BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006429
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYT|A Chain A, Structure Determination Of Esta From Arthrobacter
Nitroguajacolicus Rue61a
Length = 372
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 499 QVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEE 558
QV AY G ++D S G P ++PDS+ VFS +KG+ ++ LV +G+L LE
Sbjct: 30 QVAAYHRGVKVLDLSGG------PH-IRPDSVTGVFSCSKGMAGLVMALLVQDGELDLEA 82
Query: 559 NIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPE 618
+ WPEF GK I V +L+H +GL V L+ + + + ++A P
Sbjct: 83 EVVKYWPEFGVEGKSSITVAQLLSHRAGLLGVEGGLTLHE---VNNSELAAAKLAELPPL 139
Query: 619 TEPGQEQLYHYLSFG 633
+PG YH L+ G
Sbjct: 140 WKPGTAFGYHALTIG 154
>pdb|1CI9|A Chain A, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
pdb|1CI9|B Chain B, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
pdb|1CI8|A Chain A, Esterase Estb From Burkholderia Gladioli: An Esterase With
(Beta)-Lactamase Fold.
pdb|1CI8|B Chain B, Esterase Estb From Burkholderia Gladioli: An Esterase With
(Beta)-Lactamase Fold
Length = 392
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 494 KILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK 553
+++G + GE++ + G+ R RP++ D+LF + SVTK I A + LV G+
Sbjct: 34 RLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGE 93
Query: 554 LKLEENIANIWPEFKSNGKD----LIKVHHVLNHTSGLH----------NVSVDLSSENP 599
L L+ + PEF+ D L+ +HH+L HTSGL + +S
Sbjct: 94 LALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGID 153
Query: 600 LLICDWDECLNRIALSAPETEPGQEQLY 627
L D DE L R+A + PG Y
Sbjct: 154 LRDFDLDENLRRLASAPLSFAPGSGWQY 181
>pdb|2QMI|A Chain A, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|B Chain B, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|C Chain C, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|D Chain D, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|E Chain E, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|F Chain F, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|G Chain G, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
pdb|2QMI|H Chain H, Structure Of The Octameric Penicillin-Binding Protein
Homologue From Pyrococcus Abyssi
Length = 447
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 480 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 539
KL F+VE + K+ GI + KDG+V+ G P P++++ + S+TK
Sbjct: 4 GKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKS 63
Query: 540 ITAGMLHWLVDNGKLKLE---ENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 596
TA + LV+ G L L+ E NI + + G+ + VHH+L H+SG+ ++ +
Sbjct: 64 FTALAIMKLVEEGGLSLDDPVEKFVNI--KLRPFGEP-VTVHHLLTHSSGIPSLGYAEAF 120
Query: 597 ENPLLICDWDECLNRIALSAPE--------------TEPGQEQLYHYLSFGW-LCGGIIE 641
+ ++ D N + +S PE +PG+ + YL+ G+ L G IIE
Sbjct: 121 IDGMVGGD-----NWLPVSTPEETIAFARDMEKWAVAKPGER--FFYLNTGYVLLGKIIE 173
>pdb|1HVB|A Chain A, Crystal Structure Of Streptomyces R61 Dd-Peptidase
Complexed With A Novel Cephalosporin Analog Of Cell Wall
Peptidoglycan
pdb|1IKG|A Chain A, Michaelis Complex Of Streptomyces R61 Dd-Peptidase With A
Specific Peptidoglycan Substrate Fragment
pdb|1IKI|A Chain A, Complex Of Streptomyces R61 Dd-peptidase With The Products
Of A Specific Peptidoglycan Substrate Fragment
pdb|1MPL|A Chain A, Crystal Structure Of Phosphonate-Inhibited D-Ala-D-Ala
Peptidase Reveals An Analog Of A Tetrahedral Transition
State
pdb|1SCW|A Chain A, Toward Better Antibiotics: Crystal Structure Of R61
Dd-Peptidase Inhibited By A Novel Monocyclic Phosphate
Inhibitor
pdb|1PW1|A Chain A, Non-Covalent Complex Of Streptomyces R61 Dd-Peptidase With
A Highly Specific Penicillin
pdb|1PW8|A Chain A, Covalent Acyl Enzyme Complex Of The R61 Dd-Peptidase With
A Highly Specific Cephalosporin
pdb|1PWC|A Chain A, Penicilloyl Acyl Enzyme Complex Of The Streptomyces R61
Dd-Peptidase With Penicillin G
pdb|1PWD|A Chain A, Covalent Acyl Enzyme Complex Of The Streptomyces R61
Dd-peptidase With Cephalosporin C
pdb|1PWG|A Chain A, Covalent Penicilloyl Acyl Enzyme Complex Of The
Streptomyces R61 Dd- Peptidase With A Highly Specific
Penicillin
pdb|1YQS|A Chain A, Inhibition Of The R61 Dd-peptidase By
N-benzoyl-beta-sultam
pdb|1CEF|A Chain A, Cefotaxime Complexed With The Streptomyces R61
Dd-peptidase
pdb|1CEG|A Chain A, Cephalothin Complexed With Dd-Peptidase
pdb|3PTE|A Chain A, The Refined Crystallographic Structure Of A Dd-Peptidase
Penicillin- Target Enzyme At 1.6 A Resolution
Length = 349
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 505 DGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIW 564
D I S G+ R R + F V SVTK +A +L LVD GKL L+ ++
Sbjct: 32 DNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYL 91
Query: 565 PEFKSNGKDLIKVHHVLNHTSGLHNVSVDL 594
P + D I V V++H SGL++ + D+
Sbjct: 92 PGLLPD--DRITVRQVMSHRSGLYDYTNDM 119
>pdb|1SDE|A Chain A, Toward Better Antibiotics: Crystal Structure Of
D-Ala-D-Ala Peptidase Inhibited By A Novel Bicyclic
Phosphate Inhibitor
Length = 347
