e-19 Score=182.71 Aligned_cols=182 Identities=21% Similarity=0.321 Sum_probs=154.3
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR 436 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~ 436 (645)
..+.++++++.+..++ ..+.+.++.|+|++|+|+.++ .+..+++|++|+|++|.|+.+++..+. ++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p--~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP--SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCC--SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccC--CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4567899988887654 345578999999999999876 589999999999999999998887665 8999999999
Q ss_pred CCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccc
Q 006427 437 NKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKA 511 (645)
Q Consensus 437 N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~ 511 (645)
|.|+.++ .|..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|++++ .+..+++|++|+|++|+|+++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 170 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-- 170 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc--
Confidence 9999885 378999999999999999988876 688999999999999999983 488999999999999999986
Q ss_pred hhHhhhcCCCCcEEEccCCCCCcC-CChhHHHHHHh
Q 006427 512 LGQLVANYQSLLALNLLGNPIQSN-ISDDQLRKAVC 546 (645)
Q Consensus 512 LP~~l~~L~sL~~LdLs~N~L~g~-iP~~~l~~~vl 546 (645)
.+..+..+++|+.|+|++|++.+. +....+..++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 446788999999999999999986 33333444443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.4e-20 Score=201.32 Aligned_cols=239 Identities=20% Similarity=0.208 Sum_probs=166.6
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchh---hccCCCccEEEecCCCCCcC-CC--CCCCCCCCEEEccCCcCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVI---RSLNSSSAVAHIAGIGLKAI-PT--ISHFSSLRSVNLSNNFIVH 419 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l---~~L~~~L~~L~Ls~N~Lt~I-Ps--L~~L~~L~~LdLs~N~Lt~ 419 (645)
..+....+..+.++.+|+.|+|++|.+.+.... ..-.++|++|+|++|.|+.+ |. +..+++|++|+|++|.++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 344445566677777777777777777642211 11126777777777777765 32 6677778888887777776
Q ss_pred CCCCCCC------------------------------------CCCCEEecCCCCCCCC-c-C-----------------
Q 006427 420 IPTGSMP------------------------------------KGLHTLNLSRNKINTI-E-G----------------- 444 (645)
Q Consensus 420 ip~~~~~------------------------------------~sL~~LdLs~N~Ls~l-p-~----------------- 444 (645)
+.+..+. ++|++|+|++|.+++. + .
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 6544321 3456666666655421 0 0
Q ss_pred --------------------CC--CCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEE
Q 006427 445 --------------------LR--EMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVL 499 (645)
Q Consensus 445 --------------------L~--~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~L 499 (645)
+. ..++|+.|+|++|.++.+ |..+..+++|++|+|++|.|+++ ..+..+++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 00 124677777777777754 45588899999999999999886 368889999999
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhc
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLG 579 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~ 579 (645)
+|++|.|+++ .+..+..+++|+.|+|++|.+.+..|.. +..+++|++|+. ..|.+.+..+..+.
T Consensus 329 ~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L---~~N~l~~~~~~~~~----- 392 (455)
T 3v47_A 329 NLSQNFLGSI--DSRMFENLDKLEVLDLSYNHIRALGDQS------FLGLPNLKELAL---DTNQLKSVPDGIFD----- 392 (455)
T ss_dssp ECCSSCCCEE--CGGGGTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEEC---CSSCCSCCCTTTTT-----
T ss_pred ECCCCccCCc--ChhHhcCcccCCEEECCCCcccccChhh------ccccccccEEEC---CCCccccCCHhHhc-----
Confidence 9999999876 5678889999999999999998866765 677889998887 45666654433222
Q ss_pred CCCCccccccccccCCccCccC
Q 006427 580 NSSQSSQRKAVKRTGRSGSLPS 601 (645)
Q Consensus 580 ~~~~sl~~~~l~~n~lSG~iPs 601 (645)
. -..++.+.++.|.+++.+|.
T Consensus 393 ~-l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 393 R-LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp T-CTTCCEEECCSSCBCCCTTT
T ss_pred c-CCcccEEEccCCCcccCCCc
Confidence 1 25678889999999998884
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=4.5e-20 Score=190.60 Aligned_cols=190 Identities=24% Similarity=0.312 Sum_probs=103.0
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEe
Q 006427 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN 433 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~Ld 433 (645)
+.++.+++.++++++.+..++ ..+.+.++.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.....++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip--~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC--SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCC--CCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 344555566666655555432 223345556666666665543 3555566666666666665555443345566666
Q ss_pred cCCCCCCCCcC-CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 434 LSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 434 Ls~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|++|.|+.++. +..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+|+.++ .|..+++|+.|+|++|+|+.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 66666655543 45555666666666666655433 555566666666666665552 245555666666666666553
Q ss_pred cchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceec
Q 006427 510 KALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLN 556 (645)
Q Consensus 510 ~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld 556 (645)
+ +..+..+++|+.|+|++|.|+. +|.. +..+++|+.|+
T Consensus 164 ~--~~~~~~l~~L~~L~L~~N~l~~-ip~~------~~~~~~L~~l~ 201 (290)
T 1p9a_G 164 P--AGLLNGLENLDTLLLQENSLYT-IPKG------FFGSHLLPFAF 201 (290)
T ss_dssp C--TTTTTTCTTCCEEECCSSCCCC-CCTT------TTTTCCCSEEE
T ss_pred C--HHHhcCcCCCCEEECCCCcCCc-cChh------hcccccCCeEE
Confidence 1 2334555666666666666553 4444 33344555444
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-19 Score=183.80 Aligned_cols=175 Identities=20% Similarity=0.351 Sum_probs=98.8
Q ss_pred CCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCCC--CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecC
Q 006427 361 RRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIPT--ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IPs--L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs 435 (645)
+++.|+|++|.+.....-. .-.++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+++..+. ++|++|+|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4566666666555443211 112556666666666665552 45566666666666666665554433 556666666
Q ss_pred CCCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCcc
Q 006427 436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTK 510 (645)
Q Consensus 436 ~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~ 510 (645)
+|.|+.++. |..+++|++|+|++|.|+.+|.. +..+++|++|+|++|.|+.++ .|..+++|++|+|++|.|+++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~- 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV- 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-
Confidence 666665532 55566666666666666655544 555666666666666666552 255556666666666666554
Q ss_pred chhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 511 ALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 511 ~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
.+..+..+++|+.|+|++|++.+.++
T Consensus 197 -~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 -PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp -CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred -CHHHhccccCCCEEEecCCCeeCCCc
Confidence 22345556666666666666655443
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.3e-19 Score=182.19 Aligned_cols=188 Identities=20% Similarity=0.306 Sum_probs=162.9
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR 436 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~ 436 (645)
.++.++++++.+..++ ..+.++++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++...|. ++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP--SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCC--SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccC--CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4678899999888654 345578999999999999988 589999999999999999999987764 8999999999
Q ss_pred CCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccc
Q 006427 437 NKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKA 511 (645)
Q Consensus 437 N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~ 511 (645)
|.|+.++ .+..+++|++|+|++|.|+.++.. |..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-- 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe--
Confidence 9999885 378999999999999999988765 789999999999999999983 388999999999999999986
Q ss_pred hhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 512 LGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 512 LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
.+..+..+++|+.|+|++|.|++ +|.. .+..+++|+.|+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~-~~~~-----~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKR-VPEG-----AFDSLEKLKMLQLQ 213 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC-CCTT-----TTTTCTTCCEEECC
T ss_pred ChhHhccCCCcCEEECCCCcCCc-CCHH-----HhccccCCCEEEec
Confidence 34568899999999999999987 4443 25678899988764
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=6.7e-20 Score=191.10 Aligned_cols=223 Identities=22% Similarity=0.237 Sum_probs=165.7
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCC-CCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEe
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIG-LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN 433 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~-Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~Ld 433 (645)
.+..+++|+.|+|++|.+.....+. ..++|+.|++++|. +..++.+..+++|+.|++++|.+..++.....++|+.|+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISPLA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGGGT-TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred HHcCCCcCCEEECcCCcccCchhhc-cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 5778888888888888887766533 23678888888884 445667788888888888888887766533347888888
Q ss_pred cCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchh
Q 006427 434 LSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 434 Ls~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
|++|.+..++.+..+++|+.|++++|.++.++. +..+++|++|+|++|.++.++.+..+++|++|+|++|.++++
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---- 258 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---- 258 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC----
Confidence 888888887777788888888888888887654 777788888888888888876678888888888888888774
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcccccccccc
Q 006427 514 QLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRT 593 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n 593 (645)
..+..+++|+.|+|++|.+.+ ++ . +..+++|+.|+. ..+.+.+..+..+.. -..++.+.+++|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~~-~------~~~l~~L~~L~L---~~n~l~~~~~~~l~~------l~~L~~L~L~~n 321 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-IS-V------LNNLSQLNSLFL---NNNQLGNEDMEVIGG------LTNLTTLFLSQN 321 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-CG-G------GGGCTTCSEEEC---CSSCCCGGGHHHHHT------CTTCSEEECCSS
T ss_pred hhHhcCCCcCEEEccCCccCC-Ch-h------hcCCCCCCEEEC---cCCcCCCcChhHhhc------cccCCEEEccCC
Confidence 236778888888888888876 32 1 566777887775 455666666655553 256677788888
Q ss_pred CCccCcc
Q 006427 594 GRSGSLP 600 (645)
Q Consensus 594 ~lSG~iP 600 (645)
.+.+..|
T Consensus 322 ~l~~~~~ 328 (347)
T 4fmz_A 322 HITDIRP 328 (347)
T ss_dssp SCCCCGG
T ss_pred ccccccC
Confidence 8777655
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=3.1e-21 Score=219.87 Aligned_cols=233 Identities=13% Similarity=0.170 Sum_probs=140.9
Q ss_pred ChhhhhcccCCCEEecCCccccc------------------cchhhc--cCCCccEEEecCCCCC-cCC-CCCCCCCCCE
Q 006427 352 PARSTAHLTRRSEINLSEEILHA------------------NSVIRS--LNSSSAVAHIAGIGLK-AIP-TISHFSSLRS 409 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~------------------~~~l~~--L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~ 409 (645)
+|..+.++++|+.|+|++|.+.+ ++.... -.++|++|+|++|.+. .+| .++.+++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45556666666666666666655 222222 2356666666666654 345 4666666666
Q ss_pred EEccCCc-CCC--CCCCCC-------CCCCCEEecCCCCCCCCcC---CCCCCCCcEEEccCCccc-cccCcCcCCCCCc
Q 006427 410 VNLSNNF-IVH--IPTGSM-------PKGLHTLNLSRNKINTIEG---LREMTRLRVLDLSYNRIF-RIGHGLSNCTLIK 475 (645)
Q Consensus 410 LdLs~N~-Lt~--ip~~~~-------~~sL~~LdLs~N~Ls~lp~---L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~ 475 (645)
|+|++|. +++ +|.... .++|++|+|++|.|+.+|. ++.+++|++|+|++|.++ .+| .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 6666665 553 332211 1566666666666666554 666666777777777666 666 666666677
Q ss_pred EEEccCCCCCCc-ccccCCCC-CCEEECcCCCCCCccchhHhhhcCC--CCcEEEccCCCCCcCCChhHHHHHHhc----
Q 006427 476 ELYLAGNKISDI-EGLHRLLK-LTVLDMSFNKITTTKALGQLVANYQ--SLLALNLLGNPIQSNISDDQLRKAVCS---- 547 (645)
Q Consensus 476 ~L~Ls~N~Ls~l-~~l~~L~~-L~~LdLS~N~Ls~~~~LP~~l~~L~--sL~~LdLs~N~L~g~iP~~~l~~~vl~---- 547 (645)
+|+|++|.|+.+ ..+..+++ |++|+|++|.|+. +|..+..+. +|+.|+|++|.+.+.+|.. +.
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~~~~ 427 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------FDPLDP 427 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---CCSCCCTTCSSCEEEEECCSSCTTTTTTCS------SCTTCS
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcc---cchhhhhcccCccCEEECcCCcCCCcchhh------hccccc
Confidence 777777766655 34666666 7777777777764 455555443 6777777777777766654 33
Q ss_pred ---CCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCccCCCC
Q 006427 548 ---LLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 548 ---~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
.+++|++|+. ..|.+. .+|..+... ...++.+.+++|.+. .+|....
T Consensus 428 ~~~~~~~L~~L~L---s~N~l~-~lp~~~~~~-----l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 428 TPFKGINVSSINL---SNNQIS-KFPKELFST-----GSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp SCCCCCCEEEEEC---CSSCCC-SCCTHHHHT-----TCCCSEEECCSSCCS-BCCSSSS
T ss_pred ccccCCCCCEEEC---cCCccC-cCCHHHHcc-----CCCCCEEECCCCCCC-CcCHHHh
Confidence 4556666665 445555 334333221 256777888888888 7776553
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=3.9e-20 Score=192.81 Aligned_cols=196 Identities=21% Similarity=0.239 Sum_probs=121.8
Q ss_pred CCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCC
Q 006427 348 TGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 348 l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
+...++..+.++++|+.|+|++|.+....... .-.++|++|+|++|.|+.+|. +. ++|+.|+|++|.|+.+++..+
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGG
T ss_pred CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHh
Confidence 33444455666667777777776666542211 112566777777777766662 22 567777777777766665433
Q ss_pred C--CCCCEEecCCCCCCC--C--cCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCC
Q 006427 426 P--KGLHTLNLSRNKINT--I--EGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLT 497 (645)
Q Consensus 426 ~--~sL~~LdLs~N~Ls~--l--p~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~ 497 (645)
. ++|+.|+|++|.++. + ..+..+ +|++|++++|.++.+|..+. ++|++|+|++|.|+++ ..+..+++|+
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 3 667777777776653 1 224445 66667777776666665543 5677777777777665 3466677777
Q ss_pred EEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 498 VLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 498 ~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
.|+|++|.|+++ .+..+..+++|+.|+|++|.+. .+|.. +..+++|++|+.
T Consensus 221 ~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~-~lp~~------l~~l~~L~~L~l 271 (332)
T 2ft3_A 221 RLGLGHNQIRMI--ENGSLSFLPTLRELHLDNNKLS-RVPAG------LPDLKLLQVVYL 271 (332)
T ss_dssp CCBCCSSCCCCC--CTTGGGGCTTCCEEECCSSCCC-BCCTT------GGGCTTCCEEEC
T ss_pred EEECCCCcCCcC--ChhHhhCCCCCCEEECCCCcCe-ecChh------hhcCccCCEEEC
Confidence 777777777765 3345667777777777777776 36654 556667776665
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.4e-19 Score=186.90 Aligned_cols=217 Identities=24% Similarity=0.258 Sum_probs=148.2
Q ss_pred hhcccCCCEEecCCcc-ccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 356 TAHLTRRSEINLSEEI-LHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~-l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
+..+++|+.|+|++|. +..... ....++|+.|++++|.+..++.+..+++|+.|++++|.++.++.....++|+.|++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeec
Confidence 6677778888887773 333322 22236777888888877777767777788888888887777665333477788888
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
++|.++.++.+..+++|+.|+|++|.++.++. +..+++|++|+|++|.++.++.+..+++|+.|+|++|.|+++ .
T Consensus 207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~----~ 281 (347)
T 4fmz_A 207 YVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI----S 281 (347)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----G
T ss_pred ccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC----h
Confidence 88877777667777788888888887777665 777778888888888777777777777888888888877774 2
Q ss_pred hhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccC
Q 006427 515 LVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTG 594 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~ 594 (645)
.+..+++|+.|+|++|.+.+..+.. +..+++|++|+. ..|.+.+..+ +.. -..++.+.+++|.
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~L---~~n~l~~~~~--~~~------l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEV------IGGLTNLTTLFL---SQNHITDIRP--LAS------LSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHH------HHTCTTCSEEEC---CSSSCCCCGG--GGG------CTTCSEESSSCC-
T ss_pred hhcCCCCCCEEECcCCcCCCcChhH------hhccccCCEEEc---cCCccccccC--hhh------hhccceeehhhhc
Confidence 3667778888888888777644433 566777777775 4455555544 211 2445555666655
Q ss_pred C
Q 006427 595 R 595 (645)
Q Consensus 595 l 595 (645)
+
T Consensus 345 i 345 (347)
T 4fmz_A 345 I 345 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=201.71 Aligned_cols=233 Identities=20% Similarity=0.119 Sum_probs=130.2
Q ss_pred CChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC-
Q 006427 351 SPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP- 426 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~- 426 (645)
..+..+.++++|+.|+|++|.+.....-. .-.++|++|+|++|.|+.+| .|..+++|+.|+|++|.|+.+++..+.
T Consensus 47 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 47 LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence 33444555555555555555555432211 11145555555555555555 245555555555555555555444333
Q ss_pred -CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc---------------
Q 006427 427 -KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--------------- 487 (645)
Q Consensus 427 -~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--------------- 487 (645)
++|+.|+|++|.|+.+. .|..+++|+.|+|++|.++.++.. +..+++|+.|+|++|.+..+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 45555555555555442 355555555555555555544432 44445555555555544433
Q ss_pred -----------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceec
Q 006427 488 -----------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLN 556 (645)
Q Consensus 488 -----------~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld 556 (645)
..+....+|+.|+|++|.|+.++ +..+..+++|+.|+|++|.+.+..+.. +..+++|+.|+
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~ 278 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPISTIEGSM------LHELLRLQEIQ 278 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC--HHHHTTCTTCCEEECCSSCCCEECTTS------CTTCTTCCEEE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccC--HHHhcCccccCeeECCCCcCCccChhh------ccccccCCEEE
Confidence 22223336667777777777642 256778888888888888887644433 56677777777
Q ss_pred ccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCcc
Q 006427 557 KQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLP 600 (645)
Q Consensus 557 ~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iP 600 (645)
. ..|.+.+..+..+.. -..++.+.++.|.+++..+
T Consensus 279 L---~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 279 L---VGGQLAVVEPYAFRG------LNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp C---CSSCCSEECTTTBTT------CTTCCEEECCSSCCSCCCG
T ss_pred C---CCCccceECHHHhcC------cccCCEEECCCCcCceeCH
Confidence 5 455555555543332 2567778888888876444
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=5.1e-20 Score=191.54 Aligned_cols=170 Identities=18% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCEEecCCccccccchh-hccCCCccEEEecCCCCCcC-C-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCC
Q 006427 361 RRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~I-P-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N 437 (645)
.|+.|+|++|.+.....- ..-.++|++|+|++|.|+.+ | .+..+++|++|+|++|.|+.++...+ ++|++|+|++|
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n 131 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHEN 131 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCC
Confidence 344444444444433221 11114444444444444443 2 34444444444444444444433322 34444444444
Q ss_pred CCCCCcC--CCCCCCCcEEEccCCcccc---ccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccch
Q 006427 438 KINTIEG--LREMTRLRVLDLSYNRIFR---IGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKAL 512 (645)
Q Consensus 438 ~Ls~lp~--L~~L~sL~~LdLS~N~Ls~---LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~L 512 (645)
.|+.++. +..+++|++|+|++|.++. .+..+..+++|++|++++|.++.++... .++|+.|+|++|.|+++ .
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~--~ 208 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKV--D 208 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEE--C
T ss_pred cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCcc--C
Confidence 4444321 4444444444444444431 1222444444444444444444432110 13444444444444443 2
Q ss_pred hHhhhcCCCCcEEEccCCCCCc
Q 006427 513 GQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 513 P~~l~~L~sL~~LdLs~N~L~g 534 (645)
+..+..+++|+.|+|++|.+.+
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCE
T ss_pred HHHhcCCCCCCEEECCCCcCce
Confidence 3334444444444444444444
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=3e-19 Score=184.39 Aligned_cols=185 Identities=22% Similarity=0.240 Sum_probs=159.0
Q ss_pred cCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCC-CCCCCEEecCCC
Q 006427 360 TRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM-PKGLHTLNLSRN 437 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~-~~sL~~LdLs~N 437 (645)
..++.|+|++|.+.....-. .-.++|+.|+|++|.|+.++....+++|+.|+|++|.|+.++.... .++|++|+|++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 57899999999998764322 2238999999999999999877899999999999999998886433 389999999999
Q ss_pred CCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccch
Q 006427 438 KINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKAL 512 (645)
Q Consensus 438 ~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~L 512 (645)
+|+.++ .|..+++|++|+|++|+|+.+|.. |..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+. +
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---i 187 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT---I 187 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC---C
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc---c
Confidence 999985 389999999999999999988876 788999999999999999983 37889999999999999997 6
Q ss_pred hHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006427 513 GQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 513 P~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
|..+..+.+|+.|+|.+|++.|.+....+..++..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred ChhhcccccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 77788889999999999999987755555555443
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.3e-19 Score=188.40 Aligned_cols=237 Identities=17% Similarity=0.197 Sum_probs=184.1
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip 421 (645)
....+...++..+.++++|+.|+|++|.+.....- ..-.++|++|+|++|.|+.+|. +. ++|+.|++++|.++.++
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR 137 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBC
T ss_pred CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccC
Confidence 34556666677889999999999999999876332 2223799999999999999983 43 79999999999999887
Q ss_pred CCCCC--CCCCEEecCCCCCCC--C--cCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--ccccCC
Q 006427 422 TGSMP--KGLHTLNLSRNKINT--I--EGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EGLHRL 493 (645)
Q Consensus 422 ~~~~~--~sL~~LdLs~N~Ls~--l--p~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L 493 (645)
+..+. ++|+.|+|++|.+.. + ..+..+++|++|+|++|.++.+|..+. ++|++|+|++|.|+++ ..+..+
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence 75443 899999999999974 2 348889999999999999999987664 7999999999999987 568999
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i 573 (645)
++|+.|+|++|.|+++ .+..+..+++|+.|+|++|.+. .+|.. +..+++|++|+. ..|.+++.-+..+
T Consensus 216 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~-~lp~~------l~~l~~L~~L~l---~~N~i~~~~~~~f 283 (330)
T 1xku_A 216 NNLAKLGLSFNSISAV--DNGSLANTPHLRELHLNNNKLV-KVPGG------LADHKYIQVVYL---HNNNISAIGSNDF 283 (330)
T ss_dssp TTCCEEECCSSCCCEE--CTTTGGGSTTCCEEECCSSCCS-SCCTT------TTTCSSCCEEEC---CSSCCCCCCTTSS
T ss_pred CCCCEEECCCCcCcee--ChhhccCCCCCCEEECCCCcCc-cCChh------hccCCCcCEEEC---CCCcCCccChhhc
Confidence 9999999999999986 4467899999999999999998 47776 677899998886 4555554433333
Q ss_pred HHHHhcCCCCccccccccccCCc
Q 006427 574 AKAVLGNSSQSSQRKAVKRTGRS 596 (645)
Q Consensus 574 ~~~~l~~~~~sl~~~~l~~n~lS 596 (645)
+..........+..+.+..|.+.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcccccccccccceEeecCccc
Confidence 21111111233445556665543
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=6.7e-20 Score=197.81 Aligned_cols=231 Identities=21% Similarity=0.156 Sum_probs=146.4
Q ss_pred hhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCc-CC-C--CCCCCCCCEEEccCCcCCCCCCCC-C-
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKA-IP-T--ISHFSSLRSVNLSNNFIVHIPTGS-M- 425 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~-IP-s--L~~L~~L~~LdLs~N~Lt~ip~~~-~- 425 (645)
+..+..+.+|+.|+|++|.+.....- ..-.++|++|+|++|.|+. ++ . +..+++|++|+|++|.|+.+.+.. +
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 45566677777777777766554221 1122667777777777764 22 2 667777777777777777665443 2
Q ss_pred -CCCCCEEecCCCCCCCCc--CCC----------------------------------CCCCCcEEEccCCcccc-ccCc
Q 006427 426 -PKGLHTLNLSRNKINTIE--GLR----------------------------------EMTRLRVLDLSYNRIFR-IGHG 467 (645)
Q Consensus 426 -~~sL~~LdLs~N~Ls~lp--~L~----------------------------------~L~sL~~LdLS~N~Ls~-LP~~ 467 (645)
.++|++|+|++|.++++. .+. .+++|++|+|++|.++. +|..
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 267777777777766542 122 22456666666665541 1111
Q ss_pred Cc---------------------------------------CCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCC
Q 006427 468 LS---------------------------------------NCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 468 l~---------------------------------------~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~L 506 (645)
+. .+++|+.|+|++|.++++ ..+..+++|++|+|++|.|
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 10 114566677777766664 3477788888888888888
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccc
Q 006427 507 TTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQ 586 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~ 586 (645)
+++ .|..+..+++|+.|+|++|.+.+..|.. +..+++|+.|+. ..|.+.+..+..+.. -..++
T Consensus 312 ~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L---s~N~l~~~~~~~~~~------l~~L~ 374 (455)
T 3v47_A 312 NKI--DDNAFWGLTHLLKLNLSQNFLGSIDSRM------FENLDKLEVLDL---SYNHIRALGDQSFLG------LPNLK 374 (455)
T ss_dssp CEE--CTTTTTTCTTCCEEECCSSCCCEECGGG------GTTCTTCCEEEC---CSSCCCEECTTTTTT------CTTCC
T ss_pred ccc--ChhHhcCcccCCEEECCCCccCCcChhH------hcCcccCCEEEC---CCCcccccChhhccc------ccccc
Confidence 875 4567788888888888888887755544 677888888876 556666665544432 25677
Q ss_pred cccccccCCccCcc
Q 006427 587 RKAVKRTGRSGSLP 600 (645)
Q Consensus 587 ~~~l~~n~lSG~iP 600 (645)
.+.++.|.+.+..+
T Consensus 375 ~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 375 ELALDTNQLKSVPD 388 (455)
T ss_dssp EEECCSSCCSCCCT
T ss_pred EEECCCCccccCCH
Confidence 88888888886433
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=4.6e-20 Score=191.80 Aligned_cols=235 Identities=21% Similarity=0.226 Sum_probs=187.4
Q ss_pred CCCCCCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC
Q 006427 345 SPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS 424 (645)
Q Consensus 345 ~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~ 424 (645)
...+...++..+..+++|+.|+|++|.+.+...+.. .++|++|+|++|.|+.++. +++|+.|++++|.|+.++...
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~~~ 118 (317)
T 3o53_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLDLES-LSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCSR 118 (317)
T ss_dssp TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETT-CTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEECC
T ss_pred CCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhh-cCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCccc
Confidence 455666778889999999999999999987655332 3789999999999998773 389999999999999887665
Q ss_pred CCCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccC-cC-cCCCCCcEEEccCCCCCCcccccCCCCCCEEE
Q 006427 425 MPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGH-GL-SNCTLIKELYLAGNKISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 425 ~~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~-~l-~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~Ld 500 (645)
+ ++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++. .+ ..+++|++|+|++|.|+.++....+++|++|+
T Consensus 119 ~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 119 G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence 4 68999999999999884 47889999999999999997643 34 47899999999999999987777799999999
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhh-hhhhHHHHHHHhc
Q 006427 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAR-ELLTDSIAKAVLG 579 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~-g~i~~~i~~~~l~ 579 (645)
|++|.|++ +|..+..+++|+.|+|++|.|+. +|.. +..+++|+.|+. ..|.+. +.++..+..
T Consensus 198 Ls~N~l~~---l~~~~~~l~~L~~L~L~~N~l~~-l~~~------~~~l~~L~~L~l---~~N~~~~~~~~~~~~~---- 260 (317)
T 3o53_A 198 LSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL-IEKA------LRFSQNLEHFDL---RGNGFHCGTLRDFFSK---- 260 (317)
T ss_dssp CCSSCCCE---ECGGGGGGTTCSEEECTTSCCCE-ECTT------CCCCTTCCEEEC---TTCCCBHHHHHHHHHT----
T ss_pred CCCCcCCc---chhhhcccCcccEEECcCCcccc-hhhH------hhcCCCCCEEEc---cCCCccCcCHHHHHhc----
Confidence 99999997 45568899999999999999986 7765 677889998886 555555 555555543
Q ss_pred CCCCcccccccc-ccCCccCccCCC
Q 006427 580 NSSQSSQRKAVK-RTGRSGSLPSSN 603 (645)
Q Consensus 580 ~~~~sl~~~~l~-~n~lSG~iPss~ 603 (645)
...+..+.+. .+.+.|..|..-
T Consensus 261 --~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 261 --NQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp --CHHHHHHHHHHHHHHHSSSSCCC
T ss_pred --cccceEEECCCchhccCCchhcc
Confidence 1334445555 355666555433
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=4.6e-20 Score=204.07 Aligned_cols=212 Identities=21% Similarity=0.214 Sum_probs=176.7
Q ss_pred CCCCCCCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCC
Q 006427 344 PSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG 423 (645)
Q Consensus 344 ~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~ 423 (645)
....+...++..+..+++|+.|+|++|.+.+...+. ..++|++|+|++|.|+.+|.. ++|+.|+|++|.|+.++..
