Query 006430
Match_columns 645
No_of_seqs 343 out of 2894
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 9E-113 2E-117 957.0 56.8 638 6-645 3-651 (868)
2 PLN02270 phospholipase D alpha 100.0 6E-100 1E-104 854.3 52.6 572 13-645 4-587 (808)
3 PLN02352 phospholipase D epsil 100.0 1E-92 2.2E-97 795.2 49.9 526 11-645 4-537 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 4.3E-83 9.4E-88 713.7 40.9 573 6-645 65-649 (887)
5 PLN02866 phospholipase D 100.0 8.9E-60 1.9E-64 537.9 32.8 368 203-644 321-814 (1068)
6 PRK12452 cardiolipin synthetas 100.0 1.3E-41 2.8E-46 380.1 26.5 269 203-636 131-400 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.2E-40 4.7E-45 369.4 27.6 266 203-635 107-373 (483)
8 PRK11263 cardiolipin synthase 100.0 5.8E-37 1.2E-41 333.7 26.8 259 207-636 3-262 (411)
9 COG1502 Cls Phosphatidylserine 100.0 7.4E-27 1.6E-31 258.3 25.7 265 209-633 57-325 (438)
10 PHA02820 phospholipase-D-like 100.0 7E-27 1.5E-31 255.7 23.2 260 242-638 26-288 (424)
11 PHA03003 palmytilated EEV memb 100.0 3.2E-27 7E-32 255.1 20.1 247 242-631 31-278 (369)
12 PRK09428 pssA phosphatidylseri 99.9 7.2E-27 1.6E-31 256.4 22.6 267 209-630 22-301 (451)
13 cd04015 C2_plant_PLD C2 domain 99.9 2.6E-22 5.5E-27 191.9 16.4 157 12-180 2-158 (158)
14 cd04016 C2_Tollip C2 domain pr 99.8 1.2E-19 2.6E-24 165.5 14.3 117 17-179 2-121 (121)
15 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.8E-18 3.9E-23 157.8 15.4 120 18-181 1-121 (121)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-18 3.7E-23 159.2 13.5 117 19-178 1-126 (126)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.2E-18 7E-23 157.2 14.6 114 19-175 2-125 (126)
18 cd04013 C2_SynGAP_like C2 doma 99.8 1.5E-17 3.3E-22 156.0 16.3 128 12-186 6-145 (146)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.4E-18 1.6E-22 154.0 13.8 99 80-179 22-121 (121)
20 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.5E-17 5.3E-22 151.6 15.7 102 80-182 22-125 (126)
21 cd08678 C2_C21orf25-like C2 do 99.7 3.1E-17 6.8E-22 150.8 14.8 105 80-184 18-124 (126)
22 cd04022 C2A_MCTP_PRT_plant C2 99.7 2.9E-17 6.2E-22 151.2 13.4 119 18-180 1-126 (127)
23 cd04019 C2C_MCTP_PRT_plant C2 99.7 4.3E-17 9.4E-22 154.5 14.2 122 18-182 1-134 (150)
24 cd08681 C2_fungal_Inn1p-like C 99.7 2.4E-17 5.2E-22 149.5 11.7 116 17-179 1-118 (118)
25 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.1E-16 2.5E-21 146.2 13.0 98 80-180 17-120 (121)
26 cd08377 C2C_MCTP_PRT C2 domain 99.7 3.5E-16 7.6E-21 141.9 14.9 117 17-179 1-118 (119)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.9E-16 4.2E-21 146.6 13.3 120 18-180 1-133 (133)
28 cd08376 C2B_MCTP_PRT C2 domain 99.7 5.1E-16 1.1E-20 140.4 15.6 113 18-180 1-115 (116)
29 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.2E-16 7E-21 143.1 14.1 117 19-178 2-120 (121)
30 cd04036 C2_cPLA2 C2 domain pre 99.7 3E-16 6.5E-21 142.7 13.8 113 19-179 2-117 (119)
31 cd08381 C2B_PI3K_class_II C2 d 99.7 1.9E-16 4.1E-21 145.0 12.2 106 11-159 7-121 (122)
32 cd04024 C2A_Synaptotagmin-like 99.7 3.4E-16 7.4E-21 143.7 13.7 120 17-179 1-128 (128)
33 cd04014 C2_PKC_epsilon C2 doma 99.7 5.6E-16 1.2E-20 143.6 15.0 127 15-182 2-131 (132)
34 cd04028 C2B_RIM1alpha C2 domai 99.7 3.8E-16 8.3E-21 146.8 13.8 112 8-161 18-138 (146)
35 cd04044 C2A_Tricalbin-like C2 99.7 4.6E-16 9.9E-21 142.0 12.9 121 17-181 2-124 (124)
36 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 6.3E-16 1.4E-20 141.4 13.2 118 18-178 1-123 (123)
37 cd08677 C2A_Synaptotagmin-13 C 99.7 3.2E-16 6.9E-21 141.5 10.5 102 13-159 10-118 (118)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 9.3E-16 2E-20 139.3 13.7 120 17-179 1-121 (121)
39 cd08395 C2C_Munc13 C2 domain t 99.7 7.1E-16 1.5E-20 140.5 11.6 99 18-159 1-110 (120)
40 cd08685 C2_RGS-like C2 domain 99.7 5E-16 1.1E-20 141.5 10.4 106 11-159 6-119 (119)
41 cd08375 C2_Intersectin C2 doma 99.6 2.9E-15 6.3E-20 139.7 14.8 116 15-179 13-135 (136)
42 cd04046 C2_Calpain C2 domain p 99.6 5.5E-15 1.2E-19 135.9 16.1 122 16-182 2-124 (126)
43 TIGR03705 poly_P_kin polyphosp 99.6 7.1E-15 1.5E-19 167.8 20.1 213 242-637 339-574 (672)
44 cd08373 C2A_Ferlin C2 domain f 99.6 4.4E-15 9.6E-20 136.6 14.7 103 80-185 15-121 (127)
45 PRK05443 polyphosphate kinase; 99.6 9.7E-15 2.1E-19 167.6 20.2 215 242-636 348-582 (691)
46 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.5E-15 5.4E-20 137.5 11.9 103 15-159 14-122 (124)
47 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.6E-15 3.4E-20 139.4 10.2 102 16-159 14-124 (125)
48 cd08387 C2A_Synaptotagmin-8 C2 99.6 2.4E-15 5.1E-20 137.8 11.2 104 15-160 14-123 (124)
49 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.5E-15 5.5E-20 138.1 11.3 104 15-159 13-124 (125)
50 cd04050 C2B_Synaptotagmin-like 99.6 4.2E-15 9E-20 132.2 12.3 97 19-160 2-101 (105)
51 cd08688 C2_KIAA0528-like C2 do 99.6 2.2E-15 4.7E-20 135.3 10.3 100 19-161 1-109 (110)
52 KOG1030 Predicted Ca2+-depende 99.6 1.5E-15 3.2E-20 142.6 9.4 96 14-152 3-99 (168)
53 cd04010 C2B_RasA3 C2 domain se 99.6 4E-15 8.7E-20 140.5 12.0 83 80-162 19-123 (148)
54 cd08392 C2A_SLP-3 C2 domain fi 99.6 2.7E-15 5.9E-20 138.4 10.6 102 16-159 14-127 (128)
55 cd04027 C2B_Munc13 C2 domain s 99.6 8.8E-15 1.9E-19 134.8 13.2 114 18-177 2-127 (127)
56 cd08690 C2_Freud-1 C2 domain f 99.6 1.3E-14 2.9E-19 137.6 14.3 98 80-180 25-137 (155)
57 cd08680 C2_Kibra C2 domain fou 99.6 4E-15 8.8E-20 136.4 10.5 103 15-159 12-124 (124)
58 cd04017 C2D_Ferlin C2 domain f 99.6 1.3E-14 2.9E-19 135.0 14.1 118 18-182 2-134 (135)
59 cd08382 C2_Smurf-like C2 domai 99.6 8.4E-15 1.8E-19 134.2 12.6 116 19-177 2-122 (123)
60 cd08394 C2A_Munc13 C2 domain f 99.6 8E-15 1.7E-19 133.7 12.2 97 17-160 2-100 (127)
61 cd04043 C2_Munc13_fungal C2 do 99.6 2.4E-14 5.2E-19 131.3 15.1 115 18-182 2-123 (126)
62 cd04030 C2C_KIAA1228 C2 domain 99.6 1.1E-14 2.3E-19 133.8 12.1 101 17-159 16-126 (127)
63 cd04045 C2C_Tricalbin-like C2 99.6 9.9E-15 2.1E-19 133.2 11.8 104 17-163 1-105 (120)
64 cd08383 C2A_RasGAP C2 domain ( 99.6 2.2E-14 4.7E-19 129.6 13.7 96 80-179 18-117 (117)
65 cd04051 C2_SRC2_like C2 domain 99.6 8.6E-15 1.9E-19 134.1 10.7 113 18-175 1-125 (125)
66 cd04031 C2A_RIM1alpha C2 domai 99.6 1.3E-14 2.9E-19 132.6 11.5 101 16-159 15-124 (125)
67 cd08521 C2A_SLP C2 domain firs 99.6 1.2E-14 2.5E-19 132.7 10.8 103 15-159 12-123 (123)
68 cd00138 PLDc Phospholipase D. 99.6 3.4E-14 7.5E-19 137.5 14.7 145 241-459 20-169 (176)
69 cd04041 C2A_fungal C2 domain f 99.6 1E-14 2.2E-19 131.1 9.6 98 17-159 1-106 (111)
70 cd08388 C2A_Synaptotagmin-4-11 99.6 3.9E-14 8.5E-19 130.7 12.7 102 16-159 15-126 (128)
71 cd04040 C2D_Tricalbin-like C2 99.6 4.6E-14 1E-18 127.2 12.8 111 19-174 1-113 (115)
72 cd08389 C2A_Synaptotagmin-14_1 99.6 3.8E-14 8.3E-19 130.1 12.4 100 17-159 16-122 (124)
73 cd08386 C2A_Synaptotagmin-7 C2 99.5 3.6E-14 7.9E-19 129.9 11.8 102 16-159 15-123 (125)
74 cd08407 C2B_Synaptotagmin-13 C 99.5 5.7E-15 1.2E-19 137.8 6.5 111 15-167 13-131 (138)
75 cd04018 C2C_Ferlin C2 domain t 99.5 2.2E-14 4.9E-19 135.8 10.6 116 18-162 1-126 (151)
76 cd04052 C2B_Tricalbin-like C2 99.5 4.6E-14 9.9E-19 126.9 11.8 99 78-182 11-111 (111)
77 cd08406 C2B_Synaptotagmin-12 C 99.5 8E-15 1.7E-19 136.7 6.5 107 15-165 13-127 (136)
78 cd04039 C2_PSD C2 domain prese 99.5 4.7E-14 1E-18 126.3 10.9 95 17-150 1-98 (108)
79 PHA03003 palmytilated EEV memb 99.5 4.8E-14 1E-18 152.7 13.2 146 243-459 217-363 (369)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.1E-14 2.5E-19 134.9 6.9 108 15-166 11-126 (133)
81 cd04049 C2_putative_Elicitor-r 99.5 5.5E-14 1.2E-18 128.7 11.3 100 17-159 1-106 (124)
82 cd08390 C2A_Synaptotagmin-15-1 99.5 8.2E-14 1.8E-18 127.1 11.6 102 16-159 13-121 (123)
83 cd04011 C2B_Ferlin C2 domain s 99.5 8.6E-14 1.9E-18 125.0 11.5 81 80-161 21-110 (111)
84 PRK12452 cardiolipin synthetas 99.5 3.2E-14 6.9E-19 159.9 10.2 153 228-461 330-482 (509)
85 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.7E-14 5.8E-19 133.1 7.8 107 15-165 13-127 (136)
86 KOG1028 Ca2+-dependent phospho 99.5 1.3E-13 2.8E-18 151.3 13.4 129 14-184 164-298 (421)
87 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 8E-14 1.7E-18 133.9 10.2 103 15-159 25-136 (162)
88 cd08675 C2B_RasGAP C2 domain s 99.5 1.2E-13 2.6E-18 129.0 11.1 100 19-161 1-120 (137)
89 cd08692 C2B_Tac2-N C2 domain s 99.5 3.4E-14 7.4E-19 131.3 7.3 111 13-166 10-128 (135)
90 KOG0696 Serine/threonine prote 99.5 1.2E-14 2.6E-19 152.1 4.8 108 12-162 175-289 (683)
91 PRK13912 nuclease NucT; Provis 99.5 5.4E-13 1.2E-17 130.1 15.3 141 242-460 33-175 (177)
92 cd08676 C2A_Munc13-like C2 dom 99.5 1.4E-13 3E-18 130.7 10.6 99 15-159 26-153 (153)
93 cd04026 C2_PKC_alpha_gamma C2 99.5 2.3E-13 5.1E-18 125.8 11.6 109 11-162 7-122 (131)
94 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.8E-14 1.3E-18 130.7 7.1 108 15-166 13-128 (136)
95 cd08402 C2B_Synaptotagmin-1 C2 99.5 3.9E-14 8.4E-19 131.9 5.9 108 14-165 12-127 (136)
96 cd08403 C2B_Synaptotagmin-3-5- 99.5 5.9E-14 1.3E-18 130.4 6.5 109 14-166 11-127 (134)
97 cd08409 C2B_Synaptotagmin-15 C 99.5 5.9E-14 1.3E-18 131.1 6.4 107 16-165 14-128 (137)
98 cd04021 C2_E3_ubiquitin_ligase 99.5 6.7E-13 1.5E-17 122.0 13.2 97 80-177 22-124 (125)
99 cd04038 C2_ArfGAP C2 domain pr 99.5 3.5E-13 7.5E-18 127.0 11.5 90 17-150 2-92 (145)
100 cd00276 C2B_Synaptotagmin C2 d 99.5 8.4E-14 1.8E-18 128.8 7.0 106 16-165 13-126 (134)
101 cd08410 C2B_Synaptotagmin-17 C 99.5 1E-13 2.2E-18 129.1 7.4 109 15-166 12-128 (135)
102 cd08408 C2B_Synaptotagmin-14_1 99.5 8.8E-14 1.9E-18 130.1 6.9 108 15-165 13-129 (138)
103 cd00275 C2_PLC_like C2 domain 99.5 9.6E-13 2.1E-17 120.7 13.6 116 18-179 3-127 (128)
104 cd04032 C2_Perforin C2 domain 99.4 6.1E-13 1.3E-17 122.4 10.8 92 13-148 24-118 (127)
105 cd08691 C2_NEDL1-like C2 domai 99.4 1.7E-12 3.8E-17 121.0 13.9 114 19-177 3-136 (137)
106 cd04009 C2B_Munc13-like C2 dom 99.4 6.8E-13 1.5E-17 123.2 11.1 91 17-149 16-118 (133)
107 PLN03200 cellulose synthase-in 99.4 2.7E-13 5.9E-18 167.6 9.1 125 9-181 1972-2101(2102)
108 cd04048 C2A_Copine C2 domain f 99.4 1.7E-12 3.7E-17 118.2 10.5 80 80-159 21-112 (120)
109 cd04037 C2E_Ferlin C2 domain f 99.4 1.8E-12 3.9E-17 118.9 10.4 117 18-181 1-120 (124)
110 cd04035 C2A_Rabphilin_Doc2 C2 99.4 5.5E-12 1.2E-16 115.3 11.4 100 16-157 14-121 (123)
111 cd08686 C2_ABR C2 domain in th 99.3 1E-11 2.3E-16 111.9 12.6 66 80-146 15-92 (118)
112 KOG2059 Ras GTPase-activating 99.3 9E-12 2E-16 137.6 9.3 127 16-186 4-131 (800)
113 PRK01642 cls cardiolipin synth 99.2 2.9E-11 6.2E-16 135.7 11.5 152 228-461 304-456 (483)
114 PF13091 PLDc_2: PLD-like doma 99.2 1.1E-10 2.5E-15 106.4 11.5 124 247-456 1-126 (126)
115 cd04047 C2B_Copine C2 domain s 99.2 9.6E-11 2.1E-15 104.8 10.0 70 80-150 21-101 (110)
116 PF00168 C2: C2 domain; Inter 99.1 1.3E-10 2.8E-15 97.7 8.1 81 19-141 1-85 (85)
117 cd00030 C2 C2 domain. The C2 d 99.1 5.7E-10 1.2E-14 95.3 10.1 80 80-159 20-102 (102)
118 PRK11263 cardiolipin synthase 99.1 5.1E-10 1.1E-14 122.7 11.5 144 231-457 195-340 (411)
119 KOG1011 Neurotransmitter relea 99.0 3.9E-10 8.5E-15 122.8 8.3 124 14-183 292-427 (1283)
120 smart00239 C2 Protein kinase C 99.0 1.3E-09 2.8E-14 93.7 9.8 72 80-151 21-96 (101)
121 KOG1031 Predicted Ca2+-depende 99.0 8.6E-10 1.9E-14 119.0 10.0 171 15-241 1-186 (1169)
122 PLN02223 phosphoinositide phos 99.0 2.7E-09 5.8E-14 118.1 14.0 96 80-179 435-536 (537)
123 KOG1028 Ca2+-dependent phospho 99.0 5.2E-10 1.1E-14 123.0 6.1 109 14-166 295-411 (421)
124 COG5038 Ca2+-dependent lipid-b 98.9 2.6E-09 5.6E-14 124.4 9.9 126 12-181 1035-1162(1227)
125 PLN02952 phosphoinositide phos 98.9 7.9E-09 1.7E-13 116.6 13.6 96 80-179 497-598 (599)
126 PHA02820 phospholipase-D-like 98.9 1.1E-08 2.3E-13 112.9 12.5 154 244-459 220-380 (424)
127 COG5038 Ca2+-dependent lipid-b 98.9 9.1E-09 2E-13 120.0 11.8 128 16-187 435-564 (1227)
128 cd08374 C2F_Ferlin C2 domain s 98.9 1.1E-08 2.4E-13 94.7 9.7 72 80-151 25-125 (133)
129 KOG0169 Phosphoinositide-speci 98.9 1.1E-08 2.3E-13 115.5 11.4 98 80-181 641-745 (746)
130 PLN02230 phosphoinositide phos 98.8 1.9E-08 4.1E-13 113.4 12.6 96 80-179 496-597 (598)
131 PLN02222 phosphoinositide phos 98.8 4.7E-08 1E-12 110.1 13.5 96 80-179 479-580 (581)
132 PLN02228 Phosphoinositide phos 98.8 5.6E-08 1.2E-12 109.2 13.7 99 80-182 458-563 (567)
133 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5E-08 1.1E-12 85.6 8.7 65 80-148 23-87 (109)
134 PF00614 PLDc: Phospholipase D 98.7 5.3E-09 1.1E-13 69.8 0.9 26 363-396 2-27 (28)
135 KOG3603 Predicted phospholipas 98.7 2.1E-06 4.6E-11 91.5 20.9 262 243-636 73-341 (456)
136 KOG3603 Predicted phospholipas 98.5 2.1E-06 4.6E-11 91.6 14.2 165 231-460 269-440 (456)
137 COG1502 Cls Phosphatidylserine 98.5 6.4E-07 1.4E-11 99.4 11.0 136 245-460 273-410 (438)
138 KOG1328 Synaptic vesicle prote 98.5 6.3E-08 1.4E-12 107.5 2.2 92 15-148 945-1048(1103)
139 KOG1264 Phospholipase C [Lipid 98.4 1.2E-06 2.6E-11 98.6 10.5 103 80-186 1085-1195(1267)
140 KOG1328 Synaptic vesicle prote 98.4 9.3E-08 2E-12 106.1 1.0 90 94-185 179-306 (1103)
141 KOG0905 Phosphoinositide 3-kin 98.1 1.8E-06 3.8E-11 100.6 5.0 108 10-159 1517-1633(1639)
142 KOG2059 Ras GTPase-activating 98.0 6.8E-06 1.5E-10 91.9 6.5 106 80-185 151-281 (800)
143 PRK09428 pssA phosphatidylseri 97.8 0.00015 3.2E-09 80.8 12.2 144 241-459 250-408 (451)
144 cd08683 C2_C2cd3 C2 domain fou 97.8 2.6E-05 5.6E-10 70.8 4.5 80 80-159 33-143 (143)
145 PF07894 DUF1669: Protein of u 97.6 0.0006 1.3E-08 70.5 12.5 155 209-458 116-280 (284)
146 KOG1013 Synaptic vesicle prote 97.6 9.5E-05 2.1E-09 76.6 5.3 103 15-161 231-341 (362)
147 smart00155 PLDc Phospholipase 97.5 6.7E-05 1.5E-09 50.2 2.8 24 364-395 3-26 (28)
148 KOG1011 Neurotransmitter relea 97.5 0.00025 5.4E-09 78.6 8.3 80 80-159 1145-1235(1283)
149 KOG2060 Rab3 effector RIM1 and 97.5 0.00013 2.9E-09 76.8 5.6 108 16-164 268-382 (405)
150 cd00138 PLDc Phospholipase D. 97.4 0.00033 7.1E-09 67.5 7.1 62 559-634 19-80 (176)
151 KOG3837 Uncharacterized conser 97.4 0.00013 2.8E-09 77.4 4.0 98 80-180 388-503 (523)
152 PRK13912 nuclease NucT; Provis 97.3 0.00053 1.2E-08 66.9 7.3 54 560-633 32-85 (177)
153 PF13918 PLDc_3: PLD-like doma 97.2 0.0012 2.6E-08 63.9 7.6 68 228-305 72-140 (177)
154 cd08684 C2A_Tac2-N C2 domain f 97.0 0.00049 1.1E-08 58.4 2.7 75 82-158 23-102 (103)
155 KOG1326 Membrane-associated pr 97.0 0.00045 9.7E-09 80.4 3.2 89 16-146 612-703 (1105)
156 KOG1013 Synaptic vesicle prote 97.0 0.00021 4.5E-09 74.2 0.3 128 17-186 93-235 (362)
157 PLN02964 phosphatidylserine de 96.8 0.0022 4.7E-08 73.9 7.1 86 80-165 68-157 (644)
158 TIGR03705 poly_P_kin polyphosp 96.7 0.01 2.2E-07 69.0 11.8 142 232-460 494-641 (672)
159 PRK05443 polyphosphate kinase; 96.7 0.0096 2.1E-07 69.6 11.3 136 239-461 510-650 (691)
160 PF13090 PP_kinase_C: Polyphos 96.6 0.085 1.8E-06 56.1 16.3 138 242-455 18-161 (352)
161 KOG1326 Membrane-associated pr 96.5 0.00058 1.3E-08 79.5 -0.8 132 80-218 227-369 (1105)
162 COG3886 Predicted HKD family n 96.1 0.077 1.7E-06 51.6 11.8 141 241-458 38-179 (198)
163 COG0855 Ppk Polyphosphate kina 96.1 0.37 8.1E-06 54.9 18.6 91 242-375 352-447 (696)
164 PF13091 PLDc_2: PLD-like doma 96.0 0.012 2.5E-07 53.3 5.5 46 566-631 1-46 (126)
165 KOG1265 Phospholipase C [Lipid 95.9 0.031 6.7E-07 64.8 9.5 100 14-165 700-809 (1189)
166 PF12416 DUF3668: Cep120 prote 95.7 0.13 2.9E-06 55.1 12.6 104 80-184 18-136 (340)
167 PF11495 Regulator_TrmB: Archa 95.2 0.084 1.8E-06 53.8 8.8 50 241-307 9-58 (233)
168 KOG1327 Copine [Signal transdu 95.2 0.036 7.9E-07 61.9 6.5 83 80-164 157-250 (529)
169 PF13918 PLDc_3: PLD-like doma 94.2 0.44 9.5E-06 46.3 10.5 66 563-637 84-150 (177)
170 PF10358 NT-C2: N-terminal C2 94.2 1.5 3.3E-05 40.7 14.0 102 81-186 25-141 (143)
171 KOG1329 Phospholipase D1 [Lipi 93.6 0.46 1E-05 56.0 11.0 27 366-400 702-728 (887)
172 cd08398 C2_PI3K_class_I_alpha 93.5 1.9 4.1E-05 41.4 13.2 68 80-148 26-107 (158)
173 PF15627 CEP76-C2: CEP76 C2 do 93.3 0.85 1.8E-05 43.5 10.4 102 81-183 33-153 (156)
174 PF15625 CC2D2AN-C2: CC2D2A N- 91.7 0.8 1.7E-05 44.3 8.3 83 66-148 23-107 (168)
175 PLN02270 phospholipase D alpha 91.6 1.4 2.9E-05 52.2 11.4 65 241-305 498-569 (808)
176 KOG1452 Predicted Rho GTPase-a 91.3 0.59 1.3E-05 48.8 7.1 126 8-181 42-168 (442)
177 PLN03008 Phospholipase D delta 91.3 0.27 5.9E-06 58.0 5.3 60 243-305 568-633 (868)
178 PLN02866 phospholipase D 91.2 0.42 9.1E-06 57.6 6.9 60 560-626 343-402 (1068)
179 cd08693 C2_PI3K_class_I_beta_d 90.4 1.3 2.9E-05 43.0 8.5 51 80-130 27-86 (173)
180 cd08380 C2_PI3K_like C2 domain 89.0 2.3 5E-05 40.4 8.9 69 80-148 28-108 (156)
181 cd08687 C2_PKN-like C2 domain 88.2 3.4 7.4E-05 35.8 8.2 84 80-179 9-92 (98)
182 KOG3964 Phosphatidylglycerolph 87.5 0.55 1.2E-05 50.5 3.7 130 241-400 38-172 (469)
183 PLN02352 phospholipase D epsil 85.9 1.8 4E-05 50.9 7.2 65 559-626 185-249 (758)
184 cd08397 C2_PI3K_class_III C2 d 85.5 2.8 6.1E-05 40.2 7.2 69 79-147 29-107 (159)
185 PF11495 Regulator_TrmB: Archa 85.1 1.8 3.9E-05 44.1 6.0 51 559-629 8-58 (233)
186 cd08695 C2_Dock-B C2 domains f 83.6 7.2 0.00016 38.5 9.2 54 91-144 52-111 (189)
187 cd04012 C2A_PI3K_class_II C2 d 82.5 7.8 0.00017 37.5 9.0 69 80-148 29-120 (171)
188 PF00792 PI3K_C2: Phosphoinosi 82.4 11 0.00024 35.1 9.7 68 81-148 3-86 (142)
189 PF14429 DOCK-C2: C2 domain in 81.6 3.7 8E-05 40.1 6.4 55 92-146 59-120 (184)
190 PF11618 DUF3250: Protein of u 78.8 17 0.00036 32.6 9.0 93 83-179 2-104 (107)
191 cd08399 C2_PI3K_class_I_gamma 77.1 20 0.00043 35.1 9.8 100 82-185 32-143 (178)
192 PF07894 DUF1669: Protein of u 75.3 5.8 0.00013 41.5 5.8 51 560-630 133-184 (284)
193 cd08694 C2_Dock-A C2 domains f 70.6 8.8 0.00019 38.0 5.6 55 91-145 52-114 (196)
194 KOG0694 Serine/threonine prote 64.7 3 6.5E-05 48.1 1.1 96 80-184 28-125 (694)
195 KOG3964 Phosphatidylglycerolph 63.5 12 0.00026 40.7 5.2 54 561-630 39-92 (469)
196 cd08696 C2_Dock-C C2 domains f 59.7 21 0.00046 34.9 5.9 40 92-131 54-96 (179)
197 cd08679 C2_DOCK180_related C2 58.2 23 0.00049 34.5 5.9 52 94-146 55-115 (178)
198 KOG4269 Rac GTPase-activating 56.7 37 0.0008 40.6 8.0 100 80-187 775-889 (1112)
199 cd08697 C2_Dock-D C2 domains f 56.4 53 0.0012 32.3 8.1 40 91-130 55-97 (185)
200 smart00142 PI3K_C2 Phosphoinos 54.6 76 0.0016 27.7 8.1 51 80-130 32-91 (100)
201 cd05137 RasGAP_CLA2_BUD2 CLA2/ 52.7 18 0.00038 40.0 4.5 49 136-186 1-50 (395)
202 KOG1327 Copine [Signal transdu 44.8 27 0.00057 39.7 4.4 59 92-150 41-105 (529)