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 505 DGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIW 564
D I S G+ R R + F V SVTK +A +L LVD GKL L+ ++
Sbjct: 32 DNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYL 91
Query: 565 PEFKSNGKDLIKVHHVLNHTSGLHNVSVDL 594
P + D I V V++H SGL++ + D+
Sbjct: 92 PGLLPD--DRITVRQVMSHRSGLYDYTNDM 119
>pdb|2WZX|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Complex
With Compound M-02
pdb|2WZZ|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Complex
With Compound M-03
Length = 371
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 513 SAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGK 572
S G+ + D R V P++LF + SV+K TA + + + K++L++ + WP + +
Sbjct: 42 SYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRF 101
Query: 573 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLS- 631
D I + + +T+G + S + D + + P PG ++LY S
Sbjct: 102 DGISLLDLATYTAGGLPLQFPDSVQK-----DQAQIRDYYRQWQPTYAPGSQRLYSNPSI 156
Query: 632 --FGWLC 636
FG+L
Sbjct: 157 GLFGYLA 163
>pdb|3S1Y|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Complex
With A Beta- Lactamase Inhibitor
pdb|3S22|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Complex
With An Inhibitor
Length = 371
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 513 SAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGK 572
S G+ + D R V P++LF + SV+K TA + + + K++L++ + WP + +
Sbjct: 42 SYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRF 101
Query: 573 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLS- 631
D I + + +T+G + S + D + + P PG ++LY S
Sbjct: 102 DGISLLDLATYTAGGLPLQFPDSVQK-----DQAQIRDYYRQWQPTYAPGSQRLYSNPSI 156
Query: 632 --FGWLC 636
FG+L
Sbjct: 157 GLFGYLA 163
>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta-
Lactamase
Length = 358
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 495 ILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL 554
I G+ V ++G+ + G+ + +P+ ++LF + SV+K TA + + + NGKL
Sbjct: 21 IAGLSVAVIQNGKAQY-FNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKL 79
Query: 555 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIAL 614
KL + + P + + D I + ++ +T+G + S+N + + +
Sbjct: 80 KLSDPASQYLPALRGDKFDHISLLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWK---- 135
Query: 615 SAPETEPGQEQLYHYLSFG 633
P PG ++LY S G
Sbjct: 136 --PAFAPGTQRLYSNPSIG 152
>pdb|4GDN|A Chain A, Structure Of Fmta-Like Protein
pdb|4GDN|B Chain B, Structure Of Fmta-Like Protein
pdb|4GDN|C Chain C, Structure Of Fmta-Like Protein
pdb|4GDN|D Chain D, Structure Of Fmta-Like Protein
Length = 342
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 493 GKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNG 552
G I G + K+G+V ++ G P + + + S TK T + L G
Sbjct: 26 GHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFTGLAILKLAQEG 85
Query: 553 KLKLEENIANIWPEFKSN---GKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECL 609
+L L ++++ P FK N + I + +L TSG + D++SE+ + + + L
Sbjct: 86 RLNLNDDVSKHVPHFKMNYNGQNETITIKQLLAQTSG---IPSDITSEDA--VTNKNNRL 140
Query: 610 NRIALSAPETE----PGQEQLYHYLSFGWLCGGIIE 641
N + + E PG+E Y +++ L G II+
Sbjct: 141 NDVTRAIMGDELHHKPGEEFEYSNMNYD-LLGLIIQ 175
>pdb|1FR1|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR1|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
RPV +LF + SV+K + + G++KL + + WPE I + H+
Sbjct: 52 RPVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTQYWPELTGKQWQGISLLHLAT 111
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ PG ++LY S G
Sbjct: 112 YTAG------GLPLQVPDDVTDKAALLRFYQNWQPQWAPGAKRLYANSSIG 156
>pdb|1BLS|A Chain A, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1BLS|B Chain B, Crystallographic Structure Of A Phosphonate Derivative Of
The Enterobacter Cloacae P99 Cephalosporinase:
Mechanistic Interpretation Of A Beta-Lactamase
Transition State Analog
pdb|1XX2|A Chain A, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
pdb|1XX2|B Chain B, Refinement Of P99 Beta-Lactamase From Enterobacter Cloacae
Length = 361
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 52 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDAVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG 156
>pdb|3OZH|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis
pdb|3RJU|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
Carboxypeptidase From Yersinia Pestis Complexed With
Citrate
Length = 351
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF----KSNGKDLIKVH 578
RP +PDSL + S+TK T+ + L D+G +KL + + P+ + K I++
Sbjct: 51 RP-RPDSLIRIASITKLXTSEIXVKLADDGIVKLTDPLKKYAPKGVNVPSYSAKQPIRLL 109
Query: 579 HVLNHTSGLHNVSVDLSSENPLLICDWDECLNR---IALSAPETEPGQEQLYHYLSFGWL 635
H+ +HTSGL + P+ W NR + L+ PG + Y L++ L
Sbjct: 110 HLASHTSGLPREQPGGPQKRPVFT--WPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLL 167
Query: 636 C 636
Sbjct: 168 A 168
>pdb|2Q9M|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
pdb|2Q9N|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase
Inhibitors: Structure-Based Design, Synthesis And
