Query 006428
Match_columns 645
No_of_seqs 275 out of 642
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 1E-185 2E-190 1563.9 48.6 575 55-645 83-666 (918)
2 PLN02264 lipoxygenase 100.0 8E-184 2E-188 1548.6 47.2 572 67-645 85-668 (919)
3 PLN02337 lipoxygenase 100.0 1E-181 2E-186 1535.7 48.3 576 55-645 20-611 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 5E-135 1E-139 1149.3 18.8 429 208-645 1-431 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 1.1E-38 2.3E-43 299.2 13.8 131 54-199 1-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.2 6.1E-11 1.3E-15 105.6 9.8 82 97-186 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.8 9.2E-09 2E-13 91.9 8.3 64 134-197 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.6 1.7E-07 3.7E-12 84.8 8.1 63 134-196 49-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.3 3.4E-06 7.4E-11 77.2 8.9 77 97-186 20-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.9 8.3E-05 1.8E-09 68.3 10.1 82 97-187 20-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.9 0.00013 2.8E-09 67.3 11.4 86 96-189 19-109 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 0.00015 3.2E-09 67.1 7.7 54 135-189 43-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.4 0.00049 1.1E-08 63.5 7.8 54 134-189 52-109 (120)
14 cd01754 PLAT_plant_stress PLAT 97.3 0.00049 1.1E-08 65.0 6.8 56 132-189 57-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 43.8 1.1E+02 0.0023 28.5 7.5 51 132-182 45-105 (120)
16 KOG2080 Uncharacterized conser 40.0 24 0.00052 42.9 3.2 52 136-188 1014-1069(1295)
17 TIGR03124 ctirate_citX holo-AC 27.9 28 0.0006 34.6 1.0 54 201-271 81-134 (165)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=1e-185 Score=1563.90 Aligned_cols=575 Identities=52% Similarity=0.932 Sum_probs=537.3
Q ss_pred ceeeeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEeceeCCCCCCcc---ceeccccccCCCCCC
Q 006428 55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK---PTIKGFAHRAGEDKD 130 (645)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~~---~~~~~~~~~~~~~~~ 130 (645)
+|||+|++|+++ ++++++. .+++|+++|++|++|+|||||++++|+||+|| ++|++|+++ +...+
T Consensus 83 ~i~~~v~~~~~~~~~~~~~~----------~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~ 151 (918)
T PLN02305 83 DVRAVITIRKKIKEKITEKF----------EDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDP 151 (918)
T ss_pred eEEEEEEEEeecccchhhcc----------cchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCC
Confidence 567777777665 5555544 38899999999999999999999999998555 899999986 33226
Q ss_pred CcEEEEEEEecCCCCCceeEEEEEecCCCceeeeeEEEccCCCCcEEEEeccceecCCCCCcceEEeeCcccCCCCCChH
Q 006428 131 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNG 210 (645)
Q Consensus 131 ~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nk~yLP~~tp~~ 210 (645)
++++|+++|+|+++||+||||+|+|.|++||||++|||+++|+|+|||+||||||+.++|+++||||+||+|||++||++
T Consensus 152 ~~~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~ 231 (918)
T PLN02305 152 HIVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPG 231 (918)
T ss_pred CceEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCccccCCCCCCCCCCCCCCCccc--
Q 006428 211 LTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL-- 288 (645)
Q Consensus 211 L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg~~~PyPRR~rTgR~~~~~dp~~e~r~~-- 288 (645)
|++|||+||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+||++||.+|||..
T Consensus 232 l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~ 311 (918)
T PLN02305 232 IKDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKP 311 (918)
T ss_pred HHHHHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCC
Confidence 999999999999999999999999999999999999999999999999999779999999999999999999999954
Q ss_pred -cCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCCchhhHHHHHhhh-hh
Q 006428 289 -INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LP 366 (645)
Q Consensus 289 -~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~~~~~~-~~ 366 (645)
.+||||||+|+++|++||+++++|+++|.++|.|+++++.+..+|+||+||++||++|+++|. ...+..+.+ +|
T Consensus 312 ~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~----~~~~~~~~~p~~ 387 (918)
T PLN02305 312 HPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKT----EEPKDIGLNPFL 387 (918)
T ss_pred CCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCc----hhhhhhhcCCch
Confidence 479999999999999999999999999999999999998889999999999999999999985 110122223 42
Q ss_pred -hhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHH
Q 006428 367 -RLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEK 445 (645)
Q Consensus 367 -~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~it~e~i~~ 445 (645)
.+.+.+++++|.+||||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||+|||+.