T Consensus 42 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~-~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~~~~~~ 117 (487)
T 3oja_A 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE-SLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSCS 117 (487)
T ss_dssp CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECT-TCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCCCEEEC
T ss_pred eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccc-cCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCCCCCcc
Confidence 345666777889999999999999999998766533 337999999999999988743 8899999999999998776
Q ss_pred CCCCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCcccc-ccCcCc-CCCCCcEEEccCCCCCCcccccCCCCCCEE
Q 006427 424 SMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFR-IGHGLS-NCTLIKELYLAGNKISDIEGLHRLLKLTVL 499 (645)
Q Consensus 424 ~~~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~-LP~~l~-~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~L 499 (645)
.+ ++|+.|+|++|.|++++ .++.+++|++|+|++|.|+. +|..+. .+++|+.|+|++|.|++++.+..+++|+.|
T Consensus 118 ~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L 196 (487)
T 3oja_A 118 RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196 (487)
T ss_dssp CC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE
T ss_pred cc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEE
Confidence 54 68999999999999873 47889999999999999996 455565 789999999999999999777789999999
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhh-hhhhHHH
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAR-ELLTDSI 573 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~-g~i~~~i 573 (645)
+|++|.|++ +|..+..+++|+.|+|++|.|++ +|.. +..+++|+.|+. ..|.+. +.++..+
T Consensus 197 ~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~-lp~~------l~~l~~L~~L~l---~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 197 DLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL-IEKA------LRFSQNLEHFDL---RGNGFHCGTLRDFF 258 (487)
T ss_dssp ECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCE-ECTT------CCCCTTCCEEEC---TTCCBCHHHHHHHH
T ss_pred ECCCCCCCC---CCHhHcCCCCccEEEecCCcCcc-cchh------hccCCCCCEEEc---CCCCCcCcchHHHH
Confidence 999999998 45568899999999999999997 7766 677889998876 444444 4444433
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=9.9e-20 Score=203.85 Aligned_cols=235 Identities=19% Similarity=0.169 Sum_probs=165.5
Q ss_pred ChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCC-cCC--CCCCCCCCCEEEccCCcCCCCC--CCCC
Q 006427 352 PARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLK-AIP--TISHFSSLRSVNLSNNFIVHIP--TGSM 425 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt-~IP--sL~~L~~L~~LdLs~N~Lt~ip--~~~~ 425 (645)
+|..+..+++|+.|+|++|.+...... ..-.++|+.|+|++|.+. .+| .+..+++|+.|+|++|.++.+. +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 345567777888888888777655332 222267788888888776 555 3777888888888888887654 3333
Q ss_pred C--CCCCEEecCCCCCCCC--cCCCCCCCCcEEEccCCccccc-cCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCC
Q 006427 426 P--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRI-GHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLT 497 (645)
Q Consensus 426 ~--~sL~~LdLs~N~Ls~l--p~L~~L~sL~~LdLS~N~Ls~L-P~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~ 497 (645)
. ++|++|+|++|.+.++ ..+..+++|+.|+|++|.++.+ +.. +..+++|+.|+|++|.+++. ..+..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 2 7788888888887765 2477788888888888888743 333 77788888888888888775 4477788888
Q ss_pred EEECcCCCCCCcc-chhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHH
Q 006427 498 VLDMSFNKITTTK-ALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 498 ~LdLS~N~Ls~~~-~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~ 576 (645)
+|+|++|.+++.. ..+..+..+++|+.|+|++|.+++..|.. +..+++|+.|+. +.|++.+..+..+..
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L---s~N~l~~~~~~~l~~- 522 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA------FTSLKMMNHVDL---SHNRLTSSSIEALSH- 522 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEEC---CSSCCCGGGGGGGTT-
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh------hccccCCCEEEC---CCCccCcCChhHhCc-
Confidence 8888888887521 12245778888888888888888766655 677888888876 566777766655543
Q ss_pred HhcCCCCccccccccccCCccCccCC
Q 006427 577 VLGNSSQSSQRKAVKRTGRSGSLPSS 602 (645)
Q Consensus 577 ~l~~~~~sl~~~~l~~n~lSG~iPss 602 (645)
...+ .+.++.|.+++..|..
T Consensus 523 -----l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 523 -----LKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp -----CCSC-EEECCSSCCCCCCGGG
T ss_pred -----cccc-EEECcCCcccccCHhh
Confidence 2444 7788888888766643
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.3e-19 Score=188.42 Aligned_cols=177 Identities=21% Similarity=0.292 Sum_probs=159.8
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+..+++|+.|+|++|.+.....+. -.++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....++|+.|+|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 136 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLK-NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGT-TCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred hhhccCCCCEEEccCCcCCCChhHc-cCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEEC
Confidence 5788999999999999999877633 337999999999999999999999999999999999999876444589999999
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
++|.|++++.+..+++|++|+|++|.|+.++. +..+++|+.|+|++|.|++++.+..+++|++|+|++|.|+++ +
T Consensus 137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~---~- 211 (308)
T 1h6u_A 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV---S- 211 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC---G-
T ss_pred CCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc---c-
Confidence 99999999889999999999999999998876 889999999999999999997799999999999999999985 3
Q ss_pred hhhcCCCCcEEEccCCCCCcCCCh
Q 006427 515 LVANYQSLLALNLLGNPIQSNISD 538 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g~iP~ 538 (645)
.+..+++|+.|+|++|++++ .|.
T Consensus 212 ~l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 212 PLANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp GGTTCTTCCEEEEEEEEEEC-CCE
T ss_pred cccCCCCCCEEEccCCeeec-CCe
Confidence 27899999999999999976 443
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.1e-19 Score=215.01 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=173.4
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCC-CCEEEccCCcCCCCCCCCCC---CCC
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSS-LRSVNLSNNFIVHIPTGSMP---KGL 429 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~-L~~LdLs~N~Lt~ip~~~~~---~sL 429 (645)
.+.++++|+.|+|++|.+..++ .....++|+.|+|++|.|+.+| .+..+++ |+.|+|++|.|+.+|..... ++|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 6777777777777777776444 1122266777777777777777 5777777 77777777777766643222 347
Q ss_pred CEEecCCCCCCCC-cCCC------CCCCCcEEEccCCccccccCcC-cCCCCCcEEEccCCCCCCccc-cc--------C
Q 006427 430 HTLNLSRNKINTI-EGLR------EMTRLRVLDLSYNRIFRIGHGL-SNCTLIKELYLAGNKISDIEG-LH--------R 492 (645)
Q Consensus 430 ~~LdLs~N~Ls~l-p~L~------~L~sL~~LdLS~N~Ls~LP~~l-~~L~sL~~L~Ls~N~Ls~l~~-l~--------~ 492 (645)
+.|+|++|.|++. +.+. .+.+|+.|+|++|.|+.+|..+ ..+++|+.|+|++|.|+.++. +. +
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 7788888877653 3222 3458899999999999888764 478999999999999987732 22 2
Q ss_pred CCCCCEEECcCCCCCCccchhHhhh--cCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccC---CChhhhhh
Q 006427 493 LLKLTVLDMSFNKITTTKALGQLVA--NYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQP---IKPQRARE 567 (645)
Q Consensus 493 L~~L~~LdLS~N~Ls~~~~LP~~l~--~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~---Is~n~~~g 567 (645)
+++|+.|+|++|+|+. +|..+. .+++|+.|+|++|.|.+ +|.. +..+++|+.|+... ++.|.+.+
T Consensus 727 l~~L~~L~Ls~N~L~~---lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~------l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMDVSYNCFSS-FPTQ------PLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp GGGCCEEECCSSCCCC---CCGGGSTTTCTTCCEEECCSSCCSS-CCCG------GGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cCCccEEECCCCCCcc---chHHhhhccCCCcCEEEeCCCCCCc-cchh------hhcCCCCCEEECCCCCCcccccccc
Confidence 3389999999999996 677776 99999999999999998 8877 77899999998753 34577778
Q ss_pred hhhHHHHHHHhcCCCCccccccccccCCccCccCCCC
Q 006427 568 LLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 568 ~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
.+|..+.. ...++.+.+++|.+ +.||....
T Consensus 797 ~ip~~l~~------L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 797 QWPTGITT------CPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCCTTGGG------CSSCCEEECCSSCC-CBCCSCCC
T ss_pred cChHHHhc------CCCCCEEECCCCCC-CccCHhhc
Confidence 88876654 36788899999999 89998764
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=198.72 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=144.4
Q ss_pred CChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC-
Q 006427 351 SPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP- 426 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~- 426 (645)
..+..+.++.+|+.|+|++|.+..+..-. .-.++|+.|+|++|.|+.++ .+..+++|+.|+|++|.++.+.+..+.
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC
Confidence 33444555555555555555554433211 11245555555555555442 345555555555555555554443333
Q ss_pred -CCCCEEecCCCCCCCCc--------------------------CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEE
Q 006427 427 -KGLHTLNLSRNKINTIE--------------------------GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELY 478 (645)
Q Consensus 427 -~sL~~LdLs~N~Ls~lp--------------------------~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~ 478 (645)
++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+. .+|..+....+|+.|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 45555555555555443 2444445555555544333 4444444445777888
Q ss_pred ccCCCCCCcc--cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceec
Q 006427 479 LAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLN 556 (645)
Q Consensus 479 Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld 556 (645)
|++|.|+.++ .+..+++|+.|+|++|.|+++ .+..+..+++|+.|+|++|.+.+..|.. +..+++|+.|+
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~ 302 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EGSMLHELLRLQEIQLVGGQLAVVEPYA------FRGLNYLRVLN 302 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE--CTTSCTTCTTCCEEECCSSCCSEECTTT------BTTCTTCCEEE
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCcc--ChhhccccccCCEEECCCCccceECHHH------hcCcccCCEEE
Confidence 8888888874 588999999999999999986 4467899999999999999999876765 77889999998
Q ss_pred ccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccC
Q 006427 557 KQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGS 598 (645)
Q Consensus 557 ~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~ 598 (645)
. ..|.+.+..+..+. . ...++.+.+..|.+.+.
T Consensus 303 L---~~N~l~~~~~~~~~-----~-l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 303 V---SGNQLTTLEESVFH-----S-VGNLETLILDSNPLACD 335 (477)
T ss_dssp C---CSSCCSCCCGGGBS-----C-GGGCCEEECCSSCEECS
T ss_pred C---CCCcCceeCHhHcC-----C-CcccCEEEccCCCccCc
Confidence 7 45555554432222 1 25677888999988765
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.3e-20 Score=210.48 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=185.5
Q ss_pred CCCCCCChh--hhhcccCCCEEecCCcccc-ccchhhccCCCccEEEecCCCCCcCC-CCCCCCC-CCEEEccCCcCCCC
Q 006427 346 PETGKSPAR--STAHLTRRSEINLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSS-LRSVNLSNNFIVHI 420 (645)
Q Consensus 346 ~~l~~~~~~--sl~~L~~L~~LdLS~n~l~-~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~-L~~LdLs~N~Lt~i 420 (645)
..+. .+|. .+.++++|+.|+|++|.+. .++ .....++|+.|+|++|.|+.+| .+..+++ |+.|+|++|.|+.+
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc
Confidence 3344 4455 7778888888888888777 333 2122267888888888888887 6788888 99999999998887
Q ss_pred CCCCCC---CCCCEEecCCCCCCCC-c-CCC-------CCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc
Q 006427 421 PTGSMP---KGLHTLNLSRNKINTI-E-GLR-------EMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI 487 (645)
Q Consensus 421 p~~~~~---~sL~~LdLs~N~Ls~l-p-~L~-------~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l 487 (645)
|..... ++|++|+|++|.|++. | .+. .+.+|++|+|++|.|+.+|.. +..+++|++|+|++|.|+.+
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 764332 3789999999998874 2 355 677999999999999988876 45689999999999999876
Q ss_pred cc--cc-------CCCCCCEEECcCCCCCCccchhHhhh--cCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceec
Q 006427 488 EG--LH-------RLLKLTVLDMSFNKITTTKALGQLVA--NYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLN 556 (645)
Q Consensus 488 ~~--l~-------~L~~L~~LdLS~N~Ls~~~~LP~~l~--~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld 556 (645)
+. +. .+++|+.|+|++|+|+. +|..+. .+++|+.|+|++|.|++ +|.. +..+++|+.|+
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~------~~~l~~L~~L~ 542 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK---LSDDFRATTLPYLVGIDLSYNSFSK-FPTQ------PLNSSTLKGFG 542 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCB---CCGGGSTTTCTTCCEEECCSSCCSS-CCCG------GGGCSSCCEEE
T ss_pred CHHHhccccccccccCCccEEECcCCcCCc---cChhhhhccCCCcCEEECCCCCCCC-cChh------hhcCCCCCEEE
Confidence 32 22 23389999999999995 677776 99999999999999998 8887 77899999998
Q ss_pred ccC---CChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCccCCCC
Q 006427 557 KQP---IKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 557 ~~~---Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
... +..|.+.+.+|..+.. -..++.+.+++|.+ +.||....
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITL------CPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGG------CSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCcccccCcccccChHHHhc------CCCCCEEECCCCcC-CccCHhHh
Confidence 743 3467777788877654 36788899999999 88988754
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2.2e-19 Score=196.19 Aligned_cols=217 Identities=23% Similarity=0.308 Sum_probs=126.6
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006427 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
+.++++|+.|+|++|.+.....+..+ ++|+.|++++|.++.++.++.+++|+.|+|++|.++.++.....++|+.|+|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKL-TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hccCCCCCEEECcCCcCCCChhhccC-CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 55566666666666666555433222 56666666666666555555666666666666666655432223566666666
Q ss_pred CCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHh
Q 006427 436 RNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQL 515 (645)
Q Consensus 436 ~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~ 515 (645)
+|.+++++.+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.++++..+..+++|+.|+|++|.+++. .|
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-- 326 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SP-- 326 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC--GG--
T ss_pred CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc--hh--
Confidence 6666666556666666666666666665554 556666666666666666665566666666666666666664 22
Q ss_pred hhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCC
Q 006427 516 VANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGR 595 (645)
Q Consensus 516 l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~l 595 (645)
+..+++|+.|++++|.+.+. + . +..+++|+.|+. ..|.+.+..| +. . -..+..+.++.|.+
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~-~------l~~l~~L~~L~l---~~n~l~~~~~--~~-----~-l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-S-S------LANLTNINWLSA---GHNQISDLTP--LA-----N-LTRITQLGLNDQAW 387 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-G------GTTCTTCCEEEC---CSSCCCBCGG--GT-----T-CTTCCEEECCCEEE
T ss_pred hccCccCCEeECCCCccCCc-h-h------hccCCCCCEEeC---CCCccCccch--hh-----c-CCCCCEEeccCCcc
Confidence 45666666666666666652 1 2 455666666654 3444555444 11 1 13444555555555
Q ss_pred cc
Q 006427 596 SG 597 (645)
Q Consensus 596 SG 597 (645)
.+
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.3e-19 Score=184.30 Aligned_cols=223 Identities=19% Similarity=0.215 Sum_probs=182.4
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN 440 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls 440 (645)
.+..+++..+.+........+ .+|+.|++++|.++.++.+..+++|+.|+|++|.++.++.....++|++|+|++|.|+
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHH-TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHHhcCcccccccccccc-cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC
Confidence 344556666666655444433 6899999999999999999999999999999999998764444489999999999999
Q ss_pred CCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccchhHh
Q 006427 441 TIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKALGQL 515 (645)
Q Consensus 441 ~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~ 515 (645)
+++. +..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|++++ .+..+++|+.|+|++|+|+++ .+..
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 176 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL--PEGV 176 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc--CHHH
Confidence 9864 88999999999999999988766 789999999999999999983 378999999999999999986 4466
Q ss_pred hhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCC
Q 006427 516 VANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGR 595 (645)
Q Consensus 516 l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~l 595 (645)
+..+++|+.|+|++|.+.+..+.. +..+++|++|+. ..|.+.+.. ..+..+.+..|.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~l---~~N~~~~~~-------------~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGV------FDRLTSLQYIWL---HDNPWDCTC-------------PGIRYLSEWINKH 234 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC---CSSCBCCCT-------------TTTHHHHHHHHHT
T ss_pred hcCCccCCEEECCCCcCCccCHHH------HhCCcCCCEEEc---cCCCccccC-------------cHHHHHHHHHHhC
Confidence 789999999999999999855543 677899999886 444443322 2355667888999
Q ss_pred ccCccCCCCCCCC
Q 006427 596 SGSLPSSNQRSST 608 (645)
Q Consensus 596 SG~iPss~~~~s~ 608 (645)
+|.+|...+.-..
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 9999998875444
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.9e-20 Score=190.18 Aligned_cols=202 Identities=23% Similarity=0.245 Sum_probs=169.5
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
...++.+|+.|++++|.+.....+.. .++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....++|++|+|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~-l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred chhhcCcccEEEccCCCcccChhHhc-CCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 45678999999999999987765443 37999999999999998889999999999999999998876444589999999
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
++|.|+.++.+..+++|+.|+|++|.|+.+ ..+..+++|++|+|++|.|+++..+..+++|+.|+|++|.|+++ +.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l---~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC---hh
Confidence 999999998899999999999999999988 47889999999999999999996699999999999999999985 33
Q ss_pred hhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhh
Q 006427 515 LVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRA 565 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~ 565 (645)
+..+++|+.|+|++|++.. .|...+. .+..++.+..++...+.++.+
T Consensus 196 -l~~l~~L~~L~l~~n~i~~-~~~~~~~--~l~~~~~l~~l~~~~i~~~~~ 242 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQECLN-KPINHQS--NLVVPNTVKNTDGSLVTPEII 242 (291)
T ss_dssp -GTTCTTCSEEEEEEEEEEC-CCEECCS--EEEEECCCBCTTSCBCCEEEE
T ss_pred -hccCCCCCEEECcCCcccC-Ccccccc--ccEEcceEECCCCCCcCCCee
Confidence 7899999999999999876 3322100 022245566777766666544
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=2.4e-19 Score=200.65 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=187.6
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchhh--ccCCCccEEEecCCCCCcC---C-CCCCCCCCCEEEccCCcCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIR--SLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVH 419 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~--~L~~~L~~L~Ls~N~Lt~I---P-sL~~L~~L~~LdLs~N~Lt~ 419 (645)
..+...++..+..+++|+.|+|++|.+....... .-.++|+.|+|++|.++.+ + .+..+++|+.|+|++|.+..
T Consensus 311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 4455556678888999999999999776332222 2237899999999999865 4 58899999999999999988
Q ss_pred CCCCCCC--CCCCEEecCCCCCCCC--cC-CCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc-----c
Q 006427 420 IPTGSMP--KGLHTLNLSRNKINTI--EG-LREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI-----E 488 (645)
Q Consensus 420 ip~~~~~--~sL~~LdLs~N~Ls~l--p~-L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l-----~ 488 (645)
+++..+. ++|+.|+|++|.+++. +. +..+++|++|+|++|.++.+ |..+..+++|++|+|++|.+++. .
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence 8776654 8899999999998865 22 78899999999999999855 44588899999999999998762 3
Q ss_pred cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhh
Q 006427 489 GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAREL 568 (645)
Q Consensus 489 ~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~ 568 (645)
.+..+++|++|+|++|.++++ .|..+..+++|+.|+|++|.+++.+|.. +..++.| +|+. ..|.+.+.
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~l~~L-~L~L---~~N~l~~~ 538 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSI--DQHAFTSLKMMNHVDLSHNRLTSSSIEA------LSHLKGI-YLNL---ASNHISII 538 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCGGGGGG------GTTCCSC-EEEC---CSSCCCCC
T ss_pred hhccCCCccEEECCCCccCcc--ChhhhccccCCCEEECCCCccCcCChhH------hCccccc-EEEC---cCCccccc
Confidence 578889999999999999886 5678889999999999999999877665 6667777 6664 67777777
Q ss_pred hhHHHHHHHhcCCCCccccccccccCCccCcc
Q 006427 569 LTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLP 600 (645)
Q Consensus 569 i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iP 600 (645)
.+..+... ..++.+.++.|.+.+..+
T Consensus 539 ~~~~~~~l------~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 539 LPSLLPIL------SQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CGGGHHHH------HTSSEEECTTCCEECSGG
T ss_pred CHhhcccC------CCCCEEeCCCCCccccCC
Confidence 77766653 456778888888887644
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=4.8e-19 Score=179.58 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecC
Q 006427 361 RRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs 435 (645)
+|+.|+|++|.+...... ..-.++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++..+. ++|++|+|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 344455555544433221 111144455555555554443 244445555555555555444433332 445555555
Q ss_pred CCCCCCCcC--CCCCCCCcEEEccCCcccc--ccCcCcCCCCCcEEEccCCCCCC
Q 006427 436 RNKINTIEG--LREMTRLRVLDLSYNRIFR--IGHGLSNCTLIKELYLAGNKISD 486 (645)
Q Consensus 436 ~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~--LP~~l~~L~sL~~L~Ls~N~Ls~ 486 (645)
+|.++.++. +..+++|++|+|++|.++. +|..+..+++|++|+|++|+|++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 555444422 4444555555555555443 33344444555555555555444
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=2.3e-20 Score=220.61 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCc-CCC--CCCC--------CCCCCCCEEecCCCCCCCCcC---CC
Q 006427 383 SSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNF-IVH--IPTG--------SMPKGLHTLNLSRNKINTIEG---LR 446 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~-Lt~--ip~~--------~~~~sL~~LdLs~N~Ls~lp~---L~ 446 (645)
++|+.|+|++|.+. .+| .|..|++|+.|+|++|. |++ +|.. ...++|+.|+|++|.|+.+|. +.
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~ 570 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh
Confidence 45555555555543 344 35555555555555555 443 2221 011355666666666555543 55
Q ss_pred CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCC-CCEEECcCCCCCCccchhHhhhcCCC--C
Q 006427 447 EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLK-LTVLDMSFNKITTTKALGQLVANYQS--L 522 (645)
Q Consensus 447 ~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~-L~~LdLS~N~Ls~~~~LP~~l~~L~s--L 522 (645)
.+++|+.|+|++|.|+.|| .++.+++|+.|+|++|.|+.+ ..+..+++ |+.|+|++|.|+. +|..+..+.. |
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~---lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS---CCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc---CchhhhccccCCC
Confidence 5666666666666666555 555566666666666666544 23555555 6666666666553 4444444432 6
Q ss_pred cEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCccCC
Q 006427 523 LALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSS 602 (645)
Q Consensus 523 ~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss 602 (645)
+.|+|++|.+.+.+|.-. .......+++|+.|+. ..|.+. .+|..+... ...+..+.++.|.+. .+|..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~-~~l~~~~~~~L~~L~L---s~N~L~-~lp~~~~~~-----l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNIS-CSMDDYKGINASTVTL---SYNEIQ-KFPTELFAT-----GSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp EEEECCSSCTTTTSSSCS-SCTTTCCCCCEEEEEC---CSSCCC-SCCHHHHHT-----TCCCSEEECCSCCCS-CCCTT
T ss_pred CEEECcCCcCCCccccch-hhhccccCCCcCEEEc---cCCcCC-ccCHHHHcc-----CCCCCEEECCCCcCC-ccChH
Confidence 666666666655443210 0000012335666654 444554 344444321 256778889999888 77776
Q ss_pred CCC
Q 006427 603 NQR 605 (645)
Q Consensus 603 ~~~ 605 (645)
...
T Consensus 716 ~~~ 718 (876)
T 4ecn_A 716 SLK 718 (876)
T ss_dssp SSS
T ss_pred Hhc
Confidence 543
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2.2e-19 Score=196.07 Aligned_cols=194 Identities=27% Similarity=0.308 Sum_probs=158.2
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccc
Q 006427 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls 462 (645)
++|+.|+|++|.++.++.+..+++|+.|++++|.++.+++....++|+.|+|++|.++.++.+..+++|+.|+|++|.++
T Consensus 177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred CCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc
Confidence 67888888888888887788888888888888888877664445789999999999988888888999999999999998
Q ss_pred cccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHH
Q 006427 463 RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLR 542 (645)
Q Consensus 463 ~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~ 542 (645)
.++. +..+++|+.|+|++|.+++++.+..+++|+.|+|++|.++++. . +..+++|+.|+|++|.+.+..|
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~----- 326 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS---P-ISNLKNLTYLTLYFNNISDISP----- 326 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG---G-GGGCTTCSEEECCSSCCSCCGG-----
T ss_pred cchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch---h-hcCCCCCCEEECcCCcCCCchh-----
Confidence 7764 8888999999999999998866888999999999999998852 2 7889999999999999987543
Q ss_pred HHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCCccCcc
Q 006427 543 KAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSLP 600 (645)
Q Consensus 543 ~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~iP 600 (645)
+..+++|+.|+. ..|.+.+. + .+.. -..++.+.++.|.++|.+|
T Consensus 327 ---~~~l~~L~~L~l---~~n~l~~~-~------~l~~-l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 327 ---VSSLTKLQRLFF---YNNKVSDV-S------SLAN-LTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ---GGGCTTCCEEEC---CSSCCCCC-G------GGTT-CTTCCEEECCSSCCCBCGG
T ss_pred ---hccCccCCEeEC---CCCccCCc-h------hhcc-CCCCCEEeCCCCccCccch
Confidence 457889998886 44455543 1 1222 3677888999999999887
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=7.4e-19 Score=193.05 Aligned_cols=222 Identities=19% Similarity=0.213 Sum_probs=162.6
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+..+++|+.|+|++|.+.+.. + ...++|++|+|++|.|+.++ ++.+++|++|+|++|.|+.++ ....++|++|+|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~-~-~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l 134 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD-L-SQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNC 134 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC-C-TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred hhcccCCCCEEEccCCcCCeEc-c-ccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEEC
Confidence 5777888888888888877753 2 22367888888888888775 778888888888888888775 223367888888
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchh
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
++|.|++++ ++.+++|++|++++|. +..+ .+..+++|+.|+|++|.|++++ +..+++|+.|+|++|.|+++ +
T Consensus 135 ~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 135 ARNTLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp TTSCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC---C
T ss_pred CCCccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee---c
Confidence 888888874 7788888888888884 4455 4777888999999999888876 78888899999999998884 2
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHH-HhcCCCCccccccccc
Q 006427 514 QLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKA-VLGNSSQSSQRKAVKR 592 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~-~l~~~~~sl~~~~l~~ 592 (645)
++.+++|+.|+|++|.+++ +| ++.+++|++|+. ..|.+.+..+..+... .+......+..+.++.
T Consensus 208 --l~~l~~L~~L~Ls~N~l~~-ip--------~~~l~~L~~L~l---~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 208 --LNQNIQLTFLDCSSNKLTE-ID--------VTPLTQLTYFDC---SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSC-CC--------CTTCTTCSEEEC---CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred --cccCCCCCEEECcCCcccc-cC--------ccccCCCCEEEe---eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence 6788999999999999988 55 456788888876 4555555432211110 0001123556778888
Q ss_pred cCCccCccC
Q 006427 593 TGRSGSLPS 601 (645)
Q Consensus 593 n~lSG~iPs 601 (645)
|.+.|.+|.
T Consensus 274 n~~~~~~~~ 282 (457)
T 3bz5_A 274 NTQLIYFQA 282 (457)
T ss_dssp CTTCCEEEC
T ss_pred CccCCcccc
Confidence 888888884
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=1e-18 Score=185.88 Aligned_cols=207 Identities=20% Similarity=0.212 Sum_probs=144.6
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPT 422 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~ 422 (645)
..+...++..+.++++|+.|+|++|.+..++.-. .-.++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.++.
T Consensus 103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG
T ss_pred CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc
Confidence 4455566667778888888888888777654422 22367888888888888765 47778888888888887776532
Q ss_pred CCC---------------------------------------CCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCcccc
Q 006427 423 GSM---------------------------------------PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463 (645)
Q Consensus 423 ~~~---------------------------------------~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~ 463 (645)
..+ .++|+.|+|++|.+++++.+..+++|++|+|++|.|+.