203 PTZ00447 apical membrane antig 33.7 3E+02 0.0065 29.7 9.7 94 80-178 74-171 (508)
204 COG1489 SfsA DNA-binding prote 29.0 1.9E+02 0.0041 29.6 7.1 56 245-305 155-212 (235)
205 TIGR00230 sfsA sugar fermentat 24.7 2.2E+02 0.0047 29.2 6.8 22 284-305 192-213 (232)
206 PF14924 DUF4497: Protein of u 23.7 1.9E+02 0.0041 25.8 5.6 58 120-180 29-104 (112)
207 KOG3543 Ca2+-dependent activat 23.4 4.8E+02 0.01 30.4 9.6 104 13-164 337-444 (1218)
208 COG1378 Predicted transcriptio 21.7 2E+02 0.0043 29.6 6.0 52 559-630 118-169 (247)
209 PF13090 PP_kinase_C: Polyphos 20.8 1.1E+02 0.0023 33.2 3.8 35 606-642 51-85 (352)
210 PF06219 DUF1005: Protein of u 20.7 6.7E+02 0.015 28.0 9.7 62 120-181 95-168 (460)
211 COG1184 GCD2 Translation initi 20.4 94 0.002 33.0 3.3 46 284-342 129-174 (301)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=8.9e-113 Score=957.00 Aligned_cols=638 Identities=73% Similarity=1.237 Sum_probs=558.8
Q ss_pred CCCCceeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEE
Q 006430 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (645)
Q Consensus 6 ~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (645)
+.-++++.++||+|+++|.+|++||+|++.+++++++|..|..|.....+-.......|...-+++-..+..+++||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 34578899999999999999999999999999899999877766543221111122222222223334566788999999
Q ss_pred EEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 86 v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
|.++++++.||+|++++.||+|||+|.|.+.++.+.|.|+|||+|.+++++||++.||++++..|+..+.|++|++..++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99988878899999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEeecccccCCCCCceecCCCCccCCcchHH
Q 006430 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (645)
Q Consensus 166 ~~~~~g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~ 245 (645)
+.+.+++|+|+|+|.|....+.|..|++++|+++||+.++||.+.|++|+||.|+++.+++.|.+.|++|+.|++..||+
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCcccc
Q 006430 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (645)
Q Consensus 246 ~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~ 325 (645)
+|+.||.+||++|||++|+++|.++|+|++.. |.+...+|.++|++||++||+|+||+||+..|...++++..|+|.+
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999999998752 2223589999999999999999999999999887778899999999
Q ss_pred ChHHHHhhhcCCCceEEeccCCCCCCccceeee-----------eecceeeccceEEEeccCCCCCCcceEEEEccccCC
Q 006430 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (645)
Q Consensus 326 ~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~-----------~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~ 394 (645)
|++++++++++.+|.|.++|+++....+++++. ...+.++||||+||||+++++.+++.+|||||+|||
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999999887777777652 234679999999999998778899999999999999
Q ss_pred CCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccchhhhhhccccc
Q 006430 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (645)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~ 474 (645)
++||||++|++++++++.+++||+||++.++.+.+++||||+|++|+||+|.+|+.+|.+||+.+++.+++.+..++...
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999987777889999999999999999999999999999999986544444455556
Q ss_pred ccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhcccccccc
Q 006430 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (645)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~ 554 (645)
|.+|.|+++.++++++.|......++....+...+.+...+..++++|.+|++||++.|+++++|+++.+.+.+++.+++
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk 560 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK 560 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence 77888998888888776543211111111111111111111245688999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC
Q 006430 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (645)
Q Consensus 555 ~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~ 634 (645)
+...|.||+++|++||++||||||||||||+++.++|+++.+.++.|+|+++|+.+|++|++++++|+|+||+|++|+|+
T Consensus 561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~ 640 (868)
T PLN03008 561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGD 640 (868)
T ss_pred ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccC
Q 006430 635 PKTNTVQEILF 645 (645)
Q Consensus 635 ~~~~~~~~~~~ 645 (645)
|++.++|+||+
T Consensus 641 ~~sg~vq~Il~ 651 (868)
T PLN03008 641 PKSGPVQEILY 651 (868)
T ss_pred CCcchHHHHHH
Confidence 99999999984
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=6.3e-100 Score=854.26 Aligned_cols=572 Identities=48% Similarity=0.852 Sum_probs=501.9
Q ss_pred EEEceEEEEEEEEeeCCCCCCCCchhhhhccccccc-CCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe
Q 006430 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDV-CKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (645)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (645)
.++||+|+|+|.+|++|++++. ...++.++..+.. |.. ..+++||||+|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGV------------------------GKGESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccC------------------------CCCCCCceEEEEeCCc
Confidence 4899999999999999998544 3344444332221 111 1135899999999999
Q ss_pred eeeeeccccCC-CCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCC
Q 006430 92 TVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (645)
Q Consensus 92 ~~~kT~v~~~t-~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~ 170 (645)
++.||+|+.+. .||+|+|+|.+++.+..+.|.|.|+|.+.++..+||.+.||+.++..|+.+++||++++..|++.+.+
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 99999999984 69999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHH
Q 006430 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (645)
Q Consensus 171 g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~a 250 (645)
.+|+++++|.|....+.|..|+++ ++++||+.++||.+.|++|+||.|+|+.+++.|.+.|.+|+.|++..||+++++|
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 999999999999999999999976 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHH
Q 006430 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (645)
Q Consensus 251 I~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~ 330 (645)
|.+||++|||++|.|++.++|+|++.++.+.+ ..+|.++|++||++||+|+||+||+..+... ++..|+|.++++++
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 99999999999999999999999765444433 6799999999999999999999999876542 45678899999999
Q ss_pred HhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCC---CCCCcceEEEEccccCCCCCCCCCCcCCcC
Q 006430 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (645)
Q Consensus 331 ~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~---~~~~~~~vafvGG~ni~~~r~d~~~H~~~~ 407 (645)
++++++.+|+|.++|++|..+.+++++...+..++||||+||||+++ .+++++.+|||||+|||++||||++|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 99999999999999999876666666556677899999999999973 346889999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccchhhhhhccccccccccccccc
Q 006430 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (645)
Q Consensus 408 ~~~~~~~~d~~n~~~~~---~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (645)
++++.+..||+||.+.+ +.+.+|+||||+|++|+||+|.+|+.+|.+||+.+++.. .+....
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999998753 567789999999999999999999999999999988763 111122
Q ss_pred ccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhHHHH
Q 006430 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (645)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ 564 (645)
+.+++..|.. | .++ +.+.+.|.+|++||++.+..+++|+++++.+.+|++++++...+++|++
T Consensus 440 ~~~~~~~P~~----------~--~~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------P--VMF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------c--ccC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222211110 0 001 2345789999999999999999999999888899999988888999999
Q ss_pred HHHHHHHhccceEEEeeeeecccccCCCcc----cCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCcccc
Q 006430 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (645)
Q Consensus 565 ~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~----~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~~~~~~ 640 (645)
+|+.||++||||||||||||+++.++|+++ ++.++.|+|+++|+.+|+++++++++|+|+||+|++|+|++++.++
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999999876 7788999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 006430 641 QEILF 645 (645)
Q Consensus 641 ~~~~~ 645 (645)
|+||+
T Consensus 583 q~il~ 587 (808)
T PLN02270 583 QAILD 587 (808)
T ss_pred HHHHH
Confidence 99985
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1e-92 Score=795.17 Aligned_cols=526 Identities=44% Similarity=0.778 Sum_probs=446.7
Q ss_pred eeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC
Q 006430 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (645)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (645)
+--++||+|+++|.+|+ + ++.+|..+..|... .||||+|.+++
T Consensus 4 ~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~ 46 (758)
T PLN02352 4 KQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGN 46 (758)
T ss_pred cccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCC
Confidence 34579999999999998 2 22333322222211 49999999999
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCCCeeeeeEeeccccccCCce-eEEEEEccCCCCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPK 168 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~-~~~w~~l~~~~~~~~~ 168 (645)
.++.|| .+..||+|+|+|.+++.+.. +.|.|+|+| +..+||.+.||+.++..|+. +++||++++..+++.+
T Consensus 47 ~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~ 119 (758)
T PLN02352 47 KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP 119 (758)
T ss_pred cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence 999999 66679999999999999998 789999998 57899999999999998866 9999999999999875
Q ss_pred CCceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHH
Q 006430 169 PGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248 (645)
Q Consensus 169 ~~g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~ 248 (645)
. .+|+++++|.|.+..+.|..|+++ +++.||+.++||.+.|++|++|.|+++.+++.|.+.| -|...++|++|+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~ 193 (758)
T PLN02352 120 E-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVY 193 (758)
T ss_pred C-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHH
Confidence 4 799999999999999999999977 7999999999999999999999999999999999988 444578999999
Q ss_pred HHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChH
Q 006430 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDE 328 (645)
Q Consensus 249 ~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~ 328 (645)
+||++||++|||++|+|+++++|+|++.++.|.+.+.+|.++|++||++||+||||+||+.+|... ++..|+|.++++
T Consensus 194 eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~ 271 (758)
T PLN02352 194 KAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDE 271 (758)
T ss_pred HHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchH
Confidence 999999999999999999999999987543333335899999999999999999999999987643 466778888889
Q ss_pred HHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCC--CCCcceEEEEccccCCCCCCCCCCcCCc
Q 006430 329 ETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS--GNNRKITAFIGGIDLCDGRYDTPEHRLF 406 (645)
Q Consensus 329 ~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~--~~~~~~vafvGG~ni~~~r~d~~~H~~~ 406 (645)
++.+++++.+|.|.+.|+++.. .+..++||||+||||+..+ +..++.+|||||+|||++||||++|+++
T Consensus 272 ~~~~~f~h~~V~~~l~pr~~~~---------~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~ 342 (758)
T PLN02352 272 DAFAYFKHTKVVCKLCPRLHKK---------FPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLF 342 (758)
T ss_pred HHHhhccCCceEEeeccccccc---------cccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcc
Confidence 9999999999999988766532 2467899999999999732 3577889999999999999999999999
Q ss_pred CCCCcc-ccCCCCCCCCC---CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccchhhhhhccccccccccccc
Q 006430 407 RDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIK 482 (645)
Q Consensus 407 ~~~~~~-~~~d~~n~~~~---~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~ 482 (645)
|.+++. +.+||+|+.+. .+.+.+|+||||+||+|+||||+||..+|.+|||++++.. .++.
T Consensus 343 d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~p 407 (758)
T PLN02352 343 RTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVP 407 (758)
T ss_pred cccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccCC
Confidence 988875 55899999875 3567789999999999999999999999999999987652 1111
Q ss_pred ccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhHH
Q 006430 483 IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI 562 (645)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI 562 (645)
..+..++.. +|. ....+.+.|.+|++||++.+++.++|+. ...|+||
T Consensus 408 ~~~~~~~~~------------~p~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erSI 454 (758)
T PLN02352 408 TSSIRNLVH------------QPG-------SSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSI 454 (758)
T ss_pred ccccccccc------------CCC-------CCcccCCcccceEEEecCccccccCCCC--------------CchhhHH
Confidence 111111000 011 0012457899999999988887777642 2358999
Q ss_pred HHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCcccccc
Q 006430 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQE 642 (645)
Q Consensus 563 ~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~~~~~~~~ 642 (645)
+++|++||++||||||||||||+++.++|+++++.++.|+|+++|+++|++|+++|++|+|+||+|++|+|.+++.++|+
T Consensus 455 q~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~ 534 (758)
T PLN02352 455 HEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQD 534 (758)
T ss_pred HHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006430 643 ILF 645 (645)
Q Consensus 643 ~~~ 645 (645)
||+
T Consensus 535 il~ 537 (758)
T PLN02352 535 ILH 537 (758)
T ss_pred HHH
Confidence 984
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-83 Score=713.66 Aligned_cols=573 Identities=41% Similarity=0.683 Sum_probs=485.1
Q ss_pred CCCCceeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEE
Q 006430 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (645)
Q Consensus 6 ~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (645)
.+.+..+.++||+|.++|..+..++.+..+..|.+..+.++..|........--...+|.+.+. .++-++..+.++|+.
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~e~Ylt 143 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSL-NSSMEKRKTLENYLT 143 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCc-ccchhhhhhccchhe
Confidence 3455667899999999999999999888877777777777666555443322222344444322 112334455899999
Q ss_pred EEECCeeeeeeccccCC-CCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCC
Q 006430 86 VVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (645)
Q Consensus 86 v~l~~~~~~kT~v~~~t-~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~ 163 (645)
+.+......+|.+..+. .+|.|.+.|.+.......-+.+.+.+.+..+ ...+|.+.+++..+..+....+|++++..+
T Consensus 144 ~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d 223 (887)
T KOG1329|consen 144 VVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDND 223 (887)
T ss_pred eeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccC
Confidence 99998888899999887 8999999999999988888999999999999 999999999999999889999999999988
Q ss_pred CCCCCCCceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEeecccccCCCCCceecCCCC-ccCCcc
Q 006430 164 GSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGT 242 (645)
Q Consensus 164 ~~~~~~~g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~-~y~~~~ 242 (645)
+++.+.+..+.+++.|.+......+.-+..+++...+++.+.++.+.+..+++|.+.+.-+++.|+..+++|+ -|+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~ 303 (887)
T KOG1329|consen 224 GKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKK 303 (887)
T ss_pred CccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhh
Confidence 8888777788899999999999999999999999999999999999999999999999999999999999999 778888
Q ss_pred hHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCc
Q 006430 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (645)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~ 322 (645)
+|+++++||++||+.|||++|+++|+++|+|+...+ ...||.++|++||++||+|+||+||++.+...
T Consensus 304 ~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~-------- 371 (887)
T KOG1329|consen 304 YWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG-------- 371 (887)
T ss_pred HHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------
Confidence 999999999999999999999999999999987632 25899999999999999999999999987542
Q ss_pred cccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCC
Q 006430 323 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPE 402 (645)
Q Consensus 323 ~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~ 402 (645)
++++..+...+++|.+|+|.++|+++.++. ...|+||||+||||.+ +||+||+|||+|||||++
T Consensus 372 i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~e 435 (887)
T KOG1329|consen 372 INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPE 435 (887)
T ss_pred cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcc
Confidence 235677888889999999999998876521 2478999999999998 999999999999999999
Q ss_pred cCCcCCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccchhhhhhcccccccc
Q 006430 403 HRLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477 (645)
Q Consensus 403 H~~~~~~~~~~~~d~~n~~~~-----~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~ 477 (645)
|+++|++.+++++||+||++. ++.+.|||||||+||+|.||+|+|+++||+||||++...+. + .+
T Consensus 436 H~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----~-----~~ 505 (887)
T KOG1329|consen 436 HPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----P-----YD 505 (887)
T ss_pred ccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----C-----CC
Confidence 999999999999999999986 68899999999999999999999999999999999876530 0 01
Q ss_pred cccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCcc
Q 006430 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVV 557 (645)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 557 (645)
+ .++.+.+++.. ..|.. + ...++..|.+|+.+|++.+++.+ +....+.|+++++...