Biological Activity
Length = 359
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 51 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDAVTRYWPQLTGKQWQGIRMLDLAT 110
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 111 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG 155
>pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae
Gc1
pdb|1GA0|A Chain A, Structure Of The E. Cloacae Gc1 Beta-Lactamase With A
Cephalosporin Sulfone Inhibitor
pdb|1ONH|A Chain A, Gc1 Beta-Lactamase With A Penem Inhibitor
Length = 364
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 52 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG 156
>pdb|1RGZ|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Transition-State Analog Of Cefotaxime
pdb|1Q2Q|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed
With Penem Way185229
Length = 363
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 51 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 110
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 111 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG 155
>pdb|3S4X|A Chain A, Crystal Structure Of The Asn152gly Mutant Of P99
Beta-lactamase
Length = 367
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 52 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYAGASIG 156
>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
pdb|1L0F|B Chain B, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
Length = 358
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY + S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYAHSSIG 153
>pdb|2ZC7|A Chain A, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|B Chain B, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|C Chain C, Crystal Structure Of Class C Beta-Lactamase Act-1
pdb|2ZC7|D Chain D, Crystal Structure Of Class C Beta-Lactamase Act-1
Length = 359
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L + + WPE I++ +
Sbjct: 51 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLGDPVTKYWPELTGKQWQGIRMLDLAT 110
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D L P+ +PG +LY S G
Sbjct: 111 YTAG------GLPLQVPDEVKDNASLLRFYQNWQPQWKPGTTRLYANASIG 155
>pdb|1S6R|A Chain A, 908r Class C Beta-Lactamase Bound To Iodo-Acetamido-Phenyl
Boronic Acid
Length = 359
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 50 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 109
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + D + P+ +PG +LY S G
Sbjct: 110 YTAG------GLPLQVPDEVTDNASLVRFYQNWQPQWKPGTTRLYANASIG 154
>pdb|1Y54|A Chain A, Crystal Structure Of The Native Class C Beta-Lactamase
From Enterobacter Cloacae 908r Complexed With Brl42715
Length = 361
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV P +LF + S++K T + + G++ L++ + WP+ I++ +
Sbjct: 52 KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 583 HTSGLHNVSV-DLSSENPLLI---CDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G + V D ++N L+ +W P+ +PG +LY S G
Sbjct: 112 YTAGGLPLQVPDEVTDNASLVRFYQNWQ----------PQWKPGTTRLYANASIG 156
>pdb|1ZC2|A Chain A, Crystal Structure Of Plasmid-Encoded Class C
Beta-Lactamase Cmy-2 Complexed With Citrate Molecule
pdb|1ZC2|B Chain B, Crystal Structure Of Plasmid-Encoded Class C
Beta-Lactamase Cmy-2 Complexed With Citrate Molecule
Length = 361
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 524 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH 583
PV +LF + SV+K + + G++KL + + WPE I++ H+ +
Sbjct: 53 PVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTKYWPELTGKQWQGIRLLHLATY 112
Query: 584 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
T+G L + P + D L+ P+ PG ++LY S G
Sbjct: 113 TAG------GLPLQIPDDVRDKAALLHFYQNWQPQWTPGAKRLYANSSIG 156
>pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
Length = 358
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYAASSIG 153
>pdb|1RGY|A Chain A, Citrobacter Freundii Gn346 Class C Beta-Lactamase
Complexed With Transition-State Analog Of Cefotaxime
Length = 360
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 524 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH 583
PV +LF + SV+K + + G++KL + + WPE I + H+ +
Sbjct: 52 PVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTKYWPELTGKQWRGISLLHLATY 111
Query: 584 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
T+G L + P I D L P+ PG ++LY S G
Sbjct: 112 TAG------GLPLQIPDDITDKAALLRFYQNWQPQWTPGAKRLYANSSIG 155
>pdb|2ZJ9|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
pdb|2ZJ9|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
Length = 355
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3IWI|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
pdb|3IWI|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
Length = 361
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1PI4|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI4|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI5|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|1PI5|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|2FFY|A Chain A, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|2BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|A Chain A, Ampc Beta-lactamase From Escherichia Coli
