BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006428
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/516 (47%), Positives = 322/516 (62%), Gaps = 13/516 (2%)
Query: 135 YESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQK 193
Y+++F+ FG GA ++N E YL ++L D P +G ++ C SWV + K
Sbjct: 95 YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 194 RIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSE 253
RIFF N +YLPS+TP L + R EEL N+RGDG GERK DRIYDYDVYNDLG PD +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 254 LARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYS 313
ARPVLGG PYPRR RTGR DP SE Y+PRDEAF +K F A + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 314 VLHGLVPSLETAIIDT--DLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKG 371
V ++P L A L F F + KL+ GV +P F T +P + +
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVT--LPTNFLSNI---TPIPIIKEL 329
Query: 372 IEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIY 431
G++ L++ P+ M DK W DEEF R+T+AGLNP I+++ E+PL S LD + Y
Sbjct: 330 FRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAY 389
Query: 432 GPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRT 491
G ITKE +E +GG +TVE+AI+ KKLFILD+HD L+PY+ K+ T Y +RT
Sbjct: 390 GDHTCIITKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRT 447
Query: 492 LFFSYPSGTLRPLAIELTRPPMDGKPQW--KQVFTPSWHSTECWLWRLAKAHVLAHDSGY 549
+FF GTL PLAIEL++P G+ +V+ PS E ++W LAKA+V+ +D+ Y
Sbjct: 448 IFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACY 507
Query: 550 HQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGII 609
HQ++SHWL TH EP++IATNR LS +HPI +LL PH+R TM IN+LAR++LVNA GII
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGII 567
Query: 610 ESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
E TF G+YS+E+S+V Y K W F +ALP DL+ R
Sbjct: 568 EKTFLWGRYSLEMSAVIY-KDWVFTDQALPNDLVKR 602
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/610 (43%), Positives = 351/610 (57%), Gaps = 34/610 (5%)
Query: 56 IKAITTFTQKSTQVKAFVTIKPSVGG-------LVSGFVDDVKDMFGKSLLLELVSAELD 108
IK +K+ VT SVGG LV +D + G+S+ L+L+SA
Sbjct: 12 IKGTVVLMRKNVLDVNSVT---SVGGIIGQGLDLVGSTLDTLTAFLGRSVSLQLISATKA 68
Query: 109 PKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLN 164
G K ++G G ++ FE G GA ++N E +L
Sbjct: 69 DANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLV 128
Query: 165 DIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLR 223
+ L D P +G ++ C SW+ + + K RIFF N++YLPS+TP L + R EEL NLR
Sbjct: 129 SLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLR 188
Query: 224 GDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKE-HPYPRRCRTGRPPCETDPA 282
GDG GERK +RIYDYDVYNDLG PD ARPVLGG + PYPRR RTGR P DP
Sbjct: 189 GDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPN 248
Query: 283 SESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFP-----YFT 337
SESR+ Y+PRDEAF +K F L SV ++P L++A DL F F
Sbjct: 249 SESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFD 305
Query: 338 TIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFR 397
+ L++ G+ +P K L P L + G++ L+F P+ + K W
Sbjct: 306 EVHGLYSGGIKLPTDIISKISPL-----PVLKEIFRTDGEQALKFPPPKVIQVSKSAWMT 360
Query: 398 DEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAI 457
DEEF R+ LAG+NP IR + ++P RS LD ++YG S ITKE +E + G +TV+EAI
Sbjct: 361 DEEFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAI 419
Query: 458 KQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELT--RPPMDG 515
+ K+LF+LD+HD ++PY+ ++ T Y +RT+ F GTLRPLAIEL+ P D
Sbjct: 420 QNKRLFLLDHHDPIMPYLRRINA-TSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQ 478
Query: 516 KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLS 575
+ QVF P+ E +W LAKA+V+ +DS YHQLVSHWL TH EP+IIATNR LS
Sbjct: 479 SGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLS 538
Query: 576 AMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDH 635
+HPI +LL PH+R TM IN LAR +LVN GG+IE TF G+YS+E+S+V Y K W F
Sbjct: 539 VVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTD 597
Query: 636 EALPKDLISR 645
+ALP DLI R
Sbjct: 598 QALPADLIKR 607
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/610 (43%), Positives = 349/610 (57%), Gaps = 34/610 (5%)
Query: 56 IKAITTFTQKSTQVKAFVTIKPSVGG-------LVSGFVDDVKDMFGKSLLLELVSAELD 108
IK +K+ VT SVGG LV +D + G+S+ L+L+SA
Sbjct: 12 IKGTVVLMRKNVLDVNSVT---SVGGIIGQGLDLVGSTLDTLTAFLGRSVSLQLISATKA 68
Query: 109 PKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLN 164
G K ++G G ++ FE G GA ++N E +L
Sbjct: 69 DANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLV 128
Query: 165 DIVL-DGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLR 223