T Consensus 388 ~~~~~~i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~ 467 (918)
T PLN02305 388 GNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIER 467 (918)
T ss_pred HHHHHHhhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHh
Confidence 3333447889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceeeeC
Q 006428 446 EIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTP 525 (645)
Q Consensus 446 ~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~~~~~~VfTP 525 (645)
.|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||
T Consensus 468 ~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP 546 (918)
T PLN02305 468 ELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTH 546 (918)
T ss_pred hcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCC
Confidence 9998 999999999999999999999999999999999999999999999999999999999999988777777899999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchHHHHhhcccC
Q 006428 526 SWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNA 605 (645)
Q Consensus 526 ~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~ 605 (645)
.++++++|.|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+
T Consensus 547 ~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~ 626 (918)
T PLN02305 547 GHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLING 626 (918)
T ss_pred CCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 87777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428 606 GGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645 (645)
Q Consensus 606 gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R 645 (645)
||++|++|++|+|+|||++++|++.|+|++++||+||++|
T Consensus 627 gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kR 666 (918)
T PLN02305 627 GGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR 666 (918)
T ss_pred CCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence 9999999999999999999999988999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=7.8e-184 Score=1548.62 Aligned_cols=572 Identities=49% Similarity=0.900 Sum_probs=530.9
Q ss_pred eeeeEEEEeeccccCcc----ccccchhhhccCCcEEEEEEeceeCCCCCC---cc-ceeccccccCCCCCCCcEEEEEE
Q 006428 67 TQVKAFVTIKPSVGGLV----SGFVDDVKDMFGKSLLLELVSAELDPKTGA---EK-PTIKGFAHRAGEDKDGHIIYESK 138 (645)
Q Consensus 67 ~~~~~~~~v~~~~~~~~----~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (645)
+.++++++|++++++.+ .+++|+++|++|++|+|||||++++|+||+ |+ ++|++|+++ ....+++++|+++
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~~~~~~~y~~~ 163 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNIKAERVHYTAE 163 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCCCCCceEEEEE
Confidence 34444444444333222 388999999999999999999999999984 33 999999987 4445778899999
Q ss_pred EecCCCCCceeEEEEEecCCCceeeeeEEEccCCCCcEEEEeccceecCCCCCcceEEeeCcccCCCCCChHhHHHHHHH
Q 006428 139 FEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEE 218 (645)
Q Consensus 139 f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nk~yLP~~tp~~L~~~R~~E 218 (645)
|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+++||||+||+|||++||++|++|||+|
T Consensus 164 F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~e 243 (919)
T PLN02264 164 FTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREKE 243 (919)
T ss_pred EEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCccccCCCCCCCCCCCCCCCccc---cCccCCC
Q 006428 219 LLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL---INYVPRD 295 (645)
Q Consensus 219 L~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg~~~PyPRR~rTgR~~~~~dp~~e~r~~---~~yvPrD 295 (645)
|++|||||+||||+||||||||+|||||+||++++++||||||++|||||||||||+||++||.+|||.. .+|||||
T Consensus 244 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPrD 323 (919)
T PLN02264 244 LRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPRD 323 (919)
T ss_pred HHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCCC
Confidence 9999999999999999999999999999999999999999999779999999999999999999999954 4799999
Q ss_pred cccchhhhhchhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCCchhhHHHHHhhh-hhhhhccccc
Q 006428 296 EAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LPRLVKGIED 374 (645)
Q Consensus 296 e~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~~~~~~-~~~i~e~~~~ 374 (645)
|+|+++|++||+++++||++|.++|.|+++++.+ +|+||+||++||++|+++|.. ..++..+.+ +|.+.+.+++
T Consensus 324 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~---~~~~~~~~~p~~~~~~~~~~ 398 (919)
T PLN02264 324 EQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG---FQDDIFKKFPLPKVVTTLQE 398 (919)
T ss_pred CCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc---hhhhHhhcCChHHHHHHhhh
Confidence 9999999999999999999999999999998754 999999999999999999851 112233344 4344444588
Q ss_pred cCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHHhhCCcccHH
Q 006428 375 TGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454 (645)
Q Consensus 375 ~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~it~e~i~~~L~g~~tl~ 454 (645)
+++.+||||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||+.||+++|+||++||++.|+| +||+
T Consensus 399 ~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl~ 477 (919)
T PLN02264 399 SSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSVQ 477 (919)
T ss_pred cccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCchh
Q 006428 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWL 534 (645)
Q Consensus 455 eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~~~~~~VfTP~d~~~~~~~ 534 (645)
|||++|||||+||||++||+++++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||+++++++|.