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC
Confidence 211 13566666666666666667777888888888888875
Q ss_pred c-cCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHH
Q 006427 464 I-GHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQL 541 (645)
Q Consensus 464 L-P~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l 541 (645)
+ |..+..+++|++|+|++|.|+++ ..+..+++|++|+|++|+|+. +|..+..+++|+.|+|++|+|+. ++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~L~~N~i~~-~~---- 334 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNSIVT-LK---- 334 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSCCCC-CC----
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee---cCccccccCcCCEEECCCCccce-eC----
Confidence 5 44577788888888888888776 335667788888888888876 55566777888888888888865 32
Q ss_pred HHHHhcCCCCCceecccCCChhhhhh
Q 006427 542 RKAVCSLLPKLVYLNKQPIKPQRARE 567 (645)
Q Consensus 542 ~~~vl~~L~~L~~Ld~~~Is~n~~~g 567 (645)
+..+++|+.|+. ..|.+..
T Consensus 335 ----~~~~~~L~~L~l---~~N~~~~ 353 (390)
T 3o6n_A 335 ----LSTHHTLKNLTL---SHNDWDC 353 (390)
T ss_dssp ----CCTTCCCSEEEC---CSSCEEH
T ss_pred ----chhhccCCEEEc---CCCCccc
Confidence 345677777765 4455444
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.2e-19 Score=184.52 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=163.2
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC---CCCCCCCCCEEEccCCcCCCCCCCCCC--C
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMP--K 427 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP---sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~ 427 (645)
+..+..+.+|+.|+|++|.+........-.++|+.|+|++|.++.++ .+..+++|+.|+|++|.+..+.+..+. +
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 45677889999999999998866543334489999999999999876 488999999999999999987776654 8
Q ss_pred CCCEEecCCCCCCC--Cc-CCCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEEC
Q 006427 428 GLHTLNLSRNKINT--IE-GLREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDM 501 (645)
Q Consensus 428 sL~~LdLs~N~Ls~--lp-~L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdL 501 (645)
+|++|+|++|.+++ ++ .+..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|.|+++ ..+..+++|+.|+|
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 99999999999986 34 488999999999999999977 45689999999999999999987 35888999999999
Q ss_pred cCCCCCCccchhHhhhcCC-CCcEEEccCCCCCcCCChhHHHHHH
Q 006427 502 SFNKITTTKALGQLVANYQ-SLLALNLLGNPIQSNISDDQLRKAV 545 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~-sL~~LdLs~N~L~g~iP~~~l~~~v 545 (645)
++|.|++. .|..+..++ +|+.|+|++|++.|.++...+..++
T Consensus 231 ~~N~l~~~--~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 231 SLNHIMTS--KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp TTSCCCBC--SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CCCCCccc--CHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 99999986 567788884 9999999999999987665555443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=191.28 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=151.1
Q ss_pred CCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCCC--CCCCCCCCEEEccCCcCCCCCC-CC
Q 006427 349 GKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIPT--ISHFSSLRSVNLSNNFIVHIPT-GS 424 (645)
Q Consensus 349 ~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IPs--L~~L~~L~~LdLs~N~Lt~ip~-~~ 424 (645)
...++..+.++++|+.|+|++|.+.....- ..-.++|++|+|++|.|+.+|. +..+++|++|+|++|.|+.++. ..
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 144 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144 (353)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS
T ss_pred cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh
Confidence 334444667778888888888877765332 1122678888888888887772 7778888888888888887776 33
Q ss_pred CC--CCCCEEecCCC-CCCCCc--CCCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCcc--cccCCCCC
Q 006427 425 MP--KGLHTLNLSRN-KINTIE--GLREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDIE--GLHRLLKL 496 (645)
Q Consensus 425 ~~--~sL~~LdLs~N-~Ls~lp--~L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L 496 (645)
+. ++|++|+|++| .+..++ .+..+++|++|+|++|.++.+ |..+..+++|++|+|++|.++.++ .+..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 32 77888888887 466553 477788888888888888755 555777888888888888877662 24456778
Q ss_pred CEEECcCCCCCCcc-----------------------------chhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006427 497 TVLDMSFNKITTTK-----------------------------ALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 497 ~~LdLS~N~Ls~~~-----------------------------~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
+.|+|++|.+++.. .+|..+..+++|+.|+|++|.++. +|.. ++.
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~-----~~~ 298 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDG-----IFD 298 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTT-----TTT
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHH-----HHh
Confidence 88888888777632 356778889999999999999984 7765 346
Q ss_pred CCCCCceecccCCChhhhhhhhh
Q 006427 548 LLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 548 ~L~~L~~Ld~~~Is~n~~~g~i~ 570 (645)
.+++|++|+. ..|.+.+..+
T Consensus 299 ~l~~L~~L~L---~~N~~~~~~~ 318 (353)
T 2z80_A 299 RLTSLQKIWL---HTNPWDCSCP 318 (353)
T ss_dssp TCTTCCEEEC---CSSCBCCCHH
T ss_pred cCCCCCEEEe---eCCCccCcCC
Confidence 7888888876 4555555443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.5e-19 Score=186.69 Aligned_cols=222 Identities=15% Similarity=0.143 Sum_probs=179.5
Q ss_pred cCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCC
Q 006427 360 TRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~ 436 (645)
.+|+.|+|++|.+.....- ..-.++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.++...+ ++|++|+|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~ 132 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCC
Confidence 5789999999998876432 222378999999999999874 69999999999999999999887766 7999999999
Q ss_pred CCCCCCcC--CCCCCCCcEEEccCCcccc---ccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccc
Q 006427 437 NKINTIEG--LREMTRLRVLDLSYNRIFR---IGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKA 511 (645)
Q Consensus 437 N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~---LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~ 511 (645)
|.|+.++. +..+++|++|+|++|.++. .+..+..+ +|++|++++|.++.++.. ..++|+.|+|++|.|+++
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~-- 208 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNKIQAI-- 208 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSCCCCC--
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCcCCcc--
Confidence 99998864 8899999999999999973 34447777 999999999999998432 127899999999999986
Q ss_pred hhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcccccccc
Q 006427 512 LGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVK 591 (645)
Q Consensus 512 LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~ 591 (645)
.+..+..+++|+.|+|++|.+.+..+.. +..+++|+.|+. ..|.+. .+|..+.. ...++.+.++
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L---~~N~l~-~lp~~l~~------l~~L~~L~l~ 272 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGS------LSFLPTLRELHL---DNNKLS-RVPAGLPD------LKLLQVVYLH 272 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTG------GGGCTTCCEEEC---CSSCCC-BCCTTGGG------CTTCCEEECC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhH------hhCCCCCCEEEC---CCCcCe-ecChhhhc------CccCCEEECC
Confidence 4477899999999999999999865554 678899999987 445554 34443332 3567888999
Q ss_pred ccCCccCccCC
Q 006427 592 RTGRSGSLPSS 602 (645)
Q Consensus 592 ~n~lSG~iPss 602 (645)
.|.+.+.-+..
T Consensus 273 ~N~l~~~~~~~ 283 (332)
T 2ft3_A 273 TNNITKVGVND 283 (332)
T ss_dssp SSCCCBCCTTS
T ss_pred CCCCCccChhH
Confidence 99988654443
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=197.47 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=71.5
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHh
Q 006427 469 SNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVC 546 (645)
Q Consensus 469 ~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl 546 (645)
..+++|++|+|++|.+++. ..+..+++|+.|+|++|+|++++.+|..+..+++|+.|+|++|.+.+.+|.. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----TC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----CC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----hh
Confidence 5677889999999988884 5678888999999999999887667777888999999999999998766654 24
Q ss_pred cCCCCCceecccCCChhhhhhhhh
Q 006427 547 SLLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 547 ~~L~~L~~Ld~~~Is~n~~~g~i~ 570 (645)
..+++|+.|+. +.|.+.+.++
T Consensus 425 ~~l~~L~~L~l---~~n~l~~~~~ 445 (562)
T 3a79_B 425 AWAESILVLNL---SSNMLTGSVF 445 (562)
T ss_dssp CCCTTCCEEEC---CSSCCCGGGG
T ss_pred cCcccCCEEEC---CCCCCCcchh
Confidence 55677777765 4444444443
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=4.2e-19 Score=180.02 Aligned_cols=191 Identities=20% Similarity=0.189 Sum_probs=156.9
Q ss_pred CCCCCCCChhhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCC
Q 006427 345 SPETGKSPARSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 345 ~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip 421 (645)
...+...++..+.++++|+.|+|++|.+.....- ..-.++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence 3445555566788899999999999988866542 222378999999999999876 5899999999999999999887
Q ss_pred CCCCC--CCCCEEecCCCCCCC--Cc-CCCCCCCCcEEEccCCccccccC-cCcCCCCCc----EEEccCCCCCCc-ccc
Q 006427 422 TGSMP--KGLHTLNLSRNKINT--IE-GLREMTRLRVLDLSYNRIFRIGH-GLSNCTLIK----ELYLAGNKISDI-EGL 490 (645)
Q Consensus 422 ~~~~~--~sL~~LdLs~N~Ls~--lp-~L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~----~L~Ls~N~Ls~l-~~l 490 (645)
...+. ++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+.++. .+..+.+|+ .|+|++|.|+++ ...
T Consensus 117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc
Confidence 75554 899999999999987 34 48899999999999999997764 366666666 899999999987 444
Q ss_pred cCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 491 HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 491 ~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
....+|+.|+|++|.|+++ .+..+..+++|+.|+|++|++.|.++
T Consensus 197 ~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCSCCEEEEECCSSCCSCC--CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCCcccEEECCCCceeec--CHhHhcccccccEEEccCCcccccCC
Confidence 5556899999999999986 33567889999999999999998776
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.3e-18 Score=196.37 Aligned_cols=207 Identities=20% Similarity=0.202 Sum_probs=145.5
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPT 422 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~ 422 (645)
..+.+.++..+..+++|+.|+|++|.+..++.-. .-.++|++|+|++|.|+.++ .|..+++|+.|+|++|.|+.++.
T Consensus 109 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG
T ss_pred CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh
Confidence 4455566666677777777777777776554322 22367777777777777665 46777777777777777765542
Q ss_pred CCC---------------------------------------CCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCcccc
Q 006427 423 GSM---------------------------------------PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463 (645)
Q Consensus 423 ~~~---------------------------------------~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~ 463 (645)
..+ .++|+.|+|++|.|++++.+..+++|+.|+|++|.|+.
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence 211 13466666666666666667778888888888888885
Q ss_pred c-cCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHH
Q 006427 464 I-GHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQL 541 (645)
Q Consensus 464 L-P~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l 541 (645)
+ |..|+.+++|+.|+|++|.|+++ ..+..+++|+.|+|++|.|+. +|..+..+++|+.|+|++|.|.+. +
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~l~~L~~L~L~~N~l~~~-~---- 340 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNSIVTL-K---- 340 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSCCCCC-C----
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc---cCcccccCCCCCEEECCCCCCCCc-C----
Confidence 5 55688888888888888888887 345667888888888888886 566678888888888888888763 3
Q ss_pred HHHHhcCCCCCceecccCCChhhhhh
Q 006427 542 RKAVCSLLPKLVYLNKQPIKPQRARE 567 (645)
Q Consensus 542 ~~~vl~~L~~L~~Ld~~~Is~n~~~g 567 (645)
+..+++|+.|+. ..|.+.+
T Consensus 341 ----~~~~~~L~~L~l---~~N~~~~ 359 (597)
T 3oja_B 341 ----LSTHHTLKNLTL---SHNDWDC 359 (597)
T ss_dssp ----CCTTCCCSEEEC---CSSCEEH
T ss_pred ----hhhcCCCCEEEe---eCCCCCC
Confidence 345777887775 4454443
No 54
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=9.5e-19 Score=198.06 Aligned_cols=189 Identities=18% Similarity=0.214 Sum_probs=153.3
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN 440 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls 440 (645)
+|+.|+|++|.+.+++. .+.++|+.|+|++|.|+.+| ..+++|+.|+|++|.|+.++. +..+|++|+|++|.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~--~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD--NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCS--CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccCH--hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCC
Confidence 88999999998887433 23478999999999999888 668899999999999998877 5568999999999999
Q ss_pred CCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCC
Q 006427 441 TIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQ 520 (645)
Q Consensus 441 ~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~ 520 (645)
+++. .+++|++|+|++|.|+.||. .+++|++|+|++|.|++++.+. ++|+.|+|++|+|+.+ |. +..
T Consensus 134 ~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~l---p~-~~~-- 200 (571)
T 3cvr_A 134 MLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESL---PA-VPV-- 200 (571)
T ss_dssp CCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSC---CC-CC---
T ss_pred CCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCch---hh-HHH--
Confidence 8877 78899999999999998886 5678999999999998886554 8899999999999874 44 332
Q ss_pred CC-------cEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHh
Q 006427 521 SL-------LALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVL 578 (645)
Q Consensus 521 sL-------~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l 578 (645)
+| +.|+|++|.|+. +|.. +..+++|+.|+. ..|.+.+.+|..+.....
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~-lp~~------l~~l~~L~~L~L---~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITH-IPEN------ILSLDPTCTIIL---EDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------CCEEEECCSSCCCC-CCGG------GGGSCTTEEEEC---CSSSCCHHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCccee-cCHH------HhcCCCCCEEEe---eCCcCCCcCHHHHHHhhc
Confidence 56 999999999985 7876 556888888885 778888888888887543
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=194.97 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=68.0
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHh
Q 006427 469 SNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVC 546 (645)
Q Consensus 469 ~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl 546 (645)
..+++|++|+|++|.+++. ..+..+++|+.|+|++|+|++++.+|..+..+++|++|+|++|.+.+.+|.. .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----DC 395 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----SC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----hh
Confidence 5667888888888888873 5678888888888888888876567777888888888888888888766643 24
Q ss_pred cCCCCCceecccCCChhhhhhhhh
Q 006427 547 SLLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 547 ~~L~~L~~Ld~~~Is~n~~~g~i~ 570 (645)
..+++|+.|+. ..|.+.+.++
T Consensus 396 ~~l~~L~~L~L---s~N~l~~~~~ 416 (520)
T 2z7x_B 396 SWTKSLLSLNM---SSNILTDTIF 416 (520)
T ss_dssp CCCTTCCEEEC---CSSCCCGGGG
T ss_pred ccCccCCEEEC---cCCCCCcchh
Confidence 55667776665 3444444433
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.6e-18 Score=172.57 Aligned_cols=165 Identities=23% Similarity=0.360 Sum_probs=144.1
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEcc
Q 006427 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS 457 (645)
...+.++++++.|+.+| .+. ++|+.|+|++|.|+.+++..+. ++|++|+|++|.|++++. |..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 35678999999999999 444 6899999999999999887665 899999999999998753 8899999999999
Q ss_pred CCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 458 YNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 458 ~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
+|.|+.++.. |..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+++ .+..+..+++|+.|+|++|.|.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI--PAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc--CHHHcCcCcCCCEEECCCCcCCc
Confidence 9999988765 789999999999999999983 378899999999999999986 33578999999999999999997
Q ss_pred CCChhHHHHHHhcCCCCCceecc
Q 006427 535 NISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 535 ~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
..+.. +..+++|+.|+.
T Consensus 170 ~~~~~------~~~l~~L~~L~l 186 (251)
T 3m19_A 170 VPHGA------FDRLGKLQTITL 186 (251)
T ss_dssp CCTTT------TTTCTTCCEEEC
T ss_pred cCHHH------HhCCCCCCEEEe
Confidence 55444 677889998876
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=3.7e-18 Score=187.50 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=145.1
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006427 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
+..+.+|+.|+|++|.+.+.. +. -.++|++|+|++|.|+.+| ++.+++|+.|+|++|.|++++ ....++|++|+|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~-~~-~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD-VT-PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCH 156 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC-CT-TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECT
T ss_pred cccCCCCCEEECcCCCCceee-cC-CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECC
Confidence 788999999999999999864 32 2379999999999999987 899999999999999999985 3334789999999
Q ss_pred CCC-CCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006427 436 RNK-INTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 436 ~N~-Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
+|. +..+ .+..+++|++|+|++|.|+.+| +..+++|+.|++++|.|+++ .+..+++|+.|+|++|+|++ +|
T Consensus 157 ~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~---ip- 228 (457)
T 3bz5_A 157 LNKKITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE---ID- 228 (457)
T ss_dssp TCSCCCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC---CC-
T ss_pred CCCccccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc---cC-
Confidence 994 4455 6888999999999999999887 78889999999999999988 48888999999999999998 44
Q ss_pred hhhcCCCCcEEEccCCCCCcC
Q 006427 515 LVANYQSLLALNLLGNPIQSN 535 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g~ 535 (645)
+..+++|+.|+|++|.+++.
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCC
T ss_pred -ccccCCCCEEEeeCCcCCCc
Confidence 68899999999999999884
No 58
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.5e-18 Score=172.90 Aligned_cols=174 Identities=22% Similarity=0.336 Sum_probs=147.3
Q ss_pred CccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEccC
Q 006427 384 SSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY 458 (645)
Q Consensus 384 ~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~ 458 (645)
..+.+++++++++.+|. + .++|+.|+|++|.|+.+++..+. ++|++|+|++|.|+.++. |..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34578899999999984 4 38899999999999998776654 789999999999998854 78899999999999
Q ss_pred CccccccCc-CcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCC
Q 006427 459 NRIFRIGHG-LSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNI 536 (645)
Q Consensus 459 N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~i 536 (645)
|.|+.++.. |..+++|++|+|++|.|+.+ ..+..+++|++|+|++|+|+.+ .+..+..+++|+.|+|.+|++.|.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI--PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc--CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999988766 78899999999999999988 5688999999999999999986 3367889999999999999999988
Q ss_pred C-hhHHHHHHhcCCCCCceecccCCC
Q 006427 537 S-DDQLRKAVCSLLPKLVYLNKQPIK 561 (645)
Q Consensus 537 P-~~~l~~~vl~~L~~L~~Ld~~~Is 561 (645)
+ ...++.++......+..++...+.
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~~g~~v~ 201 (229)
T 3e6j_A 176 RDIMYLRNWVADHTSIAMRWDGKAVN 201 (229)
T ss_dssp GGGHHHHHHHHHCGGGEEEESSSEEE
T ss_pred chhHHHHHHHHhCccccccccCcccC
Confidence 6 555777777777777788775443
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=8.4e-20 Score=201.98 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=174.6
Q ss_pred ccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCC
Q 006427 359 LTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N 437 (645)
.++|+.|+|++|.+...... ..-.++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.+++. ++|++|+|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCC
Confidence 34899999999999876532 223389999999999999776799999999999999999987754 78999999999
Q ss_pred CCCCCcCCCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCCCCCc--cccc-CCCCCCEEECcCCCCCCccchh
Q 006427 438 KINTIEGLREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNKISDI--EGLH-RLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 438 ~Ls~lp~L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~Ls~l--~~l~-~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
.|++++. ..+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|.|+++ ..+. .+++|+.|+|++|.|+++.
T Consensus 110 ~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--- 185 (487)
T 3oja_A 110 NISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--- 185 (487)
T ss_dssp CCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---
T ss_pred cCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc---
Confidence 9998754 3568999999999999976 44688999999999999999986 3454 7899999999999999853
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcccccccccc
Q 006427 514 QLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRT 593 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~~n 593 (645)
. +..+++|+.|+|++|.|++ +|.. +..+++|+.|+. +.|.+.+ +|..+. . ...+..+.+..|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~------~~~l~~L~~L~L---s~N~l~~-lp~~l~-----~-l~~L~~L~l~~N 247 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPE------FQSAAGVTWISL---RNNKLVL-IEKALR-----F-SQNLEHFDLRGN 247 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGG------GGGGTTCSEEEC---TTSCCCE-ECTTCC-----C-CTTCCEEECTTC
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHh------HcCCCCccEEEe---cCCcCcc-cchhhc-----c-CCCCCEEEcCCC
Confidence 2 3469999999999999998 5555 677899999986 4566654 333221 1 245667788888
Q ss_pred CCc-cCcc
Q 006427 594 GRS-GSLP 600 (645)
Q Consensus 594 ~lS-G~iP 600 (645)
.+. |.+|
T Consensus 248 ~l~c~~~~ 255 (487)
T 3oja_A 248 GFHCGTLR 255 (487)
T ss_dssp CBCHHHHH
T ss_pred CCcCcchH
Confidence 887 4443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=185.85 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=171.2
Q ss_pred cCCCEEecCCccccccch-hhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCC--CCCCCEEec
Q 006427 360 TRRSEINLSEEILHANSV-IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNL 434 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~-l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~--~~sL~~LdL 434 (645)
.+|+.|+|++|.+..... ...-.++|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.++...+ .++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 489999999999987654 2222389999999999999875 59999999999999999999887543 389999999
Q ss_pred CCCCCCCCcC---CCCCCCCcEEEccCC-ccccccC-cCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCC
Q 006427 435 SRNKINTIEG---LREMTRLRVLDLSYN-RIFRIGH-GLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 435 s~N~Ls~lp~---L~~L~sL~~LdLS~N-~Ls~LP~-~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls 507 (645)
++|.|+.++. +..+++|++|+|++| .++.++. .+..+++|++|+|++|.++++ ..+..+++|++|+|++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999998864 889999999999999 5777754 589999999999999999886 56889999999999999998
Q ss_pred CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc--CCChhhhhhhhhHHHHHHHhcCCCCcc
Q 006427 508 TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ--PIKPQRARELLTDSIAKAVLGNSSQSS 585 (645)
Q Consensus 508 ~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~--~Is~n~~~g~i~~~i~~~~l~~~~~sl 585 (645)
.++ ...+..+++|+.|+|++|.+.+..+.. +. ....+..++.++.. .+..+.+. .+|..+.. -..+
T Consensus 212 ~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~--~~~~~~~l~~l~L~~~~l~~~~l~-~l~~~l~~------l~~L 279 (353)
T 2z80_A 212 LLL--EIFVDVTSSVECLELRDTDLDTFHFSE-LS--TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ------ISGL 279 (353)
T ss_dssp THH--HHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHHHHH-HHHHHHHT------CTTC
T ss_pred cch--hhhhhhcccccEEECCCCccccccccc-cc--cccccchhhccccccccccCcchh-hhHHHHhc------ccCC
Confidence 742 244567999999999999998744332 11 11223444444332 23333332 23333322 2456
Q ss_pred ccccccccCCccCccCC
Q 006427 586 QRKAVKRTGRSGSLPSS 602 (645)
Q Consensus 586 ~~~~l~~n~lSG~iPss 602 (645)
+.+.++.|.+. .+|..
T Consensus 280 ~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 280 LELEFSRNQLK-SVPDG 295 (353)
T ss_dssp CEEECCSSCCC-CCCTT
T ss_pred CEEECCCCCCC-ccCHH
Confidence 66777777776 45544
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.6e-18 Score=187.44 Aligned_cols=144 Identities=18% Similarity=0.216 Sum_probs=115.6
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+.++++|+.|+|++|.+.+++. ...+|++|+|++|.++.+|.+..+++|+.|++++|.+++++.. +.+|++|+|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l 222 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA 222 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence 47889999999999999886443 3368999999999999999999999999999999999987653 368999999
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCC
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~ 508 (645)
++|.++.++.+..+++|++|++++|.++.+|.. +++|+.|++++|.+++++.. +.+|+.|+|++|.+++
T Consensus 223 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 223 GNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred cCCcCCcccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 999999888889999999999999999888753 35677777777777765332 2455555555555554
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2.1e-19 Score=201.24 Aligned_cols=229 Identities=15% Similarity=0.045 Sum_probs=154.4
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCC--CCCC--CCCCC
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIP--TGSM--PKGLH 430 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip--~~~~--~~sL~ 430 (645)
.+..+.+|+.|+|++|.+..++.+ ..++|+.|++++|.+.....+..+++|+.|+|++|.++.+. +..+ .++|+
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 344455566666666655444422 23556666666663332224556667777777777666542 1111 26777
Q ss_pred EEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCC
Q 006427 431 TLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 431 ~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~ 505 (645)
+|+|++|.++.++ .+..+++|+.|+|++|.+..++. .+..+++|++|+|++|.+++. ..+..+++|++|+|++|.
T Consensus 380 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 7777777777664 47777888888888888875543 477788888888888887764 457778888888888888
Q ss_pred CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcc
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSS 585 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl 585 (645)
+++. .+|..+..+++|+.|+|++|.+++..|.. +..+++|+.|+. ..|.+.+..|..+.. ...+
T Consensus 460 l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L---s~N~l~~~~~~~~~~------l~~L 523 (606)
T 3vq2_A 460 FKDN-TLSNVFANTTNLTFLDLSKCQLEQISWGV------FDTLHRLQLLNM---SHNNLLFLDSSHYNQ------LYSL 523 (606)
T ss_dssp EGGG-EECSCCTTCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEEC---CSSCCSCEEGGGTTT------CTTC
T ss_pred CCCc-chHHhhccCCCCCEEECCCCcCCccChhh------hcccccCCEEEC---CCCcCCCcCHHHccC------CCcC
Confidence 8761 14667788888888888888888866655 677888888876 566677766655543 2567
Q ss_pred ccccccccCCccCccCC
Q 006427 586 QRKAVKRTGRSGSLPSS 602 (645)
Q Consensus 586 ~~~~l~~n~lSG~iPss 602 (645)
+.+.++.|.++ .+|..
T Consensus 524 ~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGI 539 (606)
T ss_dssp CEEECTTSCCC-CEESC
T ss_pred CEEECCCCcCc-ccCHh
Confidence 78889999888 56665
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=5.9e-19 Score=182.09 Aligned_cols=181 Identities=27% Similarity=0.322 Sum_probs=156.6
Q ss_pred EEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc
Q 006427 364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE 443 (645)
Q Consensus 364 ~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp 443 (645)
.+.+..+.+........+ ++|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++....++|++|+|++|.|+.++
T Consensus 28 ~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHTTCSCTTSEECHHHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG
T ss_pred HHHhcCCCcccccchhhc-CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh
Confidence 345566655554444333 6889999999999999999999999999999999999877444489999999999999999
Q ss_pred CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCc
Q 006427 444 GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLL 523 (645)
Q Consensus 444 ~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~ 523 (645)
.+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|++++.+..+++|+.|+|++|.|+++ +. +..+++|+
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~---~~-l~~l~~L~ 181 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQ 181 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc---hh-hcCCCccC
Confidence 9999999999999999999884 6889999999999999999998899999999999999999985 33 88999999
Q ss_pred EEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 524 ALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 524 ~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
.|+|++|.|++ ++. +..+++|+.|+..