+ L D P +G ++ C SW+ + + K RIFF N++YLPS+TP L + R EEL NLR
Sbjct: 129 SLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLR 188
Query: 224 GDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKE-HPYPRRCRTGRPPCETDPA 282
GDG GERK +RIYDYDVYNDLG PD ARPVLGG + PYPRR RTGR P DP
Sbjct: 189 GDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPN 248
Query: 283 SESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFP-----YFT 337
SESR+ Y+PRDEAF +K F L SV ++P L++A DL F F
Sbjct: 249 SESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFD 305
Query: 338 TIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFR 397
+ L++ G+ +P K L P L + G++ L+F P+ + K W
Sbjct: 306 EVHGLYSGGIKLPTDIISKISPL-----PVLKEIFRTDGEQALKFPPPKVIQVSKSAWMT 360
Query: 398 DEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAI 457
DEEF R+ LAG+NP IR + ++P RS LD ++YG S ITKE +E + G +TV+EAI
Sbjct: 361 DEEFAREMLAGVNPNLIRCLKDFPPRSKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAI 419
Query: 458 KQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELT--RPPMDG 515
+ K+LF+LD+HD ++PY+ ++ T Y +RT+ F GTLRPLAIEL+ P D
Sbjct: 420 QNKRLFLLDHHDPIMPYLRRINA-TSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQ 478
Query: 516 KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLS 575
+ QVF P+ E +W LAKA+V+ +DS YHQLVSH L TH EP+IIATNR LS
Sbjct: 479 SGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHXLNTHAVVEPFIIATNRHLS 538
Query: 576 AMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDH 635
+HPI +LL PH+R TM IN LAR + VN GG+IE TF G+YS+E+S+V Y K W F
Sbjct: 539 VVHPIYKLLHPHYRDTMNINGLARLSXVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTD 597
Query: 636 EALPKDLISR 645
+ALP DLI R
Sbjct: 598 QALPADLIKR 607
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/578 (43%), Positives = 334/578 (57%), Gaps = 27/578 (4%)
Query: 82 LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHR-------AGEDKDGHII 134
LV G +D G+++ ++L+SA +G K + + + G +D I
Sbjct: 50 LVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSI 109
Query: 135 YESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQK 193
+ FE SFG GA ++N E +L + L D P +G + C SWV + K+
Sbjct: 110 F---FEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKN 166
Query: 194 RIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSE 253
RIFF N +YLPS TP L + R EE LRGDG G+RK DRIYDYDVYNDLG PD
Sbjct: 167 RIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGD- 225
Query: 254 LARPVLGGKE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLY 312
RP+LGG +PYP R RTGR TDP SE + YVPRDE F +K F +
Sbjct: 226 -PRPILGGCSIYPYPLRVRTGRERTRTDPNSEKPGEV-YVPRDENFGHLKSSDFLTYGIK 283
Query: 313 SVLHGLVPSLETAIID---TDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLV 369
S+ H ++P ++AI T F F + L+ G+ +P + + LP L
Sbjct: 284 SLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPT-----DILSQISPLPALK 338
Query: 370 KGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPE 429
+ G+ VL+F P K DEEF R+ +AG+NP IR + E+P +STLDP
Sbjct: 339 EIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPT 398
Query: 430 IYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGS 489
+YG S ITKE +E +GG+ TVEEA+ ++LFILDY D +PY+ ++ L Y +
Sbjct: 399 LYGDQTSTITKEQLEINMGGV-TVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYAT 457
Query: 490 RTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQ--VFTPSWHSTECWLWRLAKAHVLAHDS 547
RT+ F GTL+PLAIEL++P DG + V P+ + +W LAKAHV+ +DS
Sbjct: 458 RTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDS 517
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
GYHQLVSHWL TH EP+ IATNR LS +HPI +LL PH+R T+ IN LAR++L+NA G
Sbjct: 518 GYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADG 577
Query: 608 IIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
IIE +F PGKYS+E+SS Y K+W F H+ALP DL+ R
Sbjct: 578 IIEKSFLPGKYSIEMSSSVY-KNWVFTHQALPADLVKR 614
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/574 (42%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GI+E+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIVET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GI+E+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGILET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 339/574 (59%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YH+
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHE 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 338/574 (58%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GI E+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIAET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 338/574 (58%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YH