T Consensus 478 eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~ 557 (919)
T PLN02264 478 QALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWM 557 (919)
T ss_pred HHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999987766667899999776778999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchHHHHhhcccCCceeccccc
Q 006428 535 WRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFS 614 (645)
Q Consensus 535 W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~f~ 614 (645)
|+||||||++||++|||+|+||++||++||||||||+||||++|||||||.||||+||+||++||+.|||+||++|++|+
T Consensus 558 W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f~ 637 (919)
T PLN02264 558 WQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCFT 637 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428 615 PGKYSMELSSVAYDKHWRFDHEALPKDLISR 645 (645)
Q Consensus 615 ~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R 645 (645)
+|+|+|||++++|++.|+|++++||+||++|
T Consensus 638 pg~~~~elss~aYk~~W~F~~~~LP~DL~~R 668 (919)
T PLN02264 638 AGQYGMEISAAAYKNSWRFDMEGLPADLIRR 668 (919)
T ss_pred cchhHHHHHHHHHHhccCCccccCHHHHHHc
Confidence 9999999999999966999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.1e-181 Score=1535.65 Aligned_cols=576 Identities=46% Similarity=0.783 Sum_probs=539.9
Q ss_pred ceeeeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEeceeCC-CCC-Ccc----ceeccccccCCC
Q 006428 55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDP-KTG-AEK----PTIKGFAHRAGE 127 (645)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~~-~~~----~~~~~~~~~~~~ 127 (645)
+|||+|++|+++ ++++++.+ +++|+++|++||+|+|||||++++| +|| +|| ++|++|+++.+.
T Consensus 20 ~~~~~v~l~~k~~ld~~~~~~----------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~ 89 (866)
T PLN02337 20 KIKGTVVLMKKNVLDFNDFNA----------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITS 89 (866)
T ss_pred eEEEEEEEEEecccchhhccc----------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCC
Confidence 799999999997 78877664 8899999999999999999999998 677 443 999999987666
Q ss_pred CCCCcEEEEEEEecCCCCCceeEEEEEecCCCceeeeeEEEccCC-CCcEEEEeccceecCCCCCcceEEeeCcccCCCC
Q 006428 128 DKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPR-NGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQ 206 (645)
Q Consensus 128 ~~~~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p-~g~i~F~cnsWV~~~~~~~~~riff~nk~yLP~~ 206 (645)
..+++++|+|+|+|+++||+||||+|+|.|++||||++|+|+++| +|+|||+||||||++++|+++||||+||+|||++
T Consensus 90 ~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~ 169 (866)
T PLN02337 90 LTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQ 169 (866)
T ss_pred CCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCccc
Confidence 567888999999999999999999999999999999999999999 5899999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCccccCCCCCCCCCCCCCCC
Q 006428 207 TPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASES 285 (645)
Q Consensus 207 tp~~L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg-~~~PyPRR~rTgR~~~~~dp~~e~ 285 (645)
||++|++|||+||++|||||+||||+||||||||+|||||+||++++++|||||| ++|||||||||||+||++||.+||
T Consensus 170 tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~es 249 (866)
T PLN02337 170 TPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSES 249 (866)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999 679999999999999999999999
Q ss_pred ccc----cCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCCchhhHHHHH
Q 006428 286 RTL----INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALW 361 (645)
Q Consensus 286 r~~----~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~~~ 361 (645)
|.. .+||||||+|+++|++||+++++||++|+++|.|+++++.+..+|++|+||++||++|+++|.. +..+.+.