pdb|3BLS|B Chain B, Ampc Beta-lactamase From Escherichia Coli
pdb|1C3B|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1C3B|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1FCO|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1FCO|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1IEL|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEL|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEM|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1IEM|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1GA9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1GA9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1KVM|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KVM|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDS|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDW|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KDW|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KE0|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE0|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE3|A Chain A, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE3|B Chain B, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE4|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1KE4|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1L2S|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1L2S|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1LL9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LL9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LLB|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LLB|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LL5|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1LL5|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1MXO|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MXO|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1XGI|A Chain A, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGI|B Chain B, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|A Chain A, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|B Chain B, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|2HDQ|A Chain A, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDQ|B Chain B, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDR|A Chain A, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDR|B Chain B, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDS|A Chain A, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDS|B Chain B, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDU|A Chain A, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2HDU|B Chain B, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2P9V|B Chain B, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
pdb|2I72|A Chain A, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2I72|B Chain B, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2RCX|A Chain A, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2RCX|B Chain B, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2PU2|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU2|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU4|A Chain A, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2PU4|B Chain B, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2R9W|A Chain A, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9W|B Chain B, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|3BM6|A Chain A, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3BM6|B Chain B, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3GQZ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GQZ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3O86|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O86|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|4E3I|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3I|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3N|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3N|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3O|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
pdb|4E3O|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
Length = 358
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSW|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSY|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
Length = 358
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1ZKJ|A Chain A, Structural Basis For The Extended Substrate Spectrum Of
Cmy- 10, A Plasmid-encoded Class C Beta-lactamase
Length = 359
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 473 PIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFP 532
P+ V+A ++ L E +I G+ V KDG+ + G+ R V +LF
Sbjct: 8 PLRPVVDASIQPLLKEH----RIPGMAVAVLKDGKAHY-FNYGVANRESGAGVSEQTLFE 62