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHA 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GIIE+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/574 (41%), Positives = 338/574 (58%), Gaps = 29/574 (5%)
Query: 87 VDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESKFEVP 142
VD++ G+S+ L+L+SA G K ++G G + FE
Sbjct: 29 VDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWD 88
Query: 143 PSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKS 201
S G GA ++N E +L + L+ N G + C SWV + + K RIFF N +
Sbjct: 89 GSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHT 148
Query: 202 YLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG 261
Y+PS+TP L R EEL +LRG+G GERK +DRIYDYDVYNDLG PD +LARPVLGG
Sbjct: 149 YVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGG 208
Query: 262 KE-HPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQ---LQFSAKTLYSVLHG 317
PYPRR RTGR P TDP +E + + YVPRDE +K L+ K+L ++
Sbjct: 209 SSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQ- 267
Query: 318 LVPSLETA--IIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPR-LVKGIED 374
P+ E+A + T + F F + L+ G+ +P + + TI+P ++K +
Sbjct: 268 --PAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP-------RDVISTIIPLPVIKELYR 318
Query: 375 T-GKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 433
T G+ +L+F P + + W DEEF R+ +AG+NP IR + E+P +S LDP IYG
Sbjct: 319 TDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGD 378
Query: 434 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLF 493
S IT + ++ + G T++EA+ ++LF+LDYHD+ +PYV ++ +L Y +RT+
Sbjct: 379 QSSKITADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTIL 435
Query: 494 FSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQ 551
F GTL+P+AIEL+ P G QV P+ E +W LAKA+V+ +DS YHQ
Sbjct: 436 FLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQ 495
Query: 552 LVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIES 611
L+SHWL TH EP++IAT+R LS +HPI +LL PH+R M INALAR++L+NA GI E+
Sbjct: 496 LMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIGET 555
Query: 612 TFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
TF P KYS+E+SS Y K+W F +ALP DLI R
Sbjct: 556 TFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 514
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 515 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 574
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 575 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
A+HPI +LL H R+T+ IN ARE L+ G+ + + G
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATG 446
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 514
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 515 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 574
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 575 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
A+HPI +LL H R+T+ IN ARE L+ G+ + + G
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATG 446
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W D FG Q L G NP IR TE P + +T E++E + +++E
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELP------------EKLPVTTEMVECSLERQLSLE 291
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 514
+ ++Q +FI+D+ L K L L + + + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 515 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 574
P +F PS + W LAK V + D HQ ++H LRTH +E + IA RQL
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQL 404
Query: 575 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
A+HPI +LL H R+T+ IN ARE L+ G+ + + G
Sbjct: 405 PAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATG 446
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 27/256 (10%)
Query: 394 FWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTV 453
+W D FG Q L G NP IR R PE + + E++EK + T+
Sbjct: 250 YWRDDVWFGSQFLNGSNPEVIR-------RCDKLPENF-----PVKNEMVEKLLDRGYTL 297
Query: 454 EEAIKQKKLFILDYHDLL-LPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPP 512
E+A+K+ +FI DY L +P ++ + + T LF+ + + P+AI+L + P
Sbjct: 298 EKAMKEGLIFITDYKILEGIPTMDTPEDKRYITT--PLGLFYLKNNDDIIPIAIQLYQQP 355
Query: 513 MDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNR 572
+ W TP TE W W +AK + D+ YHQ+++H LR H EP +++ R
Sbjct: 356 GENNSIW----TPL-KDTE-WDWIMAKLWLRCADTQYHQMITHLLRCHLMMEPTAVSSWR 409
Query: 573 QLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWR 632
L ++HP+ +LL PH + M IN L R L+ GG + S G KH+R
Sbjct: 410 NLPSVHPVWKLLYPHTKGIMAINTLGRNDLIPTGGAADKVLSIGGGG---QVTLMQKHYR 466
Query: 633 ---FDHEALPKDLISR 645
FD L KDL R
Sbjct: 467 SVTFDSYDLVKDLRQR 482
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 38/249 (15%)