T Consensus 506 ~------~~p~L~p~~~~-------~~~~~---~---~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~ 562 (887)
T KOG1329|consen 506 D------SLPLLLPISDI-------TGPSE---P---NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINE 562 (887)
T ss_pred c------cceeecChhhh-------cCCCC---c---cccccccccccceeeccCCcccc----hHHhhhhcccccCCCc
Confidence 1 12222222221 11211 0 23566889999999998887654 2344478999999988
Q ss_pred chhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--
Q 006430 558 IDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG-- 633 (645)
Q Consensus 558 ~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p--~~-- 633 (645)
.|+||++||+++|++||||||||||||+++.+.|. .+.|+++++|+++|++|.|+|+.|+|+||+|++| ||
T Consensus 563 ~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~ 637 (887)
T KOG1329|consen 563 IEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDD 637 (887)
T ss_pred hHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCC
Confidence 99999999999999999999999999999976553 4689999999999999999999999999999999 99
Q ss_pred CCCccccccccC
Q 006430 634 DPKTNTVQEILF 645 (645)
Q Consensus 634 ~~~~~~~~~~~~ 645 (645)
.|+.+++|+||.
T Consensus 638 ~p~~~svqaIl~ 649 (887)
T KOG1329|consen 638 TPGSGSVQAILH 649 (887)
T ss_pred CCCcchHHHHHH
Confidence 999999999983
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=8.9e-60 Score=537.92 Aligned_cols=368 Identities=30% Similarity=0.506 Sum_probs=261.9
Q ss_pred ccccccc----cCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCC
Q 006430 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (645)
Q Consensus 203 ~s~~P~~----~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~ 278 (645)
.+++|++ .+|.+++|+|| +++|.+|++||++||++|+|++|+|+|.+||+|+..
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 4677777 68999999999 689999999999999999999999999999998532
Q ss_pred CCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhh--cCCCceEEeccCCCCCCcccee
Q 006430 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (645)
Q Consensus 279 ~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~~~~~~~~~~~~~ 356 (645)
.+.+.+|.++|++||++||+||||+||.+|+.... . +....+.+ .++||+|..+|....
T Consensus 379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~P~~~~------- 439 (1068)
T PLN02866 379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRYPDHFS------- 439 (1068)
T ss_pred --CchHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEecCcccc-------
Confidence 11248999999999999999999999998643211 0 01112222 368999864332110
Q ss_pred eeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCcccc-CCCCCCCCC------------
Q 006430 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFK-DDFHNPTYP------------ 423 (645)
Q Consensus 357 ~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~-~d~~n~~~~------------ 423 (645)
...+++|||||++|||++ +||+||+|||.|||||++|++.|+...+|+ +||+|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 124689999999999998 999999999999999999999987666555 799998753
Q ss_pred -CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccch---hhhhh-------------cccc------cccc---
Q 006430 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTE---LTFKF-------------KRVS------HWRD--- 477 (645)
Q Consensus 424 -~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~---~~~~~-------------~~~~------~~~~--- 477 (645)
|+...+|+||||+|++|+||+|++|+++|++|||++++.+. ..+-+ +... ....
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~ 589 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQ 589 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccc
Confidence 45677889999999999999999999999999999987640 00000 0000 0000
Q ss_pred ------ccc---ccccccccccCccccc--c----------------------CC-CccccCC-------CCcc------
Q 006430 478 ------DYL---IKIGRISWILSPELSL--K----------------------TN-GTTIVPR-------DDNV------ 510 (645)
Q Consensus 478 ------~~l---~~~~~~~~~~~~~~~~--~----------------------~~-~~~~~p~-------~~~~------ 510 (645)
+.+ ...+.++.+++.+... . .. .....|. .+..
T Consensus 590 ~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 669 (1068)
T PLN02866 590 KGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSV 669 (1068)
T ss_pred ccccccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0001122222111000 0 00 0000000 0000
Q ss_pred ----------------c-------------ccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhH
Q 006430 511 ----------------V-------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 561 (645)
Q Consensus 511 ----------------~-------------~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~s 561 (645)
. ........+++.+||+||+..++. +....|+|
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~------------------G~~~~E~S 731 (1068)
T PLN02866 670 KMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSA------------------GTSQVEES 731 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccC------------------CCCchHHH
Confidence 0 000012245689999999755443 22246899
Q ss_pred HHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCC---C
Q 006430 562 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP---K 636 (645)
Q Consensus 562 I~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~--~~~---~ 636 (645)
|++||+++|++|+||||||||||++... .+..+.|+|+++|+++|++|+++|++|+|+||||.+|+ |.+ .
T Consensus 732 I~~AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~ 806 (1068)
T PLN02866 732 IHAAYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGG 806 (1068)
T ss_pred HHHHHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCcc
Confidence 9999999999999999999999999852 25678999999999999999999999999999999996 444 4
Q ss_pred cccccccc
Q 006430 637 TNTVQEIL 644 (645)
Q Consensus 637 ~~~~~~~~ 644 (645)
+.++|.||
T Consensus 807 ~~svr~Im 814 (1068)
T PLN02866 807 AASVRAIM 814 (1068)
T ss_pred chhHHHHH
Confidence 56888887
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.3e-41 Score=380.08 Aligned_cols=269 Identities=22% Similarity=0.325 Sum_probs=208.8
Q ss_pred ccccccccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCC
Q 006430 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (645)
Q Consensus 203 ~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g 282 (645)
.+.+|++.+|.+++|+|| +++|++++++|++||++|+|++|+|.+ +. .|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKS-------DE----IG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeC-------Cc----HH
Confidence 467899999999999999 689999999999999999999999966 22 44
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCCCceEEe-ccCCCCCCccceeeeeec
Q 006430 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVG 361 (645)
Q Consensus 283 ~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~-~~~~~~~~~~~~~~~~~~ 361 (645)
..+.++|++||+|||+|||| +|+.||... ++...+.|+++||+|.. .|.... ++ ..+
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~~----~~---~~~ 237 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFSA----WL---LET 237 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCcccc----cc---ccc
Confidence 79999999999999999999 599998632 35678889999999983 333211 11 235
Q ss_pred ceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 006430 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (645)
Q Consensus 362 ~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~ 441 (645)
.|+|||||++||||+ +||+||+|+++ +|.+. ....++|||+|++++
T Consensus 238 ~n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~-------------------------~~~~~~WrD~~~~i~ 283 (509)
T PRK12452 238 VNYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGR-------------------------SKKFPVWRDSHLKVE 283 (509)
T ss_pred ccCCCCCeEEEEcCC--------EEEeCCcccch-hhcCC-------------------------CCCCCCceEEEEEEE
Confidence 789999999999998 99999999999 45432 123569999999999
Q ss_pred ChHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCc
Q 006430 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (645)
Q Consensus 442 Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (645)
||+|.+++..|.++|+.+++... ..+.... ..+ ...|.. ....+.
T Consensus 284 Gp~V~~l~~~F~~dW~~~~~~~~---------------~~~~~~~---~~~---------~~~~~~--------~~~~~~ 328 (509)
T PRK12452 284 GKALYKLQAIFLEDWLYASSGLN---------------TYSWDPF---MNR---------QYFPGK--------EISNAE 328 (509)
T ss_pred CHHHHHHHHHHHHHHHHhhCccc---------------ccccccc---cch---------hcCCCc--------cccCCC
Confidence 99999999999999998765310 0000000 000 001110 011244
Q ss_pred eeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCC
Q 006430 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (645)
Q Consensus 522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n 601 (645)
..+|++.+ ||.. .+.+++++|+.+|.+||++|||+||||+|+.
T Consensus 329 ~~~q~~~s---gp~~---------------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~------------- 371 (509)
T PRK12452 329 GAVQIVAS---GPSS---------------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ------------- 371 (509)
T ss_pred eEEEEEeC---CCCc---------------------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-------------
Confidence 57899998 3211 1468999999999999999999999999983
Q ss_pred chHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCC
Q 006430 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDPK 636 (645)
Q Consensus 602 ~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~~ 636 (645)
.++++|..|++|||+ |+||+|..+|+...
T Consensus 372 ----~l~~aL~~Aa~rGV~--Vrii~p~~~D~~~~ 400 (509)
T PRK12452 372 ----ETLTLLRLSAISGID--VRILYPGKSDSIIS 400 (509)
T ss_pred ----HHHHHHHHHHHcCCE--EEEEcCCCCChHHH
Confidence 899999999999987 88999999987544
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.2e-40 Score=369.41 Aligned_cols=266 Identities=22% Similarity=0.325 Sum_probs=206.6
Q ss_pred ccccccccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCC
Q 006430 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (645)
Q Consensus 203 ~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g 282 (645)
.+.+|++.+|.+++|.+| +++|++|+++|++||++|+|++|+|.+ +. .|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d~----~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------DG----LG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------CC----cH
Confidence 567899999999999999 689999999999999999999999865 32 34
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCCCceEEec-cCCCCCCccceeeeeec
Q 006430 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG 361 (645)
Q Consensus 283 ~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~-~~~~~~~~~~~~~~~~~ 361 (645)
.++.++|++||+|||+|||| +|.+|+.... .+.+.+.|+++||++... |....+ ++ ..+
T Consensus 156 --~~i~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~~---~~---~~~ 215 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLGR---VF---RRR 215 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCccc---cc---ccc
Confidence 89999999999999999999 6999986421 233777899999999842 321111 11 235
Q ss_pred ceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 006430 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (645)
Q Consensus 362 ~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~ 441 (645)
.++|||||++||||+ +||+||+|+++.+|.+. ....++|||+|++++
T Consensus 216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~ 262 (483)
T PRK01642 216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIE 262 (483)
T ss_pred cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEE
Confidence 688999999999998 99999999999334321 123569999999999
Q ss_pred ChHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCc
Q 006430 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (645)
Q Consensus 442 Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (645)
||+|.+++..|.++|+.+++... . ... +.. ..++ ....++
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~~~----------------~--~~~-----~~~--------~~~~---------~~~~~~ 302 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGERI----------------L--PPP-----PDV--------LIMP---------FEEASG 302 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCccc----------------C--CCC-----ccc--------ccCC---------ccCCCC
Confidence 99999999999999998765410 0 000 000 0000 011234
Q ss_pred eeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCC
Q 006430 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (645)
Q Consensus 522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n 601 (645)
..+|++.+ ||. . .+..++++|+.+|.+||++|||+||||+|+.
T Consensus 303 ~~~qi~~s---gP~-----~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~------------- 345 (483)
T PRK01642 303 HTVQVIAS---GPG-----D----------------PEETIHQFLLTAIYSARERLWITTPYFVPDE------------- 345 (483)
T ss_pred ceEEEEeC---CCC-----C----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH-------------
Confidence 57899987 321 1 1467999999999999999999999999983
Q ss_pred chHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC
Q 006430 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (645)
Q Consensus 602 ~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~ 635 (645)
.|+++|..|++|||+ |+||+|.++|+..
T Consensus 346 ----~i~~aL~~Aa~rGV~--Vril~p~~~d~~~ 373 (483)
T PRK01642 346 ----DLLAALKTAALRGVD--VRIIIPSKNDSLL 373 (483)
T ss_pred ----HHHHHHHHHHHcCCE--EEEEeCCCCCcHH
Confidence 899999999999997 8899999998754
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=5.8e-37 Score=333.69 Aligned_cols=259 Identities=21% Similarity=0.303 Sum_probs=196.3
Q ss_pred ccccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCc
Q 006430 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (645)
Q Consensus 207 P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~ 286 (645)
+.+.||.+++|.|| +++|++++++|++||++|+|++|+|.++ . .| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-------~----~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-------K----VG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-------c----hH--HH
Confidence 56789999999999 6899999999999999999999999652 2 33 79
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCCCceEEe-ccCCCCCCccceeeeeecceee
Q 006430 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVGTIFT 365 (645)
Q Consensus 287 l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~-~~~~~~~~~~~~~~~~~~~~~r 365 (645)
|.++|++||+|||+||||+ |..||... +....+.|.++||++.. +|... ++. .....+.|
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~-----~~~-~~~~~~~R 110 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR-----LLG-MRTNLFRR 110 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc-----ccc-cccccccC
Confidence 9999999999999999994 99987542 35678889999999984 33211 110 01223459
Q ss_pred ccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHH
Q 006430 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA 445 (645)
Q Consensus 366 ~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav 445 (645)
+|+|++|||++ +||+||+|++++++.. .....|+|++++|+||+|
T Consensus 111 ~HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V 155 (411)
T PRK11263 111 MHRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVV 155 (411)
T ss_pred CcceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHH
Confidence 99999999998 9999999999844321 112469999999999999
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeE
Q 006430 446 YDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQ 525 (645)
Q Consensus 446 ~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQ 525 (645)
.+++..|.+.|....... .+ . .+. + ..+. ....+...+|
T Consensus 156 ~~l~~~f~~~w~~~~~~~----------~~-----~--~~~-----~----------~~~~---------~~~~g~~~~~ 194 (411)
T PRK11263 156 ADIHQFELEALPGQSAAR----------RW-----W--RRH-----H----------RAEE---------NRQPGEAQAL 194 (411)
T ss_pred HHHHHHHHHHHhhcccch----------hh-----h--ccc-----c----------cCcc---------cCCCCCeEEE
Confidence 999999999997532110 00 0 000 0 0000 0122455677
Q ss_pred EEeeccCCCCCCCCCCchhhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHH
Q 006430 526 IFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM 605 (645)
Q Consensus 526 v~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~ 605 (645)
++.+- +. .....|+.+|+.+|.+|++.|||+||||+|+.
T Consensus 195 ~v~~~---p~---------------------~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~----------------- 233 (411)
T PRK11263 195 LVWRD---NE---------------------EHRDDIERHYLKALRQARREVIIANAYFFPGY----------------- 233 (411)
T ss_pred EEECC---Cc---------------------chHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------
Confidence 77662 11 11467999999999999999999999999973
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCC
Q 006430 606 ELALKIASKIRANERFAVYVIIPMWPEGDPK 636 (645)
Q Consensus 606 ~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~~ 636 (645)
.|+++|..|++|||+ |+||+|..||....
T Consensus 234 ~l~~aL~~Aa~RGV~--V~ii~~~~~d~~~~ 262 (411)
T PRK11263 234 RLLRALRNAARRGVR--VRLILQGEPDMPIV 262 (411)
T ss_pred HHHHHHHHHHHCCCE--EEEEeCCCCCcHHH
Confidence 799999999999997 88999999886543
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.95 E-value=7.4e-27 Score=258.35 Aligned_cols=265 Identities=24% Similarity=0.335 Sum_probs=192.5
Q ss_pred ccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHH
Q 006430 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (645)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~ 288 (645)
..++.++++.+| .+.|.++.++|++|+++|++++|++.++ . .| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~d-------~----~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQDD-------E----LG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeCC-------h----hH--HHHH
Confidence 678889999998 6899999999999999999999998652 2 33 7999
Q ss_pred HHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCCCc-eEEe-ccCCCCCCccceeeeeecceeec
Q 006430 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH 366 (645)
Q Consensus 289 ~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~-~~~~~~~~~~~~~~~~~~~~~r~ 366 (645)
++|.++|++||+||+|+ |..|+... ........++++++ .+.. .|..+.. ......+.|+
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~r~ 165 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP------LRFRRLNRRL 165 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc------chhhhhhccc
Confidence 99999999999999995 99987331 12566788889999 5553 2322210 0133568899
Q ss_pred cceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHH
Q 006430 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (645)
Q Consensus 367 HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~ 446 (645)
|+|++|||+. ++|+||+|+.+.++... ...++|+|++++++||+|.
T Consensus 166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~ 211 (438)
T COG1502 166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA 211 (438)
T ss_pred cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence 9999999998 99999999999665431 1245899999999999999
Q ss_pred HHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEE
Q 006430 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (645)
Q Consensus 447 dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv 526 (645)
+++..|.++|+....... + +. .. ..+. .+.. .. ........+|+
T Consensus 212 ~l~~~f~~~w~~~~~~~~-------------~-~~---~~---~~~~----------~~~~--~~----~~~~~~~~~~~ 255 (438)
T COG1502 212 DLARLFIQDWNLESGSSK-------------P-LL---AL---VRPP----------LQSL--SL----LPVGRGSTVQV 255 (438)
T ss_pred HHHHHHHHHhhhccCcCc-------------c-cc---cc---cccc----------cccc--cc----cccccCcceEE
Confidence 999999999998743310 0 00 00 0000 0000 00 01112223788
Q ss_pred EeeccCCCCCCCCCCchhhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHH
Q 006430 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (645)
Q Consensus 527 ~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~ 606 (645)
+.+.| ....+. ....+...|+.+|.+|+++|||++|||+|+. +
T Consensus 256 ~~~~P---~~~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~ 298 (438)
T COG1502 256 LSSGP---DKGLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------E 298 (438)
T ss_pred EecCC---ccccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------H
Confidence 88843 211110 0112558999999999999999999999984 8
Q ss_pred HHHHHHHHHHcCCCcEEEEEec--CCCCC
Q 006430 607 LALKIASKIRANERFAVYVIIP--MWPEG 633 (645)
Q Consensus 607 i~~aL~~A~~~g~~~~V~IvlP--~~p~~ 633 (645)
+..+|..|.++|++ |.|++| ..++.
T Consensus 299 ~~~al~~a~~~Gv~--V~ii~~~~~~~d~ 325 (438)
T COG1502 299 LLAALKAAARRGVD--VRIIIPSLGANDS 325 (438)
T ss_pred HHHHHHHHHhcCCE--EEEEeCCCCCCCh
Confidence 99999999999998 889999 55444
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.95 E-value=7e-27 Score=255.68 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=170.7
Q ss_pred chHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCC
Q 006430 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~ 321 (645)
.+|+.+.++|.+||++|+|++|.|.|+ +...-+.| .+|.++|++||+|||+||||+ |..+.
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~~------d~~~~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~---------- 86 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSLS------DEVGTNFG--TMILNEIIQLPKRGVRVRIAV-NKSNK---------- 86 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEecC------ccccchhH--HHHHHHHHHHHHCCCEEEEEE-CCCCC----------
Confidence 578999999999999999999998752 11000123 789999999999999999995 96532
Q ss_pred ccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 006430 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (645)
Q Consensus 322 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~ 401 (645)
.....+.|+++||++.... +.. ..+.++|+|++|||++ ++|+||+|+.+ |+..
T Consensus 87 -----~~~~~~~L~~aGv~v~~~~--~~~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~- 139 (424)
T PHA02820 87 -----PLKDVELLQMAGVEVRYID--ITN----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT- 139 (424)
T ss_pred -----chhhHHHHHhCCCEEEEEe--cCC----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh-
Confidence 1234567888999987421 110 1235799999999998 99999999977 5533
Q ss_pred CcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeE--eChHHHHHHHHHHHHHhhhcccchhhhhhcccccccccc
Q 006430 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479 (645)
Q Consensus 402 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i--~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~ 479 (645)
..+|+++++ +||+|.+|+..|.++|+.+++...+ .|.
T Consensus 140 ------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~--------~~~--- 178 (424)
T PHA02820 140 ------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPY--------NWK--- 178 (424)
T ss_pred ------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCC--------ccc---
Confidence 124777777 7999999999999999987533100 000
Q ss_pred cccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccch
Q 006430 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVID 559 (645)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e 559 (645)
..++ . .++...|.. ....+....+++.+.| ....+ ...
T Consensus 179 ----~~~~----~----------~~~~~~p~~----~~~~~~~~~~~~sssP---~~~~~-----------------~~r 216 (424)
T PHA02820 179 ----NFYP----L----------YYNTDHPLS----LNVSGVPHSVFIASAP---QQLCT-----------------MER 216 (424)
T ss_pred ----cccc----c----------ccccCCCcc----cccCCccceEEEeCCC---hhhcC-----------------CCC
Confidence 0000 0 011000000 0011111244555421 10000 011
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHH-HHHcCCCcEEEEEecCCCCCCCCcc
Q 006430 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIAS-KIRANERFAVYVIIPMWPEGDPKTN 638 (645)
Q Consensus 560 ~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~-A~~~g~~~~V~IvlP~~p~~~~~~~ 638 (645)
....++|+.+|.+||++|||++|||+|+... .+. .+.-=..|.+||.+ |++|||+ |+||+|.+++..+...
T Consensus 217 ~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~----~~~--~~~yw~~i~~AL~~AA~~RGV~--VriLvp~~~d~~~~~~ 288 (424)
T PHA02820 217 TNDLTALLSCIRNASKFVYVSVMNFIPIIYS----KAG--KILFWPYIEDELRRAAIDRKVS--VKLLISCWQRSSFIMR 288 (424)
T ss_pred CchHHHHHHHHHHHhhEEEEEEccccceeec----cCC--cccchHHHHHHHHHHHHhCCCE--EEEEEeccCCCCccHH
Confidence 3467999999999999999999999998210 000 00111379999996 6679997 8899999999977643
No 11
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.95 E-value=3.2e-27 Score=255.05 Aligned_cols=247 Identities=15% Similarity=0.182 Sum_probs=163.0
Q ss_pred chHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCC
Q 006430 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~ 321 (645)
.+|+++.++|++||++|+|++|+|.- +++. .| .+|.++|++||+|||+|||| +|..|+
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d~----~g--~~i~~aL~~aa~rGV~Vril-~D~~~~---------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCNL-----RSTP----EG--RLILDKLKEAAESGVKVTIL-VDEQSG---------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEecc-----cCCc----hH--HHHHHHHHHhccCCCeEEEE-ecCCCC----------
Confidence 57999999999999999999998421 1232 44 89999999999999999999 597653
Q ss_pred ccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 006430 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (645)
Q Consensus 322 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~ 401 (645)
+...+.|+++||++.... +.. + +.....|+|++||||+ +||+||+||++ +|.+.