T Consensus 250 r~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~--~~~~~~~ 327 (866)
T PLN02337 250 RLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNG--PLLEELR 327 (866)
T ss_pred ccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCc--hHHHHhh
Confidence 943 4799999999999999999999999999999999999988889999999999999999999851 0112233
Q ss_pred hhh-hhhhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcccH
Q 006428 362 RTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITK 440 (645)
Q Consensus 362 ~~~-~~~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~it~ 440 (645)
+.+ ++.++++++++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+
T Consensus 328 ~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~ 407 (866)
T PLN02337 328 KNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITE 407 (866)
T ss_pred hcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCH
Confidence 323 4567888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCC--CC
Q 006428 441 ELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGK--PQ 518 (645)
Q Consensus 441 e~i~~~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~--~~ 518 (645)
+||++.|+| +||+|||++|||||+||||++|||+.++|...++ .|||+||||++++|+|+||||||++|+..++ ++
T Consensus 408 e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~ 485 (866)
T PLN02337 408 EHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGA 485 (866)
T ss_pred HHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCC
Confidence 999999988 9999999999999999999999999989976554 9999999999999999999999998765433 45
Q ss_pred CceeeeCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchHHH
Q 006428 519 WKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALA 598 (645)
Q Consensus 519 ~~~VfTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA 598 (645)
+++||||+++++++|.|+||||||++||+++||+|+||++||++||||||||+||||++|||||||.||||+||+||++|
T Consensus 486 ~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~A 565 (866)
T PLN02337 486 VSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALA 565 (866)
T ss_pred CCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 79999999877779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428 599 REALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645 (645)
Q Consensus 599 R~~LI~~gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R 645 (645)
|+.|||+||++|+++++|+|+|||++++|++ |+|++++||+||++|
T Consensus 566 R~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~R 611 (866)
T PLN02337 566 RQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKR 611 (866)
T ss_pred HHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHc
Confidence 9999999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=5e-135 Score=1149.32 Aligned_cols=429 Identities=61% Similarity=1.014 Sum_probs=366.3
Q ss_pred ChHhHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCccccCCCCCCCCCCCCCCCc
Q 006428 208 PNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASESR 286 (645)
Q Consensus 208 p~~L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg-~~~PyPRR~rTgR~~~~~dp~~e~r 286 (645)
|.+|+++|++||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cccCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCCchhhHHHHHhhh-h
Q 006428 287 TLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-L 365 (645)
Q Consensus 287 ~~~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~~~~~~-~ 365 (645)
...+||||||+|+++|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++|. +.+.+.. +
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~------~~~~~~~~~ 154 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT------DLLKKLIPL 154 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H------HHHCCHTTS
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh------hHhhhcCcH
Confidence 88999999999999999999999999999999999999987788999999999999999999883 1222222 4
Q ss_pred hhhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHH
Q 006428 366 PRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEK 445 (645)
Q Consensus 366 ~~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~it~e~i~~ 445 (645)
+.+++++..+++.++|||+|+++++++++|++|+|||||+|||+||++|++|+++|++++|||++||+++++||+|||+.
T Consensus 155 ~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~ 234 (667)
T PF00305_consen 155 ELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEP 234 (667)
T ss_dssp TTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHH
T ss_pred HHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhh
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceeeeC
Q 006428 446 EIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTP 525 (645)
Q Consensus 446 ~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~~~~~~VfTP 525 (645)
.|+| +||++||++|||||+|||++++|+++++|. ++++.|||+||||++++|+|+||||||++|+..+.++.++||||
T Consensus 235 ~l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP 312 (667)
T PF00305_consen 235 QLEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTP 312 (667)
T ss_dssp HCHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-T
T ss_pred ccCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeec
Confidence 9999 999999999999999999999999999987 78899999999999999999999999988765544567899999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchHHHHhhcccC
Q 006428 526 SWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNA 605 (645)
Q Consensus 526 ~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~ 605 (645)
+++++.+|.|+||||||++||+++||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++|||+
T Consensus 313 ~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~ 392 (667)
T PF00305_consen 313 SDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINA 392 (667)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSST
T ss_pred CCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhcc
Confidence 96556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428 606 GGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645 (645)
Q Consensus 606 gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R 645 (645)
||+||++|++|+|+|+|++++|++ |+|++++||+||++|
T Consensus 393 gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~R 431 (667)
T PF00305_consen 393 GGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKR 431 (667)
T ss_dssp TSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHT
T ss_pred CcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhh
Confidence 999999999999999999999999 999999999999998
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=1.1e-38 Score=299.22 Aligned_cols=131 Identities=47% Similarity=0.788 Sum_probs=118.2
Q ss_pred cceeeeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEeceeCCCCCCcc----ceeccccccCCCC
Q 006428 54 VNIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGED 128 (645)
Q Consensus 54 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~~----~~~~~~~~~~~~~ 128 (645)
+++||+|++|+++ ++++++. +.+|+++|++|++|+|||||+++||+||+|| ++|++|.++.