T Consensus 182 ~L~L~~N~i~~-l~~-------l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 182 NLYLSKNHISD-LRA-------LAGLKNLDVLELF 208 (291)
T ss_dssp EEECCSSCCCB-CGG-------GTTCTTCSEEEEE
T ss_pred EEECCCCcCCC-Chh-------hccCCCCCEEECc
Confidence 99999999987 432 6778999988863
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=8.3e-20 Score=189.86 Aligned_cols=222 Identities=18% Similarity=0.223 Sum_probs=178.1
Q ss_pred hhhhcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEE
Q 006427 354 RSTAHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTL 432 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~L 432 (645)
.....+++|+.|+|++|.+...... ..-.++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.. ++|++|
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~L~~L 104 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETL 104 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC---TTCCEE
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC---CCcCEE
Confidence 3444567999999999999876532 223389999999999999877799999999999999999987643 789999
Q ss_pred ecCCCCCCCCcCCCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEccCCCCCCc--ccc-cCCCCCCEEECcCCCCCC
Q 006427 433 NLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYLAGNKISDI--EGL-HRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 433 dLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~Ls~N~Ls~l--~~l-~~L~~L~~LdLS~N~Ls~ 508 (645)
+|++|.|++++. ..+++|++|+|++|.|+.++. .+..+++|++|+|++|.|+++ ..+ ..+++|++|+|++|.|++
T Consensus 105 ~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 105 HAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999999998753 347889999999999998765 588899999999999999986 334 478999999999999998
Q ss_pred ccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccccc
Q 006427 509 TKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRK 588 (645)
Q Consensus 509 ~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~ 588 (645)
+.. ...+++|+.|+|++|.+++ +|.. +..+++|+.|+. ..|.+.. +|..+ .. ...++.+
T Consensus 184 ~~~----~~~l~~L~~L~Ls~N~l~~-l~~~------~~~l~~L~~L~L---~~N~l~~-l~~~~-----~~-l~~L~~L 242 (317)
T 3o53_A 184 VKG----QVVFAKLKTLDLSSNKLAF-MGPE------FQSAAGVTWISL---RNNKLVL-IEKAL-----RF-SQNLEHF 242 (317)
T ss_dssp EEC----CCCCTTCCEEECCSSCCCE-ECGG------GGGGTTCSEEEC---TTSCCCE-ECTTC-----CC-CTTCCEE
T ss_pred ccc----ccccccCCEEECCCCcCCc-chhh------hcccCcccEEEC---cCCcccc-hhhHh-----hc-CCCCCEE
Confidence 532 3458999999999999997 6655 677899999987 4555553 34322 12 3577888
Q ss_pred cccccCCc-cCcc
Q 006427 589 AVKRTGRS-GSLP 600 (645)
Q Consensus 589 ~l~~n~lS-G~iP 600 (645)
.++.|.+. +.+|
T Consensus 243 ~l~~N~~~~~~~~ 255 (317)
T 3o53_A 243 DLRGNGFHCGTLR 255 (317)
T ss_dssp ECTTCCCBHHHHH
T ss_pred EccCCCccCcCHH
Confidence 99999988 5444
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=7.1e-19 Score=174.88 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=157.8
Q ss_pred CCCEEecCCccccccchhh-ccCCCccEEEecCCC-CCcCC--CCCCCCCCCEEEccC-CcCCCCCCCCCC--CCCCEEe
Q 006427 361 RRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIG-LKAIP--TISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLN 433 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~-Lt~IP--sL~~L~~L~~LdLs~-N~Lt~ip~~~~~--~sL~~Ld 433 (645)
+|+.|+|++|.+..+..-. .-.++|+.|+|++|. ++.++ .|..+++|+.|+|++ |.|+.+++..|. ++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 7899999999998765522 223889999999997 99887 588999999999998 999999887654 7999999
Q ss_pred cCCCCCCCCcCCCCCCCCc---EEEccCC-ccccccCc-CcCCCCCc-EEEccCCCCCCcc-cccCCCCCCEEECcCCC-
Q 006427 434 LSRNKINTIEGLREMTRLR---VLDLSYN-RIFRIGHG-LSNCTLIK-ELYLAGNKISDIE-GLHRLLKLTVLDMSFNK- 505 (645)
Q Consensus 434 Ls~N~Ls~lp~L~~L~sL~---~LdLS~N-~Ls~LP~~-l~~L~sL~-~L~Ls~N~Ls~l~-~l~~L~~L~~LdLS~N~- 505 (645)
|++|.|++++.+..+++|+ +|+|++| .++.+|.. |..+++|+ .|+|++|.|+.++ ......+|+.|+|++|+
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY 191 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTT
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCC
Confidence 9999999998888888888 9999999 99998876 88999999 9999999999773 23333789999999995
Q ss_pred CCCccchhHhhhcC-CCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 506 ITTTKALGQLVANY-QSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 506 Ls~~~~LP~~l~~L-~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
|+.+ -+..+..+ ++|+.|+|++|+|++ +|.. .+++|+.|+..
T Consensus 192 l~~i--~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--------~~~~L~~L~l~ 234 (239)
T 2xwt_C 192 LTVI--DKDAFGGVYSGPSLLDVSQTSVTA-LPSK--------GLEHLKELIAR 234 (239)
T ss_dssp CCEE--CTTTTTTCSBCCSEEECTTCCCCC-CCCT--------TCTTCSEEECT
T ss_pred cccC--CHHHhhccccCCcEEECCCCcccc-CChh--------HhccCceeecc
Confidence 9875 24668888 999999999999986 5543 47788888764
No 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=2.2e-19 Score=182.94 Aligned_cols=198 Identities=20% Similarity=0.216 Sum_probs=159.1
Q ss_pred cccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCC
Q 006427 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N 437 (645)
++..+..++|+.+.+.....+..+ ++|+.|+|++|+|+.++.+..+++|+.|+|++|.|+.+++....++|+.|+|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHH-TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCcccccchhhc-CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 345566778888888776643333 7899999999999999988999999999999999998887333489999999999
Q ss_pred CCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhh
Q 006427 438 KINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517 (645)
Q Consensus 438 ~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~ 517 (645)
.|++++.+.. ++|++|+|++|.|+.++ .+..+++|+.|+|++|+|++++.+..+++|+.|+|++|.|+++ ..+.
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~----~~l~ 169 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT----GGLT 169 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC----TTST
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch----HHhc
Confidence 9999887666 99999999999999886 5889999999999999999998899999999999999999985 4578
Q ss_pred cCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhh
Q 006427 518 NYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRA 565 (645)
Q Consensus 518 ~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~ 565 (645)
.+++|+.|+|++|++.+. |..... .+..++.|+.+|...+.+..+
T Consensus 170 ~l~~L~~L~l~~N~~~~~-~~~~~~--~l~~~~~l~~l~~~~i~~~~i 214 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE-PVKYQP--ELYITNTVKDPDGRWISPYYI 214 (263)
T ss_dssp TCCCCCEEEEEEEEEECC-CEECCS--EEEEECCCBCTTSCBCCCSEE
T ss_pred cCCCCCEEeCCCCcccCC-cccccc--ceEECCeeecCCCCCcCCCEe
Confidence 899999999999999874 332100 011235566777766655443
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.4e-18 Score=195.51 Aligned_cols=243 Identities=20% Similarity=0.198 Sum_probs=123.1
Q ss_pred CCCChhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCC
Q 006427 349 GKSPARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 349 ~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
.+.++..+.++.+|+.|+|++|.+.....-. .-.++|++|+|++|.|+.+| .|..+++|++|+|++|.++.+++..+
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 117 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHc
Confidence 3344444555555555555555554432211 11145555555555555554 25555555555555555555544433
Q ss_pred C--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc---CcCCCCCcEEEccCCCCCC------------
Q 006427 426 P--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG---LSNCTLIKELYLAGNKISD------------ 486 (645)
Q Consensus 426 ~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~---l~~L~sL~~L~Ls~N~Ls~------------ 486 (645)
. ++|++|+|++|.+++++ .+..+++|++|+|++|.++.++.. +..+++|+.|+|++|.+++
T Consensus 118 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 2 45555555555555431 244555555555555555543322 1233445555555544443
Q ss_pred ---------------------------------------c--ccccCCC--CCCEEECcCCCCCCccchhHhhhcCCCCc
Q 006427 487 ---------------------------------------I--EGLHRLL--KLTVLDMSFNKITTTKALGQLVANYQSLL 523 (645)
Q Consensus 487 ---------------------------------------l--~~l~~L~--~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~ 523 (645)
+ ..+..+. +|+.|+|++|.++++ .|..++.+++|+
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~ 275 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV--GNDSFAWLPQLE 275 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE--CTTTTTTCTTCC
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc--CcccccCccccc
Confidence 2 1233332 367777777776664 345566777777
Q ss_pred EEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhH-H---HHHHHhcCCCCccccccccccCCccCc
Q 006427 524 ALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTD-S---IAKAVLGNSSQSSQRKAVKRTGRSGSL 599 (645)
Q Consensus 524 ~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~-~---i~~~~l~~~~~sl~~~~l~~n~lSG~i 599 (645)
+|+|++|.+.+..|.. +..+++|++|+... +...+.++. . +....+.. ...++.+.++.|.+.+..
T Consensus 276 ~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~~---~~~~~~~~~~~lp~i~~~~~~~-l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHS------LHGLFNVRYLNLKR---SFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp EEECCSCCBSEECTTT------TTTCTTCCEEECTT---CBCCC------CCEECTTTTTT-CTTCCEEECCSCCBCCCC
T ss_pred EeeCCCCccCccChhh------hcCCCCccEEeccc---hhhhcccccccccccChhhccc-CCCCCEEECCCCccCCCC
Confidence 7777777776655544 56667777776532 111111110 0 00011112 256778888999998866
Q ss_pred cCCC
Q 006427 600 PSSN 603 (645)
Q Consensus 600 Pss~ 603 (645)
|...
T Consensus 346 ~~~~ 349 (680)
T 1ziw_A 346 SNMF 349 (680)
T ss_dssp TTTT
T ss_pred hhHh
Confidence 6544
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=3.6e-19 Score=184.61 Aligned_cols=214 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCEEecCCccccccchhhc---------cCCCccEEEecCCCCC-cCC-CC--CCCCCCCEEEccCCcCCCCCCCCC---
Q 006427 362 RSEINLSEEILHANSVIRS---------LNSSSAVAHIAGIGLK-AIP-TI--SHFSSLRSVNLSNNFIVHIPTGSM--- 425 (645)
Q Consensus 362 L~~LdLS~n~l~~~~~l~~---------L~~~L~~L~Ls~N~Lt-~IP-sL--~~L~~L~~LdLs~N~Lt~ip~~~~--- 425 (645)
|+.|+|++|.+........ -.++|++|+|++|.|+ .+| .+ ..+++|+.|+|++|.|++++ ..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHH
Confidence 5566666666643221111 1356777777777776 455 33 67777777777777777663 211
Q ss_pred ----CCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCcccc---ccCcC--cCCCCCcEEEccCCCCCCcc-----c
Q 006427 426 ----PKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFR---IGHGL--SNCTLIKELYLAGNKISDIE-----G 489 (645)
Q Consensus 426 ----~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~---LP~~l--~~L~sL~~L~Ls~N~Ls~l~-----~ 489 (645)
.++|++|+|++|.|++++ .+..+++|++|+|++|.+.. ++..+ ..+++|++|+|++|.|++++ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 156777777777777664 36777777777777777652 23333 66777777777777777541 1
Q ss_pred ccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhh
Q 006427 490 LHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELL 569 (645)
Q Consensus 490 l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i 569 (645)
+..+++|++|+|++|.|++.... ..+..+++|++|+|++|.|+ .+|.. +. ++|++||. +.|++.+.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~-~ip~~------~~--~~L~~L~L---s~N~l~~~- 289 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSFTGLK-QVPKG------LP--AKLSVLDL---SYNRLDRN- 289 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTTSCCS-SCCSS------CC--SEEEEEEC---CSSCCCSC-
T ss_pred HhcCCCCCEEECCCCcCCcccch-hhhhhcCCCCEEECCCCccC-hhhhh------cc--CCceEEEC---CCCCCCCC-
Confidence 34567777777777777764211 23445677777777777776 46654 22 56666665 45555554
Q ss_pred hHHHHHHHhcCCCCccccccccccCCcc
Q 006427 570 TDSIAKAVLGNSSQSSQRKAVKRTGRSG 597 (645)
Q Consensus 570 ~~~i~~~~l~~~~~sl~~~~l~~n~lSG 597 (645)
|. +. . ...++.+.+++|.+++
T Consensus 290 p~-~~-----~-l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 PS-PD-----E-LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC-TT-----T-SCEEEEEECTTCTTTC
T ss_pred hh-Hh-----h-CCCCCEEeccCCCCCC
Confidence 32 21 1 2456666777777665
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=3.1e-18 Score=187.92 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=112.3
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006427 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
.+|+.|+|++|.+..+.. +.++|++|+|++|.|+.+|.++.+++|++|++++|.+++++.. ..+|++|+|++|.+
T Consensus 111 ~~L~~L~l~~n~l~~l~~---~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD---LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQL 185 (454)
T ss_dssp TTCCEEECCSSCCSCCCS---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC
T ss_pred CCCcEEECCCCccCcccC---CCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcC
Confidence 577788888887765432 2367788888888888888788888888888888888776543 24788888888888
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcC
Q 006427 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANY 519 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L 519 (645)
++++.+..+++|++|++++|.++.+|... ++|++|++++|.++.++.+..+++|++|+|++|++++++. .+
T Consensus 186 ~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~ 256 (454)
T 1jl5_A 186 EELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LP 256 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CC
T ss_pred CcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cc
Confidence 87777777777877777777777666432 4677777777777766666677777777777777766322 12
Q ss_pred CCCcEEEccCCCCCc
Q 006427 520 QSLLALNLLGNPIQS 534 (645)
Q Consensus 520 ~sL~~LdLs~N~L~g 534 (645)
++|+.|++++|.+.+
T Consensus 257 ~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD 271 (454)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred cccCEEECCCCcccc
Confidence 455555555555554
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.3e-18 Score=196.07 Aligned_cols=174 Identities=28% Similarity=0.306 Sum_probs=156.0
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+.+|.+|+.|+|++|.+..+..+..+ ++|+.|+|++|.|+.++.+..|++|+.|+|++|.|+.++....+++|+.|+|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l-~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYL-PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGC-TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred chhcCCCCCEEECcCCCCCCChHHccC-CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 467889999999999999887654433 7999999999999998889999999999999999999875555589999999
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
++|.|+.++.+..|++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+++..+..+++|+.|+|++|.|+++ +
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~- 191 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---R- 191 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---G-
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---h-
Confidence 999999998899999999999999999988 57889999999999999999986699999999999999999985 3
Q ss_pred hhhcCCCCcEEEccCCCCCc
Q 006427 515 LVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g 534 (645)
.+..+++|+.|+|++|++.+
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGTTCTTCSEEECCSEEEEC
T ss_pred HHccCCCCCEEEccCCcCcC
Confidence 47899999999999999976
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=2.5e-18 Score=192.51 Aligned_cols=193 Identities=18% Similarity=0.180 Sum_probs=114.6
Q ss_pred hhcccCCCEEecCCccccccc---hhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCC-CCCC--CC
Q 006427 356 TAHLTRRSEINLSEEILHANS---VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPT-GSMP--KG 428 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~---~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~-~~~~--~s 428 (645)
+..+++|+.|+|++|.+.... ......++|+.|+|++|.++.+| .+..+++|+.|+|++|.+..+++ ..+. ++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 345566666666666655442 12222256666666666666665 46666666666666666665544 2222 56
Q ss_pred CCEEecCCCCCCCC-c-CCCCCCCCcEEEccCCcccc--ccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECc
Q 006427 429 LHTLNLSRNKINTI-E-GLREMTRLRVLDLSYNRIFR--IGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMS 502 (645)
Q Consensus 429 L~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N~Ls~--LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS 502 (645)
|++|+|++|.+++. + .+..+++|++|+|++|.++. +|..+..+++|+.|+|++|.|+++ ..+..+++|+.|+|+
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 66666666666653 2 35666666666666666663 455566666666666666666654 235666666666666
Q ss_pred CCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC-CCceecc
Q 006427 503 FNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP-KLVYLNK 557 (645)
Q Consensus 503 ~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~-~L~~Ld~ 557 (645)
+|++++. .|..+..+++|+.|+|++|+|+. +|.. +..++ +|++|+.
T Consensus 506 ~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~-~p~~------~~~l~~~L~~l~l 552 (606)
T 3vq2_A 506 HNNLLFL--DSSHYNQLYSLSTLDCSFNRIET-SKGI------LQHFPKSLAFFNL 552 (606)
T ss_dssp SSCCSCE--EGGGTTTCTTCCEEECTTSCCCC-EESC------GGGSCTTCCEEEC
T ss_pred CCcCCCc--CHHHccCCCcCCEEECCCCcCcc-cCHh------HhhhcccCcEEEc
Confidence 6666664 45566666666666666666663 5544 34444 3665554
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=195.09 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=137.0
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCC--CCC--CCCCCCEEecCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIP--TGS--MPKGLHTLNLSR 436 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip--~~~--~~~sL~~LdLs~ 436 (645)
+|+.|+|++|.+..++. ...++|+.|++++|.+........+++|+.|+|++|.++.+. +.. ..++|++|+|++
T Consensus 305 ~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred CccEEeeccCcccccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 45555555554442222 122455555555555543333355666667777766666442 111 125677777777
Q ss_pred CCCCCCc-CCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccc
Q 006427 437 NKINTIE-GLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKA 511 (645)
Q Consensus 437 N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~ 511 (645)
|.+.+++ .+..+++|+.|+|++|.++.++. .+..+++|++|+|++|.+.+. ..+..+++|++|+|++|.+++. .
T Consensus 383 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~ 461 (570)
T 2z63_A 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-F 461 (570)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-E
T ss_pred CccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-c
Confidence 7766653 36677777777777777775433 366777777777777777664 3466777777777777777621 1
Q ss_pred hhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcccccccc
Q 006427 512 LGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVK 591 (645)
Q Consensus 512 LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~~~l~ 591 (645)
+|..+..+++|+.|+|++|.+++..|.. +..+++|++|+. ..|.+.+..+..+.. -..++.+.++
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l---~~n~l~~~~~~~~~~------l~~L~~L~l~ 526 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTA------FNSLSSLQVLNM---ASNQLKSVPDGIFDR------LTSLQKIWLH 526 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEEC---CSSCCSCCCTTTTTT------CTTCCEEECC
T ss_pred chhhhhcccCCCEEECCCCccccCChhh------hhcccCCCEEeC---CCCcCCCCCHHHhhc------ccCCcEEEec
Confidence 5666777788888888888887755655 566777777775 445555554433321 2456677788
Q ss_pred ccCCccCccC
Q 006427 592 RTGRSGSLPS 601 (645)
Q Consensus 592 ~n~lSG~iPs 601 (645)
.|.+.|..|.
T Consensus 527 ~N~~~~~~~~ 536 (570)
T 2z63_A 527 TNPWDCSCPR 536 (570)
T ss_dssp SSCBCCCTTT
T ss_pred CCcccCCCcc
Confidence 8888877664
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.2e-17 Score=188.71 Aligned_cols=193 Identities=20% Similarity=0.230 Sum_probs=118.9
Q ss_pred cccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCC
Q 006427 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N 437 (645)
.+.+|+.|+|++|.+..++. ..++|+.|+|++|+|+.+|.. +++|+.|+|++|.|+.++. .+.+|+.|+|++|
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N 171 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPA--LPSELCKLWAYNN 171 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCC
Confidence 34455555555554444322 234455555555555555531 3555566666665555442 1234444444444
Q ss_pred CCCCCcCCCCCCCCcEEEccCCccccccCcCc-----------------CCCCCcEEEccCCCCCCcccccCCCCCCEEE
Q 006427 438 KINTIEGLREMTRLRVLDLSYNRIFRIGHGLS-----------------NCTLIKELYLAGNKISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 438 ~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~-----------------~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~Ld 500 (645)
.|+.++ ..+++|+.|+|++|.|+.+|..+. .+++|+.|+|++|.|++++ ..+++|+.|+
T Consensus 172 ~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~ 247 (622)
T 3g06_A 172 QLTSLP--MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--VLPSELKELM 247 (622)
T ss_dssp CCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEE
T ss_pred CCCCCc--ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC--CCCCcCcEEE
Confidence 444443 233566666666666665543221 1256777777777777765 4567888888
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHH
Q 006427 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAV 577 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~ 577 (645)
|++|.|+. +|. .+++|+.|+|++|.|+ .+|.. +..+++|+.|+. ..|.+.+.++..+....
T Consensus 248 Ls~N~L~~---lp~---~~~~L~~L~Ls~N~L~-~lp~~------l~~l~~L~~L~L---~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 248 VSGNRLTS---LPM---LPSGLLSLSVYRNQLT-RLPES------LIHLSSETTVNL---EGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCSC---CCC---CCTTCCEEECCSSCCC-SCCGG------GGGSCTTCEEEC---CSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCc---CCc---ccccCcEEeCCCCCCC-cCCHH------HhhccccCEEEe---cCCCCCCcCHHHHHhcc
Confidence 88888886 443 5688999999999998 57876 777888888886 67778888888887664
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.1e-18 Score=167.58 Aligned_cols=156 Identities=24% Similarity=0.393 Sum_probs=134.2
Q ss_pred cEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCC--cCCCCCCCCcEEEccCCc
Q 006427 386 AVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNR 460 (645)
Q Consensus 386 ~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~l--p~L~~L~sL~~LdLS~N~ 460 (645)
+.+++++++|+.+|. +. ++|+.|+|++|.|+.+++..|. ++|+.|+|++|.|+.+ ..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 478889999999883 43 6899999999999998877665 7899999999999987 358999999999999999
Q ss_pred cccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 461 IFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 461 Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
|+.+|.. |..+++|++|+|++|.|+++ ..|..+++|++|+|++|.|+++ .+..+..+++|+.|+|++|++.+.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI--AKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE--CHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999876 68899999999999999987 4688999999999999999986 34678899999999999999998776
Q ss_pred hhHHHHHH
Q 006427 538 DDQLRKAV 545 (645)
Q Consensus 538 ~~~l~~~v 545 (645)
...+..++
T Consensus 170 l~~l~~~l 177 (220)
T 2v9t_B 170 LKWLADYL 177 (220)
T ss_dssp GHHHHHHH
T ss_pred cHHHHHHH
Confidence 65555443
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=3e-18 Score=191.25 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=98.0
Q ss_pred cCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCC
Q 006427 360 TRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~ 436 (645)
.+|+.|+|++|.+.....- ..-.++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++.. ..++|++|+|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 6899999999999876532 222378999999999999874 589999999999999999999877 568999999999
Q ss_pred CCCCCCc---CCCCCCCCcEEEccCCccccccCcCcCCCCC--cEEEccCCCC
Q 006427 437 NKINTIE---GLREMTRLRVLDLSYNRIFRIGHGLSNCTLI--KELYLAGNKI 484 (645)
Q Consensus 437 N~Ls~lp---~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL--~~L~Ls~N~L 484 (645)
|.|+.++ .|..+++|++|+|++|.|+.. .+..+++| ++|+|++|.+
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 9999863 588999999999999998742 23344444 6666666655
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=4.3e-18 Score=194.51 Aligned_cols=206 Identities=20% Similarity=0.174 Sum_probs=128.8
Q ss_pred cccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCC
Q 006427 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN 437 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N 437 (645)
.+++|+.|+|++|.+..++. ..++|++|+|++|.|+.+|. .+++|+.|+|++|.|+.++.. .++|++|+|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N 151 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDN 151 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCC
Confidence 34566666666666654433 33566666666666666665 456666666666666666543 256777777777
Q ss_pred CCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccc----c--------------CCCCCCEE
Q 006427 438 KINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL----H--------------RLLKLTVL 499 (645)
Q Consensus 438 ~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l----~--------------~L~~L~~L 499 (645)
.|++++. .+.+|+.|+|++|.|+.+| ..+++|+.|+|++|.|++++.. . .+++|+.|
T Consensus 152 ~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 152 QLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence 6666653 2456777777777777666 3457888888888888775321 1 12456666
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhc
Q 006427 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLG 579 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~ 579 (645)
+|++|.|++ +| ..+++|+.|+|++|.|+. +|. .+++|+.|+. ..|.+. .+|..+..
T Consensus 227 ~Ls~N~L~~---lp---~~l~~L~~L~Ls~N~L~~-lp~---------~~~~L~~L~L---s~N~L~-~lp~~l~~---- 282 (622)
T 3g06_A 227 IVSGNRLTS---LP---VLPSELKELMVSGNRLTS-LPM---------LPSGLLSLSV---YRNQLT-RLPESLIH---- 282 (622)
T ss_dssp ECCSSCCSC---CC---CCCTTCCEEECCSSCCSC-CCC---------CCTTCCEEEC---CSSCCC-SCCGGGGG----
T ss_pred EccCCccCc---CC---CCCCcCcEEECCCCCCCc-CCc---------ccccCcEEeC---CCCCCC-cCCHHHhh----
Confidence 666666665 33 345677777777777764 553 3567777775 445555 44544332
Q ss_pred CCCCccccccccccCCccCccC
Q 006427 580 NSSQSSQRKAVKRTGRSGSLPS 601 (645)
Q Consensus 580 ~~~~sl~~~~l~~n~lSG~iPs 601 (645)
...+..+.++.|.++|.+|.
T Consensus 283 --l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 283 --LSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --SCTTCEEECCSCCCCHHHHH
T ss_pred --ccccCEEEecCCCCCCcCHH
Confidence 25667788888888887665
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=8.9e-18 Score=185.50 Aligned_cols=149 Identities=22% Similarity=0.305 Sum_probs=69.2
Q ss_pred CCccEEEecCCCCCcCCC----CCCCCCCCEEEccCCcCCCCCCCCC-CCCCCEEecCCCCCCCCcCCCCCCCCcEEEcc
Q 006427 383 SSSAVAHIAGIGLKAIPT----ISHFSSLRSVNLSNNFIVHIPTGSM-PKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPs----L~~L~~L~~LdLs~N~Lt~ip~~~~-~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS 457 (645)
++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.+|.... .++|++|+|++|.|+.++... .++|++|+|+
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls 439 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVS 439 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECC
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEECC
Confidence 445555555555544431 4444555555555555554443221 144555555555544443211 1345555555
Q ss_pred CCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 458 YNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 458 ~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
+|+|+.++ ..+++|++|+|++|+|+.++....+++|++|+|++|+|+++ .|..+..+++|+.|+|++|++.|.+|
T Consensus 440 ~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 440 NNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCC--CTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCChhhhc---ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCc--CHHHHhcCcccCEEEecCCCccCCCc
Confidence 55544432 23444555555555555444344444555555555555543 23344455555555555555554443
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=1.4e-17 Score=189.15 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=133.9
Q ss_pred cCCCEEecCCccccccchhhc-cCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEec
Q 006427 360 TRRSEINLSEEILHANSVIRS-LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNL 434 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~-L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdL 434 (645)
.+++.|+|++|.+........ -.++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+++..|. ++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 456666777666665443211 1256667777766666553 355666677777777766666654443 66677777
Q ss_pred CCCCCCCCc--CCCCCCCCcEEEccCCcccccc-CcCcCCCCCcEEEccCCCCCCcc--c--ccCCCCCCEEECcCCCCC
Q 006427 435 SRNKINTIE--GLREMTRLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIE--G--LHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 435 s~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~Ls~l~--~--l~~L~~L~~LdLS~N~Ls 507 (645)
++|.|++++ .|..+++|++|+|++|.++.++ ..++.+++|++|+|++|.++++. . +..+++|+.|+|++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 777666653 3666666777777776666443 33666666777777776666651 1 234466667777776666
Q ss_pred CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCcccc
Q 006427 508 TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQR 587 (645)
Q Consensus 508 ~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~~~~sl~~ 587 (645)
++ .|..+..+.+|+.|++.+|.+.+..... +.. ....++|+.|+. ..+.+.+..+..+... ....++.
T Consensus 185 ~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~--~l~~~~L~~L~L---~~n~l~~~~~~~~~~l----~~~~L~~ 252 (680)
T 1ziw_A 185 EF--SPGCFHAIGRLFGLFLNNVQLGPSLTEK-LCL--ELANTSIRNLSL---SNSQLSTTSNTTFLGL----KWTNLTM 252 (680)
T ss_dssp CB--CTTGGGGSSEECEEECTTCCCHHHHHHH-HHH--HHTTSCCCEEEC---TTSCCCEECTTTTGGG----GGSCCCE
T ss_pred cc--ChhhhhhhhhhhhhhccccccChhhHHH-HHH--HhhhccccEEEc---cCCcccccChhHhhcc----CcCCCCE
Confidence 65 4455666666666666666654321110 000 012355666654 3444444444333321 1134777
Q ss_pred ccccccCCccCccCCC
Q 006427 588 KAVKRTGRSGSLPSSN 603 (645)
Q Consensus 588 ~~l~~n~lSG~iPss~ 603 (645)
+.++.|.+.+..|...