T Consensus 89 ------~~~~~~L~~~Gv~v~~~~--~~~---~------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~~ 142 (369)
T PHA03003 89 ------DKDEEELQSSNINYIKVD--IGK---L------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIST 142 (369)
T ss_pred ------CccHHHHHHcCCEEEEEe--ccc---c------CCCCceeeeEEEEcCc--------EEEEecCccCC-cccCc
Confidence 234567889999987321 111 0 0012348899999999 99999999999 44332
Q ss_pred CcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccc
Q 006430 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 481 (645)
Q Consensus 402 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~~~~l~ 481 (645)
. ...+.|+|. ||+|.+|+..|.+.|+.++++. +.
T Consensus 143 ~-------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~----------------~~ 176 (369)
T PHA03003 143 I-------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS----------------VF 176 (369)
T ss_pred c-------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCC----------------cc
Confidence 1 224689994 9999999999999998775431 00
Q ss_pred cccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhH
Q 006430 482 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 561 (645)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~s 561 (645)
.... ... ..|... +.. ...+. ..+++.+ +|....+ .....
T Consensus 177 --~~~~----~~~--------~~~~~~--~~~--~~~~~--~~~~~~s---~P~~~~~-----------------~~~~~ 216 (369)
T PHA03003 177 --NRLC----CAC--------CLPVST--KYH--INNPI--GGVFFSD---SPEHLLG-----------------YSRTL 216 (369)
T ss_pred --cccc----ccc--------CCcccc--ccc--ccCCC--cceEEec---CChHHcC-----------------CCCCc
Confidence 0000 000 001000 000 00001 1234444 2210000 01235
Q ss_pred HHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHH-HcCCCcEEEEEecCCC
Q 006430 562 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMWP 631 (645)
Q Consensus 562 I~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~-~~g~~~~V~IvlP~~p 631 (645)
++++|+.+|.+||++|||+++||+|.... +-.....++|.+||..|+ +|||+ |+||+|.+.
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~-------d~~~~~~~~i~~AL~~AAa~RGV~--VRILv~~~~ 278 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIRE-------DDKTTYWPDIYNALIRAAINRGVK--VRLLVGSWK 278 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEee-------CCCCccHHHHHHHHHHHHHcCCCE--EEEEEecCC
Confidence 78999999999999999999999886210 001122358999999985 99987 889999864
No 12
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.95 E-value=7.2e-27 Score=256.44 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=176.9
Q ss_pred ccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHH
Q 006430 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (645)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~ 288 (645)
..++.++++.+| +++|++|+++|++|+++|+|++|+|.. |+ .| ..|.
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~-------D~----~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLED-------DE----AG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecC-------Cc----hH--HHHH
Confidence 357889999998 689999999999999999999999965 33 44 8999
Q ss_pred HHHHHHhh--cCCEEEEEEecCC-------CccCccCccCCCccccChHHHHhhhcCC--CceEEeccCCCCCCccceee
Q 006430 289 ELLKYKSE--EGVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQ 357 (645)
Q Consensus 289 ~~L~~~a~--rGV~VriL~~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gv~v~~~~~~~~~~~~~~~~ 357 (645)
++|.+|++ +||+|+||+ |.. |+... ..+..+.+.|+++ ||++.+.. .|.+
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~-~p~~------- 129 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYG-VPVN------- 129 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcC-Cccc-------
Confidence 99999854 899999996 985 33210 0135566677654 58887531 1211
Q ss_pred eeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeee
Q 006430 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLH 437 (645)
Q Consensus 358 ~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~ 437 (645)
....+.++|+|++|||++ |+|+| +||++.|+.. + .. ...|..
T Consensus 130 -~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~--~------------------------~~--~r~Dry 171 (451)
T PRK09428 130 -TREALGVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQ--H------------------------DK--YRYDRY 171 (451)
T ss_pred -cchhhhhceeeEEEECCC--------EEEec-ccccHHHhcC--C------------------------cc--cCcceE
Confidence 113567899999999998 99997 7999944321 0 11 123778
Q ss_pred eeEeChHHHHHHHHHHHHHhhhcccchhhhhhccccc-cccccccccccc-ccccCccccccCCCccccCCCCccccccc
Q 006430 438 CRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH-WRDDYLIKIGRI-SWILSPELSLKTNGTTIVPRDDNVVRVSK 515 (645)
Q Consensus 438 ~~i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 515 (645)
++|+||+++++...|+++|..++..- .+... +.... ..+... ..+ ..... .....+.
T Consensus 172 ~~i~g~~la~~~~~fi~~~~~~~~~v------~~l~~~~~~~~-~~~~~~~~~~-~~~l~----~~~~~~~--------- 230 (451)
T PRK09428 172 HLIRNAELADSMVNFIQQNLLNSPAV------NRLDQPNRPKT-KEIKNDIRQF-RQRLR----DAAYQFQ--------- 230 (451)
T ss_pred EEEeCchHHHHHHHHHHHHhhccCcc------ccccccccccc-hhhHHHHHHH-HHHHh----hhccCcc---------
Confidence 88999999999999999998765421 00000 00000 000000 000 00000 0000000
Q ss_pred CCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccc
Q 006430 516 EDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYK 595 (645)
Q Consensus 516 ~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~ 595 (645)
...+...+++.+..+.| | ...+...++.+|.+|++.|+|.||||+|+.
T Consensus 231 -~~~~~~~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~~------- 278 (451)
T PRK09428 231 -GQANNDELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLPA------- 278 (451)
T ss_pred -cccCCCCeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCCH-------
Confidence 00111234555443222 1 145889999999999999999999999984
Q ss_pred CCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 006430 596 NAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (645)
Q Consensus 596 ~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~ 630 (645)
.++++|..|+++|++ |.||+|..
T Consensus 279 ----------~l~~~L~~a~~rGv~--V~Ii~~~~ 301 (451)
T PRK09428 279 ----------ILVRNIIRLLRRGKK--VEIIVGDK 301 (451)
T ss_pred ----------HHHHHHHHHHhcCCc--EEEEcCCc
Confidence 799999999999997 88999988
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=2.6e-22 Score=191.92 Aligned_cols=157 Identities=50% Similarity=0.818 Sum_probs=132.5
Q ss_pred eEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe
Q 006430 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (645)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (645)
..++||+|+|+|++|++|+++|+.+.+++++|.++..|......-.. . ......+++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPS----S--------HRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhccccccccc----c--------cccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999999888889998877655443210000 0 01123456999999999987
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCc
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g 171 (645)
+..||++++++.||+|||+|.|.+.+..+.|.|+|||++.+++++||++.++++++..+...+.||+|.+..+++.+..+
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988888899999999998889999999999999988888999999888888888889
Q ss_pred eEEEEEEEE
Q 006430 172 SIQLELKFT 180 (645)
Q Consensus 172 ~l~l~l~f~ 180 (645)
+|+|+++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999984
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=1.2e-19 Score=165.47 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=101.6
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++++..+ .+. +||||++.+++++ .||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~-~kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAV-YET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEE-EEe
Confidence 78999999999988655 443 9999999998876 599
Q ss_pred ccccC-CCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccc-cccCCceeEEEEEccCCCCCCCCCCceE
Q 006430 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (645)
Q Consensus 97 ~v~~~-t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~-~l~~~~~~~~w~~l~~~~~~~~~~~g~l 173 (645)
++..+ +.||+|||+|.|.+.+....|.|+|||++.++ |++||.+.+++. .+..++..+.||+|....++ +..|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 89999999999999887778999999999998 899999999996 57778888999999654444 456999
Q ss_pred EEEEEE
Q 006430 174 QLELKF 179 (645)
Q Consensus 174 ~l~l~f 179 (645)
+|+|+|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999997
No 15
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=1.8e-18 Score=157.83 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=106.6
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
+|.|+|++|++|+..+..+. +||||++.+.+....+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 48999999999998776554 899999999886778999
Q ss_pred cccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 006430 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (645)
+++++.||+|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|+|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999877788999999999986 9999999999999998888999999965544 2467999999
Q ss_pred EEEEe
Q 006430 177 LKFTP 181 (645)
Q Consensus 177 l~f~p 181 (645)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99976
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.7e-18 Score=159.16 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=100.5
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeecc
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (645)
++|+|++|++|+.++..+. +||||++.+++.+ .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998776554 9999999998765 69999
Q ss_pred ccCCCCCeeeeEEEEeecC------CCCeEEEEEEEcCCCC-CeeeeeEeecccccc--CCceeEEEEEccCCCCCCCCC
Q 006430 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (645)
Q Consensus 99 ~~~t~~P~w~e~f~~~~~~------~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~--~~~~~~~w~~l~~~~~~~~~~ 169 (645)
++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|++.++. .+.....||+|....+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999876 3567899999999887 899999999999987 566778999996555555567
Q ss_pred CceEEEEEE
Q 006430 170 GASIQLELK 178 (645)
Q Consensus 170 ~g~l~l~l~ 178 (645)
.|+|+|+++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999873
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.2e-18 Score=157.17 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=100.6
Q ss_pred EEEEEEEeeC---CCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeee
Q 006430 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (645)
Q Consensus 19 L~v~i~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (645)
|+|+|++|++ |+.++..+. +||||++.+++++ .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 666665543 9999999998876 59
Q ss_pred eccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCC-------CCeeeeeEeeccccccCCceeEEEEEccCCCCCCCC
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~ 168 (645)
|++++++.||+|||+|.|.+..+...|.|+|||++.+ ++++||++.++++.+..+.....||+|....+++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999988778899999999886 699999999999999989889999999766666677
Q ss_pred CCceEEE
Q 006430 169 PGASIQL 175 (645)
Q Consensus 169 ~~g~l~l 175 (645)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 7888875
No 18
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.76 E-value=1.5e-17 Score=156.04 Aligned_cols=128 Identities=23% Similarity=0.459 Sum_probs=112.2
Q ss_pred eEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe
Q 006430 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (645)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (645)
...+.+.|.|.|++|++||.+ .+|||++.+++.
T Consensus 6 ~~R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~ 38 (146)
T cd04013 6 SRRTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKT 38 (146)
T ss_pred ceEEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCE
Confidence 456788999999999999852 479999999999
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcC-CC----CCeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~-~~----~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
.++||+++.++.||.|+|+|.|...+..+.+.|.|+..+ .. ++++||.+.||++++..+...++||+|+...+.+
T Consensus 39 ~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 39 LYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred EEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 999999999999999999999998888888999997543 33 4789999999999999999999999998877775
Q ss_pred -------CCCCceEEEEEEEEeCCCCC
Q 006430 167 -------PKPGASIQLELKFTPCDKNP 186 (645)
Q Consensus 167 -------~~~~g~l~l~l~f~p~~~~~ 186 (645)
.+..++|+++++|.+....|
T Consensus 119 ~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 119 KSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccccCCCCEEEEEEEEEEeeeCC
Confidence 56778999999999976554
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=7.4e-18 Score=154.03 Aligned_cols=99 Identities=25% Similarity=0.448 Sum_probs=87.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (645)
+||||++.+.....++|+++++|.||+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...+.||+
T Consensus 22 sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 101 (121)
T cd08401 22 RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP 101 (121)
T ss_pred cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence 899999999877678999999999999999999999877678999999999987 8999999999999987778899999
Q ss_pred ccCCCCCCCCCCceEEEEEEE
Q 006430 159 IIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 159 l~~~~~~~~~~~g~l~l~l~f 179 (645)
| .+.+...+..|+|+|+++|
T Consensus 102 L-~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 102 L-QPVDADSEVQGKVHLELRL 121 (121)
T ss_pred E-EccCCCCcccEEEEEEEEC
Confidence 9 4433333457999999875
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.5e-17 Score=151.64 Aligned_cols=102 Identities=20% Similarity=0.399 Sum_probs=87.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~ 157 (645)
+||||++.+++....||+++ ++.||.|||+|.|.+.++. ..+.|.|||++..+ +++||.+.++|.++..+...+.||
T Consensus 22 ~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~ 100 (126)
T cd08400 22 PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWY 100 (126)
T ss_pred CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeE
Confidence 89999999988776799985 5899999999999866543 56899999998887 899999999999999888889999
Q ss_pred EccCCCCCCCCCCceEEEEEEEEeC
Q 006430 158 DIIAPSGSPPKPGASIQLELKFTPC 182 (645)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~f~p~ 182 (645)
+|.....++.+..|+|+|+++|.+.
T Consensus 101 ~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 101 PLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9965443345677999999999873
No 21
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=3.1e-17 Score=150.79 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=90.8
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEE
Q 006430 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (645)
Q Consensus 80 ~dpyv~v~l~~-~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~ 157 (645)
+||||++.++. ....+|++++++.||+|||+|.|.+......|.|+|||.+..+ +++||++.+++.++..+.....||
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 99999999975 3457999999999999999999999876778999999999987 899999999999999887788999
Q ss_pred EccCCCCCCCCCCceEEEEEEEEeCCC
Q 006430 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (645)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~f~p~~~ 184 (645)
+|....++..+..|+|++++.|.+.+.
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995443333456899999999988654
No 22
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=2.9e-17 Score=151.23 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|+..+..+. +||||++.+.++. .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998775543 8999999998866 6999
Q ss_pred cccCCCCCeeeeEEEEeecCCC----CeEEEEEEEcCCC--CCeeeeeEeecccccc-CCceeEEEEEccCCCCCCCCCC
Q 006430 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~~----~~l~i~v~d~~~~--~~~~iG~~~i~l~~l~-~~~~~~~w~~l~~~~~~~~~~~ 170 (645)
+++++.||+|||+|.|.+..+. ..|.|+|||.+.+ ++++||++.++++++. .+.....||+|. ..+...+.+
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999988642 4689999999877 4899999999999997 567778999994 444444567
Q ss_pred ceEEEEEEEE
Q 006430 171 ASIQLELKFT 180 (645)
Q Consensus 171 g~l~l~l~f~ 180 (645)
|+|+|++.++
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999886
No 23
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=4.3e-17 Score=154.48 Aligned_cols=122 Identities=26% Similarity=0.395 Sum_probs=103.3
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|++++..+. +||||++.++++. .+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk 37 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTR 37 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeE
Confidence 38999999999998876654 9999999999854 6999
Q ss_pred cccC-CCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCC----ceeEEEEEccCCCC-----C
Q 006430 98 VLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S 165 (645)
Q Consensus 98 v~~~-t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~----~~~~~w~~l~~~~~-----~ 165 (645)
+.++ +.||+|||+|.|.+..+ .+.+.|+|+|++..+ +++||++.++|+++..+ .....||+|....+ +
T Consensus 38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence 9877 69999999999999765 457899999998875 89999999999998743 45689999976654 4
Q ss_pred CCCCCceEEEEEEEEeC
Q 006430 166 PPKPGASIQLELKFTPC 182 (645)
Q Consensus 166 ~~~~~g~l~l~l~f~p~ 182 (645)
+.+.+|+|+|+++|.+.
T Consensus 118 ~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 118 KRKFASRIHLRLCLDGG 134 (150)
T ss_pred cCcccccEEEEEEecCc
Confidence 56778999999999864
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=2.4e-17 Score=149.51 Aligned_cols=116 Identities=26% Similarity=0.504 Sum_probs=99.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++|++.+..+. +||||++.+++.. .+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 689999999999998776554 8999999998754 689
Q ss_pred ccccC-CCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 006430 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (645)
Q Consensus 97 ~v~~~-t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~ 174 (645)
+++++ +.||+|||+|.|.+..+ ...|.|+|||++..++++||++.+++.++..+....+||+|. .++ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~-~~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELT-LKG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEec-cCC---cEeeEEE
Confidence 98754 79999999999999874 466899999998877999999999999987777778999994 333 3569999
Q ss_pred EEEEE
Q 006430 175 LELKF 179 (645)
Q Consensus 175 l~l~f 179 (645)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99987
No 25
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1.1e-16 Score=146.20 Aligned_cols=98 Identities=24% Similarity=0.448 Sum_probs=83.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCCCeeeeeEeeccccccCCc-----ee
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE-----LI 153 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~-----~~ 153 (645)
+||||++.+++.. .||++++++.||+|||+|.|.+... ...|.|+|||++..++++||++.++++++.... ..
T Consensus 17 ~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 8999999998754 7999999999999999999998764 567899999999888999999999999987432 35
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLELKFT 180 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~f~ 180 (645)
..||+|....+ .+..|+|+|++.|-
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEec
Confidence 68999965544 45779999999983
No 26
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.70 E-value=3.5e-16 Score=141.86 Aligned_cols=117 Identities=31% Similarity=0.545 Sum_probs=99.9
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++|+.++..+. +||||++.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 689999999999998776554 8999999998765 699
Q ss_pred ccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l 175 (645)
++++++.||.|||+|.|.+......+.|+|||++..+ +++||++.+++.++..+. ..||+|... ....+..|+|+|
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~-~~~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDK-KLRTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECccc-CCCCceeeEEEE
Confidence 9999999999999999999876778999999999876 899999999999987553 579999544 333446799999
Q ss_pred EEEE
Q 006430 176 ELKF 179 (645)
Q Consensus 176 ~l~f 179 (645)
++.|
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9886
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.9e-16 Score=146.59 Aligned_cols=120 Identities=22% Similarity=0.412 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe------
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~------ 91 (645)
.|.|+|++|++|+.++..+. +||||++.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 38999999999998776554 899999999653
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce------eEEEEEccCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~------~~~w~~l~~~~~ 164 (645)
...+|++++++.||+|||+|.|.+.+....|.|+|||++.++ +++||.+.+++.++..+.. ...||+|. +..
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRS 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecC
Confidence 246999999999999999999999876778999999999987 8999999999999885433 45899994 333
Q ss_pred CCCCCCceEEEEEEEE
Q 006430 165 SPPKPGASIQLELKFT 180 (645)
Q Consensus 165 ~~~~~~g~l~l~l~f~ 180 (645)
+..+..|+|+|++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 3345689999999984
No 28
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=5.1e-16 Score=140.36 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=98.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|+..+..+. +||||++.+.+.. .+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~ 37 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK 37 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence 37899999999998776543 8999999998755 7999
Q ss_pred cccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 006430 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l 175 (645)
+++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.|++|. + .+|+|++
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~-~------~~G~~~~ 110 (116)
T cd08376 38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE-D------GEGSLLL 110 (116)
T ss_pred cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEcc-C------CCcEEEE
Confidence 999999999999999998876 577899999999886 899999999999999888889999993 2 2499999
Q ss_pred EEEEE
Q 006430 176 ELKFT 180 (645)
Q Consensus 176 ~l~f~ 180 (645)
.+.|+
T Consensus 111 ~~~~~ 115 (116)
T cd08376 111 LLTLT 115 (116)
T ss_pred EEEec
Confidence 98875
No 29
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.69 E-value=3.2e-16 Score=143.10 Aligned_cols=117 Identities=25% Similarity=0.513 Sum_probs=98.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeecc
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (645)
|.|+|++|++|++++..+. +||||++.+++....||++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 7899999999998876654 8999999998876689999
Q ss_pred ccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 006430 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (645)
Q Consensus 99 ~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~l~~~~~~~~~~~g~l~l~ 176 (645)
++++.||+|||.|.|.+.+....|.|+|||++.++ +++||++.++++++..+ ...+.|++|. +.+...+..|+|+|.