Query: 384 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 444 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 487
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 488 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 547
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L+ +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGG 439
Query: 608 IIESTFSPG 616
I++ + S G
Sbjct: 440 IVDQSLSLG 448
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 38/249 (15%)
Query: 384 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443
TP DR W D FG Q L G NP + P +T E +
Sbjct: 592 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 635
Query: 444 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 487
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 636 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 695
Query: 488 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 547
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 696 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 749
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L+ +GG
Sbjct: 750 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELIGSGG 809
Query: 608 IIESTFSPG 616
I++ + S G
Sbjct: 810 IVDQSLSLG 818
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 108/249 (43%), Gaps = 38/249 (15%)
Query: 384 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443
TP DR W D FG Q L G NP + P +T E +
Sbjct: 225 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 268
Query: 444 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 487
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 269 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 328
Query: 488 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 547
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 329 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 382
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
+HQL +H LRTH TE + ++T R L++ HP+ +LLQPH + I+ + R+ L+ +GG
Sbjct: 383 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGG 442
Query: 608 IIESTFSPG 616
I++ + S G
Sbjct: 443 IVDQSLSLG 451
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 107/249 (42%), Gaps = 38/249 (15%)
Query: 384 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 444 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 487
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 488 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 547
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELAGSGG 439
Query: 608 IIESTFSPG 616
I++ + S G
Sbjct: 440 IVDQSLSLG 448
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 107/249 (42%), Gaps = 38/249 (15%)
Query: 384 TPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELI 443
TP DR W D FG Q L G NP + P +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 444 EKEIGGIMTVEEAIKQKKLFILDYHDLL----------------LPYVEKVRELKGTTLY 487
+ ++E IK ++I+D+ L+ +P K E
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 488 GSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDS 547
LF+ G L P+AI++ + P P W TP H W +AK + +S
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 548 GYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGG 607
+HQL +H LRTH TE + ++T R L++ HPI +LLQPH + I+ + R+ L +GG
Sbjct: 380 NFHQLNTHLLRTHLTTESFALSTWRNLASAHPIFKLLQPHIYGVLAIDTIGRKELWGSGG 439
Query: 608 IIESTFSPG 616
I++ + S G
Sbjct: 440 IVDQSLSLG 448
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
Length = 573
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 103/228 (45%), Gaps = 22/228 (9%)
Query: 389 DRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIG 448
+R + W D FG Q L G NP +R E P R + PP + +EKE+
Sbjct: 127 ERVRDSWKEDALFGYQFLNGTNPMLLRHSVELPAR------LKFPPGMEELQAQLEKELQ 180
Query: 449 GIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIEL 508
G LF D+ LL V L + P G L P+ I+L
Sbjct: 181 G----------GTLFEADF-SLLDGIKANVILSSQQYLAVPLVMLKLQPDGKLLPMVIQL 229
Query: 509 TRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYII 568
+ P +G P +F P + +W LAK V + D H+L SH LR H E +
Sbjct: 230 -QLPREGSPL-PPLFLP---TDPPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAV 284
Query: 569 ATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
AT R L ++HPI +LL PHFRYTMEIN AR LV+ GI + S G
Sbjct: 285 ATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTG 332
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W D FG Q L G NP +R + P R PP + +EKE+
Sbjct: 222 WQEDSLFGYQFLNGANPMLLRRSVQLPARLVF------PPGMEELQAQLEKEL------- 268
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 514
K LF D+ LL V L + P G L P+ I+L P +
Sbjct: 269 ---KAGTLFEADFA-LLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLHLPKIG 324