Query: 533 VFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSG 586
+ SV+K +TA + + V G ++L++ + P K + D I + + +++G
Sbjct: 63 IGSVSKTLTATLGAYAVVKGAMQLDDKASRHAPWLKGSAFDSITMGELATYSAG 116
>pdb|2FFY|B Chain B, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3IWO|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IWO|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IXH|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
pdb|3IXH|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
Length = 358
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3IWQ|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IWQ|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IXB|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
pdb|3IXB|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
Length = 358
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3IXD|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
pdb|3IXD|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
Length = 358
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|2P9V|A Chain A, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
Length = 358
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3FKV|A Chain A, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKV|B Chain B, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKW|A Chain A, Ampc K67r Mutant Apo Structure
pdb|3FKW|B Chain B, Ampc K67r Mutant Apo Structure
Length = 358
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV++ T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSRTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
pdb|1L0E|B Chain B, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
Length = 358
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV++ T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSQTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1KVL|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1L0G|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
Length = 358
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + V+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGGVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + V+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGDVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCM|B Chain B, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCN|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1O07|A Chain A, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
pdb|1O07|B Chain B, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
Length = 358
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K T + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSG 586
+T+G
Sbjct: 109 YTAG 112
>pdb|3IXG|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
pdb|3IXG|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
Length = 358
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 523 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 582
+PV +LF + SV+K + + G++KL + WPE + + I + H+
Sbjct: 49 QPVTQQTLFELGSVSKTFIGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 583 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG 633
+T+G L + P + + L P PG ++LY S G
Sbjct: 109 YTAG------GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG 153
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 240 SETVLILEFMDGIRLNDCESLEAFGVNKQKVVE---EITRAYAHQIYVDGFFNGDPHPGN 296
+E V+I EFM G L + + E +++ + VE ++ + H ++ + + + D P N
Sbjct: 227 NEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCH-MHENNYVHLDLKPEN 285
Query: 297 FLVSKDPPHRPILLDFGLTKKLS--SSMKQALAKMFFAA---AEGDHVALLSAFAEMGL 350
+ + + L+DFGLT L S+K FAA AEG V + +G+
Sbjct: 286 IMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGV 344
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 229 VDVLIPEV-IQSSETVLILEFMDGIRLND---CESLEAFGVNKQKVVEEITRAYAHQIYV 284
+DV P I+ V ++ + G LN+ C++L V Q +V ++ R + I+
Sbjct: 93 LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHV--QFLVYQLLRGLKY-IHS 149
Query: 285 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAE 335
G + D P N V++D R +LDFGL ++ M +A ++ A E
Sbjct: 150 AGIIHRDLKPSNVAVNEDSELR--ILDFGLARQADEEMTGYVATRWYRAPE 198
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 240 SETVLILEFMDGIRLNDCESLEAFGVNKQKVVE---EITRAYAHQIYVDGFFNGDPHPGN 296
+E V+I EFM G L + + E +++ + VE ++ + H ++ + + + D P N
Sbjct: 121 NEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCH-MHENNYVHLDLKPEN 179
Query: 297 FLVSKDPPHRPILLDFGLTKKLS--SSMKQALAKMFFAA---AEGDHVALLSAFAEMGL 350
+ + + L+DFGLT L S+K FAA AEG V + +G+
Sbjct: 180 IMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGV 238
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 229 VDVLIPE--VIQSSETVLILEFMDGIRLNDCESLEAFGVNK-QKVVEEITRAYAHQIYVD 285
+DV P+ + ++ L++ FM G L E G ++ Q +V ++ + + I+
Sbjct: 90 LDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRY-IHAA 147
Query: 286 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAE 335
G + D PGN V++D + +LDFGL ++ S M + ++ A E