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~-~~~~~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLT-EVDPDEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECe-eeCCCCccccEEEEE
Confidence 99999999999999999877778999999999987 89999999999988753 3468899994 322222356999988
Q ss_pred EE
Q 006430 177 LK 178 (645)
Q Consensus 177 l~ 178 (645)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 30
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=3e-16 Score=142.69 Aligned_cols=113 Identities=27% Similarity=0.528 Sum_probs=96.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--eeeeee
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~kT 96 (645)
|.|+|++|++|+..+..+. +||||++.+.+ ..+.||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998765443 89999999964 355799
Q ss_pred ccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l 175 (645)
++++++.||+|||+|.|.+.... ..|.|+|||++.+++++||++.+++.++..+.....||+| .++ ..|+|++
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCC-----CCceEEE
Confidence 99999999999999999987653 4589999999988889999999999999989899999999 443 3489888
Q ss_pred EEEE
Q 006430 176 ELKF 179 (645)
Q Consensus 176 ~l~f 179 (645)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8765
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.69 E-value=1.9e-16 Score=144.96 Aligned_cols=106 Identities=25% Similarity=0.486 Sum_probs=91.7
Q ss_pred eeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC
Q 006430 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (645)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (645)
.+.|..+.|.|+|++|++|+.++ .+. +||||++++.+
T Consensus 7 ~l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~ 43 (122)
T cd08381 7 SISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLP 43 (122)
T ss_pred EEEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEee
Confidence 34666899999999999999877 443 99999999953
Q ss_pred ----eeeeeeccccCCCCCeeeeEEEEee-cC---CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 ----ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 ----~~~~kT~v~~~t~~P~w~e~f~~~~-~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.||++++++.||+|||+|.|.+ +. ....|.|+|||++.++ +++||++.++|.++..+.....||+|
T Consensus 44 ~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 44 DPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3457999999999999999999997 32 3567899999999987 89999999999999988778999998
No 32
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.69 E-value=3.4e-16 Score=143.74 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=99.8
Q ss_pred eEEEEEEEEeeCCCCCCC--CchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeee
Q 006430 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (645)
|.|.|+|++|++|+..+. .+. +||||++.++... .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 689999999999998765 433 8999999997755 7
Q ss_pred eeccccCCCCCeeeeEEEEeecC-CCCeEEEEEEEcCCCC-CeeeeeEeeccccccC---CceeEEEEEccCCC-CCCCC
Q 006430 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (645)
Q Consensus 95 kT~v~~~t~~P~w~e~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~l~~~~-~~~~~ 168 (645)
+|++++++.||.|||+|.|.+.. ....|.|+|||++..+ +++||.+.+++.++.. ......||+|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4678999999999886 8999999999999872 34467899995442 23345
Q ss_pred CCceEEEEEEE
Q 006430 169 PGASIQLELKF 179 (645)
Q Consensus 169 ~~g~l~l~l~f 179 (645)
..|+|+|++++
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999874
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=5.6e-16 Score=143.59 Aligned_cols=127 Identities=24% Similarity=0.452 Sum_probs=102.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeee
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (645)
+.|.|.|+|++|++|+..+..+.. ++. + -..+.+||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~-------------------~~~-~------------~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH-------------------AVP-K------------KGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh-------------------ccc-c------------cCccCcCcEEEEEECCEEEe
Confidence 568999999999999877653210 000 0 00124899999999987778
Q ss_pred eeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccC--CceeEEEEEccCCCCCCCCCCc
Q 006430 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (645)
Q Consensus 95 kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~--~~~~~~w~~l~~~~~~~~~~~g 171 (645)
+|++++++.||.|||+|.|.+. ....+.|.|||++.++ +++||++.++|+++.. +...+.|++|. +.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence 9999999999999999999997 4578999999998877 8999999999999886 56778999992 349
Q ss_pred eEEEEEEEEeC
Q 006430 172 SIQLELKFTPC 182 (645)
Q Consensus 172 ~l~l~l~f~p~ 182 (645)
+|+|+++|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998763
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=3.8e-16 Score=146.85 Aligned_cols=112 Identities=20% Similarity=0.388 Sum_probs=93.8
Q ss_pred CCcee--EEEceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEE
Q 006430 8 DKEKV--IYLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYV 84 (645)
Q Consensus 8 ~~~~~--~~~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv 84 (645)
+.+.+ .|-.|.|.|+|++|+||+.++ ..+. +||||
T Consensus 18 G~l~lsl~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYV 55 (146)
T cd04028 18 GDIQLGLYDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYV 55 (146)
T ss_pred ceEEEEEEeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeE
Confidence 44443 677899999999999998754 2332 89999
Q ss_pred EEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEE-EcCCCC-CeeeeeEeeccccccCCceeEEEEE
Q 006430 85 TVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (645)
Q Consensus 85 ~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~-d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (645)
++++.. ..+.||++++++.||+|||+|.|.+......|.|+|| |++.+. +++||++.|+|+.+..+.....||+
T Consensus 56 Kv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~ 135 (146)
T cd04028 56 KVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYK 135 (146)
T ss_pred EEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEe
Confidence 999943 2367999999999999999999999866778999999 567776 8999999999999987888899999
Q ss_pred ccC
Q 006430 159 IIA 161 (645)
Q Consensus 159 l~~ 161 (645)
|..
T Consensus 136 L~~ 138 (146)
T cd04028 136 LFP 138 (146)
T ss_pred cCC
Confidence 953
No 35
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.6e-16 Score=141.98 Aligned_cols=121 Identities=30% Similarity=0.452 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC-eeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-~~~~k 95 (645)
|.|.|+|++|++|+..+..+. .+||||++.+.+ ....+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999986443221 289999999988 56689
Q ss_pred eccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~ 174 (645)
|++++++.+|.|||+|.|.+......|.|+|||.+..+ +++||.+.+++.++..+...+.|+..+...++ ..|+|+
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k---~~G~i~ 117 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGK---PVGELN 117 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCc---cceEEE
Confidence 99999999999999999999866788999999999886 89999999999999876655544433344443 569999
Q ss_pred EEEEEEe
Q 006430 175 LELKFTP 181 (645)
Q Consensus 175 l~l~f~p 181 (645)
++++|.|
T Consensus 118 ~~l~~~p 124 (124)
T cd04044 118 YDLRFFP 124 (124)
T ss_pred EEEEeCC
Confidence 9999986
No 36
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=6.3e-16 Score=141.36 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|+.++..+. +||||++.+++.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 48999999999998775543 8999999998755 6999
Q ss_pred cccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC---CCCCCce
Q 006430 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~---~~~~~g~ 172 (645)
+++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.||+|...... ..+..|+
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 999999999999999998875 466899999999887 89999999999999877677899999643222 3456788
Q ss_pred EEEEEE
Q 006430 173 IQLELK 178 (645)
Q Consensus 173 l~l~l~ 178 (645)
|+|.|+
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 888763
No 37
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.67 E-value=3.2e-16 Score=141.45 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=86.6
Q ss_pred EEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--
Q 006430 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (645)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-- 90 (645)
....+.|.|+|++|++|+ ..+. +||||++++..
T Consensus 10 ~~~~~~L~V~vikA~~L~---~~g~------------------------------------------sDPYVKv~L~~~~ 44 (118)
T cd08677 10 DKQKAELHVNILEAENIS---VDAG------------------------------------------CECYISGCVSVSE 44 (118)
T ss_pred cCcCCEEEEEEEEecCCC---CCCC------------------------------------------CCeEEEEEEcCCc
Confidence 345689999999999998 2232 89999999953
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.+|+|.++|.||+|||+|.|.++.. ...|.|+|||.|.++ +++||++.+++.++..+...++|..|
T Consensus 45 k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 45 GQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3467999999999999999999998874 456999999999998 99999999999998767777888654
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=9.3e-16 Score=139.32 Aligned_cols=120 Identities=27% Similarity=0.466 Sum_probs=98.2
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|+|+|++|++|+..+.... | ...+.+||||++.+++ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~--------------------------~----------~~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG--------------------------G----------LVKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc--------------------------c----------CCCCCcCCEEEEEECC-EeEEc
Confidence 679999999999997664210 0 0012389999999988 45799
Q ss_pred ccccCCCCCeeeeEEEEeecC-CCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 006430 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~-~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l 175 (645)
++++++.+|+|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+...+.||+|.+. ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 456789999999888889999999999999877778899999422 3499999
Q ss_pred EEEE
Q 006430 176 ELKF 179 (645)
Q Consensus 176 ~l~f 179 (645)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 8874
No 39
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=7.1e-16 Score=140.46 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=84.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC-----C-e
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~-----~-~ 91 (645)
.|.|+|++|++|+.++. |. +||||+|++. . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999987652 33 8999999983 2 2
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
++.+|++++++.||+|||+|.|.+... ...|.|.|+|++..+ +++||++.+|+.++..++....|++|
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 346899999999999999999999753 245899999999887 89999999999999988888999999
No 40
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=5e-16 Score=141.53 Aligned_cols=106 Identities=18% Similarity=0.350 Sum_probs=90.2
Q ss_pred eeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC
Q 006430 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (645)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (645)
.+.+-++.|.|+|++|++|++++ .+. +||||++.+.+
T Consensus 6 ~~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p 42 (119)
T cd08685 6 SIEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSP 42 (119)
T ss_pred EEEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEe
Confidence 35667899999999999999876 333 89999999854
Q ss_pred ----eeeeeeccccCCCCCeeeeEEEEeecCC--CCeEEEEEEEcCCCC--CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 ----~~~~kT~v~~~t~~P~w~e~f~~~~~~~--~~~l~i~v~d~~~~~--~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.||++++++.||+|||+|.|.+... ...|.|+||+++... +++||.+.|++.++..++..++||.|
T Consensus 43 ~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 43 DKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3456999999999999999999998763 346889999998764 68999999999999878888999976
No 41
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.64 E-value=2.9e-15 Score=139.73 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=96.2
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeee
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (645)
--|.|.|+|++|++|+..+..+. +||||++.++... .
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~ 49 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-H 49 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-e
Confidence 34889999999999998776554 9999999997755 7
Q ss_pred eeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccC-----CceeEEEEEccCCCCCCC
Q 006430 95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPP 167 (645)
Q Consensus 95 kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~-----~~~~~~w~~l~~~~~~~~ 167 (645)
+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. ......|..+ . .
T Consensus 50 kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~-----~ 123 (136)
T cd08375 50 KTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H-----E 123 (136)
T ss_pred eccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c-----c
Confidence 999999999999999999999764 456899999999887 8999999999999875 2334456665 2 2
Q ss_pred CCCceEEEEEEE
Q 006430 168 KPGASIQLELKF 179 (645)
Q Consensus 168 ~~~g~l~l~l~f 179 (645)
+..|+|+|++.|
T Consensus 124 ~~~g~i~l~~~~ 135 (136)
T cd08375 124 VPTGEVVVKLDL 135 (136)
T ss_pred ccceeEEEEEEe
Confidence 355999999987
No 42
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=5.5e-15 Score=135.93 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeee
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (645)
...|+|+|++|++|+..+..+. +||||++.++++. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4679999999999998776554 9999999998865 69
Q ss_pred eccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCC-CCCCCCCceEE
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~-~~~~~~~g~l~ 174 (645)
|++++++.||+|||+|.|.+......|.|+|||++.+++++||.+.+++.++.. ....||+|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988888889999999998889999999999987643 345788884221 23445679999
Q ss_pred EEEEEEeC
Q 006430 175 LELKFTPC 182 (645)
Q Consensus 175 l~l~f~p~ 182 (645)
|++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987663
No 43
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.64 E-value=7.1e-15 Score=167.76 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=154.7
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec---CCCccC
Q 006430 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSHD 313 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D---~~gs~~ 313 (645)
+-|..+++.|++|.+ +|.|+.|.+.. ..+|.++|.+||++|++|++|+ + -++.
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde-- 399 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFDE-- 399 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhccc--
Confidence 458899999999987 99999998843 2699999999999999999997 7 2322
Q ss_pred ccCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccC
Q 006430 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (645)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni 393 (645)
..+.++.+.|+++|++|.+ .. ..++.|+|+++||.+.+| .-+..+++|.-|.
T Consensus 400 -----------~~ni~wa~~le~aG~~viy--g~--------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~ 451 (672)
T TIGR03705 400 -----------EANIRWARRLEEAGVHVVY--GV--------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNY 451 (672)
T ss_pred -----------hhhHHHHHHHHHcCCEEEE--cC--------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCC
Confidence 1246788899999999984 11 134789999999986211 1223455555444
Q ss_pred CCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeee-EeChHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 006430 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRV 472 (645)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-i~Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~ 472 (645)
... -...|+|+++. ..+..++|+...|...|.......
T Consensus 452 n~~--------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~--------- 490 (672)
T TIGR03705 452 HPK--------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK--------- 490 (672)
T ss_pred CCc--------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---------
Confidence 441 12479999999 888999999999999886432110
Q ss_pred ccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhcccccc
Q 006430 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (645)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (645)
.+.+ -+ + |.
T Consensus 491 ----------~~~l-----------------------------------------~~---~-----P~------------ 499 (672)
T TIGR03705 491 ----------FKHL-----------------------------------------LV---S-----PF------------ 499 (672)
T ss_pred ----------hHHH-----------------------------------------Hh---C-----cc------------
Confidence 0000 00 1 11
Q ss_pred ccCccchhHHHHHHHHHHHhccc----eEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEe-
Q 006430 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (645)
Q Consensus 553 ~~~~~~e~sI~~~yl~aI~~Ak~----~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~Ivl- 627 (645)
..+..+.+.+...|++||+ +|||.++| +++ .+|+++|..|+++||+ |.|++
T Consensus 500 ----~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D-----------------~~ii~aL~~As~aGV~--V~LivR 555 (672)
T TIGR03705 500 ----TLRKRLLELIDREIENARAGKPARIIAKMNS-LVD-----------------PDLIDALYEASQAGVK--IDLIVR 555 (672)
T ss_pred ----hHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCC-----------------HHHHHHHHHHHHCCCe--EEEEEe
Confidence 1246688899999999999 99999999 445 3899999999999998 66777
Q ss_pred ---------cCCCCCCCCc
Q 006430 628 ---------PMWPEGDPKT 637 (645)
Q Consensus 628 ---------P~~p~~~~~~ 637 (645)
|+.+|.....
T Consensus 556 GiCcL~pgipg~sd~i~v~ 574 (672)
T TIGR03705 556 GICCLRPGVPGLSENIRVR 574 (672)
T ss_pred cccccCCCCCCCCCCEEEE
Confidence 6666654443
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=4.4e-15 Score=136.59 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=89.9
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~ 155 (645)
+||||++.+.+.+ .+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||++.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998765 6999999999999999999998753 567899999999886 8999999999999998888899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEeCCCC
Q 006430 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (645)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~ 185 (645)
|++|.+..+++ .+|+|+++++|.|.+..
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99997665543 35999999999996543
No 45
>PRK05443 polyphosphate kinase; Provisional
Probab=99.63 E-value=9.7e-15 Score=167.55 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=158.2
Q ss_pred chHHHHHHHHHhccc-----eEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccC
Q 006430 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~ 316 (645)
+-|..+++.|++|.+ +|.++.|.+.. ..++.++|++||++||+|+||+ +.-.-
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----- 405 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKAR----- 405 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCcc-----
Confidence 458899999999988 99999998743 2699999999999999999997 64311
Q ss_pred ccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCC
Q 006430 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (645)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~ 396 (645)
+....+..+.+.|+++||+|.+ .++ .+..|.|+++||++..+ .-+..|++|+.|+..
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y--~~~--------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~- 462 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNP- 462 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEE--ccC--------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCc-
Confidence 1112246788889999999974 222 23579999999986222 234489999999988
Q ss_pred CCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe-ChHHHHHHHHHHHHHhhhcccchhhhhhcccccc
Q 006430 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD-GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (645)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~-Gpav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~ 475 (645)
+. ...|.|+++... +..++++...|...|.......
T Consensus 463 ~s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------ 499 (691)
T PRK05443 463 KT-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------ 499 (691)
T ss_pred ch-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence 22 136789999954 5699999999999986521110
Q ss_pred cccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccC
Q 006430 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (645)
Q Consensus 476 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~ 555 (645)
+. .++-+ |.
T Consensus 500 ----------~~-------------------------------------~l~~s---------P~--------------- 508 (691)
T PRK05443 500 ----------LR-------------------------------------KLLVS---------PF--------------- 508 (691)
T ss_pred ----------cc-------------------------------------EEeec---------Cc---------------
Confidence 00 00000 11
Q ss_pred ccchhHHHHHHHHHHHhccc----eEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEe----
Q 006430 556 VVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII---- 627 (645)
Q Consensus 556 ~~~e~sI~~~yl~aI~~Ak~----~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~Ivl---- 627 (645)
.....+.+.+...|.+||+ +|+|.++| +++ ++|+++|..|+++||+ |.|++
T Consensus 509 -~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d-----------------~~ii~aL~~As~~GV~--V~liVRGiC 567 (691)
T PRK05443 509 -TLRERLLELIDREIANARAGKPARIIAKMNS-LVD-----------------PQIIDALYEASQAGVK--IDLIVRGIC 567 (691)
T ss_pred -cHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCC-----------------HHHHHHHHHHHHCCCe--EEEEEeccc
Confidence 1146688999999999999 99999999 555 3899999999999998 66777
Q ss_pred ------cCCCCCCCC
Q 006430 628 ------PMWPEGDPK 636 (645)
Q Consensus 628 ------P~~p~~~~~ 636 (645)
|+.+|....
T Consensus 568 ~l~pgipg~sd~i~v 582 (691)
T PRK05443 568 CLRPGVPGLSENIRV 582 (691)
T ss_pred ccCCCCCCCCCCEEE
Confidence 666665443
No 46
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=2.5e-15 Score=137.52 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=90.2
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--ee
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (645)
-.+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998775543 89999999853 34
Q ss_pred eeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++++++..+...++|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 57999999999999999999998753 457999999999887 89999999999999888888999998
No 47
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=1.6e-15 Score=139.40 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
.+.|.|+|++|++|++++.. +. +||||++++.+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~ 51 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN 51 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 35899999999999987753 33 89999999842
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.|+|.++..+.....||+|
T Consensus 52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 3346999999999999999999998753 457999999999887 89999999999999877777889998
No 48
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.62 E-value=2.4e-15 Score=137.75 Aligned_cols=104 Identities=26% Similarity=0.466 Sum_probs=90.7
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC--Cee
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~~ 92 (645)
..|.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSN 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCC
Confidence 35789999999999998776554 8999999994 345
Q ss_pred eeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEcc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~ 160 (645)
..||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..++....||+|.
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 67999999999999999999998764 457999999999887 899999999999999787889999983
No 49
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.5e-15 Score=138.08 Aligned_cols=104 Identities=22% Similarity=0.386 Sum_probs=88.8
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|++|+..+... +.+||||++.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~-----------------------------------------~~~DpyVkv~l~p~~~~ 51 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAK-----------------------------------------KRSNPYVKTYLLPDKSR 51 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCC-----------------------------------------CCCCcEEEEEEEcCCcc
Confidence 5678999999999998765321 1289999999842
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++..+......+.||+|
T Consensus 52 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 52 QSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3356999999999999999999998753 457999999999887 89999999999999988889999998
No 50
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.62 E-value=4.2e-15 Score=132.24 Aligned_cols=97 Identities=26% Similarity=0.493 Sum_probs=84.6
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeecc
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (645)
|.|+|++|++|+..+..+. +||||++.++++ ..||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998665443 999999999884 479999
Q ss_pred ccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCCCeeeeeEeeccccccCC--ceeEEEEEcc
Q 006430 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDII 160 (645)
Q Consensus 99 ~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~--~~~~~w~~l~ 160 (645)
++++.||+|||+|.|.+..+ ...|.|+|+|.+. +++||++.++|.++... ...+.||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999875 5678999999887 88999999999998754 3678999993
No 51
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.62 E-value=2.2e-15 Score=135.26 Aligned_cols=100 Identities=32% Similarity=0.545 Sum_probs=86.5
Q ss_pred EEEEEEEeeCCCCCCC-CchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
|.|+|++|++|+.++. .+ .+||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~------------------------------------------~~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSD------------------------------------------LTDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCC------------------------------------------CCCceEEEEECC-eeEecc
Confidence 6899999999998763 23 289999999988 557999
Q ss_pred cccCCCCCee-eeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccC---CceeEEEEEccC
Q 006430 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (645)
Q Consensus 98 v~~~t~~P~w-~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~l~~ 161 (645)
+++++.||.| ||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. +...++||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999998864 367999999999987 8999999999999986 456789999964
No 52
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=142.58 Aligned_cols=96 Identities=29% Similarity=0.563 Sum_probs=88.0
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeee
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (645)
.+.|.|+|+|.+|.+|...|..+. +||||.+.+++++
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~- 39 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK- 39 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee-
Confidence 457999999999999998887554 9999999999988
Q ss_pred eeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~ 152 (645)
.||++++++.||+|||+|+|.+..+...|+++|||+|.++ |++||.++|++..+.....
T Consensus 40 lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 40 LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence 5999999999999999999999999999999999999998 9999999999999885543
No 53
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=4e-15 Score=140.54 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeeeeEEEEeecC----------------CCCeEEEEEEEcCCCC-Ceeee
Q 006430 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (645)
Q Consensus 80 ~dpyv~v~l~~~----~~~kT~v~~~t~~P~w~e~f~~~~~~----------------~~~~l~i~v~d~~~~~-~~~iG 138 (645)
+||||+|.+.+. ...+|++++++.||+|||+|.|.+.. ....|.|.||+++.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999651 34699999999999999999999851 1245899999999886 89999
Q ss_pred eEeeccccccCC-ceeEEEEEccCC
Q 006430 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (645)
Q Consensus 139 ~~~i~l~~l~~~-~~~~~w~~l~~~ 162 (645)
++.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999876 567899999543
No 54
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.61 E-value=2.7e-15 Score=138.42 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=86.7
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
.+.|.|+|++|++|+.++.. +. +||||++.+.+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 47899999999999987653 33 89999999853
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccC---CceeEEEEEc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~l 159 (645)
..+.||++++++.||+|||+|.|.+... ...|.|.||+.+.++ +++||++.|+|.++.. ++....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998763 467999999999887 8999999999999874 3466789998
No 55
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.60 E-value=8.8e-15 Score=134.80 Aligned_cols=114 Identities=25% Similarity=0.499 Sum_probs=94.9
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|+..+..+. +||||++.+++.. .+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~~-~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKTK-KRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCEe-eecc
Confidence 58999999999998776554 8999999997654 7999
Q ss_pred cccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCC------------CCeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
+++++.||.|||+|.|.+..+...|.|+|||++.. .+++||.+.+++.++.. ....||+|. +.+.
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~-~~~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE-KRTD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECc-cCCC
Confidence 99999999999999999876667899999998852 38999999999998763 356899994 4445
Q ss_pred CCCCCceEEEEE
Q 006430 166 PPKPGASIQLEL 177 (645)
Q Consensus 166 ~~~~~g~l~l~l 177 (645)
..+..|+|+|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 555689998874
No 56
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.60 E-value=1.3e-14 Score=137.55 Aligned_cols=98 Identities=19% Similarity=0.395 Sum_probs=82.5
Q ss_pred CCcEEEEEE----CCeeeeeeccccCCCCCeeeeEEEEeecCC---------CCeEEEEEEEcCCC-C-CeeeeeEeecc
Q 006430 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF-G-AQIIGTAAIPA 144 (645)
Q Consensus 80 ~dpyv~v~l----~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~---------~~~l~i~v~d~~~~-~-~~~iG~~~i~l 144 (645)
+||||++++ ....+.||+++++|.||+|||+|.|.+... ...|.|+|||.+.+ + |++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 234568999999999999999999999754 34699999999886 4 99999999999
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 006430 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (645)
Q Consensus 145 ~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~ 180 (645)
+.+........|++|+... + ..+|.|+++++..