T Consensus 1 ~~vka~V~v~~k~~~~~~~~~-----------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~--- 66 (137)
T cd01751 1 VKVKATVTVMKKNKLDLNDDG-----------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL--- 66 (137)
T ss_pred CEEEEEEEEEEeecccccccc-----------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC---
Confidence 3688888888886 6666533 5789999999999999999999999998655 9999998653
Q ss_pred CCCcEEEEEEEecCCCCCceeEEEEEecCCCceeeeeEEEccCC-CCcEEEEeccceecCCCCCcceEEeeC
Q 006428 129 KDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPR-NGPVNITCGSWVQSKHVNKQKRIFFTN 199 (645)
Q Consensus 129 ~~~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p-~g~i~F~cnsWV~~~~~~~~~riff~n 199 (645)
+++++|+++|+||++||+||||+|+|+|++||||++|+|+++| +|+|||+|||||||+++|+++||||+|
T Consensus 67 -~~e~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 67 -AGESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred -CcceEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 5677999999999999999999999999999999999999999 589999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.21 E-value=6.1e-11 Score=105.64 Aligned_cols=82 Identities=34% Similarity=0.504 Sum_probs=63.0
Q ss_pred cEEEEEEeceeCCCCCCc-cceeccccccCCCCCCCcEEEEEEEecCCCCCceeEEEEEecC-CCceeeeeEEEccCCCC
Q 006428 97 SLLLELVSAELDPKTGAE-KPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRNG 174 (645)
Q Consensus 97 ~v~lqLvS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~l~~~p~g 174 (645)
+|.|+|++++.+ +|.. ...++.|. . +....|+..|+++.++|++++|.|++++ ..+|||++|+|++.+.|
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f-~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----F-ARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----c-cCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 699999998654 2321 13344442 1 2234677777799999999999999999 79999999999877655
Q ss_pred -cEEEEeccceec
Q 006428 175 -PVNITCGSWVQS 186 (645)
Q Consensus 175 -~i~F~cnsWV~~ 186 (645)
.++|+||+||++
T Consensus 92 ~~~~F~c~~Wl~~ 104 (105)
T smart00308 92 GKYHFPCNSWVYP 104 (105)
T ss_pred CEEEEEcCceeCC
Confidence 899999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.85 E-value=9.2e-09 Score=91.87 Aligned_cols=64 Identities=23% Similarity=0.538 Sum_probs=55.5
Q ss_pred EEEEEEecCCCCCceeEEEEEec---CCCceeeeeEEEccCCCC-cEEEEeccceecCCCCCcceEEe
Q 006428 134 IYESKFEVPPSFGEVGAILVENE---HHKEMYLNDIVLDGPRNG-PVNITCGSWVQSKHVNKQKRIFF 197 (645)
Q Consensus 134 ~~~~~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~~~~~riff 197 (645)
..+..|..+.++|+|.+|.|.++ +...|||++|+|...+.| .+.|+||+||....+++.+||||
T Consensus 46 ~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 34444546789999999999998 678999999999876666 89999999999999999999997
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.58 E-value=1.7e-07 Score=84.83 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=53.3
Q ss_pred EEEEEEecCCCCCceeEEEEEecCCC---ceeeeeEEEccCCCC-cEEEEeccceecCCCCCcceEE
Q 006428 134 IYESKFEVPPSFGEVGAILVENEHHK---EMYLNDIVLDGPRNG-PVNITCGSWVQSKHVNKQKRIF 196 (645)
Q Consensus 134 ~~~~~f~~~~~~G~pgai~v~n~~~~---e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~~~~~rif 196 (645)
.++..|..+.++|++.+|.|++++.. +|||++|+|.+...| .++|+||+||.....++..|+|
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 34445557789999999999998875 999999999876655 8999999999998888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.28 E-value=3.4e-06 Score=77.23 Aligned_cols=77 Identities=13% Similarity=0.299 Sum_probs=55.0
Q ss_pred cEEEEEEeceeCCCCCCccceeccccccCCCCCCCcEEEEEEEecCCCCCceeEEEEEecC-CCceeeeeEEEccCCCC-
Q 006428 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRNG- 174 (645)
Q Consensus 97 ~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~l~~~p~g- 174 (645)
+|.|+||-++- .++ +..|.+ .-.....++|.++ +.++|++-.|.|.|.. .+.|||+.|+|++ |.|
T Consensus 20 ~V~i~L~G~~g--~S~--~~~L~~-----~F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~ 86 (109)
T cd02899 20 TIEITLLGSSG--RSN--PKTLSQ-----GFYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGK 86 (109)
T ss_pred eEEEEEEECCC--CcC--CEEccC-----ccCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCC
Confidence 48899996632 222 222322 1112335577665 7899999999998877 4789999999986 766
Q ss_pred cEEEEeccceec
Q 006428 175 PVNITCGSWVQS 186 (645)
Q Consensus 175 ~i~F~cnsWV~~ 186 (645)
.++||||+|+..