T Consensus 253 L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSF 268 (680)
T ss_dssp EECTTSCCCEECTTTT
T ss_pred EECCCCCcCccCcccc
Confidence 8888888887766554
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=6.6e-18 Score=164.43 Aligned_cols=145 Identities=23% Similarity=0.359 Sum_probs=69.8
Q ss_pred EEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEccCCccc
Q 006427 387 VAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF 462 (645)
Q Consensus 387 ~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls 462 (645)
.+++++++++.+|. ...++|+.|+|++|.|+.+++..+. ++|++|+|++|.|+.++. |..+++|++|+|++|.|+
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34444445544441 1123455555555555544443332 445555555555554432 444555555555555555
Q ss_pred cccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 463 RIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 463 ~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
.++.. +..+++|++|+|++|.|++++ .+..+++|++|+|++|.|+++ .+..+..+++|+.|+|++|++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--PDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee--CHHHhccCCCccEEEecCCCeec
Confidence 44433 445555555555555555441 244455555555555555543 22334455555555555555543
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=190.68 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=101.9
Q ss_pred cCCCEEecCCccccccchh-hccCCCccEEEecCCCCCcC-C-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCC
Q 006427 360 TRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt~I-P-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~ 436 (645)
.+|+.|+|++|.+.....- ..-.++|++|+|++|.|+.+ | .|..+++|++|+|++|.|+.+|.. ..++|++|+|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 7899999999998876532 22237899999999999987 4 689999999999999999988877 558999999999
Q ss_pred CCCCCC--c-CCCCCCCCcEEEccCCccccccCcCcCCCCC--cEEEccCCCC
Q 006427 437 NKINTI--E-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLI--KELYLAGNKI 484 (645)
Q Consensus 437 N~Ls~l--p-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL--~~L~Ls~N~L 484 (645)
|.|+++ | .++.+++|++|+|++|.|+.. .+..+++| +.|+|++|.+
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTT
T ss_pred CccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccc
Confidence 999874 3 588999999999999998862 46677777 9999999988
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.2e-18 Score=196.19 Aligned_cols=184 Identities=27% Similarity=0.323 Sum_probs=159.9
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN 440 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls 440 (645)
.+..+.|..+.+.....+..+ .+|+.|+|++|.|..++.+..|++|+.|+|++|.|+.+++...+++|+.|+|++|.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHHHHhccCCCcccccchhcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCC
Confidence 344456666666655444433 6899999999999999999999999999999999999887444489999999999999
Q ss_pred CCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCC
Q 006427 441 TIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQ 520 (645)
Q Consensus 441 ~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~ 520 (645)
.++.+..+++|+.|+|++|.|+.++ .+..|++|+.|+|++|.|+++..+..+++|+.|+|++|.|+++ .| +..++
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~--l~~l~ 175 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP--LAGLT 175 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG--GTTCT
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh--hccCC
Confidence 9999999999999999999999885 6889999999999999999998899999999999999999985 33 89999
Q ss_pred CCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006427 521 SLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 521 sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
+|+.|+|++|.|.+ ++ . +..|++|+.|++.
T Consensus 176 ~L~~L~Ls~N~i~~-l~-~------l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 176 KLQNLYLSKNHISD-LR-A------LAGLKNLDVLELF 205 (605)
T ss_dssp TCCEEECCSSCCCB-CG-G------GTTCTTCSEEECC
T ss_pred CCCEEECcCCCCCC-Ch-H------HccCCCCCEEEcc
Confidence 99999999999987 43 2 6778999988864
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=165.60 Aligned_cols=156 Identities=26% Similarity=0.334 Sum_probs=132.1
Q ss_pred cEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCC-CCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCC
Q 006427 386 AVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPT-GSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYN 459 (645)
Q Consensus 386 ~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~-~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N 459 (645)
+.+++++|.|+.+|. + ...++.|+|++|.|+.+++ ..|. ++|++|+|++|.|+.++ .|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 478888999988883 4 3457899999999998854 3343 78999999999999875 4889999999999999
Q ss_pred ccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCC
Q 006427 460 RIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNI 536 (645)
Q Consensus 460 ~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~i 536 (645)
.|+.++.. |..+++|++|+|++|.|+++ ..|..+++|++|+|++|+|+++ .|..+..+++|+.|+|++|++.|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--APGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--CTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--CHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99988765 88999999999999999987 4588999999999999999996 5688999999999999999999988
Q ss_pred ChhHHHHHH
Q 006427 537 SDDQLRKAV 545 (645)
Q Consensus 537 P~~~l~~~v 545 (645)
+...+..++
T Consensus 170 ~l~~l~~~~ 178 (220)
T 2v70_A 170 YLAWLGEWL 178 (220)
T ss_dssp GGHHHHHHH
T ss_pred chHHHHHHH
Confidence 766555544
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=177.61 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=94.2
Q ss_pred ccCCCEEecCCccccccchhh---ccCCCccEEEecCCCCCcC-C-----CCCCCCCCCEEEccCCcCCCCCCCCCC--C
Q 006427 359 LTRRSEINLSEEILHANSVIR---SLNSSSAVAHIAGIGLKAI-P-----TISHFSSLRSVNLSNNFIVHIPTGSMP--K 427 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l~---~L~~~L~~L~Ls~N~Lt~I-P-----sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~ 427 (645)
+.+|+.|+|++|.+.+..... .-.++|+.|+|++|.|+.. + .+..+++|+.|+|++|.|+.+++..+. +
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 445666666666655433322 2235566666666666532 1 133566666666666666665554432 5
Q ss_pred CCCEEecCCCCCCC---Cc---CCCCCCCCcEEEccCCccccccCc----CcCCCCCcEEEccCCCCCCc--ccccCC--
Q 006427 428 GLHTLNLSRNKINT---IE---GLREMTRLRVLDLSYNRIFRIGHG----LSNCTLIKELYLAGNKISDI--EGLHRL-- 493 (645)
Q Consensus 428 sL~~LdLs~N~Ls~---lp---~L~~L~sL~~LdLS~N~Ls~LP~~----l~~L~sL~~L~Ls~N~Ls~l--~~l~~L-- 493 (645)
+|++|+|++|++.+ ++ .+..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|++. ..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666666543 21 134556666666666666544432 34556666666666666654 223333
Q ss_pred -CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 494 -LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 494 -~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
++|++|+|++|+|+. +|..+ .++|+.|+|++|.|++
T Consensus 250 ~~~L~~L~Ls~N~l~~---lp~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ---VPKGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp CTTCCCEECCSSCCCS---CCSCC--CSCCSCEECCSCCCCS
T ss_pred cCcCCEEECCCCCCCc---hhhhh--cCCCCEEECCCCcCCC
Confidence 466666666666664 33333 2566666666666665
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.5e-17 Score=188.31 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=143.7
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006427 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
++|+.|+|++|.+..++ ...++|+.|+|++|.|+.+|.+.. +|+.|+|++|.|+.++. ..++|+.|+|++|.|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQL 152 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCcc
Confidence 68999999999999665 456899999999999999998544 99999999999999887 568999999999999
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCC-------CEEECcCCCCCCccch
Q 006427 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKL-------TVLDMSFNKITTTKAL 512 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L-------~~LdLS~N~Ls~~~~L 512 (645)
++++. .+++|++|+|++|.|+.+|. |. ++|+.|+|++|.|+.++.+.. +| +.|+|++|.|+. +
T Consensus 153 ~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~---l 222 (571)
T 3cvr_A 153 TMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITH---I 222 (571)
T ss_dssp SCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCC---C
T ss_pred CcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCccee---c
Confidence 99887 68899999999999999998 65 899999999999998865443 77 999999999997 6
Q ss_pred hHhhhcCCCCcEEEccCCCCCcCCChh
Q 006427 513 GQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 513 P~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
|..+..+++|+.|+|++|+|++.+|..
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 777888999999999999999977664
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=204.37 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=85.4
Q ss_pred hhhhhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--C
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--K 427 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~ 427 (645)
+..+..+++|+.|+|++|.+....... .-.++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++..+. +
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 334445555555555555554332211 11145555555555555442 355555555555555555555444332 4
Q ss_pred CCCEEecCCCCCCCCcC------------------------------------------CCCCCCCcEEEccCCcccccc
Q 006427 428 GLHTLNLSRNKINTIEG------------------------------------------LREMTRLRVLDLSYNRIFRIG 465 (645)
Q Consensus 428 sL~~LdLs~N~Ls~lp~------------------------------------------L~~L~sL~~LdLS~N~Ls~LP 465 (645)
+|++|+|++|.|+.++. +..+++|++|+|++|.|+.++
T Consensus 363 ~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 55555555555443321 123444444444444444332
Q ss_pred Cc--CcCCCCCcEEEccCCCCCCc-------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 466 HG--LSNCTLIKELYLAGNKISDI-------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 466 ~~--l~~L~sL~~L~Ls~N~Ls~l-------~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
.. +..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+++ .|..+..+++|+.|+|++|.|++
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL--PPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC--CTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc--ChhHccchhhhheeECCCCCCCc
Confidence 21 33344444455555444321 1244455555555555555554 33445556666666666666655
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.3e-17 Score=162.37 Aligned_cols=166 Identities=19% Similarity=0.302 Sum_probs=141.3
Q ss_pred CEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCC
Q 006427 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNK 438 (645)
Q Consensus 363 ~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~ 438 (645)
+.++++++.+..++ ..+.++|+.|+|++|+|+.++ .+..+++|++|+|++|.|+.+++..+. ++|++|+|++|.
T Consensus 10 ~~v~c~~~~l~~~p--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVP--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCC--SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCC--CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777777776543 344578999999999999887 378999999999999999998887654 899999999999
Q ss_pred CCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCccchh
Q 006427 439 INTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 439 Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
|+.++. +..+++|++|+|++|.|+.++.. +..+++|++|+|++|.|++++ .+..+++|+.|+|++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 998854 78899999999999999988766 788999999999999999873 37889999999999998764
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChh
Q 006427 514 QLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
.+++|+.|++..|.++|.+|..
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeecc
Confidence 4568899999999999999876
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=193.17 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=135.9
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcC---C-CCCCCCCCCEEEccCCcCCCCCCCC-CCCCCCE
Q 006427 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHT 431 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~I---P-sL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~ 431 (645)
..+++|+.|++++|.+...... ...++|+.|+|++|.++.+ + .+..+++|+.|+|++|.++.+++.. ..++|+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 3567788888887776654333 3336788888888887755 3 4667778888888888877766541 1267888
Q ss_pred EecCCCCCCCCc---CCCCCCCCcEEEccCCcccc-ccCcCcCCCCCcEEEccCCCCCC--c-ccccCCCCCCEEECcCC
Q 006427 432 LNLSRNKINTIE---GLREMTRLRVLDLSYNRIFR-IGHGLSNCTLIKELYLAGNKISD--I-EGLHRLLKLTVLDMSFN 504 (645)
Q Consensus 432 LdLs~N~Ls~lp---~L~~L~sL~~LdLS~N~Ls~-LP~~l~~L~sL~~L~Ls~N~Ls~--l-~~l~~L~~L~~LdLS~N 504 (645)
|+|++|.+.++. .+..+++|++|+|++|.+.. +|..+..+++|++|+|++|.+++ + ..+..+++|+.|+|++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 888888777652 36777888888888888774 44457778888888888887762 2 45777788888888888
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 505 KITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
+++++ .|..+..+++|+.|+|++|.+++..+.. +..+++|+.|+.
T Consensus 481 ~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l 525 (570)
T 2z63_A 481 QLEQL--SPTAFNSLSSLQVLNMASNQLKSVPDGI------FDRLTSLQKIWL 525 (570)
T ss_dssp CCCEE--CTTTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred ccccC--ChhhhhcccCCCEEeCCCCcCCCCCHHH------hhcccCCcEEEe
Confidence 88775 4667777888888888888887754443 566777777765
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=3.4e-18 Score=177.29 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=154.3
Q ss_pred cccCCCEEecCCccccccchhh---ccCCCccEEEecCCCCCcCC-CCCCC-----CCCCEEEccCCcCCCCCCCCCC--
Q 006427 358 HLTRRSEINLSEEILHANSVIR---SLNSSSAVAHIAGIGLKAIP-TISHF-----SSLRSVNLSNNFIVHIPTGSMP-- 426 (645)
Q Consensus 358 ~L~~L~~LdLS~n~l~~~~~l~---~L~~~L~~L~Ls~N~Lt~IP-sL~~L-----~~L~~LdLs~N~Lt~ip~~~~~-- 426 (645)
++.+|+.|+|++|.+.+..+.. ...++|++|+|++|.|+.+| .+..+ ++|++|+|++|.|+.+++..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6899999999999988543332 33488999999999999887 34444 8999999999999998876664
Q ss_pred CCCCEEecCCCCCCCC----cCC--CCCCCCcEEEccCCcccccc---Cc-CcCCCCCcEEEccCCCCCCc---ccccCC
Q 006427 427 KGLHTLNLSRNKINTI----EGL--REMTRLRVLDLSYNRIFRIG---HG-LSNCTLIKELYLAGNKISDI---EGLHRL 493 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~l----p~L--~~L~sL~~LdLS~N~Ls~LP---~~-l~~L~sL~~L~Ls~N~Ls~l---~~l~~L 493 (645)
++|++|+|++|++.+. +.+ ..+++|++|+|++|.|+.++ .. +..+++|++|+|++|.|++. ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8999999999998752 233 88999999999999999443 33 45789999999999999885 446678
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhh
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAR 566 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~ 566 (645)
++|++|+|++|.|+. +|..+. ++|+.|+|++|.|++. |. +..+++|++|+. ..|.+.
T Consensus 253 ~~L~~L~Ls~N~l~~---ip~~~~--~~L~~L~Ls~N~l~~~-p~-------~~~l~~L~~L~L---~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQ---VPKGLP--AKLSVLDLSYNRLDRN-PS-------PDELPQVGNLSL---KGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSS---CCSSCC--SEEEEEECCSSCCCSC-CC-------TTTSCEEEEEEC---TTCTTT
T ss_pred CCCCEEECCCCccCh---hhhhcc--CCceEEECCCCCCCCC-hh-------HhhCCCCCEEec---cCCCCC
Confidence 999999999999996 555554 8999999999999884 43 466888888875 444443
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.8e-18 Score=163.65 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=116.5
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCC--CcCCCCCCCCcEEEccCCc
Q 006427 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLDLSYNR 460 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~--lp~L~~L~sL~~LdLS~N~ 460 (645)
++|+.|+|++|.|+.+|.+..+++|+.|+|++|.++.++.....++|++|+|++|.|++ +..+..+++|++|+|++|.
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 45667777777777777777788888888888877766543444778888888888875 4568888999999999999
Q ss_pred ccc-ccCcCcCCCCCcEEEccCCC-CCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 461 IFR-IGHGLSNCTLIKELYLAGNK-ISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 461 Ls~-LP~~l~~L~sL~~L~Ls~N~-Ls~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
|+. .+..+..+++|++|+|++|. ++.++.+..+++|+.|+|++|.|+++ + .+..+++|+.|++++|+|.+
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~---~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC---T-TGGGCSSCCEEEECBC----
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh---H-HhccCCCCCEEEeeCcccCC
Confidence 984 55668888999999999997 88888888899999999999999884 3 57889999999999998864
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=176.58 Aligned_cols=172 Identities=25% Similarity=0.350 Sum_probs=146.5
Q ss_pred CEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCC-CCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCC
Q 006427 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TIS-HFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (645)
Q Consensus 363 ~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~-~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N 437 (645)
+.++++++.+..++ ..+...++.|+|++|+|+.++ .+. .+++|+.|+|++|.|+.+++..|. ++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP--~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVP--QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCC--SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccC--ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57889998888754 345677999999999999887 366 899999999999999999887665 89999999999
Q ss_pred CCCCCcC--CCCCCCCcEEEccCCcccccc-CcCcCCCCCcEEEccCCCCCCccc--c---cCCCCCCEEECcCCCCCCc
Q 006427 438 KINTIEG--LREMTRLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIEG--L---HRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 438 ~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~Ls~l~~--l---~~L~~L~~LdLS~N~Ls~~ 509 (645)
.|+.++. |..+++|++|+|++|.|+.++ ..|..+++|+.|+|++|.|+.++. + ..+++|+.|+|++|+|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9998854 889999999999999999875 459999999999999999999832 3 5799999999999999986
Q ss_pred cchhHhhhcCCC--CcEEEccCCCCCcCCCh
Q 006427 510 KALGQLVANYQS--LLALNLLGNPIQSNISD 538 (645)
Q Consensus 510 ~~LP~~l~~L~s--L~~LdLs~N~L~g~iP~ 538 (645)
+ +..+..++. |+.|+|.+|++.|.+..
T Consensus 179 ~--~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 179 P--LTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp C--HHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred C--HHHhhhccHhhcceEEecCCCccCCcCc
Confidence 3 366788887 48899999999987654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=176.81 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=75.6
Q ss_pred CCccEEEecCCCCCcC-C-CC--CCCCCCCEEEccCCcCCCCCCC------CCCCCCCEEecCCCCCCCCc--CCCCCCC
Q 006427 383 SSSAVAHIAGIGLKAI-P-TI--SHFSSLRSVNLSNNFIVHIPTG------SMPKGLHTLNLSRNKINTIE--GLREMTR 450 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~I-P-sL--~~L~~L~~LdLs~N~Lt~ip~~------~~~~sL~~LdLs~N~Ls~lp--~L~~L~s 450 (645)
++|+.|+|++|.++.. | .+ ..+++|+.|+|++|.|+...+. ...++|++|+|++|.|+.++ .+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3455555555555532 2 23 5555555555555555542110 11245555555555555442 2455555
Q ss_pred CcEEEccCCcccc---ccCc--CcCCCCCcEEEccCCCCCCccc-----ccCCCCCCEEECcCCCCCCccchhHhhhcC-
Q 006427 451 LRVLDLSYNRIFR---IGHG--LSNCTLIKELYLAGNKISDIEG-----LHRLLKLTVLDMSFNKITTTKALGQLVANY- 519 (645)
Q Consensus 451 L~~LdLS~N~Ls~---LP~~--l~~L~sL~~L~Ls~N~Ls~l~~-----l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L- 519 (645)
|++|+|++|.+.. ++.. +..+++|++|+|++|+|+.++. +..+++|++|+|++|.|++. .|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT--VNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC--CCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc--chhhHHhcc
Confidence 5555555555432 2222 2455555555555555554421 24455555555555555553 23333333
Q ss_pred --CCCcEEEccCCCCCcCCCh
Q 006427 520 --QSLLALNLLGNPIQSNISD 538 (645)
Q Consensus 520 --~sL~~LdLs~N~L~g~iP~ 538 (645)
++|+.|+|++|.|+ .+|.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCS
T ss_pred CcCcCCEEECCCCCCC-chhh
Confidence 45555555555555 2443
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=4.6e-17 Score=179.82 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=143.4
Q ss_pred hhcccCCCEEecCCccccccchhh-ccCCCccEEEecCCCCCc-CC----CCCCCCCCCEEEccCCcCCCCCC--C--CC
Q 006427 356 TAHLTRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLKA-IP----TISHFSSLRSVNLSNNFIVHIPT--G--SM 425 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt~-IP----sL~~L~~L~~LdLs~N~Lt~ip~--~--~~ 425 (645)
...+.+|+.|+|++|.+..++... ...++|+.|+|++|.++. +| .++.+++|+.|+|++|.|+.++. . ..
T Consensus 306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 344567888888888777554332 224778888888888874 22 36778888888888888877653 1 22
Q ss_pred CCCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCC
Q 006427 426 PKGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFN 504 (645)
Q Consensus 426 ~~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N 504 (645)
.++|++|+|++|+|+.+|. +..+++|++|+|++|.|+.+|..+. ++|++|+|++|+|+++. ..+++|++|+|++|
T Consensus 386 l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS--LFLPRLQELYISRN 461 (549)
T ss_dssp CTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc--ccCChhcEEECCCC
Confidence 3788888888888887764 7778888888888888887765542 57888888888887763 56788888888888
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhh
Q 006427 505 KITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~ 570 (645)
+|+. +|. ...+++|+.|+|++|.+++.+|.. +..+++|+.|+. ..|.+.+..+
T Consensus 462 ~l~~---ip~-~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~l---~~N~~~~~~~ 514 (549)
T 2z81_A 462 KLKT---LPD-ASLFPVLLVMKISRNQLKSVPDGI------FDRLTSLQKIWL---HTNPWDCSCP 514 (549)
T ss_dssp CCSS---CCC-GGGCTTCCEEECCSSCCCCCCTTG------GGGCTTCCEEEC---CSSCBCCCHH
T ss_pred ccCc---CCC-cccCccCCEEecCCCccCCcCHHH------HhcCcccCEEEe---cCCCccCCCc
Confidence 8886 444 467888888888888888866554 667888887775 4455544444
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=4.9e-17 Score=180.81 Aligned_cols=153 Identities=25% Similarity=0.265 Sum_probs=88.4
Q ss_pred ccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcE
Q 006427 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV 453 (645)
Q Consensus 380 ~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~ 453 (645)
.+++++++|+|++|.|+.+| +|..+++|++|+|++|.|+.+++++|. ++|++|+|++|+|+.++. |.++++|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 34455666666666666655 366666666666666666666655543 566666666666665532 566666666
Q ss_pred EEccCCccccccCc-CcCCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCccchhHhhhcCCC----CcEE
Q 006427 454 LDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQS----LLAL 525 (645)
Q Consensus 454 LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~s----L~~L 525 (645)
|+|++|+|+.++.. |+++++|++|+|++|.|+.+ ..+..+++|++|+|++|+|+++ .+..+..+.+ +..+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHHHTCTTCCCEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccchhhhhhhhhhh
Confidence 66666666665543 56666666666666666543 2355566666666666666654 2233333222 2245
Q ss_pred EccCCCCCc
Q 006427 526 NLLGNPIQS 534 (645)
Q Consensus 526 dLs~N~L~g 534 (645)
+++.|.+..
T Consensus 207 ~ls~n~l~~ 215 (635)
T 4g8a_A 207 DLSLNPMNF 215 (635)
T ss_dssp ECTTCCCCE
T ss_pred hcccCcccc
Confidence 555555543
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.6e-17 Score=162.58 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=150.1
Q ss_pred CCCCCCChhhhhcccCCCEEecCCcc-ccccchhh-ccCCCccEEEecC-CCCCcCC--CCCCCCCCCEEEccCCcCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEI-LHANSVIR-SLNSSSAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~-l~~~~~l~-~L~~~L~~L~Ls~-N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~i 420 (645)
..+...++..+..+++|+.|+|++|. +..+.... .-.++|++|+|++ |.|+.++ .|..+++|+.|+|++|.|+.+
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc
Confidence 34445555678889999999999996 77665422 2337999999998 9999987 578999999999999999998
Q ss_pred CCCCCCCCCC---EEecCCC-CCCCCcC--CCCCCCCc-EEEccCCccccccCcCcCCCCCcEEEccCCC-CCCc--ccc
Q 006427 421 PTGSMPKGLH---TLNLSRN-KINTIEG--LREMTRLR-VLDLSYNRIFRIGHGLSNCTLIKELYLAGNK-ISDI--EGL 490 (645)
Q Consensus 421 p~~~~~~sL~---~LdLs~N-~Ls~lp~--L~~L~sL~-~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~-Ls~l--~~l 490 (645)
+......+|+ +|+|++| .|+.++. |..+++|+ .|+|++|.|+.+|......++|+.|+|++|+ |+.+ ..|
T Consensus 121 p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTT
T ss_pred cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh
Confidence 8733347777 9999999 9998854 88999999 9999999999999875555899999999995 9887 357
Q ss_pred cCC-CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCC
Q 006427 491 HRL-LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNP 531 (645)
Q Consensus 491 ~~L-~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~ 531 (645)
..+ ++|+.|+|++|+|+.+ |.. .+++|+.|++.++.
T Consensus 201 ~~l~~~L~~L~l~~N~l~~l---~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTAL---PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCSBCCSEEECTTCCCCCC---CCT--TCTTCSEEECTTC-
T ss_pred hccccCCcEEECCCCccccC---Chh--HhccCceeeccCcc
Confidence 888 9999999999999985 332 78999999998763
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=4.8e-17 Score=165.59 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=139.6
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+..+.+|+.|+|++|.+..+..+.. .++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.... ++|+.|+|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~-l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQF-FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred chhhcCcCcEEECcCCCcccchHHhh-CCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence 57889999999999999987764433 38999999999999999889999999999999999999887666 89999999
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCc
Q 006427 435 SRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 435 s~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
++|.|++++.+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+++..+..+++|+.|+|++|.++..
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 9999999999999999999999999999986 7889999999999999999998899999999999999999874
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=192.29 Aligned_cols=91 Identities=16% Similarity=0.083 Sum_probs=64.2
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006427 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i 573 (645)
.+|+.|+|++|.+.++ .+..+..+++|+.|+|++|.+.+..|.. +..+++|++|+. +.|.+.+..+..+
T Consensus 266 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~------~~~l~~L~~L~L---s~N~l~~~~~~~~ 334 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL--NSRVFETLKDLKVLNLAYNKINKIADEA------FYGLDNLQVLNL---SYNLLGELYSSNF 334 (844)
T ss_dssp SCCCEEECTTCCCCEE--CSCCSSSCCCCCEEEEESCCCCEECTTT------TTTCSSCCEEEE---ESCCCSCCCSCSC
T ss_pred CCccEEECCCCccccc--ChhhhhcCCCCCEEECCCCcCCCCChHH------hcCCCCCCEEEC---CCCCCCccCHHHh
Confidence 5788888888888775 4567788889999999999888766654 677888888876 4455554444333
Q ss_pred HHHHhcCCCCccccccccccCCccCccC
Q 006427 574 AKAVLGNSSQSSQRKAVKRTGRSGSLPS 601 (645)
Q Consensus 574 ~~~~l~~~~~sl~~~~l~~n~lSG~iPs 601 (645)
.. ...++.+.++.|.+.+..+.
T Consensus 335 ~~------l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 335 YG------LPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SS------CTTCCEEECCSCCCCCCCSS
T ss_pred cC------CCCCCEEECCCCCCCccChh
Confidence 21 24677788888888665544
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.7e-17 Score=175.54 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=127.8
Q ss_pred CCCCCChhhhhcccCCCEEecCCccccccch------hhccCCCccEEEecCCCCCcCC--CCCCC-----CCCCEEEcc
Q 006427 347 ETGKSPARSTAHLTRRSEINLSEEILHANSV------IRSLNSSSAVAHIAGIGLKAIP--TISHF-----SSLRSVNLS 413 (645)
Q Consensus 347 ~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~------l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L-----~~L~~LdLs 413 (645)
.+.+.++..+....+|+.|+|++|.+..... +..+..+|+.|+|++|.|+... .+..+ ++|++|+|+
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3344444444445557777777776665432 1222226677777777666543 23332 667777777
Q ss_pred CCcCCCCCCCC-------CCCCCCEEecCCCCCCCCcC------CCC-CCCCcEEEccCCccc-----cccCcCcCCC-C
Q 006427 414 NNFIVHIPTGS-------MPKGLHTLNLSRNKINTIEG------LRE-MTRLRVLDLSYNRIF-----RIGHGLSNCT-L 473 (645)
Q Consensus 414 ~N~Lt~ip~~~-------~~~sL~~LdLs~N~Ls~lp~------L~~-L~sL~~LdLS~N~Ls-----~LP~~l~~L~-s 473 (645)
+|.|+...... ++++|++|+|++|.|+.... +.. .++|++|+|++|.|+ .++..+..++ +
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 77766544321 11467777777777665421 333 246777777777666 2333344444 6
Q ss_pred CcEEEccCCCCCCcc------cccCC-CCCCEEECcCCCCCCc--cchhHhhhc-CCCCcEEEccCCCCCcCCChhHHHH
Q 006427 474 IKELYLAGNKISDIE------GLHRL-LKLTVLDMSFNKITTT--KALGQLVAN-YQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 474 L~~L~Ls~N~Ls~l~------~l~~L-~~L~~LdLS~N~Ls~~--~~LP~~l~~-L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
|++|+|++|.|++.. .+..+ .+|++|+|++|.|++. ..++..+.. .++|+.|+|++|.|.+. +...+.
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~- 246 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP-SLENLK- 246 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC-CHHHHH-
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH-HHHHHH-
Confidence 777777777665541 23344 3677777777766542 123444444 34677777777766652 222222
Q ss_pred HHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcC-CCCccccccccccCCccC
Q 006427 544 AVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGN-SSQSSQRKAVKRTGRSGS 598 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~~~Is~n~~~g~i~~~i~~~~l~~-~~~sl~~~~l~~n~lSG~ 598 (645)
.++..+++|+.|+. ..|.+.+.....+....-.. ....+..++++.|.+.+.
T Consensus 247 ~~~~~l~~L~~L~L---~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYL---DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEE---EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhcCCCccEEEe---ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 23345556666654 44443333333232221111 123344556666655543
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=2.6e-16 Score=174.94 Aligned_cols=189 Identities=19% Similarity=0.165 Sum_probs=121.6
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC---CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCE
Q 006427 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHT 431 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP---sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~ 431 (645)
..+.+|+.+++..+............+.|+.+++..+++..+. .+..+.+|+.+++++|.+..+.+..+. +.|+.