T Consensus 105 ~~l~~~~~~~~~~~L~~~~-k--~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMDGR-K--ATGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhhCC-C--CcCCEEEEEEEec
Confidence 9998777788899997432 2 4679999999853
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.60 E-value=4e-15 Score=136.44 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=87.0
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|+||+.++..+. +||||++++.+
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~ 49 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSS 49 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCC
Confidence 35689999999999998764443 89999999843
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCC-ceeEEEEEc
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~-~~~~~w~~l 159 (645)
....||++++++.||+|||+|.|++... ...|.|+||+.+.++ +++||.+.|+|.++... +....||+|
T Consensus 50 ~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 50 TSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2368999999999999999999998763 567999999999887 89999999999999644 457789976
No 58
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.3e-14 Score=135.04 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=95.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|+|+|++|++|+.++..+. +||||++.+.+.. .||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998876654 9999999998755 6999
Q ss_pred cccCCCCCeeeeEEEEeecCC----------CCeEEEEEEEcCCCC-CeeeeeEee-cccccc---CCceeEEEEEccCC
Q 006430 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIA---TGELISRWYDIIAP 162 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~~----------~~~l~i~v~d~~~~~-~~~iG~~~i-~l~~l~---~~~~~~~w~~l~~~ 162 (645)
+++++.||.|||+|.|.+... ...|.|+|||++..+ +++||++.+ ++..+. .+.....||+|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999975321 246899999999887 899999986 544444 245667999994 3
Q ss_pred CCCCCCCCceEEEEEEEEeC
Q 006430 163 SGSPPKPGASIQLELKFTPC 182 (645)
Q Consensus 163 ~~~~~~~~g~l~l~l~f~p~ 182 (645)
.+ ...|+|+|++.+.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 356999999999875
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=8.4e-15 Score=134.15 Aligned_cols=116 Identities=25% Similarity=0.376 Sum_probs=93.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeecc
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (645)
|+|+|++|++|+.++..+. +||||++.+++...+||++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 7999999999998776554 8999999997655689999
Q ss_pred ccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC---CeeeeeEeeccccccCCc-eeEEEEEccCCCCC-CCCCCceE
Q 006430 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI 173 (645)
Q Consensus 99 ~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l~~~~-~~~~w~~l~~~~~~-~~~~~g~l 173 (645)
++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||++.+++.++.... ....||+|...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 678999999998875 479999999999987433 34679999443321 22335888
Q ss_pred EEEE
Q 006430 174 QLEL 177 (645)
Q Consensus 174 ~l~l 177 (645)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 7775
No 60
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=8e-15 Score=133.71 Aligned_cols=97 Identities=22% Similarity=0.336 Sum_probs=84.9
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
+.|.|+|++|++|+.++ ..||||++.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 57999999999997532 17899999998865 699
Q ss_pred ccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCcee--EEEEEcc
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~--~~w~~l~ 160 (645)
++.+++ ||.|||+|.|.+......|.|+|||++.++|++||++.|+|.++..+... ..||+|.
T Consensus 36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999884 99999999999988888899999999988899999999999999866544 7899994
No 61
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=2.4e-14 Score=131.32 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--eeeee
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~k 95 (645)
.|.|+|++|++|+..+..+. +||||++.+.+ ....|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58899999999998775543 89999999864 34579
Q ss_pred eccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccC---CceeEEEEEccCCCCCCCCCC
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---~~~~~~w~~l~~~~~~~~~~~ 170 (645)
|++++++.||.|||+|.|.+... ...|.|+|||++..+ +++||++.+++..+.. +...+.|++| .+ .
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~~-------~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-DT-------Q 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-CC-------C
Confidence 99999999999999999999875 467899999999886 8999999999987643 3456789999 32 3
Q ss_pred ceEEEEEEEEeC
Q 006430 171 ASIQLELKFTPC 182 (645)
Q Consensus 171 g~l~l~l~f~p~ 182 (645)
|+|+|.+.+...
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 899999988653
No 62
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.59 E-value=1.1e-14 Score=133.80 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=87.9
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----ee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~~ 92 (645)
+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 889999999999998775543 89999999853 34
Q ss_pred eeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCC--C-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~--~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..||++++++.||+|||+|.|.+... ...|.|.||+.+.+ + +++||.+.+++.++..+....+||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998653 46789999999875 4 89999999999999888888999998
No 63
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=9.9e-15 Score=133.20 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.8
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|+|+|++|++|+..+..+. +||||++.+++....+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 679999999999998775543 99999999988777899
Q ss_pred ccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCC
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~ 163 (645)
++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+ ..++||.+++.+
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999888788999999999987 88999999999999865 668999997664
No 64
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.2e-14 Score=129.61 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~ 155 (645)
+||||++.+.+...++|+++++ .+|.|||+|.|.+... ...|.|.+|+.+... +.++|.+. +..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence 8999999999877789999999 9999999999999874 345788888887665 56666654 555555777899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 006430 156 WYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
||+|....+ ..+..|+|+|+++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999954333 33467999999986
No 65
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=8.6e-15 Score=134.15 Aligned_cols=113 Identities=25% Similarity=0.428 Sum_probs=93.9
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
+|+|+|++|++|+..+..+. +||||++.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999997665443 899999999884557999
Q ss_pred ccc-CCCCCeeeeEEEEeecCC-----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce-----eEEEEEccCCCCC
Q 006430 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (645)
Q Consensus 98 v~~-~t~~P~w~e~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~-----~~~w~~l~~~~~~ 165 (645)
+.+ ++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+.. ...||+|..++|+
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 986 589999999999999877 577999999999866 8999999999999986544 3689999776655
Q ss_pred CCCCCceEEE
Q 006430 166 PPKPGASIQL 175 (645)
Q Consensus 166 ~~~~~g~l~l 175 (645)
+.|.|++
T Consensus 119 ---~~G~~~~ 125 (125)
T cd04051 119 ---PQGVLNF 125 (125)
T ss_pred ---cCeEEeC
Confidence 5588764
No 66
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.57 E-value=1.3e-14 Score=132.64 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----e
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (645)
.+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 4789999999999998775544 89999999864 3
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
.+.||++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999998654 2467999999999887 899999999999843 3334689998
No 67
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.2e-14 Score=132.66 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=88.0
Q ss_pred EceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---
Q 006430 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (645)
-.+.|.|+|++|++|+.++ ..+. +||||++.+.+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 4588999999999999866 3332 89999999842
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+.+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 2457999999999999999999998763 457899999999887 89999999999999877788999986
No 68
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.57 E-value=3.4e-14 Score=137.49 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCC
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~ 320 (645)
.++++.++++|.+|+++|+|+.|.|.+.. .. . ...|.+.|.+|+++||+|+||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-----~--~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-----Y--GPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-----c--chHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 57899999999999999999999987632 00 1 2799999999999999999997 55432210
Q ss_pred CccccChHHHHhhhcCC---CceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCC
Q 006430 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (645)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r 397 (645)
.......+.|... |+++...+... ....++|+|++|||++ ++++||.|+.+..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0023445555544 78876422110 0135899999999998 9999999999954
Q ss_pred CCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh--HHHHHHHHHHHHHhhh
Q 006430 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (645)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp--av~dl~~~F~~rWn~~ 459 (645)
+. .++|..+.+++| +|+++...|.+.|+..
T Consensus 138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 42 457999999999 7999999999999874
No 69
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.57 E-value=1e-14 Score=131.13 Aligned_cols=98 Identities=28% Similarity=0.474 Sum_probs=84.2
Q ss_pred eEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--eee
Q 006430 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~ 93 (645)
|.|.|+|++|++|+.++.. +. +||||++.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 6899999999999987765 43 89999999853 345
Q ss_pred eeeccccCCCCCeeeeEEEEeecCC----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. ..+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 7999999999999999999987754 457999999999987 8999999999999982 3578887
No 70
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.55 E-value=3.9e-14 Score=130.72 Aligned_cols=102 Identities=27% Similarity=0.396 Sum_probs=85.0
Q ss_pred ceEEEEEEEEeeCCCCCCCC-chhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--ee
Q 006430 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~ 92 (645)
.+.|.|+|++|++|+.++.. +. +||||++.+.. ..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 46899999999999987654 32 89999999853 34
Q ss_pred eeeeccccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCC--ceeEEEEEc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~--~~~~~w~~l 159 (645)
+.||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||++.++|.++..+ ++...|.+|
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 443 2346899999999887 89999999999999754 678889988
No 71
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.6e-14 Score=127.24 Aligned_cols=111 Identities=27% Similarity=0.444 Sum_probs=93.1
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeecc
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v 98 (645)
|.|+|++|++|+..+..+. +||||++.+.+...++|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998765443 8999999998766689999
Q ss_pred ccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 006430 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (645)
Q Consensus 99 ~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~ 174 (645)
++++.+|.|||+|.|.+... ...+.|+|||++..+ +++||++.+++.++..+...+.|++|. +.|+ ...|.|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~-~~g~--~~~~~~~ 113 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLD-GQGG--GKLGAVF 113 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECc-CCCC--ccCceEE
Confidence 99999999999999998764 567899999999887 899999999999998888889999994 4333 2346554
No 72
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=3.8e-14 Score=130.06 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=86.6
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--eeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA 94 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~~~~ 94 (645)
+.|.|+|++|+||++++..+. +||||++.+.+ ..+.
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence 789999999999998775443 89999988743 4567
Q ss_pred eeccccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 95 RTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 95 kT~v~~~t~~P~w~e~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
||+++++ .||+|||+|.|+ +.. ....|.|+||+++.++ +++||++.|+|+++..+.....||+|
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999988 999999999998 554 2567899999999887 89999999999999888888999998
No 73
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.55 E-value=3.6e-14 Score=129.93 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC--Ceee
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~~~ 93 (645)
.+.|.|+|++|++|+.++..+. +||||++.+. ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 5689999999999998765543 8999999983 3445
Q ss_pred eeeccccCCCCCeeeeEEEEeecCC----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
.+|++++++.||+|||+|.|...+. ...|.++|||++.++ +++||.+.+++.++..+...+.|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999975332 346899999999887 89999999999999988888999998
No 74
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=5.7e-15 Score=137.80 Aligned_cols=111 Identities=23% Similarity=0.353 Sum_probs=91.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|+||+.++.... +.+||||++++..
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 46889999999999998774311 1289999999854
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
..+.||++++++.||+|||+|.|.++.. ...|.|+|||.+.++ +++||++.+++.. .|++.++|..++...+++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 2356999999999999999999998864 466999999999988 8999999999974 577778999998776654
Q ss_pred C
Q 006430 167 P 167 (645)
Q Consensus 167 ~ 167 (645)
.
T Consensus 131 v 131 (138)
T cd08407 131 I 131 (138)
T ss_pred h
Confidence 3
No 75
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=2.2e-14 Score=135.81 Aligned_cols=116 Identities=29% Similarity=0.375 Sum_probs=85.9
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeeec
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~ 97 (645)
.|.|+|++|++|+.++..+. +. .+. ..+ +...+.+||||+|.+++++ .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~-~~-~~~--~~~------------------------~~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM-AN-VKK--AFL------------------------GEKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh-cc-cee--ccc------------------------cCCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999885431 00 000 000 0112348999999999876 5999
Q ss_pred cccCCCCCeeeeEEEEeecC--CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce-------eEEEEEccCC
Q 006430 98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAP 162 (645)
Q Consensus 98 v~~~t~~P~w~e~f~~~~~~--~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~-------~~~w~~l~~~ 162 (645)
+++++.||+|||+|.|++.. ....|.|+|||++..+ +++||++.+++.++..... ...|+.|+++
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 99999999999999999643 3567899999999986 9999999999999875331 1356666544
No 76
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=4.6e-14 Score=126.93 Aligned_cols=99 Identities=20% Similarity=0.383 Sum_probs=85.2
Q ss_pred cCCCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCCCeeeeeEeeccccccC-CceeEE
Q 006430 78 ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISR 155 (645)
Q Consensus 78 ~~~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~-~~~~~~ 155 (645)
|.+||||++.++++...+|++++++.||+|||+|.|.+.+. ...|.|.|+|.+.+++++||.+.++|.++.. +...+.
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccce
Confidence 45899999999887778999999999999999999999875 4669999999998889999999999999853 445689
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEeC
Q 006430 156 WYDIIAPSGSPPKPGASIQLELKFTPC 182 (645)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~f~p~ 182 (645)
||+|.+ ...|+|+|++.|.|+
T Consensus 91 w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 91 WFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred eEECCC------CCCCEEEEEEEEecC
Confidence 999942 245999999999984
No 77
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.54 E-value=8e-15 Score=136.67 Aligned_cols=107 Identities=22% Similarity=0.358 Sum_probs=88.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|++|+.++..+. +||||++++.+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~ 50 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRK 50 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 35789999999999998775543 89999999843
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
..+.||+|++++.||+|||+|.|.++.. ...|.|+|||++.++ +++||++.|+.. ..|+..++|..++...++
T Consensus 51 ~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~ 127 (136)
T cd08406 51 ISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRK 127 (136)
T ss_pred ccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCC
Confidence 2346999999999999999999998763 567899999999887 899999999766 356677889988766554
No 78
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.53 E-value=4.7e-14 Score=126.35 Aligned_cols=95 Identities=20% Similarity=0.360 Sum_probs=79.4
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++|+..+..+. ....+||||++.++... .||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~~-~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRRV-FRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCEe-Eee
Confidence 689999999999998764321 00128999999997654 699
Q ss_pred ccccCCCCCeeeeEEEEeecCCC--CeEEEEEEEcCCCC-CeeeeeEeeccccccCC
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~--~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~ 150 (645)
++++++.||+|||+|.|.+.+.. ..|.|+|||++.++ +++||++.++|+++..+
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 99999999999999999986543 36899999999987 89999999999999855
No 79
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.53 E-value=4.8e-14 Score=152.71 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEEecCCCccCccCccCCC
Q 006430 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (645)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a-~rGV~VriL~~D~~gs~~~~~~~~~~ 321 (645)
..++++++|.+||++|+|++|.|-|.. +++. . ...+..|.++|.+|| +|||+||||+ |..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~-~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------ 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDD-K--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------ 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCC-C--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch------
Confidence 568999999999999999999886632 2221 0 001258999999985 9999999996 876542210
Q ss_pred ccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 006430 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (645)
Q Consensus 322 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~ 401 (645)
.....+.|..+|+++.+. .+ ++ .+.+|+|++|||++ +||+||+|+...++..
T Consensus 284 -----~~~~~~~L~~~G~~~~i~----vr---i~-------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 -----SMASVKSLQALCVGNDLS----VK---VF-------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH- 335 (369)
T ss_pred -----hhhHHHHHHHcCCCCCce----Ee---ee-------cCCCCceEEEEcCC--------EEEEeccccCchhhcc-
Confidence 234566788888652100 00 00 11379999999998 9999999998844432
Q ss_pred CcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhh
Q 006430 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (645)
Q Consensus 402 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~ 459 (645)
..|.++ ...+|++|.+++..|.++|+..
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 123343 2578999999999999999864
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.53 E-value=1.1e-14 Score=134.89 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=90.6
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999998776554 89999999853
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
..+.+|++++++.||+|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.. .++..++|++++...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 3457999999999999999999998764 457999999999887 8999999999985 456678899998766654
No 81
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.53 E-value=5.5e-14 Score=128.70 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.1
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++|+.++..+. +||||++.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 689999999999998765543 8999999998765 588
Q ss_pred ccccC-CCCCeeeeEEEEeecCC----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 97 ~v~~~-t~~P~w~e~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
++.++ +.||.|||+|.|.+..+ ...|.|+|||.+.+. +++||.+.+++.++..+...+.|++|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999886 467899999999886 89999999999999877788999999
No 82
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.52 E-value=8.2e-14 Score=127.14 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCC-CCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC--Cee
Q 006430 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~~~ 92 (645)
.+.|.|+|++|++|+.++ ..+. +||||++.+. ...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 568999999999999876 3332 8999999984 234
Q ss_pred eeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..+|++++++.||+|||+|.|.+... ...|.|+|||.+..+ +++||++.++|+++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998764 356899999999887 89999999999999988778899998
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.52 E-value=8.6e-14 Score=125.01 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC-----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCC---
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~--- 150 (645)
+||||++++++++ .+|++++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.++|+++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999866 6999999999999999999997543 356899999999887 89999999999999754
Q ss_pred ceeEEEEEccC
Q 006430 151 ELISRWYDIIA 161 (645)
Q Consensus 151 ~~~~~w~~l~~ 161 (645)
.....||+|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45688999954
No 84
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.51 E-value=3.2e-14 Score=159.90 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=117.2
Q ss_pred CceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006430 228 PEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (645)
Q Consensus 228 ~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D 307 (645)
.+.++.+|++...+..+..++++|.+||++|+|++..|-| + ..+.++|+.||+|||+||||+ +
T Consensus 330 ~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p-------d---------~~l~~aL~~Aa~rGV~Vrii~-p 392 (509)
T PRK12452 330 AVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP-------D---------QETLTLLRLSAISGIDVRILY-P 392 (509)
T ss_pred EEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEECCccCC-------C---------HHHHHHHHHHHHcCCEEEEEc-C
Confidence 4556667777666789999999999999999999865543 1 589999999999999999996 7
Q ss_pred CCCccCccCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEE
Q 006430 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (645)
Q Consensus 308 ~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vaf 387 (645)
..+..... ........+.|.++||++.. |.. ...|+|++|||++ +|+
T Consensus 393 ~~~D~~~~--------~~a~~~~~~~L~~aGv~I~~---y~~--------------~~lHaK~~ivD~~--------~a~ 439 (509)
T PRK12452 393 GKSDSIIS--------DQASQSYFTPLLKAGASIYS---YKD--------------GFMHAKIVLVDDK--------IAT 439 (509)
T ss_pred CCCChHHH--------HHHHHHHHHHHHHcCCEEEE---ecC--------------CCeeeeEEEECCC--------EEE
Confidence 64322110 00124456778889999873 221 1469999999998 999
Q ss_pred EccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhhcc
Q 006430 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (645)
Q Consensus 388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~~~ 461 (645)
+|++|+....+. ..|.+..+...++.|.++...|.++|..+..
T Consensus 440 vGS~Nld~RS~~-------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~ 482 (509)
T PRK12452 440 IGTANMDVRSFE-------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHSTE 482 (509)
T ss_pred EeCcccCHhHhh-------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 999999883331 2567889999999999999999999987643
No 85
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.51 E-value=2.7e-14 Score=133.05 Aligned_cols=107 Identities=27% Similarity=0.456 Sum_probs=89.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 35789999999999998776554 89999999843
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecC---CCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
..+.||+|++++.||.|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.. .+....+|++|....++
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~ 127 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR 127 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence 235689999999999999999999875 3456899999999987 8999999999998 36667889999766555
No 86
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.3e-13 Score=151.26 Aligned_cols=129 Identities=27% Similarity=0.399 Sum_probs=107.3
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--e
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~ 91 (645)
+-.+.|.|+|++|++|+.++..+ ++||||++++.. .
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g------------------------------------------~sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGG------------------------------------------TSDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCC------------------------------------------CCCCeeEEEEcCCCC
Confidence 45667999999999999988322 399999999965 4
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~ 167 (645)
.+.+|++.++++||+|||+|.|.+... ...|.+.|||.|+|+ +++||++.++|..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 568999999999999999999997764 567899999999998 9999999999999887666788999965433333
Q ss_pred CCCceEEEEEEEEeCCC
Q 006430 168 KPGASIQLELKFTPCDK 184 (645)
Q Consensus 168 ~~~g~l~l~l~f~p~~~ 184 (645)
+..|+|.++|+|.|.+.
T Consensus 282 ~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTAG 298 (421)
T ss_pred cccceEEEEEEeecCCC
Confidence 34489999999999743
No 87
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.50 E-value=8e-14 Score=133.87 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=86.9
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC----C
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~----~ 90 (645)
..|.|.|+|++|++|+..+..+. +||||++.+. .
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45889999999999998775543 8999999883 2
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC----CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
..++||+|++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++......+.||++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999985432 346899999999988 89999999999999866667888877
No 88
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.50 E-value=1.2e-13 Score=129.04 Aligned_cols=100 Identities=21% Similarity=0.417 Sum_probs=85.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---eeeee
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---~~~~k 95 (645)
|.|+|++|++|+.+ ..+. +||||++++.. ...++
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 57999999999876 4333 89999999973 45589
Q ss_pred eccccCCCCCeeeeEEEEeecCC----------------CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEE
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~----------------~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~ 158 (645)
|++++++.+|.|||+|.|.+... ...|.|+|||.+..+ +++||++.+++.++........||+
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998764 346899999999885 8999999999999987767889999
Q ss_pred ccC
Q 006430 159 IIA 161 (645)
Q Consensus 159 l~~ 161 (645)
|..
T Consensus 118 L~~ 120 (137)
T cd08675 118 LQP 120 (137)
T ss_pred cCC
Confidence 943
No 89
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=3.4e-14 Score=131.30 Aligned_cols=111 Identities=21% Similarity=0.347 Sum_probs=87.9
Q ss_pred EEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--
Q 006430 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (645)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~-- 90 (645)
....|.|.|+|++|+||++++..+ ..||||+|.+-.