T Consensus 87 ~~~Fpc~rWla~ 98 (109)
T cd02899 87 VFAFNVKRWIGY 98 (109)
T ss_pred EEEEEcceeeCC
Confidence 788999999964
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.90 E-value=8.3e-05 Score=68.27 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=55.3
Q ss_pred cEEEEEEeceeCCCCCCccceeccccccCCCCCCCcEEEEEEEecCCCCCceeEEEEEecC---CCceeeeeEEEccCCC
Q 006428 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN 173 (645)
Q Consensus 97 ~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~ 173 (645)
+|.|+|+-++-+ ++ .-.|..... .-.....+.|.++ .+.++|++-.|.|+.+. ...|||+.|+|++..
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~--~FerG~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~- 90 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGY--DFERGAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPG- 90 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCC--ccCCCCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCC-
Confidence 488888865421 22 222332111 1111223466655 77899999999999876 479999999998643
Q ss_pred C-cEEEEeccceecC
Q 006428 174 G-PVNITCGSWVQSK 187 (645)
Q Consensus 174 g-~i~F~cnsWV~~~ 187 (645)
| ..+||||+|+...
T Consensus 91 ~~~~~F~c~rWl~~~ 105 (113)
T cd01753 91 GDEYHFPCYRWIEGY 105 (113)
T ss_pred CCEEEEEhHHeECCC
Confidence 6 7899999999775
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.90 E-value=0.00013 Score=67.29 Aligned_cols=86 Identities=12% Similarity=0.309 Sum_probs=57.5
Q ss_pred CcEEEEEEeceeCCCCCCccceeccccccCCCCC-CCcEEEEEEEecCCCCCceeEEEEEecCC---CceeeeeEEEccC
Q 006428 96 KSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDK-DGHIIYESKFEVPPSFGEVGAILVENEHH---KEMYLNDIVLDGP 171 (645)
Q Consensus 96 ~~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~G~pgai~v~n~~~---~e~fl~~i~l~~~ 171 (645)
-+|.++|+-+.- . .+.-.|.++.. ..... ....+|.++ . .++|++-.|.|+.+.. ..|||+.|+|.+.
T Consensus 19 a~V~i~L~G~~g--~--s~~~~L~~~~~-~~~FerGs~d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~ 90 (120)
T cd01756 19 ANVFITLYGENG--D--TGKRKLKKSNN-KNKFERGQTDKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREP 90 (120)
T ss_pred cEEEEEEEeCCC--c--cccEEccCCCc-CCcccCCCeEEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEEC
Confidence 348888875321 1 22334554310 11121 224567766 4 7999999999998764 6899999999865
Q ss_pred CCC-cEEEEeccceecCCC
Q 006428 172 RNG-PVNITCGSWVQSKHV 189 (645)
Q Consensus 172 p~g-~i~F~cnsWV~~~~~ 189 (645)
..| ..+||||+|+...+.
T Consensus 91 ~~~~~~~F~~~~Wl~~~~~ 109 (120)
T cd01756 91 GTGDEYTFPCNRWLDKDED 109 (120)
T ss_pred CCceEEEEEeCCccCCCCC
Confidence 556 789999999987653
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.67 E-value=0.00015 Score=67.12 Aligned_cols=54 Identities=13% Similarity=0.410 Sum_probs=43.8
Q ss_pred EEEEEecCCCCCceeEEEEEecC---CCceeeeeEEEccCCCC-cEEEEeccceecCCC
Q 006428 135 YESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG-PVNITCGSWVQSKHV 189 (645)
Q Consensus 135 ~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~ 189 (645)
|+..+. +.++|+.-.|.|..+. ...|||+.|+|++.+.| .++||||+|+...+.