Query: 515 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 574
P +F P+ +W LAK V + D H+L SH LR H E + +AT R L
Sbjct: 325 SSP--PPLFLPT---DPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 575 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
++HP+ +L+ PH RYT+EIN AR LV+ GI + S G
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTG 421
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
Length = 662
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W D FG Q L G NP +R + P R PP + +EKE+
Sbjct: 222 WQEDSLFGYQFLNGANPMLLRRSVQLPARLVF------PPGMEELQAQLEKEL------- 268
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMD 514
K LF D+ LL V L + P G L P+ I+L P +
Sbjct: 269 ---KAGTLFEADFA-LLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLHLPKIG 324
Query: 515 GKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQL 574
P +F P+ +W LAK V + D H+L SH LR H E + +AT R L
Sbjct: 325 SSP--PPLFLPT---DPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCL 379
Query: 575 SAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
++HP+ +L+ PH RYT+EIN AR LV+ GI + S G
Sbjct: 380 PSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTG 421
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 395 WFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454
W DE F Q L G NP +R T P R L P + +EKE+
Sbjct: 68 WQDDELFSYQFLNGANPMLLRRSTSLPSRLVL------PSGMEELRAQLEKEL------- 114
Query: 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFF--SYPSGTLRPLAIELTRPP 512
+ LF D+ +LL + ++G Y + L P+G L+P+ I++ P
Sbjct: 115 ---QNGSLFEADF--ILLDGI-PANVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQPPN 168
Query: 513 MDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNR 572
+F PS W LAK+ V D H++ H L TH E +AT R
Sbjct: 169 PSSPT--PTLFLPS---DPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMR 223
Query: 573 QLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPG 616
L +HPI + L PH RYTMEIN AR L++ GGI + S G
Sbjct: 224 CLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTG 267
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 435 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 481
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 44 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 94
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 435 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 481
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 15 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 65
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 435 ESA-ITKELIEKEIG---GIMTVEEAIKQKKLFILDYHDLLLPYVEKVREL 481
ESA +TK+ + EIG GI+T E A KK+++++ L PY K++EL
Sbjct: 17 ESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL 67
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 251 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 305
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 404 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 459
Query: 306 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 365
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 460 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 516
Query: 366 PRLV 369
PR V
Sbjct: 517 PRAV 520
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 251 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 305
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 434 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 489
Query: 306 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 365
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 490 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 546
Query: 366 PRLV 369
PR V
Sbjct: 547 PRAV 550
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 77 PSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTG 112
P G L G++ DVK + S+ E + +L+PKTG
Sbjct: 153 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTG 188
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 251 CSELARPVLGGKEHPYPRRCRTGR-----PPCETDPASESRTLINYVPRDEAFSEIKQLQ 305
+E A VL ++H P + + G P E AS +T+ + + R +IK +
Sbjct: 430 LAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKR----KKIKPVS 485
Query: 306 FSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTIL 365
S S + + D + Y D + N+GV + +T + + W T+
Sbjct: 486 LSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGV---IDDTISDSSKWATVF 542
Query: 366 PRLV 369
PR V
Sbjct: 543 PRAV 546
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,801,837
Number of Sequences: 62578
Number of extensions: 926278
Number of successful extensions: 2069
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 44
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)