Sbjct: 148 GIIHRDLKPGNLAVNEDCELK--ILDFGLARQADSEMXGXVVTRWYRAPE 195
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 229 VDVLIPEV-IQSSETVLILEFMDGIRLND---CESLEAFGVNKQKVVEEITRAYAHQIYV 284
+DV P I+ V ++ + G LN+ C++L V Q +V ++ R + I+
Sbjct: 85 LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALSDEHV--QFLVYQLLRGLKY-IHS 141
Query: 285 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAE 335
G + D P N V++D R +LDFGL ++ M +A ++ A E
Sbjct: 142 AGIIHRDLKPSNVAVNEDCELR--ILDFGLARQADEEMTGYVATRWYRAPE 190
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 241 ETVLILEFMDGIRLNDCESLEAFGVNKQKVVEEITRAYA--HQIYVDGFFNGDPHPGNFL 298
E VLILEF+ G L D + E + +++ +V+ + +A ++ + D P N +
Sbjct: 122 EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM 181
Query: 299 VSKDPPHRPILLDFGLTKKLSSS--MKQALAKMFFAAAE 335
++DFGL KL+ +K A FAA E
Sbjct: 182 CETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPE 220
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 229 VDVLIPEV-IQSSETVLILEFMDGIRLNDCESLEAFGVNK-QKVVEEITRAYAHQIYVDG 286
+DV P I+ V ++ + G LN+ +A Q +V ++ R + I+ G
Sbjct: 93 LDVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKY-IHSAG 151
Query: 287 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAE 335
+ D P N V++D R +LDFGL ++ M +A ++ A E
Sbjct: 152 IIHRDLKPSNVAVNEDSELR--ILDFGLARQADEEMTGYVATRWYRAPE 198
>pdb|3O3V|A Chain A, Crystal Structure Of Clbp Peptidase Domain
pdb|3O3V|B Chain B, Crystal Structure Of Clbp Peptidase Domain
pdb|3O3V|C Chain C, Crystal Structure Of Clbp Peptidase Domain
Length = 335
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 528 DSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSN--GKDL-IKVHHVLNHT 584
D+++ + S++K T ++ L+ G+L+ ++I PE + N GK + V L HT
Sbjct: 48 DTVYELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHT 107
Query: 585 SGLHNVSVDLSSENPL 600
SGL S ENP+
Sbjct: 108 SGLP-FSTLARLENPM 122
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 265 VNKQKVVEEITR---AYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL 318
V ++K++ I R + H ++ G + D P NFL S + L+DFGL+K+
Sbjct: 164 VQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEF 220
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 482 LRDFLVELGNDGKILGIQVCAYKDGEVI-IDTSAGMLGRYDPRPVQPDSLFPVFSVTKGI 540
+++ L + D K+ G + K GE I S G R + P + + F + S K
Sbjct: 3 MKNHLHTIMEDWKLSGTALM--KKGEDIPFIASLGFANRAERIPNEHHTRFGIASGCKLF 60
Query: 541 TAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGL 587
TA + LV+ GKL + +++ N + +HH+L HTSG+
Sbjct: 61 TAIAICQLVEAGKLSFDTPLSDWLDAPFPN----VTIHHLLTHTSGV 103
>pdb|3HLC|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus, S5
Mutant, Unliganded
pdb|3HLD|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant Complex With Monacolin J Acid
Length = 432
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 524 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPE---------FKSNG--- 571
P+Q D+ + S TK +T M+ ++ G + L+E + + P+ F G
Sbjct: 84 PLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 572 ----KDLIKVHHVLNHTSGLHNV 590
+ I + H+L HTSGL V
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYV 166
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 112 ESMGGMFMDFVETPLATASIAQVHRATLVDGRQVVVKVQHQGIKTIILED--LKNAKSIV 169
E+ GG +D V P+ + R +GR +VV GI TI + L+NA I
Sbjct: 221 EATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLI- 279
Query: 170 DWIAWAE 176
+AW E
Sbjct: 280 -GVAWGE 285
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 502 AYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITA-GMLH 546
Y+ G V +D + M+G Y PRP + + L PV KG+ A G H
Sbjct: 108 TYRTG-VKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYH 152
>pdb|3HLE|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Monacolin J Acid
pdb|3HLF|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Simvastatin
pdb|3HLG|A Chain A, Simvastatin Synthase (lovd), From Aspergillus Terreus, S5
Mutant, S76a Mutant, Complex With Lovastatin
Length = 432
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 524 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPE---------FKSNG--- 571
P+Q D+ + + TK +T M+ ++ G + L+E + + P+ F G
Sbjct: 84 PLQVDTPCRLAAATKLLTTIMVLQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 572 ----KDLIKVHHVLNHTSGLHNV 590
+ I + H+L HTSGL V
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYV 166
>pdb|3HL9|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HL9|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded
pdb|3HLB|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|B Chain B, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|C Chain C, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
pdb|3HLB|D Chain D, Simvastatin Synthase (Lovd) From Aspergillus Terreus,
Unliganded, Selenomethionyl Derivative
Length = 432
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 524 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPE---------FKSNG--- 571
P+Q D+ + S TK +T M ++ G + L+E + + P+ F G