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~~~ 47 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFSTG 47 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEECC
Confidence 456788999999999999753222 279999999832
Q ss_pred --eeeeeeccccCCC-CCeeeeEEEEeecCCCC--eEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCC
Q 006430 91 --ATVARTRVLKNSQ-EPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (645)
Q Consensus 91 --~~~~kT~v~~~t~-~P~w~e~f~~~~~~~~~--~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~ 164 (645)
..+.||++++++. +|+|||+|.|.++.+.. .+.|+|||.+..+ +++||++.++.+.. .++..++|.+++...+
T Consensus 48 k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr 126 (135)
T cd08692 48 GLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPE 126 (135)
T ss_pred CcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCC
Confidence 4567999999995 69999999999987543 4678899998876 89999999999864 3455789999877655
Q ss_pred CC
Q 006430 165 SP 166 (645)
Q Consensus 165 ~~ 166 (645)
++
T Consensus 127 ~~ 128 (135)
T cd08692 127 KV 128 (135)
T ss_pred Ce
Confidence 53
No 90
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=1.2e-14 Score=152.05 Aligned_cols=108 Identities=26% Similarity=0.429 Sum_probs=95.7
Q ss_pred eEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC-
Q 006430 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (645)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~- 90 (645)
+..-...|.|+|.+|+||-+||.+|. +||||++.+-.
T Consensus 175 ~~~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD 212 (683)
T KOG0696|consen 175 AHIKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 212 (683)
T ss_pred EEecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccC
Confidence 35567789999999999999999986 99999999832
Q ss_pred ---eeeeeeccccCCCCCeeeeEEEEeecCC--CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCC
Q 006430 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (645)
Q Consensus 91 ---~~~~kT~v~~~t~~P~w~e~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~ 162 (645)
..++||++++.++||+|||+|+|.+.+. ...|.|+|||+|+-+ ++|+|+.++.+++|. ....++||.|++.
T Consensus 213 ~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 213 PKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred CcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 6678999999999999999999999886 456899999999988 999999999999998 5568899999764
No 91
>PRK13912 nuclease NucT; Provisional
Probab=99.49 E-value=5.4e-13 Score=130.06 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=100.7
Q ss_pred chHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCC
Q 006430 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~ 321 (645)
++++.++++|++|+++|+|+.|.|.. ..+.++|.+|++|||+||||+ |..++...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc-------
Confidence 56889999999999999999998742 479999999999999999995 98754321
Q ss_pred ccccChHHHHhhh-cCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 006430 322 VMATHDEETKKFF-KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (645)
Q Consensus 322 ~~~~~~~~~~~~l-~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~ 400 (645)
+......+ +.+++++......... .......+|+|++|||++ ++++|+.|++...+..
T Consensus 88 -----~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 88 -----DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN 146 (177)
T ss_pred -----chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC--------EEEEeCCCCChhHhcc
Confidence 11122222 2346665531100000 001234689999999998 9999999999854432
Q ss_pred CCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHhhhc
Q 006430 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (645)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~rWn~~~ 460 (645)
=+++.+.++.| .++++...|.+.|..+.
T Consensus 147 --------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s~ 175 (177)
T PRK13912 147 --------------------------------NYEVLLITDDTETILKAKEYFQKMLGSCV 175 (177)
T ss_pred --------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 13677788887 66999999999998753
No 92
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.49 E-value=1.4e-13 Score=130.69 Aligned_cols=99 Identities=25% Similarity=0.460 Sum_probs=85.2
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe---
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--- 91 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~--- 91 (645)
..+.|.|+|++|++|++++..+. +||||++.+.+.
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 63 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRE 63 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEcccccc
Confidence 45789999999999998887665 999999998531
Q ss_pred -------------------------eeeeeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCCCeeeeeEeeccc
Q 006430 92 -------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAH 145 (645)
Q Consensus 92 -------------------------~~~kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~ 145 (645)
...+|++++++.+|.|||+|.|.+... ...|.|+|||++ +++||++.++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~ 140 (153)
T cd08676 64 RNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLK 140 (153)
T ss_pred cccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHH
Confidence 236899999999999999999998764 567899999998 899999999999
Q ss_pred cccCCceeEEEEEc
Q 006430 146 TIATGELISRWYDI 159 (645)
Q Consensus 146 ~l~~~~~~~~w~~l 159 (645)
++. +...++||+|
T Consensus 141 ~l~-~~~~d~W~~L 153 (153)
T cd08676 141 DLP-SCGLDSWFKL 153 (153)
T ss_pred HhC-CCCCCCeEeC
Confidence 998 4457999986
No 93
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=2.3e-13 Score=125.75 Aligned_cols=109 Identities=27% Similarity=0.445 Sum_probs=92.2
Q ss_pred eeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC
Q 006430 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (645)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~ 90 (645)
.+.+-.+.|.|+|++|++|+..+..+. +||||++.+.+
T Consensus 7 ~~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~ 44 (131)
T cd04026 7 KISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIP 44 (131)
T ss_pred EEEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEc
Confidence 346777999999999999997665443 89999999853
Q ss_pred ----eeeeeeccccCCCCCeeeeEEEEeecCC--CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCC
Q 006430 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (645)
Q Consensus 91 ----~~~~kT~v~~~t~~P~w~e~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~ 162 (645)
...++|++++++.+|.|||+|.|.+... ...|.|+|||++..+ +++||++.+++.++... ..+.||+|.+.
T Consensus 45 ~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 45 DPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3568999999999999999999998764 456899999999876 89999999999999854 67889999654
No 94
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.48 E-value=5.8e-14 Score=130.75 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=89.2
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC--C--
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~--~-- 90 (645)
..+.|.|+|++|++|+.++..+. +||||++.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45889999999999987665543 8999999983 2
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.+. +...++|++|+...+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2346999999999999999999997642 457899999999887 89999999999876 55677899987766553
No 95
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.47 E-value=3.9e-14 Score=131.94 Aligned_cols=108 Identities=29% Similarity=0.475 Sum_probs=89.3
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (645)
...|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~ 49 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGK 49 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCc
Confidence 356889999999999998775553 89999999842
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
....+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.. .+...++|++++...++
T Consensus 50 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~ 127 (136)
T cd08402 50 RLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRR 127 (136)
T ss_pred ccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCC
Confidence 2356899999999999999999998754 246899999999987 8999999999975 35667889999766544
No 96
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.47 E-value=5.9e-14 Score=130.37 Aligned_cols=109 Identities=33% Similarity=0.489 Sum_probs=89.6
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (645)
...+.|.|+|++|++|++++..+. +||||++.+..
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~ 48 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGR 48 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCc
Confidence 446889999999999998776554 89999999842
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
....+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++. ..+...++|++++...++
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRK 126 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCC
Confidence 2357999999999999999999998653 235899999999988 899999999987 335556789999877665
Q ss_pred C
Q 006430 166 P 166 (645)
Q Consensus 166 ~ 166 (645)
+
T Consensus 127 ~ 127 (134)
T cd08403 127 P 127 (134)
T ss_pred e
Confidence 3
No 97
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=5.9e-14 Score=131.10 Aligned_cols=107 Identities=21% Similarity=0.428 Sum_probs=89.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----e
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (645)
.+.|.|+|++|++|+.++ .+. +||||++.+.. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 478999999999999876 333 89999999853 1
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
...||++++++.||+|||+|.|.++.. ...|.|+||+.+..+ +++||++.++......+.+.++|..++...++
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 346999999999999999999998753 357999999999876 89999999998777778888899998765544
No 98
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.46 E-value=6.7e-13 Score=121.97 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=78.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce-----e
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I 153 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~-----~ 153 (645)
+||||++.+++....+|++++++.+|+|||+|.|.+.. ...|.|+|||++..+ +++||++.++|.++..... .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 89999999987656899999999999999999999864 568999999999986 8999999999999874322 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l 177 (645)
..|+++..+.....+..|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 469999544311234568888775
No 99
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.46 E-value=3.5e-13 Score=126.98 Aligned_cols=90 Identities=31% Similarity=0.652 Sum_probs=81.0
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeeee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT 96 (645)
|.|.|+|++|++|+..+. +. +||||++.++++. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 789999999999987654 32 8999999998765 799
Q ss_pred ccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCC
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~ 150 (645)
++++++.||+|||+|.|.+..+...+.|+|||++.++ +++||.+.+++.++...
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 9999999999999999999988888999999999887 89999999999988754
No 100
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=8.4e-14 Score=128.75 Aligned_cols=106 Identities=31% Similarity=0.520 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----e
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (645)
.+.|.|+|++|++|+..+..+. +||||++.+.+ .
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4789999999999997664443 89999999854 2
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+...++|++|++..++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK 126 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence 356999999999999999999998775 467999999999876 8999999999999 57778899999876555
No 101
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.46 E-value=1e-13 Score=129.13 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=86.9
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC-C---
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-Q--- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~-~--- 90 (645)
..|.|.|+|++|++|+.++..+. +||||++.+. +
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 55889999999999998776554 9999999973 2
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
....+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||++.|...... +...++|+.|+.+.+++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 2346999999999999999999998653 336899999999877 999999987653333 23467899998776653
No 102
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=8.8e-14 Score=130.08 Aligned_cols=108 Identities=19% Similarity=0.373 Sum_probs=87.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+.|.|+|++|+||+.++..+. +||||++.+..
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~ 50 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQ 50 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCc
Confidence 35889999999999998765543 89999999842
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
..+.||++++++.||+|||+|.|.+... ...|.|+||+.+.++ +++||++.+++.... .+..++|+.++.+.++
T Consensus 51 ~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 51 EISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQ 129 (138)
T ss_pred ceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCC
Confidence 1346999999999999999999998753 457899999999877 899999999887443 2345688888766554
No 103
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.46 E-value=9.6e-13 Score=120.67 Aligned_cols=116 Identities=29% Similarity=0.528 Sum_probs=93.5
Q ss_pred EEEEEEEEeeCCCCCC--CCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC-----
Q 006430 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----- 90 (645)
.|+|+|++|++|+.++ ..+ .+||||++++.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGS------------------------------------------IVDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCC------------------------------------------ccCCEEEEEEEeCCCCC
Confidence 5899999999998765 222 289999999842
Q ss_pred eeeeeeccccCCC-CCeeeeEEEEeecCCC-CeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCCCC
Q 006430 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (645)
Q Consensus 91 ~~~~kT~v~~~t~-~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~ 168 (645)
....||++++++. ||.|||+|.|.+..+. ..|.|+|||++..++++||.+.++++++..+ ..|++|.+..+. ..
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PL 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CC
Confidence 3457999988765 9999999999987654 4589999999887889999999999999755 478999777665 33
Q ss_pred CCceEEEEEEE
Q 006430 169 PGASIQLELKF 179 (645)
Q Consensus 169 ~~g~l~l~l~f 179 (645)
..|.|.+++++
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 45899888875
No 104
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.44 E-value=6.1e-13 Score=122.42 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=77.8
Q ss_pred EEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCee
Q 006430 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (645)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~ 92 (645)
..--+.|.|+|++|++|+. +..+. +||||+|.+++.
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~- 59 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ- 59 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-
Confidence 4556899999999999973 33332 899999999876
Q ss_pred eeeeccccCCCCCeeeeEEEEeecC--CCCeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~--~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
++||++++++.||+|||+|.|.... ....|+|+|||++.++ +++||++.++|....
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 5799999999999999999997433 3667999999999986 999999999998665
No 105
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.44 E-value=1.7e-12 Score=121.04 Aligned_cols=114 Identities=24% Similarity=0.395 Sum_probs=90.5
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC--e-----
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A----- 91 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--~----- 91 (645)
..|++++|++|+ ++..+. +||||++++.+ .
T Consensus 3 ~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~~ 39 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFPA 39 (137)
T ss_pred EEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCcccccc
Confidence 578999999997 565554 99999999943 1
Q ss_pred -----eeeeeccccCCCCCee-eeEEEEeecCCCCeEEEEEEEcCCCC----CeeeeeEeeccccccCC---ceeEEEEE
Q 006430 92 -----TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWYD 158 (645)
Q Consensus 92 -----~~~kT~v~~~t~~P~w-~e~f~~~~~~~~~~l~i~v~d~~~~~----~~~iG~~~i~l~~l~~~---~~~~~w~~ 158 (645)
...||++++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||++.+++.++..+ .....||+
T Consensus 40 ~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~ 118 (137)
T cd08691 40 LPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYT 118 (137)
T ss_pred cccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEE
Confidence 2579999999999999 9999999864 457999999976432 69999999999999744 34567999
Q ss_pred ccCCCCCCCCCCceEEEEE
Q 006430 159 IIAPSGSPPKPGASIQLEL 177 (645)
Q Consensus 159 l~~~~~~~~~~~g~l~l~l 177 (645)
| ...+......|+|.|++
T Consensus 119 l-~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 119 L-GRRTPTDHVSGQLTFRF 136 (137)
T ss_pred C-CcCCCCCcEEEEEEEEe
Confidence 9 45445555678888875
No 106
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.43 E-value=6.8e-13 Score=123.21 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=79.3
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC------
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~------ 90 (645)
+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 689999999999998765554 89999999853
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC-----CCeEEEEEEEcCCCC-CeeeeeEeeccccccC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~ 149 (645)
....||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3467999999999999999999998753 457899999999988 9999999999999884
No 107
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.42 E-value=2.7e-13 Score=167.58 Aligned_cols=125 Identities=22% Similarity=0.448 Sum_probs=105.7
Q ss_pred CceeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEE
Q 006430 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (645)
Q Consensus 9 ~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l 88 (645)
...+..+.|.|.|+|++|++|. +..+. +||||++.+
T Consensus 1972 ~~~~~~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~ 2007 (2102)
T PLN03200 1972 ESLLQCLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTL 2007 (2102)
T ss_pred HHHHhhCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEE
Confidence 3446788999999999999997 22232 899999999
Q ss_pred CCeeeeeeccccCCCCCeeeeEEEEeecCCC--CeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 89 ~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~--~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
+++.+.||+|++++.||+|||+|+|.+..+. ..+.|+|||+|.++++.+|.+.|++.++..+....+||+|. ++|+
T Consensus 2008 g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~- 2085 (2102)
T PLN03200 2008 GNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESN- 2085 (2102)
T ss_pred CCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccc-
Confidence 9765569999999999999999998877765 66999999999999889999999999999899999999995 4333
Q ss_pred CCCCce---EEEEEEEEe
Q 006430 167 PKPGAS---IQLELKFTP 181 (645)
Q Consensus 167 ~~~~g~---l~l~l~f~p 181 (645)
..|+ |++++.|.+
T Consensus 2086 --k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2086 --KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred --cCCCcceEEEEEEecC
Confidence 2366 999998865
No 108
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.39 E-value=1.7e-12 Score=118.20 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.8
Q ss_pred CCcEEEEEECCe------eeeeeccccCCCCCeeeeEEEEeecC-CCCeEEEEEEEcCC----CC-CeeeeeEeeccccc
Q 006430 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (645)
Q Consensus 80 ~dpyv~v~l~~~------~~~kT~v~~~t~~P~w~e~f~~~~~~-~~~~l~i~v~d~~~----~~-~~~iG~~~i~l~~l 147 (645)
+||||++.+.+. ...+|++++++.||+|||+|.|.+.. ....|.|+|||++. ++ +++||++.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 899999999653 35899999999999999999998643 45678999999996 55 89999999999999
Q ss_pred cCCceeEEEEEc
Q 006430 148 ATGELISRWYDI 159 (645)
Q Consensus 148 ~~~~~~~~w~~l 159 (645)
..+.....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 977777889999
No 109
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=1.8e-12 Score=118.93 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=89.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCee-eeee
Q 006430 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (645)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~kT 96 (645)
.|+|.|++|++|+.++..+. +||||++.+++.. ..||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT 38 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRD 38 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeecccee
Confidence 37899999999998776554 9999999998744 3588
Q ss_pred ccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 006430 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~ 174 (645)
++++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.+++.+... ..+|+.+..+.... ..|.++
T Consensus 39 ~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~ 113 (124)
T cd04037 39 NYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQ 113 (124)
T ss_pred eEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCcee
Confidence 8999999999999999997644 567899999999986 8999999999987653 23444443333222 346666
Q ss_pred EEEEEEe
Q 006430 175 LELKFTP 181 (645)
Q Consensus 175 l~l~f~p 181 (645)
.+-.+.|
T Consensus 114 ~~~~~~~ 120 (124)
T cd04037 114 WRDSLKP 120 (124)
T ss_pred cCcccCc
Confidence 6555544
No 110
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.35 E-value=5.5e-12 Score=115.26 Aligned_cols=100 Identities=29% Similarity=0.451 Sum_probs=81.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----e
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (645)
.+.|.|+|++|++|+..+..+. +||||++.+.+ .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~ 51 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKA 51 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCC
Confidence 4689999999999997665443 89999999842 3
Q ss_pred eeeeeccccCCCCCeeeeEEEEe-ecCC---CCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEE
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWY 157 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~-~~~~---~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~ 157 (645)
...+|++++++.||+|||+|.|. +... ...+.|+|||.+.+++++||.+.++++++..++..+-|+
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 45799999999999999999996 3321 357899999998778899999999999998766555554
No 111
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.35 E-value=1e-11 Score=111.91 Aligned_cols=66 Identities=33% Similarity=0.531 Sum_probs=56.1
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEc-------CCCC-CeeeeeEeecccc
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT 146 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~-------~~~~-~~~iG~~~i~l~~ 146 (645)
+||||++.++. ..++||+++++|.||+|||+|.|.+.. ...|.+.|||+ |..+ |+++|.+.+.|+.
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 89999999864 346899999999999999999999974 66899999998 3445 8999888887753
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.27 E-value=9e-12 Score=137.58 Aligned_cols=127 Identities=26% Similarity=0.391 Sum_probs=111.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeee
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (645)
...|.|+|.+|+|||+.+..+. .||||.|.++++.+.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~R 41 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCR 41 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhh
Confidence 3568999999999998876654 8999999999999999
Q ss_pred eccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~ 174 (645)
|.++-+++.|.|.|+|.|.++.....|.|-|||.| ++ |+.||.+.|.-++|......+.||.| .+-.......|+|+
T Consensus 42 T~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~ 119 (800)
T KOG2059|consen 42 TATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVH 119 (800)
T ss_pred hhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEE
Confidence 99999999999999999999999999999999999 65 99999999999999877778999999 55555556779999
Q ss_pred EEEEEEeCCCCC
Q 006430 175 LELKFTPCDKNP 186 (645)
Q Consensus 175 l~l~f~p~~~~~ 186 (645)
|++.+.+.....
T Consensus 120 l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 120 LELALTEAIQSS 131 (800)
T ss_pred EEEEeccccCCC
Confidence 999998865543
No 113
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.24 E-value=2.9e-11 Score=135.69 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=112.5
Q ss_pred CceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006430 228 PEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (645)
Q Consensus 228 ~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D 307 (645)
.+.++.+||...++.+...+.++|.+||++|+|++-.|-| ...+.++|..||+|||+|+||+ +
T Consensus 304 ~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip----------------~~~i~~aL~~Aa~rGV~Vril~-p 366 (483)
T PRK01642 304 TVQVIASGPGDPEETIHQFLLTAIYSARERLWITTPYFVP----------------DEDLLAALKTAALRGVDVRIII-P 366 (483)
T ss_pred eEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEcCCcCC----------------CHHHHHHHHHHHHcCCEEEEEe-C
Confidence 4566677887776778889999999999999998632322 1589999999999999999997 6
Q ss_pred CCCccCccCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEE
Q 006430 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (645)
Q Consensus 308 ~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vaf 387 (645)
........ ........+.|.++||++.. |.. ...|.|++|||++ +++
T Consensus 367 ~~~d~~~~--------~~~~~~~~~~L~~~Gv~I~~---y~~--------------~~~HaK~~ivD~~--------~~~ 413 (483)
T PRK01642 367 SKNDSLLV--------FWASRAFFTELLEAGVKIYR---YEG--------------GLLHTKSVLVDDE--------LAL 413 (483)
T ss_pred CCCCcHHH--------HHHHHHHHHHHHHcCCEEEE---eCC--------------CceEeEEEEECCC--------EEE
Confidence 54322111 01123455667789999873 221 1359999999998 999
Q ss_pred EccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHhhhcc
Q 006430 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (645)
Q Consensus 388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~rWn~~~~ 461 (645)
+|+.|+....+.. =+++.+.+.+| .++++.+.|.++|..+..
T Consensus 414 vGS~N~d~rS~~~--------------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 414 VGTVNLDMRSFWL--------------------------------NFEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred eeCCcCCHhHHhh--------------------------------hhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 9999997633311 13788889997 689999999999987643
No 114
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.20 E-value=1.1e-10 Score=106.38 Aligned_cols=124 Identities=20% Similarity=0.377 Sum_probs=86.3
Q ss_pred HHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCc-cCccCccCCCcccc
Q 006430 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS-HDKLGVKTPGVMAT 325 (645)
Q Consensus 247 l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs-~~~~~~~~~~~~~~ 325 (645)
|.++|++|+++|+|+.+.|.. ..+.+.|..++++||+|+|++ |.... ..... ..