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 3344444444444433322222222255666666666554332 356677777777777777766655443 67778
Q ss_pred EecCCCCCCC-C-c-CCCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCC
Q 006427 432 LNLSRNKINT-I-E-GLREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 432 LdLs~N~Ls~-l-p-~L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~ 505 (645)
|+|++|.+.. + + .|..+++|++|+|++|+|+.+++ .|.++++|++|+|++|+|+++ ..|..+++|++|+|++|+
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 8887776432 2 3 36777788888888888876643 477778888888888887776 346777788888888888
Q ss_pred CCCccchhHhhhcC-CCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006427 506 ITTTKALGQLVANY-QSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 506 Ls~~~~LP~~l~~L-~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
|+++ .|..+..+ ++|++|+|++|++.|.+....|..|+-.
T Consensus 554 l~~~--~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 554 IMTS--KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp CCBC--CSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred CCCC--CHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 8776 45666666 5788888888888877766656665543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.6e-17 Score=156.23 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=130.8
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCC--CCCCCEE
Q 006427 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTL 432 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~--~~sL~~L 432 (645)
...++.+|+.|+|++|.+..+..+..+ ++|+.|+|++|.++.++.+..+++|+.|+|++|.++...+..+ .++|++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l-~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYA-HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGC-TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred ChhhcCCccEEeccCCCccChHHHhcC-CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 347788999999999999876644333 7999999999999998889999999999999999997433333 3899999
Q ss_pred ecCCCCCCC--CcCCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCC
Q 006427 433 NLSRNKINT--IEGLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 433 dLs~N~Ls~--lp~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~Ls~ 508 (645)
+|++|.|+. +..+..+++|++|+|++|. ++.+| .+..+++|++|+|++|.|++++.+..+++|+.|++++|+|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 999999997 4568999999999999998 88887 789999999999999999999889999999999999999865
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=3e-17 Score=174.52 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=140.8
Q ss_pred ChhhhhcccCCCEEecCCccccccchh-----hccCCCccEEEecCCCCCcC----C-C-------CCCCCCCCEEEccC
Q 006427 352 PARSTAHLTRRSEINLSEEILHANSVI-----RSLNSSSAVAHIAGIGLKAI----P-T-------ISHFSSLRSVNLSN 414 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l-----~~L~~~L~~L~Ls~N~Lt~I----P-s-------L~~L~~L~~LdLs~ 414 (645)
++..+..+++|+.|+|++|.+...... ..-.++|+.|+|++|.+..+ | . +..+++|+.|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345666677777777777776643221 11236777777777655432 2 1 35677777777777
Q ss_pred CcCCCCCC----CCC--CCCCCEEecCCCCCCCC-----c-CCCCC---------CCCcEEEccCCccc--ccc---CcC
Q 006427 415 NFIVHIPT----GSM--PKGLHTLNLSRNKINTI-----E-GLREM---------TRLRVLDLSYNRIF--RIG---HGL 468 (645)
Q Consensus 415 N~Lt~ip~----~~~--~~sL~~LdLs~N~Ls~l-----p-~L~~L---------~sL~~LdLS~N~Ls--~LP---~~l 468 (645)
|.|+.... ..+ .++|++|+|++|.|+.. . .+..+ ++|++|+|++|.|+ .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77765211 111 26777777777777532 1 12233 67777777777775 344 345
Q ss_pred cCCCCCcEEEccCCCCCC------cc-cccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006427 469 SNCTLIKELYLAGNKISD------IE-GLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 469 ~~L~sL~~L~Ls~N~Ls~------l~-~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
..+++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+.. ..+|..+..+++|+.|+|++|.|.+....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~- 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA- 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-
Confidence 567777777777777762 13 566777777777777777521 23666677777777777777777652111
Q ss_pred HHHHHH-hcCCCCCceecccCCChhhhhh----hhhHHHHHHHhcCCCCccccccccccCCccCc
Q 006427 540 QLRKAV-CSLLPKLVYLNKQPIKPQRARE----LLTDSIAKAVLGNSSQSSQRKAVKRTGRSGSL 599 (645)
Q Consensus 540 ~l~~~v-l~~L~~L~~Ld~~~Is~n~~~g----~i~~~i~~~~l~~~~~sl~~~~l~~n~lSG~i 599 (645)
.+...+ .+.+++|+.|+. ..|.+.+ .++..+... ...+..+.++.|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L---~~n~i~~~g~~~l~~~l~~~-----l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRL---QYNEIELDAVRTLKTVIDEK-----MPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEEC---CSSCCBHHHHHHHHHHHHHH-----CTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEEC---cCCcCCHHHHHHHHHHHHhc-----CCCceEEEccCCcCCcch
Confidence 111111 133677777765 3444444 344444221 145566677777776644
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=6.7e-16 Score=153.63 Aligned_cols=146 Identities=16% Similarity=0.275 Sum_probs=128.4
Q ss_pred CCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCC
Q 006427 362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN 437 (645)
Q Consensus 362 L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N 437 (645)
.+.++++++.+..++ ..+.++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.++...|. ++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip--~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCC--SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccC--CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 356777777776644 344588999999999999885 589999999999999999999887654 89999999999
Q ss_pred CCCCCcC--CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 438 KINTIEG--LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 438 ~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
.|+.++. |..+++|++|+|++|.|+.+|..+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999864 78999999999999999999999999999999999999999983 488899999999999999864
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.6e-17 Score=172.03 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=174.1
Q ss_pred hhhhhcc--cCCCEEecCCccccccchhhccCCCccEEEecCCCCCc--CC-CCCCCCCCCEEEccCCcCCCCCCCC--C
Q 006427 353 ARSTAHL--TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGS--M 425 (645)
Q Consensus 353 ~~sl~~L--~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~--IP-sL~~L~~L~~LdLs~N~Lt~ip~~~--~ 425 (645)
+..+..+ ..++.+++++|.+.+......-.++|+.|+|++|.++. ++ .+..+++|+.|+|++|.++...+.. .
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 4566777 89999999999887764443334899999999999874 56 5788999999999999987432222 2
Q ss_pred CCCCCEEecCCC-CCCC--CcC-CCCCCCCcEEEccCC-cccc--ccCcCcCCC-CCcEEEccCC--CCCC--c-ccccC
Q 006427 426 PKGLHTLNLSRN-KINT--IEG-LREMTRLRVLDLSYN-RIFR--IGHGLSNCT-LIKELYLAGN--KISD--I-EGLHR 492 (645)
Q Consensus 426 ~~sL~~LdLs~N-~Ls~--lp~-L~~L~sL~~LdLS~N-~Ls~--LP~~l~~L~-sL~~L~Ls~N--~Ls~--l-~~l~~ 492 (645)
.++|++|+|++| .+++ ++. +..+++|++|+|++| .++. ++..+..++ +|++|+|++| .+++ + ..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 379999999999 7874 444 778999999999999 9983 676688899 9999999999 4543 3 44678
Q ss_pred CCCCCEEECcCCC-CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhH
Q 006427 493 LLKLTVLDMSFNK-ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTD 571 (645)
Q Consensus 493 L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~i~~ 571 (645)
+++|+.|+|++|. +++. .+..+..+++|+.|+|++|. + +....+ ..+..+++|+.|+.... +....-.
T Consensus 221 ~~~L~~L~l~~~~~l~~~--~~~~l~~l~~L~~L~l~~~~--~-~~~~~~--~~l~~~~~L~~L~l~~~----i~~~~~~ 289 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKND--CFQEFFQLNYLQHLSLSRCY--D-IIPETL--LELGEIPTLKTLQVFGI----VPDGTLQ 289 (336)
T ss_dssp CTTCSEEECTTCTTCCGG--GGGGGGGCTTCCEEECTTCT--T-CCGGGG--GGGGGCTTCCEEECTTS----SCTTCHH
T ss_pred CCCCCEEeCCCCCcCCHH--HHHHHhCCCCCCEeeCCCCC--C-CCHHHH--HHHhcCCCCCEEeccCc----cCHHHHH
Confidence 8999999999999 6653 45678899999999999996 1 222211 12567899999987543 2221111
Q ss_pred HHHHHHhcCCCCccccccccccCCccCccCCCC
Q 006427 572 SIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 572 ~i~~~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
.+. ..+..+.+..|.++|.+|...+
T Consensus 290 ~l~--------~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 290 LLK--------EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp HHH--------HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHH--------hhCcceEEecccCccccCCccc
Confidence 222 2244567899999999998775
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=4e-19 Score=200.83 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=148.3
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCC-------------CC-cCC-CCCCCCCCCEEE-ccCCc----
Q 006427 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIG-------------LK-AIP-TISHFSSLRSVN-LSNNF---- 416 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~-------------Lt-~IP-sL~~L~~L~~Ld-Ls~N~---- 416 (645)
..+.+|+.|+|++|.+..++......++|+.|++++|. +. .+| .++.|++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 44566777777777766543322222455666665442 22 233 356666777777 45544
Q ss_pred ---------CCCCCCCCCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc
Q 006427 417 ---------IVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI 487 (645)
Q Consensus 417 ---------Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l 487 (645)
|+.++. ..|+.|+|++|.|+++|.++.+++|+.|+|++|.|+.||..++.+++|+.|+|++|.|+++
T Consensus 426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhcccccccCc----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 333322 3699999999999999989999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEECcCCCCCCccch-hHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 488 EGLHRLLKLTVLDMSFNKITTTKAL-GQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 488 ~~l~~L~~L~~LdLS~N~Ls~~~~L-P~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
+.+..+++|+.|+|++|+|+++ . |..++.+++|+.|+|++|+|++.+|.. ..++..+++|+.||.
T Consensus 502 p~l~~l~~L~~L~Ls~N~l~~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~---~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 DGVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ---ERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGTTCSSCCEEECCSSCCCSS--STTGGGGGCTTCCEEECTTSGGGGSSSCT---THHHHHCTTCSEEEC
T ss_pred cccCCCCCCcEEECCCCCCCCC--CCcHHHhcCCCCCEEEecCCcCCCCccHH---HHHHHHCcccCccCC
Confidence 9999999999999999999985 3 788999999999999999999865432 234556899999863
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=5.8e-16 Score=164.12 Aligned_cols=150 Identities=25% Similarity=0.364 Sum_probs=129.5
Q ss_pred ccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCC---CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccC
Q 006427 385 SAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSY 458 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~---~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~ 458 (645)
.+.+++++++|+.+|. +. ..|+.|+|++|.|+.++...+. ++|+.|+|++|.|+.++ .|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3589999999999994 43 4699999999999999887653 89999999999999885 489999999999999
Q ss_pred CccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhh---hcCCCCcEEEccCCCC
Q 006427 459 NRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLV---ANYQSLLALNLLGNPI 532 (645)
Q Consensus 459 N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l---~~L~sL~~LdLs~N~L 532 (645)
|.|+.++.. |..+++|+.|+|++|.|+.+ ..|..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|.|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCCEEECCCCCC
Confidence 999988765 88999999999999999987 468999999999999999998532 334 6799999999999999
Q ss_pred CcCCChh
Q 006427 533 QSNISDD 539 (645)
Q Consensus 533 ~g~iP~~ 539 (645)
+. +|..
T Consensus 176 ~~-l~~~ 181 (361)
T 2xot_A 176 KK-LPLT 181 (361)
T ss_dssp CC-CCHH
T ss_pred Cc-cCHH
Confidence 96 6654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.3e-15 Score=150.82 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=128.1
Q ss_pred CEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCC
Q 006427 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNK 438 (645)
Q Consensus 363 ~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~ 438 (645)
+.++++++.+..++. .+.++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|+.+.+..|. ++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~--~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCS--SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCC--ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 577888888876543 44578999999999999887 589999999999999999999777665 899999999999
Q ss_pred CCCCcC--CCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCcc
Q 006427 439 INTIEG--LREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTK 510 (645)
Q Consensus 439 Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~ 510 (645)
|+.++. |..+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.+ ..+..+++|+.|+|++|.+....
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 999865 7899999999999999998754 589999999999999999998 34888999999999999997643
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=2.3e-17 Score=175.33 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=116.7
Q ss_pred hhcccCCCEEecCCccccccc-----hhh------ccCCCccEEEecCCCCCc-----CC-CCCCCCCCCEEEccCCcCC
Q 006427 356 TAHLTRRSEINLSEEILHANS-----VIR------SLNSSSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIV 418 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~-----~l~------~L~~~L~~L~Ls~N~Lt~-----IP-sL~~L~~L~~LdLs~N~Lt 418 (645)
+..+++|+.|+|++|.+..+. .+. .-.++|++|+|++|.|+. ++ .+..+++|+.|+|++|.|+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445667777777765443221 110 122667777777777765 33 4566677777777777765
Q ss_pred CCCCCCCC---------------CCCCEEecCCCCCCC--Cc----CCCCCCCCcEEEccCCccc------cccCcCcCC
Q 006427 419 HIPTGSMP---------------KGLHTLNLSRNKINT--IE----GLREMTRLRVLDLSYNRIF------RIGHGLSNC 471 (645)
Q Consensus 419 ~ip~~~~~---------------~sL~~LdLs~N~Ls~--lp----~L~~L~sL~~LdLS~N~Ls------~LP~~l~~L 471 (645)
......+. ++|++|+|++|.|+. ++ .+..+++|++|+|++|.|+ -++..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 32221111 467777777777752 23 2455667777777777776 123356667
Q ss_pred CCCcEEEccCCCCCC-----c-ccccCCCCCCEEECcCCCCCCc--cchhHhhhc--CCCCcEEEccCCCCCcCCChhHH
Q 006427 472 TLIKELYLAGNKISD-----I-EGLHRLLKLTVLDMSFNKITTT--KALGQLVAN--YQSLLALNLLGNPIQSNISDDQL 541 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~-----l-~~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~--L~sL~~LdLs~N~L~g~iP~~~l 541 (645)
++|+.|+|++|.|+. + ..+..+++|++|+|++|.|++. ..++..+.. +++|+.|+|++|.|++. ....+
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~-g~~~l 294 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-AVRTL 294 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH-HHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH-HHHHH
Confidence 777777777777642 2 3456667777777777777653 223445533 67777777777777652 01112
Q ss_pred HHHHhcCCCCCceecc
Q 006427 542 RKAVCSLLPKLVYLNK 557 (645)
Q Consensus 542 ~~~vl~~L~~L~~Ld~ 557 (645)
...+...+++|++|+.
T Consensus 295 ~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHCTTCCEEEC
T ss_pred HHHHHhcCCCceEEEc
Confidence 2333355677776664
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=8.3e-17 Score=170.27 Aligned_cols=220 Identities=15% Similarity=0.176 Sum_probs=159.4
Q ss_pred hhhhccc-CCCEEecCCccccccch--hhcc----CCCccEEEecCCCCCcCC-C-----CCCC-CCCCEEEccCCcCCC
Q 006427 354 RSTAHLT-RRSEINLSEEILHANSV--IRSL----NSSSAVAHIAGIGLKAIP-T-----ISHF-SSLRSVNLSNNFIVH 419 (645)
Q Consensus 354 ~sl~~L~-~L~~LdLS~n~l~~~~~--l~~L----~~~L~~L~Ls~N~Lt~IP-s-----L~~L-~~L~~LdLs~N~Lt~ 419 (645)
..+..++ +|+.|+|++|.+..... +..+ .++|+.|+|++|.|+..+ . +..+ ++|+.|+|++|.|+.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 6677888 89999999999886533 2222 378999999999999765 2 4455 899999999999988
Q ss_pred CCCCCC-------CCCCCEEecCCCCCCCC------cCCCCCC-CCcEEEccCCccccccC-----cCcCC-CCCcEEEc
Q 006427 420 IPTGSM-------PKGLHTLNLSRNKINTI------EGLREMT-RLRVLDLSYNRIFRIGH-----GLSNC-TLIKELYL 479 (645)
Q Consensus 420 ip~~~~-------~~sL~~LdLs~N~Ls~l------p~L~~L~-sL~~LdLS~N~Ls~LP~-----~l~~L-~sL~~L~L 479 (645)
.+...+ +.+|++|+|++|.|+.. ..+..++ +|++|+|++|.|+.... .+..+ ++|++|+|
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 765432 35899999999999853 1245555 99999999999985442 34555 59999999
Q ss_pred cCCCCCC-----c-ccccC-CCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC
Q 006427 480 AGNKISD-----I-EGLHR-LLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP 550 (645)
Q Consensus 480 s~N~Ls~-----l-~~l~~-L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~ 550 (645)
++|.|++ + ..+.. .++|++|+|++|.|++. ..+...+..+++|+.|+|++|.+.+ +....+ ..+...++
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~-i~~~~~-~~l~~~~~ 281 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN-MSKEQC-KALGAAFP 281 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT-CCHHHH-HHHHTTST
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc-cCHHHH-HHHHHHhc
Confidence 9999988 3 33444 46999999999999875 2345566888999999999999765 333322 23334444
Q ss_pred CCceecccCCChhhhhhhhhHHHHH
Q 006427 551 KLVYLNKQPIKPQRARELLTDSIAK 575 (645)
Q Consensus 551 ~L~~Ld~~~Is~n~~~g~i~~~i~~ 575 (645)
++..|...++..|++.+..+..+.+
T Consensus 282 ~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 282 NIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp TCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred cCCceEEEecCCCcCCCcchHHHHH
Confidence 4444444445677666664444443
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=150.57 Aligned_cols=142 Identities=24% Similarity=0.341 Sum_probs=126.0
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc---CCCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEccCC
Q 006427 407 LRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE---GLREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYLAGN 482 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp---~L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~Ls~N 482 (645)
-+.|++++|.++.+|. .++..++.|+|++|.|+.++ .|..+++|++|+|++|.|+.++. .|..+++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4689999999999976 44567899999999999873 27899999999999999998876 5999999999999999
Q ss_pred CCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 483 KISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 483 ~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
.|+++ ..|..+++|++|+|++|.|+++ .|..+..+++|+.|+|++|.|++..|.. +..+++|+.|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L 160 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCV--GNDSFIGLSSVRLLSLYDNQITTVAPGA------FDTLHSLSTLNL 160 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCB--CTTSSTTCTTCSEEECTTSCCCCBCTTT------TTTCTTCCEEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeE--CHhHcCCCccCCEEECCCCcCCEECHHH------hcCCCCCCEEEe
Confidence 99998 3489999999999999999997 5678899999999999999999866765 778899998876
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.2e-15 Score=147.89 Aligned_cols=133 Identities=26% Similarity=0.349 Sum_probs=99.9
Q ss_pred CEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcC---CCCCCCCcEEEccCCccccc-cCcCcCCCCCcEEEccCCC
Q 006427 408 RSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRLRVLDLSYNRIFRI-GHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 408 ~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~---L~~L~sL~~LdLS~N~Ls~L-P~~l~~L~sL~~L~Ls~N~ 483 (645)
+.|++++|.|+.+|... +.+|+.|+|++|.|+.++. +..+++|++|+|++|.|+.+ |..|..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56666666666665433 3467777777777776642 67788888888888888866 4557888888888888888
Q ss_pred CCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006427 484 ISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 484 Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
|+++ ..|..+++|++|+|++|+|+++ .|..+..+++|++|+|++|++.|.++...+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEE--CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCee--CHHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 8876 3377888888888888888876 56778888999999999999988776554433
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=144.24 Aligned_cols=137 Identities=26% Similarity=0.343 Sum_probs=106.1
Q ss_pred CEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCC
Q 006427 408 RSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 408 ~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls 485 (645)
+.+++++|.|+.+|.. ++.+|+.|+|++|.|+.++ .|..+++|++|+|++|.|+.++.. |..+++|++|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4667777777766644 3457778888888877775 477888888888888888877654 888888888899888888
Q ss_pred Cc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006427 486 DI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 486 ~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
.+ ..|..+++|++|+|++|.|+.+ .+..+..+++|+.|+|++|++.|.+....+..++..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVV--PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCee--ChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 87 3488888999999999999875 235678899999999999999987776666655443
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1.1e-17 Score=162.39 Aligned_cols=141 Identities=32% Similarity=0.453 Sum_probs=119.1
Q ss_pred CCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCC
Q 006427 427 KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~~L~~LdLS~N~L 506 (645)
++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|..+..+++|++|+|++|.|++++.+..+++|++|+|++|.|
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEEC
T ss_pred CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcC
Confidence 56777777777777777777888999999999999988877777889999999999999988888889999999999999
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCCCh----hHHHHHHhcCCCCCceecccCCChhhhhhh
Q 006427 507 TTTKALGQLVANYQSLLALNLLGNPIQSNISD----DQLRKAVCSLLPKLVYLNKQPIKPQRAREL 568 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~----~~l~~~vl~~L~~L~~Ld~~~Is~n~~~g~ 568 (645)
+++..+ ..+..+++|++|+|++|++.+.+|. ..++..++..+++|+.||..+++..+...+
T Consensus 128 ~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a 192 (198)
T 1ds9_A 128 TNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192 (198)
T ss_dssp CCHHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHH
T ss_pred CchhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHH
Confidence 985322 4688999999999999999887665 567777889999999999998887666554
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=2.7e-16 Score=169.63 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=103.7
Q ss_pred hhhhhcccCCCEEecCCccccccch--hhc-cC---CCccEEEecCCCCCc-----CC-CCCCCCCCCEEEccCCcCCCC
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSV--IRS-LN---SSSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~--l~~-L~---~~L~~L~Ls~N~Lt~-----IP-sL~~L~~L~~LdLs~N~Lt~i 420 (645)
+..+..+++|+.|+|++|.+..... +.. +. ++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 4556667888888888887765322 222 22 268888888888873 34 577888888888888887642
Q ss_pred CCCCC-------CCCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCcccccc-CcCc-----CCCCCcEEEccC
Q 006427 421 PTGSM-------PKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFRIG-HGLS-----NCTLIKELYLAG 481 (645)
Q Consensus 421 p~~~~-------~~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls~LP-~~l~-----~L~sL~~L~Ls~ 481 (645)
....+ .++|++|+|++|.|+.. ..+..+++|++|+|++|.++... ..+. .+++|++|+|++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 21111 13677888888777652 12445667777777777665221 1111 234666666666
Q ss_pred CCCCCc------ccccCCCCCCEEECcCCCCCCcc--ch-hHhhhcCCCCcEEEccCCCCC
Q 006427 482 NKISDI------EGLHRLLKLTVLDMSFNKITTTK--AL-GQLVANYQSLLALNLLGNPIQ 533 (645)
Q Consensus 482 N~Ls~l------~~l~~L~~L~~LdLS~N~Ls~~~--~L-P~~l~~L~sL~~LdLs~N~L~ 533 (645)
|.++.. ..+..+++|++|+|++|.|++.. .+ +..+..+++|+.|+|++|.++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 666552 23444555666666666554321 01 111223455555555555554
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1e-14 Score=153.66 Aligned_cols=200 Identities=18% Similarity=0.142 Sum_probs=152.1
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccch---hhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCC
Q 006427 346 PETGKSPARSTAHLTRRSEINLSEEILHANSV---IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~---l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~i 420 (645)
..+...++..+.++++|+.|+|++|.+..... +..+...++.+.+.+|+|+.++ .|..+++|+.|++++|.|+.+
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 44555556678889999999999998754322 2233333456788889999886 588999999999999999998
Q ss_pred CCCCCC--CCCCEEecCC-CCCCCCcC--CCCC-CCCcEEEccCCccccccCcCcCCCCCcEEEcc-CCCCCCcc--ccc
Q 006427 421 PTGSMP--KGLHTLNLSR-NKINTIEG--LREM-TRLRVLDLSYNRIFRIGHGLSNCTLIKELYLA-GNKISDIE--GLH 491 (645)
Q Consensus 421 p~~~~~--~sL~~LdLs~-N~Ls~lp~--L~~L-~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls-~N~Ls~l~--~l~ 491 (645)
++..+. .++..|++.+ |.|..++. |..+ ..|+.|+|++|.|+.||..+....+|+.|++. +|.++.++ .|.
T Consensus 120 ~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT
T ss_pred CchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc
Confidence 877665 5677888855 57877643 5555 46899999999999999887777899999997 47888873 478
Q ss_pred CCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 492 RLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 492 ~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
.+++|++|+|++|+|+.+ |. ..+.+|+.|.+.++.-...+|. +..+++|+.++.
T Consensus 200 ~l~~L~~LdLs~N~l~~l---p~--~~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l 253 (350)
T 4ay9_X 200 GASGPVILDISRTRIHSL---PS--YGLENLKKLRARSTYNLKKLPT-------LEKLVALMEASL 253 (350)
T ss_dssp TEECCSEEECTTSCCCCC---CS--SSCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEEC
T ss_pred cCcccchhhcCCCCcCcc---Ch--hhhccchHhhhccCCCcCcCCC-------chhCcChhhCcC
Confidence 999999999999999985 33 3467788888777655555663 456788887776
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=1.8e-16 Score=171.01 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=86.6
Q ss_pred hhhhhcccCCCEEecCCccccccch--hhc----cCCCccEEEecCCCCCcC-----C-CCCCCCCCCEEEccCCcCCCC
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSV--IRS----LNSSSAVAHIAGIGLKAI-----P-TISHFSSLRSVNLSNNFIVHI 420 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~--l~~----L~~~L~~L~Ls~N~Lt~I-----P-sL~~L~~L~~LdLs~N~Lt~i 420 (645)
+..+..+++|+.|+|++|.+..... +.. ..++|+.|+|++|.|+.. + .+..+++|+.|+|++|.++..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 5566777788888888877654321 111 124677788887777742 2 245567777777777776543
Q ss_pred CCCCC-------CCCCCEEecCCCCCCCC-----c-CCCCCCCCcEEEccCCccccc-----cCc-CcCCCCCcEEEccC
Q 006427 421 PTGSM-------PKGLHTLNLSRNKINTI-----E-GLREMTRLRVLDLSYNRIFRI-----GHG-LSNCTLIKELYLAG 481 (645)
Q Consensus 421 p~~~~-------~~sL~~LdLs~N~Ls~l-----p-~L~~L~sL~~LdLS~N~Ls~L-----P~~-l~~L~sL~~L~Ls~ 481 (645)
....+ .++|++|+|++|.++.. + .+..+++|++|+|++|.|+.. ... +..+++|++|+|++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 22111 13666677766666652 1 244556666666666665521 111 22455666666666
Q ss_pred CCCCC-----c-ccccCCCCCCEEECcCCCCC
Q 006427 482 NKISD-----I-EGLHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 482 N~Ls~-----l-~~l~~L~~L~~LdLS~N~Ls 507 (645)
|.|+. + ..+..+++|++|+|++|.|+
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 65554 2 22444555555555555554
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=7.5e-16 Score=178.73 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=118.3
Q ss_pred EEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCccccc
Q 006427 388 AHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRI 464 (645)
Q Consensus 388 L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~L 464 (645)
+++..|.+...+ .+..++.|+.|+|++|.|..++...+. ++|++|+|++|.|+.+|. |+.|++|++|+|++|.|+.|
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 344455555444 588899999999999999988876554 899999999999998864 89999999999999999999
Q ss_pred cCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCC-CcEEEccCCCCCcCCChh
Q 006427 465 GHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQS-LLALNLLGNPIQSNISDD 539 (645)
Q Consensus 465 P~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~s-L~~LdLs~N~L~g~iP~~ 539 (645)
|..|+.|++|++|+|++|.|+.+ ..|..+++|++|+|++|.|++. +|..+..+.. +..|+|++|.+.+.+|..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ--FLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC--ChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 99999999999999999999988 4599999999999999999986 6676655422 234789999999988764
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=4.8e-15 Score=156.23 Aligned_cols=190 Identities=17% Similarity=0.114 Sum_probs=146.5
Q ss_pred cCCCEEecCCccccccchhh-ccCCCccEEEecCCCCC-cCC--CCCCCCCCCE-EEccCCcCCCCCCCCCC--CCCCEE
Q 006427 360 TRRSEINLSEEILHANSVIR-SLNSSSAVAHIAGIGLK-AIP--TISHFSSLRS-VNLSNNFIVHIPTGSMP--KGLHTL 432 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~-~L~~~L~~L~Ls~N~Lt-~IP--sL~~L~~L~~-LdLs~N~Lt~ip~~~~~--~sL~~L 432 (645)
.+++.|+|++|.+..++.-. .-.++|+.|+|++|.+. .+| .|..+++|.. +.+.+|+|+.+++..|. ++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 47899999999998765422 22378999999999985 466 4788888775 66778999999888765 899999
Q ss_pred ecCCCCCCCCcC--CCCCCCCcEEEccC-CccccccCc-CcCCC-CCcEEEccCCCCCCc-ccccCCCCCCEEECcC-CC
Q 006427 433 NLSRNKINTIEG--LREMTRLRVLDLSY-NRIFRIGHG-LSNCT-LIKELYLAGNKISDI-EGLHRLLKLTVLDMSF-NK 505 (645)
Q Consensus 433 dLs~N~Ls~lp~--L~~L~sL~~LdLS~-N~Ls~LP~~-l~~L~-sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~-N~ 505 (645)
++++|.|+.++. +.....+..|++.+ |.+..++.. |..+. .|+.|+|++|+|+.+ .......+|+.|++++ |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 999999998865 44566788888865 678888765 55554 689999999999988 4455667899999975 77
Q ss_pred CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
++.++. ..|..+++|+.|+|++|.|+. +|.. .+..|++|+.++.