Sbjct: 84 PLQVDTPCRLASATKLLTTIMALQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 572 ----KDLIKVHHVLNHTSGLHNV 590
+ I + H+L HTSGL V
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYV 166
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 502 AYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITA 542
Y+ G V IDT+ M+G Y PR + + L PV KG+ A
Sbjct: 68 TYRTG-VTIDTTDYMVGSYGPRAEEYEFLTPVEEAPKGMLA 107
>pdb|2DLA|A Chain A, Primase Large Subunit Amino Terminal Domain From
Pyrococcus Horikoshii
pdb|2DLA|B Chain B, Primase Large Subunit Amino Terminal Domain From
Pyrococcus Horikoshii
pdb|2DLA|C Chain C, Primase Large Subunit Amino Terminal Domain From
Pyrococcus Horikoshii
Length = 222
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 26/83 (31%)
Query: 33 WIKKSKISALWQRAHERNAKRVLNLIIKLEGLWVKLGQYLSTRADVLPEPYISLLKQLQD 92
++K+ + +W +A ERN +R +N++ ++ D LPE Y +L ++Q
Sbjct: 163 YLKREDLIRIWSKAFERNVERGVNMLYEIR--------------DELPEFYRKVLGEIQ- 207
Query: 93 SLPPRPVQEVSQTIEREFGESMG 115
E EFG G
Sbjct: 208 -----------AFAEEEFGRKFG 219
>pdb|1EI5|A Chain A, Crystal Structure Of A D-Aminopeptidase From Ochrobactrum
Anthropi
Length = 520
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 480 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 539
+ L F+ + + K G V KDGEV++ + G P+ D+ P+ SV+K
Sbjct: 7 SALEAFVRHIPQNYKGPGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQ 66
Query: 540 ITAGML 545
T +L
Sbjct: 67 FTCAVL 72
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 107 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 164
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 165 ARANXFVGTAQ 175
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 106 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 163
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 164 ARANXFVGTAQ 174
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 108 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 165
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 166 ARANXFVGTAQ 176
>pdb|3LET|A Chain A, Crystal Structure Of Fic Domain Containing Ampylator, Vops
pdb|3LET|B Chain B, Crystal Structure Of Fic Domain Containing Ampylator, Vops
Length = 314
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 527 PDSLFPVFSVTKGITAGMLHWLVD--NGKLKLEENIANIWPEFKSNGKDLIKVHHV 580
P+ F VT + W+++ N K ENI ++ E+ +NGKDL+ + ++
Sbjct: 156 PEDAFNKAGVTNNVERAAA-WIINASNSKGNDAENITSLLKEYATNGKDLLNMDNL 210
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D H I DFG K LS KQ
Sbjct: 113 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM-HIQIT-DFGTAKVLSPESKQ 170
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 171 ARANXFVGTAQ 181
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 109 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 166
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 167 ARANXFVGTAQ 177
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D H I DFG K LS KQ
Sbjct: 128 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM-HIQIT-DFGTAKVLSPESKQ 185
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 186 ARANXFVGTAQ 196
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 186
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 187 ARANXFVGTAQ 197
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 186
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 187 ARANXFVGTAQ 197
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D H I DFG K LS KQ
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM-HIQIT-DFGTAKVLSPESKQ 188
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 189 ARANXFVGTAQ 199
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 188
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 189 ARANXFVGTAQ 199
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 186
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 187 ARANAFVGTAQ 197
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 188
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 189 ARANXFVGTAQ 199
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 186
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 187 ARANXFVGTAQ 197
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 188
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 189 ARANXFVGTAQ 199
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 132 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 189
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 190 ARANXFVGTAQ 200
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 272 EEITRAYAHQI-------YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ 324
E TR Y +I + G + D P N L+++D + DFG K LS KQ
Sbjct: 136 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ 193
Query: 325 ALAKMFFAAAE 335
A A F A+
Sbjct: 194 ARANXFVGTAQ 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,329,808
Number of Sequences: 62578
Number of extensions: 818206
Number of successful extensions: 2193
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 84
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)