T Consensus 43 f~~~v~-~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 43 LEMTFD-CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eEEEEe-cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 443433 3899999999999866 37999999999987766 799999999987654
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.42 E-value=0.00049 Score=63.50 Aligned_cols=54 Identities=17% Similarity=0.405 Sum_probs=43.1
Q ss_pred EEEEEEecCCCCCceeEEEEEecC---CCceeeeeEEEccCCCC-cEEEEeccceecCCC
Q 006428 134 IYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG-PVNITCGSWVQSKHV 189 (645)
Q Consensus 134 ~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~~ 189 (645)
+|.++ .+.++|++-.|.|..+. ...|||++|+|.+...| ..+||||+|+...+.
T Consensus 52 ~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 52 SFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVEEG 109 (120)
T ss_pred EEEec--CccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCcCC
Confidence 45444 67899999999998765 37999999999865445 789999999987643
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.34 E-value=0.00049 Score=64.95 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=45.0
Q ss_pred cEEEEEEEecCCCCCceeEEEEEecC---CCceeeeeEEEccCCC---C-cEEEEeccceecCCC
Q 006428 132 HIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN---G-PVNITCGSWVQSKHV 189 (645)
Q Consensus 132 ~~~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~---g-~i~F~cnsWV~~~~~ 189 (645)
.+.|.++ .+.++|++-.|.|+... ...|||..|+|.+... + .++||||+|+...++
T Consensus 57 ~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 57 LDRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred ccEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 4578777 67889999999999765 4799999999987543 2 799999999976543
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=43.81 E-value=1.1e+02 Score=28.50 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=38.9
Q ss_pred cEEEEEEEecCCCCCceeEEEEEecC----------CCceeeeeEEEccCCCCcEEEEecc
Q 006428 132 HIIYESKFEVPPSFGEVGAILVENEH----------HKEMYLNDIVLDGPRNGPVNITCGS 182 (645)
Q Consensus 132 ~~~~~~~f~~~~~~G~pgai~v~n~~----------~~e~fl~~i~l~~~p~g~i~F~cns 182 (645)
...|+.-+..+.++|..-.|.++-+. ...||++.|+|++..++.-..-|.+
T Consensus 45 g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 45 NKTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CCEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 34666666688999999999987433 2489999999987777766667876
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=40.02 E-value=24 Score=42.87 Aligned_cols=52 Identities=15% Similarity=0.448 Sum_probs=37.7
Q ss_pred EEEEecCCCCCceeEEEEEecC---CCceeeeeEEEccCCCC-cEEEEeccceecCC
Q 006428 136 ESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG-PVNITCGSWVQSKH 188 (645)
Q Consensus 136 ~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~i~F~cnsWV~~~~ 188 (645)
+..|+. .++|..--+.|-... ...||++.|.|..--.| ++.|||++|.-+..
T Consensus 1014 ~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1014 LFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred eeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcc
Confidence 344443 789999888885433 36899999887532256 99999999997653
No 17
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=27.90 E-value=28 Score=34.55 Aligned_cols=54 Identities=30% Similarity=0.461 Sum_probs=33.6
Q ss_pred ccCCCCCChHhHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCccccC
Q 006428 201 SYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCR 271 (645)
Q Consensus 201 ~yLP~~tp~~L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg~~~PyPRR~r 271 (645)
+|+--+.++.-.+..-=+|++--- -=|++|.|||+.-| ..+.|--||= | ||||=
T Consensus 81 ~~~~v~~~a~~vK~~~i~iEe~hp--------lGRL~DlDV~~~~g-----~~iSR~~lg~---~-~R~Cl 134 (165)
T TIGR03124 81 AFLVVDAPALELKRLMIKLEESHP--------LGRLWDIDVLDADG-----KSLSRTDLGL---P-PRKCL 134 (165)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCc--------hhhheeheeecCCC-----CCcCHHHcCC---C-CCeee
Confidence 344445565556666666666542 22899999997433 3466776663 3 88885
Done!