T Consensus 190 l~~i~~--~~f~~l~~L~~LdLs~N~l~~-lp~~-----~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 190 LEELPN--DVFHGASGPVILDISRTRIHS-LPSY-----GLENLKKLRARST 233 (350)
T ss_dssp CCCCCT--TTTTTEECCSEEECTTSCCCC-CCSS-----SCTTCCEEECTTC
T ss_pred ccCCCH--HHhccCcccchhhcCCCCcCc-cChh-----hhccchHhhhccC
Confidence 877532 567999999999999999986 6654 2444555554443
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=8.8e-16 Score=158.97 Aligned_cols=193 Identities=19% Similarity=0.164 Sum_probs=154.6
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCC--CCCC-CCCCCCCEEecCC
Q 006427 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVH--IPTG-SMPKGLHTLNLSR 436 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~--ip~~-~~~~sL~~LdLs~ 436 (645)
.++.++|+++.+............++.|++++|.+..++ .+..+++|+.|+|++|.++. ++.. ...++|++|+|++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 377899999887743222223378999999999998765 67889999999999999874 3321 2237999999999
Q ss_pred CCCCCC--cCCCCCCCCcEEEccCC-ccc--cccCcCcCCCCCcEEEccCC-CCCCc---ccccCCC-CCCEEECcCC--
Q 006427 437 NKINTI--EGLREMTRLRVLDLSYN-RIF--RIGHGLSNCTLIKELYLAGN-KISDI---EGLHRLL-KLTVLDMSFN-- 504 (645)
Q Consensus 437 N~Ls~l--p~L~~L~sL~~LdLS~N-~Ls--~LP~~l~~L~sL~~L~Ls~N-~Ls~l---~~l~~L~-~L~~LdLS~N-- 504 (645)
|.+++. ..+..+++|++|+|++| .++ .++..+..+++|++|+|++| .+++. ..+..++ +|++|+|++|
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 998853 35888999999999999 788 47766889999999999999 99863 4477889 9999999999
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCC-CCcCCChhHHHHHHhcCCCCCceecccCC
Q 006427 505 KITTTKALGQLVANYQSLLALNLLGNP-IQSNISDDQLRKAVCSLLPKLVYLNKQPI 560 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~-L~g~iP~~~l~~~vl~~L~~L~~Ld~~~I 560 (645)
.++. ..++..+..+++|+.|+|++|. +++..+.. +..+++|+.|+....
T Consensus 208 ~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 208 NLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE------FFQLNYLQHLSLSRC 257 (336)
T ss_dssp GSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGGGGG------GGGCTTCCEEECTTC
T ss_pred cCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH------HhCCCCCCEeeCCCC
Confidence 4553 2477888999999999999999 66655554 677899999998544
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1.2e-15 Score=145.25 Aligned_cols=107 Identities=28% Similarity=0.382 Sum_probs=53.1
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcC-cCCCCCcEEE
Q 006427 401 ISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGL-SNCTLIKELY 478 (645)
Q Consensus 401 L~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l-~~L~sL~~L~ 478 (645)
+..+.+|+.|+|++|.|+.++..... ++|++|+|++|.|++++.+..+++|++|+|++|.|+.+|..+ ..+++|++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34455556666666665554321111 255555555555555544555555555555555555555432 4455555555
Q ss_pred ccCCCCCCcc---cccCCCCCCEEECcCCCCC
Q 006427 479 LAGNKISDIE---GLHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 479 Ls~N~Ls~l~---~l~~L~~L~~LdLS~N~Ls 507 (645)
|++|.|+.++ .+..+++|+.|+|++|.|+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555554432 2334444444444444443
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=3.5e-14 Score=134.74 Aligned_cols=128 Identities=24% Similarity=0.393 Sum_probs=97.0
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCC
Q 006427 407 LRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNK 483 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~ 483 (645)
.+.+++++|.++.+|.. ++++|+.|+|++|.|++++. +..+++|++|+|++|.|+.++.. +..+++|++|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 45666677777666633 33577777777777776643 67788888888888888877765 6788888888888888
Q ss_pred CCCcc--cccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 484 ISDIE--GLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 484 Ls~l~--~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
|++++ .+..+++|++|+|++|.|+++ .+..+..+++|+.|+|++|++.|.+|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEe--CHHHhcCCcccCEEEecCCCeeccCc
Confidence 88873 367888899999999988875 23456788999999999999988665
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.8e-15 Score=137.20 Aligned_cols=130 Identities=25% Similarity=0.271 Sum_probs=86.6
Q ss_pred CCCCEEEccCCcCC--CCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCcccc-ccCcCcCCCCCcEEEcc
Q 006427 405 SSLRSVNLSNNFIV--HIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR-IGHGLSNCTLIKELYLA 480 (645)
Q Consensus 405 ~~L~~LdLs~N~Lt--~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~-LP~~l~~L~sL~~L~Ls 480 (645)
++|+.|+|++|.|+ .++... ..++|++|+|++|.|+.+..+..+++|++|+|++|.|+. +|..+..+++|++|+|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45666666666665 444331 125666666666666666556777777777777777775 55445567778888888
Q ss_pred CCCCCCc---ccccCCCCCCEEECcCCCCCCccch-hHhhhcCCCCcEEEccCCCCCc
Q 006427 481 GNKISDI---EGLHRLLKLTVLDMSFNKITTTKAL-GQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 481 ~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~L-P~~l~~L~sL~~LdLs~N~L~g 534 (645)
+|.|+++ ..+..+++|++|+|++|.|+++... ...+..+++|+.|++++|.+..
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8877775 3567777888888888887764211 1367778888888888887764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.7e-14 Score=137.23 Aligned_cols=123 Identities=26% Similarity=0.346 Sum_probs=104.4
Q ss_pred cEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCC-CCC--CCCCEEecCCCCCCCC-c-CCCCCCCCcEEEccCC
Q 006427 386 AVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTG-SMP--KGLHTLNLSRNKINTI-E-GLREMTRLRVLDLSYN 459 (645)
Q Consensus 386 ~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~-~~~--~sL~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N 459 (645)
+.|++++|+|+.+|. +. .+|+.|+|++|.|+.+++. .+. ++|++|+|++|.|+++ + .|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 578899999998884 43 3899999999999988764 333 8899999999999987 3 4889999999999999
Q ss_pred ccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCcc
Q 006427 460 RIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTK 510 (645)
Q Consensus 460 ~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~ 510 (645)
.|+.++.. |..+++|++|+|++|+|+++ ..+..+++|++|+|++|.+....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99987765 88899999999999999887 45888999999999999998753
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.2e-14 Score=138.18 Aligned_cols=134 Identities=28% Similarity=0.339 Sum_probs=113.9
Q ss_pred CCCCCEEecCCCCCCCCcCCCCCC-CCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcc-c-ccCCCCCCEEECc
Q 006427 426 PKGLHTLNLSRNKINTIEGLREMT-RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIE-G-LHRLLKLTVLDMS 502 (645)
Q Consensus 426 ~~sL~~LdLs~N~Ls~lp~L~~L~-sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~-~-l~~L~~L~~LdLS 502 (645)
+.+|+.|+|++|.|+.++.+..+. +|++|+|++|.|+.+ ..+..+++|++|+|++|.|+.++ . +..+++|++|+|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 478999999999999998877766 999999999999988 57999999999999999999884 3 5889999999999
Q ss_pred CCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhh
Q 006427 503 FNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQR 564 (645)
Q Consensus 503 ~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~Is~n~ 564 (645)
+|.|+.++.+ ..+..+++|+.|+|++|++.. +|. ++..++..+++|++||...+...+
T Consensus 97 ~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~-~~~--~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 97 NNSLVELGDL-DPLASLKSLTYLCILRNPVTN-KKH--YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SCCCCCGGGG-GGGGGCTTCCEEECCSSGGGG-STT--HHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCcCCcchhh-HhhhcCCCCCEEEecCCCCCC-cHh--HHHHHHHHCCccceeCCCcCCHHH
Confidence 9999874321 268899999999999999985 553 345567889999999987666544
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=7.8e-15 Score=170.21 Aligned_cols=149 Identities=22% Similarity=0.234 Sum_probs=83.6
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCC---------CCCCCCC--CCCCEEecCCCCCCCCc-CCCCCCC
Q 006427 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVH---------IPTGSMP--KGLHTLNLSRNKINTIE-GLREMTR 450 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~---------ip~~~~~--~sL~~LdLs~N~Ls~lp-~L~~L~s 450 (645)
+.++.|.|.+|.+..++. ..|+.++|+.|.|.. +++..+. ..|+.|+|++|.|..++ .+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchh----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 456788888888887662 123334444444332 2233332 67888888888887775 4667788
Q ss_pred CcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccC
Q 006427 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLG 529 (645)
Q Consensus 451 L~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~ 529 (645)
|++|+|++|.|+.||..|+.|++|++|+|++|.|+.+ ..|..|.+|++|+|++|.|+. +|..|+.+++|+.|+|++
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT---LPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC---CCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc---cChhhhcCCCccEEeCCC
Confidence 8888888888887877777888888888888888776 457777888888888887775 566677888888888888
Q ss_pred CCCCcCCCh
Q 006427 530 NPIQSNISD 538 (645)
Q Consensus 530 N~L~g~iP~ 538 (645)
|+|.+.+|.
T Consensus 326 N~l~~~~p~ 334 (727)
T 4b8c_D 326 NPLEKQFLK 334 (727)
T ss_dssp SCCCSHHHH
T ss_pred CccCCCChH
Confidence 888775554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3e-14 Score=131.25 Aligned_cols=126 Identities=27% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCCEEecCCCCCC--CCcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCC-cc-cccCCCCCCEEEC
Q 006427 427 KGLHTLNLSRNKIN--TIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISD-IE-GLHRLLKLTVLDM 501 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls--~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~-l~-~l~~L~~L~~LdL 501 (645)
++|+.|+|++|.++ .++. +..+++|++|+|++|.|+.+ ..+..+++|++|+|++|.|++ ++ .+..+++|++|+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34555555555555 3332 45556666666666666655 445566666666666666665 32 2344666666666
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
++|.|+++. .+..+..+++|+.|+|++|++++..+ ++...+..+++|++||.
T Consensus 96 s~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETT
T ss_pred CCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccC
Confidence 666666532 12456666677777777776665322 22223555666776665
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2e-14 Score=135.11 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=103.1
Q ss_pred CCCccEEEecCCCCC--cCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCC-CcC-CCCCCCCcEEEc
Q 006427 382 NSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT-IEG-LREMTRLRVLDL 456 (645)
Q Consensus 382 ~~~L~~L~Ls~N~Lt--~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~-lp~-L~~L~sL~~LdL 456 (645)
.++|+.|+|++|.|+ .+| .+..+++|+.|+|++|.|+.+......++|++|+|++|.|++ ++. +..+++|++|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 367888888888888 777 457888899999999988887322333788999999999887 555 445889999999
Q ss_pred cCCcccccc--CcCcCCCCCcEEEccCCCCCCcc-----cccCCCCCCEEECcCCCCCCc
Q 006427 457 SYNRIFRIG--HGLSNCTLIKELYLAGNKISDIE-----GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 457 S~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l~-----~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
++|.|+.+| ..+..+++|++|+|++|.|++++ .+..+++|++|++++|.+..+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999998876 56888899999999999988873 478889999999999988764
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.5e-13 Score=127.83 Aligned_cols=124 Identities=26% Similarity=0.391 Sum_probs=103.5
Q ss_pred ccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEccCCc
Q 006427 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~ 460 (645)
.+.+++++|+++.+|. ...++|+.|+|++|.|+.+++..+. ++|++|+|++|.|+.++. +..+++|++|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4578888888888882 2346899999999999888876654 789999999999988754 7889999999999999
Q ss_pred cccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 461 IFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 461 Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|+.+|.. +..+++|++|+|++|.|+.++ .+..+++|++|+|++|.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9988765 688899999999999999873 367889999999999999874
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=1.1e-13 Score=127.38 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=109.3
Q ss_pred CCCCCCEEEccCCcCC--CCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCcccc-ccCcCcCCCCCcEEE
Q 006427 403 HFSSLRSVNLSNNFIV--HIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR-IGHGLSNCTLIKELY 478 (645)
Q Consensus 403 ~L~~L~~LdLs~N~Lt--~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~-LP~~l~~L~sL~~L~ 478 (645)
..++|+.|++++|.++ .++... ..++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|..+..+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4578999999999998 666542 238999999999999999779999999999999999997 776677899999999
Q ss_pred ccCCCCCCc---ccccCCCCCCEEECcCCCCCCccchh-HhhhcCCCCcEEEccC
Q 006427 479 LAGNKISDI---EGLHRLLKLTVLDMSFNKITTTKALG-QLVANYQSLLALNLLG 529 (645)
Q Consensus 479 Ls~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~LP-~~l~~L~sL~~LdLs~ 529 (645)
|++|.|+++ ..+..+++|++|+|++|.|+++..++ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999986 56899999999999999998853211 4789999999999864
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=131.16 Aligned_cols=121 Identities=30% Similarity=0.428 Sum_probs=98.5
Q ss_pred cEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC--CCCCCCCcEEEccCCc
Q 006427 386 AVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460 (645)
Q Consensus 386 ~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS~N~ 460 (645)
+++++++|+|+.+|. + .++|+.|+|++|.|+.++ ..+. ++|+.|+|++|.|+.++. |..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 468888888888883 3 357888888888888777 3333 788899999998888753 8889999999999999
Q ss_pred cccccCc-CcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 461 IFRIGHG-LSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 461 Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|+.++.. |..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.+...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9987764 888899999999999998873 478889999999999998753
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.4e-14 Score=163.74 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=122.7
Q ss_pred CChhhhhcccCCCEEecCCcc-------------ccccch-hhccCCCccEEE--------------ecCCCCCcCCCCC
Q 006427 351 SPARSTAHLTRRSEINLSEEI-------------LHANSV-IRSLNSSSAVAH--------------IAGIGLKAIPTIS 402 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~-------------l~~~~~-l~~L~~~L~~L~--------------Ls~N~Lt~IPsL~ 402 (645)
.+|..+.++.+|+.|++++|. +.+..+ .....++|+.|+ +.+|.|+.++.
T Consensus 363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~-- 440 (567)
T 1dce_A 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY-- 440 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc--
Confidence 356777777777777776664 111100 001113333444 34444444432
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccC
Q 006427 403 HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAG 481 (645)
Q Consensus 403 ~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~ 481 (645)
..|+.|+|++|.|+.+|.....++|+.|+|++|.|+.+| .++.+++|+.|+|++|.|+.|| .++.+++|+.|+|++
T Consensus 441 --~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 --ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp --TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred --cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 248889999999988875222378999999999998886 4888999999999999999888 888999999999999
Q ss_pred CCCCCc---ccccCCCCCCEEECcCCCCCCccc-hhHhhhcCCCCcEEEc
Q 006427 482 NKISDI---EGLHRLLKLTVLDMSFNKITTTKA-LGQLVANYQSLLALNL 527 (645)
Q Consensus 482 N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~-LP~~l~~L~sL~~LdL 527 (645)
|.|+++ ..+..+++|+.|+|++|.|++.+. +...+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999886 358889999999999999987532 2345566899999875
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.9e-12 Score=135.07 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=137.1
Q ss_pred ccCCCEEecCCccccc-------c-------------chhh-cc--------CCCccEEEecCCCCCcCC--CCCCCCCC
Q 006427 359 LTRRSEINLSEEILHA-------N-------------SVIR-SL--------NSSSAVAHIAGIGLKAIP--TISHFSSL 407 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~-------~-------------~~l~-~L--------~~~L~~L~Ls~N~Lt~IP--sL~~L~~L 407 (645)
+.+|+.|||++|.+.. . +.-. .- ..+|+.|+|.+ .++.|+ .|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6778888888888771 1 1101 11 36788888887 788887 58888888
Q ss_pred CEEEccCCcCCCCCCCCCCC--CCCEEecCCCC----CCCCc--------CC----------------------------
Q 006427 408 RSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNK----INTIE--------GL---------------------------- 445 (645)
Q Consensus 408 ~~LdLs~N~Lt~ip~~~~~~--sL~~LdLs~N~----Ls~lp--------~L---------------------------- 445 (645)
+.|+|.+|.+..+++..|.. ++..|.+..+. +..+. .+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 88888888888888877763 34444433311 01110 00
Q ss_pred ----------------CCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCC-EEECcCCC
Q 006427 446 ----------------REMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLT-VLDMSFNK 505 (645)
Q Consensus 446 ----------------~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~-~LdLS~N~ 505 (645)
..+++|+.|+|++|.++.||.. |.+|.+|+.|+|.+| ++.+ ..|..|.+|+ .|+|.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 0278999999999999999876 889999999999998 7776 4589999999 999988 7
Q ss_pred CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
++.+.. ..|.+|++|+.|+|.+|.+.. |+.. .+..+++|+.|..
T Consensus 285 l~~I~~--~aF~~c~~L~~l~l~~n~i~~-I~~~-----aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEF--GAFMGCDNLRYVLATGDKITT-LGDE-----LFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECT--TTTTTCTTEEEEEECSSCCCE-ECTT-----TTCTTCCCCEEEC
T ss_pred ceEEch--hhhhCCccCCEEEeCCCccCc-cchh-----hhcCCcchhhhcc
Confidence 777633 778999999999999999986 4443 3677888887753
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=7.3e-15 Score=142.34 Aligned_cols=134 Identities=29% Similarity=0.407 Sum_probs=106.8
Q ss_pred CCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCccccccCcCc
Q 006427 394 GLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGHGLS 469 (645)
Q Consensus 394 ~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~ 469 (645)
.|+.+| .+..+++|++|+|++|.|+.++ .+. ++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+| .+.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 455555 5677888888888888888876 333 788888888888888765 455688999999999999887 678
Q ss_pred CCCCCcEEEccCCCCCCcc---cccCCCCCCEEECcCCCCCCccchh----------HhhhcCCCCcEEEccCCCCCc
Q 006427 470 NCTLIKELYLAGNKISDIE---GLHRLLKLTVLDMSFNKITTTKALG----------QLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 470 ~L~sL~~L~Ls~N~Ls~l~---~l~~L~~L~~LdLS~N~Ls~~~~LP----------~~l~~L~sL~~LdLs~N~L~g 534 (645)
.+++|++|+|++|.|+.++ .+..+++|++|+|++|.+++. +| ..+..+++|+.|| +|+++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~--~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND--YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH--HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc--cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8889999999999998863 588899999999999988764 22 2478999999987 777764
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=6.2e-12 Score=119.53 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=63.8
Q ss_pred CCEEecCCCCCCCCcC-CCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCC
Q 006427 429 LHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFN 504 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N 504 (645)
.+.|++++|.|+.+|. + .+.|++|+|++|.|+.++. .|..+++|++|+|++|+|+.++ .|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3445555555554442 2 2455556666666655532 3556666666666666666652 2566677777777777
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCCCCcCCC
Q 006427 505 KITTTKALGQLVANYQSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP 537 (645)
+|+++ .+..+..+++|+.|+|++|++.+.++
T Consensus 89 ~l~~~--~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSI--PRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCC--CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEe--CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77764 23456777888888888888877654
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7.3e-12 Score=119.74 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=64.5
Q ss_pred CEEecCCCCCCCCcC-CCCCCCCcEEEccCCcccccc-CcCcCCCCCcEEEccCCCCCCcc--cccCCCCCCEEECcCCC
Q 006427 430 HTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISDIE--GLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 430 ~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~Ls~l~--~l~~L~~L~~LdLS~N~ 505 (645)
+.+++++|.|+.+|. + .++|++|+|++|.|+.++ ..|..+++|++|+|++|+|++++ .|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344444444444432 2 145555555555555443 23555566666666666665552 24566677777777777
Q ss_pred CCCccchhHhhhcCCCCcEEEccCCCCCcCCC-hhHHHHHHhcC
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGNPIQSNIS-DDQLRKAVCSL 548 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP-~~~l~~~vl~~ 548 (645)
|+++ .+..+..+++|+.|+|++|+|.+.++ ...++.++...
T Consensus 93 l~~l--~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 93 LKSI--PRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp CCCC--CTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred ccee--CHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 7664 22446777788888888888877554 22344444333
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=9.7e-12 Score=118.17 Aligned_cols=102 Identities=26% Similarity=0.365 Sum_probs=75.6
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCC
Q 006427 407 LRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNK 483 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~ 483 (645)
.+.|++++|.|+.+|... +++|++|+|++|.|++++ .|..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456677777776666443 367777777777777763 277788888888888888877765 5778888888888888
Q ss_pred CCCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 484 ISDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 484 Ls~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
|+.++ .|..+++|++|+|++|.++..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88772 377888888888888888753
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=117.59 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=66.5
Q ss_pred CEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCC
Q 006427 408 RSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKI 484 (645)
Q Consensus 408 ~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~L 484 (645)
+.+++++|.++.+|... +++|++|+|++|.|++++ .|..+++|++|+|++|+|+.+|.. |..+++|++|+|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 45566666665555432 356666666666666652 266677777777777777777655 46777777777777777
Q ss_pred CCcc--cccCCCCCCEEECcCCCCCCc
Q 006427 485 SDIE--GLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 485 s~l~--~l~~L~~L~~LdLS~N~Ls~~ 509 (645)
+.++ .|..+++|++|+|++|.|...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7762 266777777777777777653
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=6.4e-11 Score=123.66 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=46.5
Q ss_pred EEccCC-cCCCCCCCCCC--CCCCEEecCC-CCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCC
Q 006427 410 VNLSNN-FIVHIPTGSMP--KGLHTLNLSR-NKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGN 482 (645)
Q Consensus 410 LdLs~N-~Lt~ip~~~~~--~sL~~LdLs~-N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N 482 (645)
++++++ .|+.+|. +. .+|+.|+|++ |.|+.++. |..|++|+.|+|++|+|+.+++. |.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5555554 22 4455555553 55555432 55555555555555555544432 455555555555555
Q ss_pred CCCCcc-c-ccCCCCCCEEECcCCCCC
Q 006427 483 KISDIE-G-LHRLLKLTVLDMSFNKIT 507 (645)
Q Consensus 483 ~Ls~l~-~-l~~L~~L~~LdLS~N~Ls 507 (645)
+|++++ . +..+. |+.|+|.+|.|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555541 1 22222 555555555544
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=2.8e-11 Score=134.58 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCC--c-CCCCCCCCcEEEccCCccc--cccCcCcCCCCC
Q 006427 401 ISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTI--E-GLREMTRLRVLDLSYNRIF--RIGHGLSNCTLI 474 (645)
Q Consensus 401 L~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~l--p-~L~~L~sL~~LdLS~N~Ls--~LP~~l~~L~sL 474 (645)
+..+++|+.|+++++....++... ..++|++|+|++|.++.. . .+..+++|+.|+|+ |.+. .++..+..+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 445556666666554433333221 126788888888886642 1 25677788888887 4444 343334567778
Q ss_pred cEEEccC-----------CCCCCc--cc-ccCCCCCCEEECcCCCCCCccchhHhhhc-CCCCcEEEcc----CCCCCcC
Q 006427 475 KELYLAG-----------NKISDI--EG-LHRLLKLTVLDMSFNKITTTKALGQLVAN-YQSLLALNLL----GNPIQSN 535 (645)
Q Consensus 475 ~~L~Ls~-----------N~Ls~l--~~-l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~-L~sL~~LdLs----~N~L~g~ 535 (645)
++|+|++ |.+++. .. +..+++|++|+|+.|.+++. .+..+.. +++|+.|+|+ .|.+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~~L~~L~l~~~~~~n~l~~- 421 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE--SLESIGTYLKNLCDFRLVLLDREERITD- 421 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH--HHHHHHHHCCSCCEEEEEECSCCSCCSS-
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH--HHHHHHhhCCCCcEEEEeecCCCccccC-
Confidence 8888883 455542 22 34567788888877777653 2333443 7777777775 556655
Q ss_pred CChhHHHHHHhcCCCCCceecc
Q 006427 536 ISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 536 iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
.|.+.-...++..+++|++|+.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEE
T ss_pred chHHHHHHHHHHhCCCCCEEEE
Confidence 2222112223444666666665
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=1.9e-11 Score=135.94 Aligned_cols=170 Identities=18% Similarity=0.106 Sum_probs=101.7
Q ss_pred hcccCCCEEecCCccccccc-----hhhccCCCccEEEecCCCCCcCC------CCCCCCCCCEEEccCCcCCCCCCCCC
Q 006427 357 AHLTRRSEINLSEEILHANS-----VIRSLNSSSAVAHIAGIGLKAIP------TISHFSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~-----~l~~L~~~L~~L~Ls~N~Lt~IP------sL~~L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
..+++|+.|+|++|.+.+.. .+..-.++|+.|+|++|.++.+. .+..+++|+.|+|++|.+.+++....
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 46778888888888765432 12222377888888888886433 14567888888888887766542111
Q ss_pred -CCCCCEEecCCCCCC-C----CcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc---ccccCCCCC
Q 006427 426 -PKGLHTLNLSRNKIN-T----IEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLKL 496 (645)
Q Consensus 426 -~~sL~~LdLs~N~Ls-~----lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L 496 (645)
.++|+.|+++.+... . ...+..+++|+.|+++++....+|..+..+++|++|+|++|.+++. ..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 156777777643221 1 1235566667777776665556665566667777777777765443 224566666
Q ss_pred CEEECcCCCCCCccchhHhhhcCCCCcEEEcc
Q 006427 497 TVLDMSFNKITTTKALGQLVANYQSLLALNLL 528 (645)
Q Consensus 497 ~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs 528 (645)
+.|+|+ |.+... .++..+..+++|+.|+|+
T Consensus 321 ~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 321 EVLETR-NVIGDR-GLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEE
T ss_pred CEEecc-CccCHH-HHHHHHHhCCCCCEEEee
Confidence 666666 333321 244444556666666666
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=1.4e-10 Score=120.87 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=128.2
Q ss_pred ccCCCEEecCCccccccchhhccC-CCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCc----CCCCCCCCC------
Q 006427 359 LTRRSEINLSEEILHANSVIRSLN-SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNF----IVHIPTGSM------ 425 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l~~L~-~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~----Lt~ip~~~~------ 425 (645)
+.+|+.++|+. .+..+..-.... ++|+.|+|.+|.+..|+ .|..+.++..|.+..+. ...+....|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88999999988 565544433322 78999999999988887 47777777766665521 112222212
Q ss_pred ----------------------------------------------CCCCCEEecCCCCCCCCcC--CCCCCCCcEEEcc
Q 006427 426 ----------------------------------------------PKGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457 (645)
Q Consensus 426 ----------------------------------------------~~sL~~LdLs~N~Ls~lp~--L~~L~sL~~LdLS 457 (645)
+++|+.|+|++|.++.++. |.++.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4689999999999998864 9999999999999
Q ss_pred CCccccccCc-CcCCCCCc-EEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEc
Q 006427 458 YNRIFRIGHG-LSNCTLIK-ELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNL 527 (645)
Q Consensus 458 ~N~Ls~LP~~-l~~L~sL~-~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdL 527 (645)
+| ++.|+.. |.+|.+|+ .|.|.+ .++.+ ..|..|.+|+.|+|+.|.++.+.. ..|.++++|+.|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~--~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD--ELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT--TTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch--hhhcCCcchhhhcc
Confidence 98 8889876 89999999 999998 77777 569999999999999999998743 68999999999874
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=2.6e-12 Score=137.77 Aligned_cols=156 Identities=23% Similarity=0.258 Sum_probs=111.8
Q ss_pred hccCCCccEEEecCCCCCcCC--C----CC-CCCCCCEEEccCCcCCCCCCCCCC---CCCCEEecCCCCCCCC--cC--
Q 006427 379 RSLNSSSAVAHIAGIGLKAIP--T----IS-HFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTI--EG-- 444 (645)
Q Consensus 379 ~~L~~~L~~L~Ls~N~Lt~IP--s----L~-~L~~L~~LdLs~N~Lt~ip~~~~~---~sL~~LdLs~N~Ls~l--p~-- 444 (645)
....+.|+.|+|++|.|+... . +. ...+|+.|+|++|.|+......+. .+|+.|+|++|.|+.. ..
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 334467788888888887432 1 22 336888888888888643222222 5788899999988753 11
Q ss_pred --C-CCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCCCCCc------ccccCCCCCCEEECcCCCCCCc-
Q 006427 445 --L-REMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNKISDI------EGLHRLLKLTVLDMSFNKITTT- 509 (645)
Q Consensus 445 --L-~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~Ls~l------~~l~~L~~L~~LdLS~N~Ls~~- 509 (645)
+ ...+.|+.|+|++|.|+. ++..+..+++|++|+|++|.|++. ..+..+++|+.|+|++|.|+..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 2 346789999999998873 444456788899999999998763 3466777899999999998853
Q ss_pred -cchhHhhhcCCCCcEEEccCCCCCc
Q 006427 510 -KALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 510 -~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
..+...+..+++|++|+|++|.|+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2355667778899999999998865
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=1.8e-10 Score=120.33 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=80.1
Q ss_pred EEEecCC-CCCcCCCCCCCCCCCEEEccC-CcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCc
Q 006427 387 VAHIAGI-GLKAIPTISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNR 460 (645)
Q Consensus 387 ~L~Ls~N-~Lt~IPsL~~L~~L~~LdLs~-N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~ 460 (645)
.++++++ +|+.||.|..+++|+.|+|++ |.|+.+++..|. ++|+.|+|++|+|++++ .|..|++|+.|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4678887 888888888888888888885 888888876554 78888888888888874 37888889999999998
Q ss_pred cccccCcCcCCCCCcEEEccCCCCCCc
Q 006427 461 IFRIGHGLSNCTLIKELYLAGNKISDI 487 (645)
Q Consensus 461 Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l 487 (645)
|+.+|..+.....|+.|+|.+|.|...
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccCC
Confidence 888887644333488999998888753
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=5.3e-11 Score=132.13 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=79.3
Q ss_pred cccCCCEEecCCc-cccc--cchhhccCCCccEEEecCCCCCc-----CCC-CCCCCCCCEEEccCCcCCCCCCCCC---
Q 006427 358 HLTRRSEINLSEE-ILHA--NSVIRSLNSSSAVAHIAGIGLKA-----IPT-ISHFSSLRSVNLSNNFIVHIPTGSM--- 425 (645)
Q Consensus 358 ~L~~L~~LdLS~n-~l~~--~~~l~~L~~~L~~L~Ls~N~Lt~-----IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~--- 425 (645)
.+++|+.|+|+++ .+.. ...+..-.++|++|+|++|.++. ++. ...+++|+.|+|++|. ..+....+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence 4566667766665 3332 11222223566677776666543 221 2355666777776665 21111111
Q ss_pred ---CCCCCEEecCCC-CCCCCcC-CCCCCCCcEEEccCCc-------cc------------------------cccCcCc
Q 006427 426 ---PKGLHTLNLSRN-KINTIEG-LREMTRLRVLDLSYNR-------IF------------------------RIGHGLS 469 (645)
Q Consensus 426 ---~~sL~~LdLs~N-~Ls~lp~-L~~L~sL~~LdLS~N~-------Ls------------------------~LP~~l~ 469 (645)
.++|++|+|++| .+.+++. +..+++|+.|+++.+. +. .++..+.
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 256677777666 2223322 3445555555543321 11 1222222
Q ss_pred CCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEc
Q 006427 470 NCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNL 527 (645)
Q Consensus 470 ~L~sL~~L~Ls~N~Ls~l---~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdL 527 (645)
.+++|++|+|++|.+++. ..+..+++|+.|+|++| +.. ..++.....+++|+.|+|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEE
Confidence 345566666666654432 12345556666666655 321 123333344566666666
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=1.3e-09 Score=117.99 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=142.4
Q ss_pred CCCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCC
Q 006427 348 TGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 348 l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
+.......+.++.+|+.++|+.|.+..+..-......|+.+.|.. .++.|+ .|..|++|+.|+|..| ++.|+..+|
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 344445678888999999999888876655444457899999984 488887 6889999999999875 788888877
Q ss_pred C-CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccc-----cccCc-CcCCCCCcEEEccCCCCCCc--ccccCCC
Q 006427 426 P-KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIF-----RIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLL 494 (645)
Q Consensus 426 ~-~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls-----~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~ 494 (645)
. .+|+.+.| .+.++.++ .|.+|++|+.|+|.+|.+. .|+.. |.+|++|+.|.|. +.++.+ ..|..|.
T Consensus 246 ~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 246 RESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNR 323 (401)
T ss_dssp TTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred ccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCC
Confidence 6 78999999 45677664 4889999999999988776 57655 8899999999998 457776 5688899
Q ss_pred CCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCc
Q 006427 495 KLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 495 ~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
+|+.|.|..| ++.+.. ..|.++ +|+.|++.+|.+..
T Consensus 324 ~L~~l~lp~~-l~~I~~--~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINF--SAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SCCEEEECTT-CCEECT--TSSSSS-CCCEEEECCSSCCB
T ss_pred CccEEEECcc-ccEEcH--HhCCCC-CCCEEEEcCCCCcc
Confidence 9999999655 766533 678888 99999999998765
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=2.4e-10 Score=126.92 Aligned_cols=128 Identities=20% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCCEEecCCCCCCCC--cC-CCCCCCCcEEEccCCccc--cccCcCcCCCCCcEEEccC---------CCCCCc--ccc
Q 006427 427 KGLHTLNLSRNKINTI--EG-LREMTRLRVLDLSYNRIF--RIGHGLSNCTLIKELYLAG---------NKISDI--EGL 490 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~l--p~-L~~L~sL~~LdLS~N~Ls--~LP~~l~~L~sL~~L~Ls~---------N~Ls~l--~~l 490 (645)
++|+.|+|++|.++.. .. +..+++|+.|+|++| ++ .++.....+++|++|+|.+ |.+++. ..+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 6788888888886642 22 457788888888877 44 2322233567777777733 344332 122
Q ss_pred -cCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEcc--C----CCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 491 -HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLL--G----NPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 491 -~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs--~----N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
..+++|+.|.+..|.+++. .+......+++|+.|+|+ + |.++. .|.+.-...++..+++|+.|+.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNA-ALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHH-HHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEEC
T ss_pred HHhchhHHHHHHhcCCcCHH-HHHHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEee
Confidence 2356677777766666653 122222356777777777 3 34443 2221111222445566666655
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.02 E-value=1.2e-11 Score=132.57 Aligned_cols=173 Identities=19% Similarity=0.235 Sum_probs=124.0
Q ss_pred ccCCCEEecCCccccccch--hhcc----CCCccEEEecCCCCCcC--CCC-CCCCCCCEEEccCCcCCCCCCCCC----
Q 006427 359 LTRRSEINLSEEILHANSV--IRSL----NSSSAVAHIAGIGLKAI--PTI-SHFSSLRSVNLSNNFIVHIPTGSM---- 425 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~--l~~L----~~~L~~L~Ls~N~Lt~I--PsL-~~L~~L~~LdLs~N~Lt~ip~~~~---- 425 (645)
+..|+.|+|++|.+..... +... ..+|+.|+|++|.|+.. ..+ ..+++|+.|+|++|.|+......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999875322 2221 26899999999999743 233 346789999999999975432221
Q ss_pred ---CCCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCCCCCc----
Q 006427 426 ---PKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNKISDI---- 487 (645)
Q Consensus 426 ---~~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~Ls~l---- 487 (645)
.++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+. |+..+..+++|+.|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 26899999999999752 235778999999999999983 345577788999999999999864
Q ss_pred --ccccCCCCCCEEECcCCCCCCccchhHhhhcCC-----CCcEEE--ccCCCCC
Q 006427 488 --EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQ-----SLLALN--LLGNPIQ 533 (645)
Q Consensus 488 --~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~-----sL~~Ld--Ls~N~L~ 533 (645)
..+..+++|++|+|++|.|+... ...+..+. .|+.+. +.+|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g--~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG--RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH--HHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH--HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 33556789999999999998642 23343332 166666 6666664
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=9.4e-09 Score=111.22 Aligned_cols=193 Identities=15% Similarity=0.214 Sum_probs=146.4
Q ss_pred CCCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC
Q 006427 349 GKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP 426 (645)
Q Consensus 349 ~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~ 426 (645)
.......+.+ .+|+.+.|..+ +..+..-.....+|+.+.|.. .++.|+ .|..|.+|+.++|.+|.++.++...|.
T Consensus 125 ~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 125 KSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp CEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred CEehHhhccc-CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 3333455655 37899999877 554444444446799999985 788887 689999999999999999999988776
Q ss_pred -CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEE
Q 006427 427 -KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLD 500 (645)
Q Consensus 427 -~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~Ld 500 (645)
.+|+.+.|..+ ++.++ .|.++.+|+.|+|..| ++.|+.. |.+ .+|+.+.| .|.++.+ ..|..|.+|+.|.
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 89999999854 77664 4889999999999875 7777766 555 78999999 4556666 4688999999999
Q ss_pred CcCCCCC-----CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 501 MSFNKIT-----TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 501 LS~N~Ls-----~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
|.+|.+. .+. ...|..|++|+.|+|.. .+.. |+.. .+..|.+|+.|++
T Consensus 278 l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~~-~i~~-I~~~-----aF~~c~~L~~l~l 330 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIH--PYCLEGCPKLARFEIPE-SIRI-LGQG-----LLGGNRKVTQLTI 330 (401)
T ss_dssp EESSCCCCCTTCEEC--TTTTTTCTTCCEECCCT-TCCE-ECTT-----TTTTCCSCCEEEE
T ss_pred eCCccccCCcccEEC--HHHhhCCccCCeEEeCC-ceEE-Ehhh-----hhcCCCCccEEEE
Confidence 9888775 332 36788999999999984 4543 4443 3666788888775
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=4.2e-09 Score=108.48 Aligned_cols=116 Identities=23% Similarity=0.352 Sum_probs=87.4
Q ss_pred CCCCCCCcE--EEccCCccccccCc----CcCCCCCcEEEccCCCCCCccc----ccCCCCCCEEECcCCCCCCccchhH
Q 006427 445 LREMTRLRV--LDLSYNRIFRIGHG----LSNCTLIKELYLAGNKISDIEG----LHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 445 L~~L~sL~~--LdLS~N~Ls~LP~~----l~~L~sL~~L~Ls~N~Ls~l~~----l~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
|...+.|.. ++++.|.+..++.. ..++++|+.|+|++|.|+++.. +..+++|+.|+|++|+|+++..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~- 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD- 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-
Confidence 344444554 66777765544322 2467889999999999988743 347899999999999999874432
Q ss_pred hhhcCCCCcEEEccCCCCCcCCCh-hHHHHHHhcCCCCCceecccCCCh
Q 006427 515 LVANYQSLLALNLLGNPIQSNISD-DQLRKAVCSLLPKLVYLNKQPIKP 562 (645)
Q Consensus 515 ~l~~L~sL~~LdLs~N~L~g~iP~-~~l~~~vl~~L~~L~~Ld~~~Is~ 562 (645)
.+..+ +|+.|+|++|++.+.+|. ..|+..++..+|+|+.||...|++
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 23444 999999999999988874 468888999999999999988764
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=6.4e-08 Score=103.57 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCC--CcCC--CCCCCCcEEEccC--Cc------cccccCcC--
Q 006427 403 HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGL--REMTRLRVLDLSY--NR------IFRIGHGL-- 468 (645)
Q Consensus 403 ~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~--lp~L--~~L~sL~~LdLS~--N~------Ls~LP~~l-- 468 (645)
.+++|+.|+|++|.-..+++ ...++|+.|+|..|.+.. +..+ ..+++|+.|+|+. |. +..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 34555555555542112222 112566666666666543 1122 2566677776642 11 21222222
Q ss_pred cCCCCCcEEEccCCCCCCc-----ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCc
Q 006427 469 SNCTLIKELYLAGNKISDI-----EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 469 ~~L~sL~~L~Ls~N~Ls~l-----~~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
..+++|++|+|.+|.+.+. .....+++|++|+|+.|.|.+. ..++..+..+++|+.|+|++|.|+.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2467788888877777642 1123467788888888877653 2234444567788888888877653
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=1.2e-07 Score=101.50 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=107.7
Q ss_pred hhhhcccCCCEEecCCcccc----------ccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCC
Q 006427 354 RSTAHLTRRSEINLSEEILH----------ANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG 423 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~----------~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~ 423 (645)
.++..+++|+.|.|...... .+..+....++|+.|.|++|.--.++.+. +++|+.|+|..|.++.-...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHH
Confidence 34567788999988665332 12222233478899999887322444443 78899999988877531111
Q ss_pred ----CCCCCCCEEecCC--CC------CCCCc-CC--CCCCCCcEEEccCCcccc-ccCcC---cCCCCCcEEEccCCCC
Q 006427 424 ----SMPKGLHTLNLSR--NK------INTIE-GL--REMTRLRVLDLSYNRIFR-IGHGL---SNCTLIKELYLAGNKI 484 (645)
Q Consensus 424 ----~~~~sL~~LdLs~--N~------Ls~lp-~L--~~L~sL~~LdLS~N~Ls~-LP~~l---~~L~sL~~L~Ls~N~L 484 (645)
.-.++|+.|+|+. |. +..+. .+ ..+++|++|+|.+|.+.. .+..+ ..+++|++|+|+.|.|
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 1236888888753 22 11121 12 347889999998888862 22222 3567899999999888
Q ss_pred CCc------ccccCCCCCCEEECcCCCCCCccchhHhhhc-CCCCcEEEccCCC
Q 006427 485 SDI------EGLHRLLKLTVLDMSFNKITTTKALGQLVAN-YQSLLALNLLGNP 531 (645)
Q Consensus 485 s~l------~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~-L~sL~~LdLs~N~ 531 (645)
++. ..+..+++|+.|+|++|.|+.. .-..+.. + ...++++.|+
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~--~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDE--MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHH--HHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHH--HHHHHHHHc--CCEEEecCCc
Confidence 763 2345678899999998888753 2233333 3 4567888776
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.1e-07 Score=91.69 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=41.3
Q ss_pred CCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCCCCCc------ccccCCCCCCEEEC--cCCCCCCc--c
Q 006427 446 REMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNKISDI------EGLHRLLKLTVLDM--SFNKITTT--K 510 (645)
Q Consensus 446 ~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~Ls~l------~~l~~L~~L~~LdL--S~N~Ls~~--~ 510 (645)
...+.|++|+|++|.|.. |...+...+.|++|+|++|.|++. ..+.....|++|+| ++|.|... .
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 334455555555555541 222233344555555555555441 23444445555555 45555432 1
Q ss_pred chhHhhhcCCCCcEEEccCCCC
Q 006427 511 ALGQLVANYQSLLALNLLGNPI 532 (645)
Q Consensus 511 ~LP~~l~~L~sL~~LdLs~N~L 532 (645)
.+...+...++|+.|+|++|.+
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEeccCCCC
Confidence 2334444455555555555554
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=1.6e-07 Score=90.38 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEc--cCCCCCCc------
Q 006427 427 KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYL--AGNKISDI------ 487 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~L--s~N~Ls~l------ 487 (645)
++|++|+|++|.|..- ..+...+.|++|+|++|.|+. |...+...+.|++|+| ++|.|+..
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4566666666665531 124445677777777777762 4445666777888888 77877652
Q ss_pred ccccCCCCCCEEECcCCCCCC
Q 006427 488 EGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 488 ~~l~~L~~L~~LdLS~N~Ls~ 508 (645)
..+...+.|+.|+|++|.|..
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHhCCCcCEEeccCCCCCh
Confidence 345566788888888887754
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=4.1e-06 Score=86.16 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=57.8
Q ss_pred CCCCCCcEEEccCCcccccc---CcCcCCCCCcEEEccCCCCCCcccccCCC--CCCEEECcCCCCCCc-c----chhHh
Q 006427 446 REMTRLRVLDLSYNRIFRIG---HGLSNCTLIKELYLAGNKISDIEGLHRLL--KLTVLDMSFNKITTT-K----ALGQL 515 (645)
Q Consensus 446 ~~L~sL~~LdLS~N~Ls~LP---~~l~~L~sL~~L~Ls~N~Ls~l~~l~~L~--~L~~LdLS~N~Ls~~-~----~LP~~ 515 (645)
..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|+++..+..+. +|+.|+|++|.|.+. + -....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34677888888888877543 34567888888888888888774444444 899999999998752 1 01245
Q ss_pred hhcCCCCcEEE
Q 006427 516 VANYQSLLALN 526 (645)
Q Consensus 516 l~~L~sL~~Ld 526 (645)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 78899999886
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.72 E-value=0.00037 Score=74.08 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=106.8
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CC
Q 006427 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KG 428 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~s 428 (645)
...+.+...|+.+.+..+... ..........|+.+.+.. .++.+. .+..+..|+.+.+..+. ..+....|. ..
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSG 277 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTT
T ss_pred chhhccccccceeecCCCceE-eehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCc-ceeeccccccccc
Confidence 345556666666666655332 112222235677777653 345554 46777888888887653 344444443 66
Q ss_pred CCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCC
Q 006427 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~ 505 (645)
|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.|+.. |.+|.+|+.+.|..+ ++.+ ..|..|.+|+.+.|..|
T Consensus 278 l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 278 LKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp CCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred cceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 7777665543321 23667788888888654 6677654 778888888888644 6555 45778888888888766
Q ss_pred CCCccchhHhhhcCCCCcEEEccCC
Q 006427 506 ITTTKALGQLVANYQSLLALNLLGN 530 (645)
Q Consensus 506 Ls~~~~LP~~l~~L~sL~~LdLs~N 530 (645)
++.+.. ..|.+|.+|+.++|..+
T Consensus 354 l~~I~~--~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGA--NAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECT--TTBTTCTTCCEEEEEGG
T ss_pred ccEehH--HHhhCCCCCCEEEECCC
Confidence 665533 56788888888888654
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=0.00028 Score=74.93 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCC-CcCCCCCCCCcEEEccCCccccccC-cCcCCCCCcEEEc
Q 006427 404 FSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEGLREMTRLRVLDLSYNRIFRIGH-GLSNCTLIKELYL 479 (645)
Q Consensus 404 L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~-lp~L~~L~sL~~LdLS~N~Ls~LP~-~l~~L~sL~~L~L 479 (645)
...|+.+.+.. .++.+....+. ..|+.+.+..+...- ...+..+..|+.+.+..+. ++. .+..+.+|+.+.+
T Consensus 229 ~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEE
T ss_pred cCCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccccccccc
Confidence 34566665543 23444444333 566777766553331 1236667777777666554 333 3677888999988
Q ss_pred cCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 480 AGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 480 s~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
..+ ++.+ ..|..+.+|+.++|..+ ++.+.. ..|.+|.+|+.+.|..| ++. |+.. .+..+.+|+.++.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~c~~L~~i~lp~~-l~~-I~~~-----aF~~C~~L~~i~l 373 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK--RSFRGCTSLSNINFPLS-LRK-IGAN-----AFQGCINLKKVEL 373 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT--TTTTTCTTCCEECCCTT-CCE-ECTT-----TBTTCTTCCEEEE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH--HhccCCCCCCEEEECcc-ccE-ehHH-----HhhCCCCCCEEEE
Confidence 765 5555 45888899999999754 666533 67889999999999877 543 4443 3667888888875
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.0016 Score=69.05 Aligned_cols=101 Identities=16% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCC
Q 006427 445 LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQS 521 (645)
Q Consensus 445 L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~s 521 (645)
|..+..|+.+.+..+.. .|... |.++..|+.+.+. +.++.+ ..|..|.+|+.+.|..+ ++.+.. ..|.+|.+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD--DAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTT
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH--hHhhCCCC
Confidence 56666777777654432 34333 6666777777774 344444 34666677777777543 444422 45666777
Q ss_pred CcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006427 522 LLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 522 L~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
|+.+.|..+ ++. |+.. .+..+.+|+.++.
T Consensus 336 L~~i~ip~s-v~~-I~~~-----aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 336 LERIAIPSS-VTK-IPES-----AFSNCTALNNIEY 364 (394)
T ss_dssp CCEEEECTT-CCB-CCGG-----GGTTCTTCCEEEE
T ss_pred CCEEEECcc-cCE-EhHh-----HhhCCCCCCEEEE
Confidence 777777544 332 4433 2555666666654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.0017 Score=68.99 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=24.8
Q ss_pred CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccC
Q 006427 468 LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLG 529 (645)
Q Consensus 468 l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~ 529 (645)
|..+..|+.+.+..+.. .+ ..|..+.+|+.+.+. +.++.+.. ..|.++.+|+.++|..
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~--~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPE--SVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECT--TTTTTCTTCCEEECCT
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCc--eeecCCCCcCEEEeCC
Confidence 34444555555443322 11 234444555555553 23333322 3344455555555543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.42 E-value=0.00092 Score=70.19 Aligned_cols=98 Identities=14% Similarity=0.237 Sum_probs=41.4
Q ss_pred CCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCc
Q 006427 401 ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIK 475 (645)
Q Consensus 401 L~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~ 475 (645)
+..+..|+.+.+..+ ++.|....|. .+|+.+.+..+ +..++ .|.++.+|+.+.+.++.++.|+.. |.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 444444555554433 4444433332 34444444322 22221 244444455555444444444433 44444444
Q ss_pred EEEccCCCCCCc--ccccCCCCCCEEEC
Q 006427 476 ELYLAGNKISDI--EGLHRLLKLTVLDM 501 (645)
Q Consensus 476 ~L~Ls~N~Ls~l--~~l~~L~~L~~LdL 501 (645)
.+.|..+ ++.+ ..|.+|.+|+.+.|
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4444322 3333 23444444444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=0.00013 Score=70.43 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=54.4
Q ss_pred CCcEEEccCCcccccc-CcCcCCCCCcEEEccCCC-CCCc--ccccCC----CCCCEEECcCCC-CCCccchhHhhhcCC
Q 006427 450 RLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNK-ISDI--EGLHRL----LKLTVLDMSFNK-ITTTKALGQLVANYQ 520 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~-Ls~l--~~l~~L----~~L~~LdLS~N~-Ls~~~~LP~~l~~L~ 520 (645)
.|+.|||+++.|+... ..+..|++|++|+|++|. |++- ..+..+ ++|++|+|++|. |++.. + ..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-I-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-H-HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-H-HHHhcCC
Confidence 4566666666555211 124566666677776663 5542 334443 357777777764 65432 2 3456777
Q ss_pred CCcEEEccCCCCCcCCChhHHHHHHhcCCCCCc
Q 006427 521 SLLALNLLGNPIQSNISDDQLRKAVCSLLPKLV 553 (645)
Q Consensus 521 sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~ 553 (645)
+|+.|+|++++-... .......+-..+|+++
T Consensus 140 ~L~~L~L~~c~~Itd--~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE--KEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCC--HHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCc--hHHHHHHHHHHCCCcE
Confidence 888888887753221 1112233344566665
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=0.00018 Score=70.72 Aligned_cols=63 Identities=25% Similarity=0.216 Sum_probs=29.6
Q ss_pred CcCCCCCcEEEccCCCCCCc------ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCC
Q 006427 468 LSNCTLIKELYLAGNKISDI------EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGN 530 (645)
Q Consensus 468 l~~L~sL~~L~Ls~N~Ls~l------~~l~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N 530 (645)
+...+.|+.|+|++|.|.+. ..+..-..|+.|+|+.|.|... ..+...+...+.|+.|+|++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33444555555555555432 2233344555555555555432 223334444455555555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.0022 Score=67.32 Aligned_cols=125 Identities=15% Similarity=0.286 Sum_probs=84.5
Q ss_pred CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCC
Q 006427 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLI 474 (645)
Q Consensus 400 sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL 474 (645)
.+..+.+|+.+.+..+ +..+....|. ..|+.+.+..+ ++.+. .+.++..|+.+.+..+ +..++.. |..|.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3556677777777544 5555555543 67888887665 55543 3677778888887543 6666654 7777888
Q ss_pred cEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCC
Q 006427 475 KELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGN 530 (645)
Q Consensus 475 ~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N 530 (645)
+.+.+.++.++.+ ..|..|.+|+.+.|..+ ++.+.. ..|.+|.+|+.+.|..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc
Confidence 8888887777766 45777888888888644 555433 56777788887777544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00098 Score=65.48 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=81.0
Q ss_pred CCCCEEecCCC-CCCCC------cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCCCCCc------c
Q 006427 427 KGLHTLNLSRN-KINTI------EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNKISDI------E 488 (645)
Q Consensus 427 ~sL~~LdLs~N-~Ls~l------p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~Ls~l------~ 488 (645)
+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|.. |...+...+.|+.|+|++|.|++. .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67999999986 88741 346777899999999999982 333456678999999999999863 4
Q ss_pred cccCCCCCCEEECcCCC---CCCc--cchhHhhhcCCCCcEEEccCCCC
Q 006427 489 GLHRLLKLTVLDMSFNK---ITTT--KALGQLVANYQSLLALNLLGNPI 532 (645)
Q Consensus 489 ~l~~L~~L~~LdLS~N~---Ls~~--~~LP~~l~~L~sL~~LdLs~N~L 532 (645)
.+..-..|+.|+|++|. |... ..+...+...+.|..|+|+.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 57777789999998763 3321 23556778888999999987754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.0023 Score=58.21 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=46.7
Q ss_pred EEEccCCCCC--CcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcC
Q 006427 476 ELYLAGNKIS--DIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSL 548 (645)
Q Consensus 476 ~L~Ls~N~Ls--~l~~l~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~ 548 (645)
.++.+++.|+ .++. .-..+|+.|+|++|+|+.++. ..|..+++|+.|+|.+|++.+.+....+..++...
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT--TTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh--hhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 5556666665 4431 112457778888888777532 56778888888999999998877666666665443
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.89 E-value=0.00074 Score=65.21 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=66.7
Q ss_pred cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCC-CCCccchhHhhhcC----CCCcEEEccCCC-CCc
Q 006427 463 RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNK-ITTTKALGQLVANY----QSLLALNLLGNP-IQS 534 (645)
Q Consensus 463 ~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~l~~L~~L~~LdLS~N~-Ls~~~~LP~~l~~L----~sL~~LdLs~N~-L~g 534 (645)
.+|.....--.|+.|+|+++.|++. ..+..+++|+.|+|++|. |++. .+ ..++.+ ++|+.|+|++|. |+.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CL-ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HH-HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HH-HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 4554433335799999999998764 678899999999999996 6653 22 335554 479999999986 543
Q ss_pred CCChhHHHHHHhcCCCCCceecccCCCh
Q 006427 535 NISDDQLRKAVCSLLPKLVYLNKQPIKP 562 (645)
Q Consensus 535 ~iP~~~l~~~vl~~L~~L~~Ld~~~Is~ 562 (645)
..+. .+..+++|+.|+...+..
T Consensus 130 ----~Gl~--~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 130 ----KGII--ALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp ----HHHH--HGGGCTTCCEEEEESCTT
T ss_pred ----HHHH--HHhcCCCCCEEECCCCCC
Confidence 3333 256789999999876653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0048 Score=56.08 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=16.6
Q ss_pred CcEEEccCCccccccCc-CcCCCCCcEEEccCCCC
Q 006427 451 LRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKI 484 (645)
Q Consensus 451 L~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~L 484 (645)
|+.|+|++|+|+.||.. |..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444433 34445555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.85 E-value=1e+02 Score=26.09 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred CCCCCCCcC--CCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCC
Q 006427 436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGN 482 (645)
Q Consensus 436 ~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N 482 (645)
+..++.+.. |.++.+|+.+.|-.+ ++.|... |.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Done!