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~-------~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDSEAIN-------LA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCS-------HH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCccccchhh-------hH
Confidence 578999999999999886621 588999999999999999997 65311 00000 00
Q ss_pred ChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCC
Q 006430 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (645)
Q Consensus 326 ~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~ 405 (645)
......+.+...|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------ 100 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------ 100 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence 01334445577888765 1469999999998 999999999996552
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChH-HHHHHHHHHHHH
Q 006430 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (645)
Q Consensus 406 ~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpa-v~dl~~~F~~rW 456 (645)
..++..+.+++|. ++++...|.+.|
T Consensus 101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 --------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2369999999995 999999999889
No 115
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.19 E-value=9.6e-11 Score=104.82 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=59.4
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeeeeEEEEeecC-----CCCeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 80 ~dpyv~v~l~~~-----~~~kT~v~~~t~~P~w~e~f~~~~~~-----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
+||||++++.+. ..++|++++++.||+|| +|.|++.. ....|.|+|||++..+ +++||++.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998542 45899999999999999 78887542 2567999999999987 899999999999998
Q ss_pred CC
Q 006430 149 TG 150 (645)
Q Consensus 149 ~~ 150 (645)
.+
T Consensus 100 ~~ 101 (110)
T cd04047 100 KS 101 (110)
T ss_pred cC
Confidence 43
No 116
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.14 E-value=1.3e-10 Score=97.70 Aligned_cols=81 Identities=43% Similarity=0.728 Sum_probs=69.2
Q ss_pred EEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe--eeeee
Q 006430 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (645)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~--~~~kT 96 (645)
|.|+|++|++|+..+..+. .||||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997664443 899999999763 34899
Q ss_pred ccccCCCCCeeeeEEEEeecC-CCCeEEEEEEEcCCCC-CeeeeeEe
Q 006430 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAA 141 (645)
Q Consensus 97 ~v~~~t~~P~w~e~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~ 141 (645)
++++++.+|.|||+|.|.+.. ....|.|+|||.+..+ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 999999999999999999554 4556999999999998 99999873
No 117
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.10 E-value=5.7e-10 Score=95.30 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecC-CCCeEEEEEEEcCCCC-CeeeeeEeecccccc-CCceeEEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~-~~~~~~~w 156 (645)
.+|||.+.+......+|++..++.+|.|||.|.|.+.. ....+.|+|++.+... +.++|.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999988555799999999999999999999987 5678999999998887 899999999999998 66667788
Q ss_pred EEc
Q 006430 157 YDI 159 (645)
Q Consensus 157 ~~l 159 (645)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 865
No 118
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.08 E-value=5.1e-10 Score=122.72 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred ecCCCCccCCcchHHHHHHHHHhccceEEEEE-EEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCC
Q 006430 231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (645)
Q Consensus 231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~-w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~ 309 (645)
++.+|+......+...+.++|.+|+++|+|++ |.+ | ...|.++|..|++|||+|+||+ +..
T Consensus 195 ~v~~~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~-p----------------~~~l~~aL~~Aa~RGV~V~ii~-~~~ 256 (411)
T PRK11263 195 LVWRDNEEHRDDIERHYLKALRQARREVIIANAYFF-P----------------GYRLLRALRNAARRGVRVRLIL-QGE 256 (411)
T ss_pred EEECCCcchHHHHHHHHHHHHHHhceEEEEEecCcC-C----------------CHHHHHHHHHHHHCCCEEEEEe-CCC
Confidence 33344443335677889999999999999986 432 2 1689999999999999999997 665
Q ss_pred CccCccCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEc
Q 006430 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIG 389 (645)
Q Consensus 310 gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvG 389 (645)
++.... ..........|.++||++.. |.. ...|.|++|||++ ++++|
T Consensus 257 ~d~~~~--------~~a~~~~~~~Ll~~Gv~I~~---y~~--------------~~lHaK~~viD~~--------~~~vG 303 (411)
T PRK11263 257 PDMPIV--------RVGARLLYNYLLKGGVQIYE---YCR--------------RPLHGKVALMDDH--------WATVG 303 (411)
T ss_pred CCcHHH--------HHHHHHHHHHHHHCCCEEEE---ecC--------------CCceeEEEEECCC--------EEEEe
Confidence 433211 11123456677889999862 211 1359999999998 99999
Q ss_pred cccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHh
Q 006430 390 GIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWR 457 (645)
Q Consensus 390 G~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~rWn 457 (645)
+.|+.. |.... | ..+.+.|.+| .++.+...|.+.+.
T Consensus 304 S~Nld~-rS~~l-----------------N--------------~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 304 SSNLDP-LSLSL-----------------N--------------LEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred CCcCCH-HHhhh-----------------h--------------hhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 999977 32210 0 2677888887 56888899999996
No 119
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.9e-10 Score=122.80 Aligned_cols=124 Identities=25% Similarity=0.474 Sum_probs=101.8
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeee
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~ 93 (645)
.+...+.++|++|++|..+|..|. +||||.+.++..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk- 328 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK- 328 (1283)
T ss_pred ccceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-
Confidence 345568999999999998776665 9999999998866
Q ss_pred eeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCC------------CCeeeeeEeeccccccCCceeEEEEEccC
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIA 161 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~l~~ 161 (645)
.||+++...+||+|||.|.|...+....|+++|||+|.. +|+|+|+..|-+..+. | +.+-||.| .
T Consensus 329 rrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynl-e 405 (1283)
T KOG1011|consen 329 RRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNL-E 405 (1283)
T ss_pred hhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcch-h
Confidence 599999999999999999999999999999999998743 3799999999888776 3 46789999 4
Q ss_pred CCCCCCCCCceEEEEEEEEeCC
Q 006430 162 PSGSPPKPGASIQLELKFTPCD 183 (645)
Q Consensus 162 ~~~~~~~~~g~l~l~l~f~p~~ 183 (645)
.........|-|+|.++..-..
T Consensus 406 krtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 406 KRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred hccchhhccceEEEEEEEEEcC
Confidence 4444455678888888765543
No 120
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.03 E-value=1.3e-09 Score=93.71 Aligned_cols=72 Identities=43% Similarity=0.774 Sum_probs=64.5
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCc
Q 006430 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (645)
Q Consensus 80 ~dpyv~v~l~~~--~~~kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~ 151 (645)
.+|||++.+... ...+|+++.++.+|.|||+|.|.+... ...|.|+||+.+..+ +.++|.+.+++.++..+.
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 899999999875 568999999999999999999999887 788999999998876 899999999999887554
No 121
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.02 E-value=8.6e-10 Score=118.99 Aligned_cols=171 Identities=25% Similarity=0.432 Sum_probs=122.3
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeee
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~ 94 (645)
|.|.|.|+|..||+||-||..+. ..|.||++++.+.+ .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46889999999999999887654 28999999999877 7
Q ss_pred eeccccCCCCCeee-eEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccC----------CceeEEEEEc
Q 006430 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (645)
Q Consensus 95 kT~v~~~t~~P~w~-e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~----------~~~~~~w~~l 159 (645)
||.|..+++||.|| +-|.|.+... .+.|.|++.|+|..+ ++.||.+.|.++.+-. |....+|||+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 5589998874 567999999999998 8999999999887642 4567899999
Q ss_pred cCCCCCCCCCCceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEeecccccCCCCCceecCCCCccC
Q 006430 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239 (645)
Q Consensus 160 ~~~~~~~~~~~g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~ 239 (645)
++.-. ..+|+|.+-+..--..+...+.+.. -||+. + . ...+-+---+.+.+||..+.++-++++|.
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qss------cgvkf--f-c--ttsip~~yra~iihgfveelvvnddpeyq 184 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSS------CGVKF--F-C--TTSIPFCYRAQIIHGFVEELVVNDDPEYQ 184 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccc------cccee--e-e--cccCccceeehhhhhhhHHhccCCCcchh
Confidence 86532 2569998887744333322222210 01110 0 0 00011111123345788999999999997
Q ss_pred Cc
Q 006430 240 PG 241 (645)
Q Consensus 240 ~~ 241 (645)
|-
T Consensus 185 wi 186 (1169)
T KOG1031|consen 185 WI 186 (1169)
T ss_pred hH
Confidence 63
No 122
>PLN02223 phosphoinositide phospholipase C
Probab=99.02 E-value=2.7e-09 Score=118.07 Aligned_cols=96 Identities=23% Similarity=0.421 Sum_probs=79.2
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCCC-eEEEEEEEcCCCC-CeeeeeEeeccccccCCcee
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~-~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~ 153 (645)
.||||+|.+.+ ....+|++..|+.||+|||+|.|.+..+.. -|.|+|+|+|... ++|+|+..+|+..+..|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 79999999854 344688888889999999999999887654 4699999999876 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
++.+|++..|.+.. ..+|.+++.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 67899888887653 3567666654
No 123
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5.2e-10 Score=122.97 Aligned_cols=109 Identities=32% Similarity=0.558 Sum_probs=89.6
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (645)
.-+|.|.|.|++|++|+.++..+. +||||++.+-.
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~ 332 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDK 332 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCc
Confidence 346999999999999998887664 89999999832
Q ss_pred -eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCC
Q 006430 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (645)
Q Consensus 91 -~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~ 165 (645)
.++.||.+.+++.||+|||+|.|.++.. ...+.|+|||++.++ +++||.+.+.... .+....+|..++...++
T Consensus 333 ~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~ 410 (421)
T KOG1028|consen 333 RLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRK 410 (421)
T ss_pred eeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccC
Confidence 5567999999999999999999988864 456899999999998 7899999887765 45556778877766554
Q ss_pred C
Q 006430 166 P 166 (645)
Q Consensus 166 ~ 166 (645)
+
T Consensus 411 p 411 (421)
T KOG1028|consen 411 P 411 (421)
T ss_pred c
Confidence 3
No 124
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.93 E-value=2.6e-09 Score=124.44 Aligned_cols=126 Identities=25% Similarity=0.378 Sum_probs=102.5
Q ss_pred eEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCe
Q 006430 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (645)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~ 91 (645)
++--.|.|+|.+..|.||+..+.++. +||||++.+..+
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k 1072 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEK 1072 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecce
Confidence 34447899999999999999998887 999999999998
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~ 169 (645)
..++|+++++++||+|||+|.+++.+- ...+.+.|+|+|.-. ++.||.+.++|+.+..+.......+| +... ....
T Consensus 1073 ~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~ 1150 (1227)
T COG5038 1073 SVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVL 1150 (1227)
T ss_pred ecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEec
Confidence 899999999999999999999999864 556799999999887 89999999999999977665555555 3322 1233
Q ss_pred CceEEEEEEEEe
Q 006430 170 GASIQLELKFTP 181 (645)
Q Consensus 170 ~g~l~l~l~f~p 181 (645)
.|.++....|.+
T Consensus 1151 ~g~~~~~~~~r~ 1162 (1227)
T COG5038 1151 DGTLHPGFNFRS 1162 (1227)
T ss_pred ccEeecceecch
Confidence 466666655555
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=7.9e-09 Score=116.63 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=77.9
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCcee
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~ 153 (645)
.||||+|.+.+ ....+|+++.++.||+|||+|.|++..+. .-|.|+|+|+|..+ ++++|++.+|+..|..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999854 45569999999999999999999988764 44699999999877 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
.|++|.+..|.+.. ...|.+++.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 59999888777553 2345555443
No 126
>PHA02820 phospholipase-D-like protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=112.88 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=100.6
Q ss_pred HHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHH-HhhcCCEEEEEEecCCCccCccCccCCCc
Q 006430 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (645)
Q Consensus 244 f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~-~a~rGV~VriL~~D~~gs~~~~~~~~~~~ 322 (645)
...++.+|.+||++|+|++=-|-|+.+...++.. -+..|.++|.+ |++|||+||||+ -........
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~-----yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~~~------- 286 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKIL-----FWPYIEDELRRAAIDRKVSVKLLI-SCWQRSSFI------- 286 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCccc-----chHHHHHHHHHHHHhCCCEEEEEE-eccCCCCcc-------
Confidence 5789999999999999998777776443322221 23689999996 567999999997 322111110
Q ss_pred cccChHHHHhhhcCCCceEE--eccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 006430 323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (645)
Q Consensus 323 ~~~~~~~~~~~l~~~gv~v~--~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~ 400 (645)
+. ......+.|..+|+++. .. .+|... . ......-+|.|++|||+ .|++|..|+...++..
T Consensus 287 ~~-a~~~~l~~L~~~gv~I~Vk~y-~~p~~~----~--~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~ 349 (424)
T PHA02820 287 MR-NFLRSIAMLKSKNINIEVKLF-IVPDAD----P--PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD 349 (424)
T ss_pred HH-HHHHHHHHHhccCceEEEEEE-EcCccc----c--cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence 00 01223444567788763 11 122110 0 00112467999999995 7999999999855532
Q ss_pred CCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC----hHHHHHHHHHHHHHhhh
Q 006430 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRKA 459 (645)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~G----pav~dl~~~F~~rWn~~ 459 (645)
+ ..+.+.+.. ..+++|...|.++|+..
T Consensus 350 n--------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~ 380 (424)
T PHA02820 350 T--------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK 380 (424)
T ss_pred c--------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence 1 256777765 49999999999999864
No 127
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.88 E-value=9.1e-09 Score=119.97 Aligned_cols=128 Identities=27% Similarity=0.450 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCeeeee
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~~~k 95 (645)
-|.|+|+|.+|++|...+..-. ++.|||+.+.+......|
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gk 474 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGK 474 (1227)
T ss_pred eEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCc
Confidence 3789999999999986552111 238999999988766689
Q ss_pred eccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeE-EEEEccCCCCCCCCCCceE
Q 006430 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-RWYDIIAPSGSPPKPGASI 173 (645)
Q Consensus 96 T~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~-~w~~l~~~~~~~~~~~g~l 173 (645)
|++++++.||+|||+|.+.+..-...|.++|||.+... |+.+|++.++|..+....... +-+.++ .. .+..|+|
T Consensus 475 T~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~---~k~vGrL 550 (1227)
T COG5038 475 TRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RN---TKNVGRL 550 (1227)
T ss_pred cceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-cc---CccceEE
Confidence 99999999999999999999988899999999977776 999999999999887443332 233332 22 2455999
Q ss_pred EEEEEEEeCCCCCc
Q 006430 174 QLELKFTPCDKNPL 187 (645)
Q Consensus 174 ~l~l~f~p~~~~~~ 187 (645)
...++|.|......
T Consensus 551 ~yDl~ffp~~e~k~ 564 (1227)
T COG5038 551 TYDLRFFPVIEDKK 564 (1227)
T ss_pred EEeeeeecccCCcc
Confidence 99999999765443
No 128
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.87 E-value=1.1e-08 Score=94.71 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.4
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeeeeEEEEeecCC------------------------CCeEEEEEEEcCC
Q 006430 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (645)
Q Consensus 80 ~dpyv~v~l~~--~~~~kT~v~~~t~~--P~w~e~f~~~~~~~------------------------~~~l~i~v~d~~~ 131 (645)
+||||++.+.+ ..+++|.|..++.| |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999976 56789999999999 99999999986651 2458999999999
Q ss_pred CC-CeeeeeEeeccccccCCc
Q 006430 132 FG-AQIIGTAAIPAHTIATGE 151 (645)
Q Consensus 132 ~~-~~~iG~~~i~l~~l~~~~ 151 (645)
++ +++||.+.++|..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 999999999999887553
No 129
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-08 Score=115.47 Aligned_cols=98 Identities=27% Similarity=0.512 Sum_probs=80.3
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeeeeEEEEeecCCCCe-EEEEEEEcCCCC-CeeeeeEeeccccccCCce
Q 006430 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~-v~~~t~~P~w~e~f~~~~~~~~~~-l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~ 152 (645)
+||||.|++.+ +...+|+ |..|+.+|.|+|+|.|++.-+.-. |+|.|+|+|..+ |+|+|+.++|+..|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 89999999854 5567999 556699999999999999877544 699999999998 999999999999999774
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 006430 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (645)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~f~p 181 (645)
+-.+|++..|+.. ...+|.+++++..
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 4577877777644 3477888887754
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.84 E-value=1.9e-08 Score=113.38 Aligned_cols=96 Identities=22% Similarity=0.449 Sum_probs=79.1
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCcee
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~ 153 (645)
.||||+|.+-+ ....+|++..++.||+|||+|.|++.-+. .-|+|+|+|+|... ++|+|+..+|+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999843 44469999999999999999999977664 55799999999865 999999999999999874
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
+..+|++..|.+.. ..+|.+++.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 46789888887653 3577777765
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=4.7e-08 Score=110.11 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCcee
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~ 153 (645)
.||||+|.+.+ ....+|++++++.||+|||+|.|.+..+. .-|+|+|+|+|... ++++|+..+|+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 79999999853 44569999999999999999999977664 45699999998866 899999999999999874
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 006430 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
+..+|.+..|.+.. ..+|.+++.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 46789888887654 3577777765
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=98.78 E-value=5.6e-08 Score=109.16 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=82.2
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCee-eeEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCce
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w-~e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~ 152 (645)
.||||+|.+.+ ....+|++++++.||+| ||+|.|.+..+. .-|+|.|+|.|... ++++|+..+|++.|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999854 44579999999999999 999999987664 45699999998776 899999999999999774
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEeC
Q 006430 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (645)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~ 182 (645)
+..+|++..|+... ..+|.+++.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 46789888888654 4789888887763
No 133
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.73 E-value=5e-08 Score=85.56 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=57.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeecccccc
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~ 148 (645)
+||||.++++...++||++ +.||.|||+|.|.+. ....+++.|||...-..-.||..-+.+++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 8999999999987789998 489999999999995 4778999999997666779999999998876
No 134
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.68 E-value=5.3e-09 Score=69.75 Aligned_cols=26 Identities=58% Similarity=0.994 Sum_probs=17.8
Q ss_pred eeeccceEEEeccCCCCCCcceEEEEccccCCCC
Q 006430 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (645)
Q Consensus 363 ~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~ 396 (645)
.++||||++|||++ +||+||+|++++
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCC
Confidence 36899999999998 999999999974
No 135
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.68 E-value=2.1e-06 Score=91.53 Aligned_cols=262 Identities=16% Similarity=0.143 Sum_probs=149.6
Q ss_pred hHHHHHHHHHhccceEEEEEEEeecCcc-eeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCC
Q 006430 243 CWEDICHAISEAHHLIYIVGWSVFHKIK-LIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (645)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~i~~w~~~~~~~-L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~ 321 (645)
.+++.++.|++|+++++|..|-.+=... +--++. .-.. +..+...|..++.+||+|||.. .... .+.+
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~--G~~vy~~L~~~~~~gIsiriA~-~~p~-~~~~------ 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQY--GEQVYNTLLALAKSGVKIRIAQ-SYPS-GGPP------ 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchH--HHHHHHHHHHhccCCeEEEEEe-ecCC-CCCC------
Confidence 4688899999999999998775432100 000010 0011 3678999999999999999996 4431 1111
Q ss_pred ccccChHHHHhhhcCCC-ceEEe--ccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCC
Q 006430 322 VMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (645)
Q Consensus 322 ~~~~~~~~~~~~l~~~g-v~v~~--~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~ 398 (645)
..-...|+..| ++++- .+.++. -.-.|-|+.|||++ -=|+||.|+.. |=
T Consensus 142 ------~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW-rS 193 (456)
T KOG3603|consen 142 ------NADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW-RS 193 (456)
T ss_pred ------cccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-hh
Confidence 12234466666 66651 122322 12459999999998 89999999988 32
Q ss_pred CCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--hHHHHHHHHHHHHHhhhcccchhhhhhccccccc
Q 006430 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 476 (645)
Q Consensus 399 d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~G--pav~dl~~~F~~rWn~~~~~~~~~~~~~~~~~~~ 476 (645)
.+ .-..+++.++- -.++||...|.+.|..-....- ..+.|-
T Consensus 194 lT-------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~------~p~~wp 236 (456)
T KOG3603|consen 194 LT-------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL------IPKKWP 236 (456)
T ss_pred cc-------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc------CCCCCc
Confidence 22 11244555543 4899999999999987433310 000010
Q ss_pred ccccccccccccccCccccccCCCccccCCCCcccccccCCCCCceeeEEEeeccCCCCCCCCCCchhhhccccccccCc
Q 006430 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 556 (645)
Q Consensus 477 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~ 556 (645)
.. .+ ..+..+ .|- .- ..+.+....++..|- + |.. ++|
T Consensus 237 ~~--~s---t~~N~~------------~p~----~~---~~dg~~~~~y~saSP---~----~~~-----~~g------- 273 (456)
T KOG3603|consen 237 NC--YS---THYNKP------------LPM----KI---AVDGTPATPYISASP---P----PLN-----PSG------- 273 (456)
T ss_pred cc--cc---cccccc------------Ccc----ee---ecCCCCcceEEccCC---C----CCC-----CCC-------
Confidence 00 00 000000 010 00 011123344554441 1 110 111
Q ss_pred cchhHHHHHHHHHHHhccceEEEe-eeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC
Q 006430 557 VIDKSIQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (645)
Q Consensus 557 ~~e~sI~~~yl~aI~~Ak~~IYIe-nqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~ 635 (645)
.+. =.+|+++.|..|++||||. -+||=+..+. ++ +..- +|=+||.+|+-|||. |++++-.+...++
T Consensus 274 -rt~-DL~ail~~i~~A~~fv~isVMdY~Ps~~y~------k~--~~fw-~iDdaiR~aa~RgV~--vR~lvs~~~~~~~ 340 (456)
T KOG3603|consen 274 -RTW-DLEAILNTIDEAQKFVYISVMDYFPSTIYS------KN--HRFW-EIDDAIRRAAVRGVK--VRLLVSCWKHSEP 340 (456)
T ss_pred -Cch-hHHHHHHHHHHHhhheeeeehhccchheee------cC--cchh-hhhHHHHHHhhcceE--EEEEEeccCCCCc
Confidence 123 3469999999999999996 4666444321 11 2222 677888888889976 8899988877666
Q ss_pred C
Q 006430 636 K 636 (645)
Q Consensus 636 ~ 636 (645)
+
T Consensus 341 ~ 341 (456)
T KOG3603|consen 341 S 341 (456)
T ss_pred h
Confidence 5
No 136
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.48 E-value=2.1e-06 Score=91.58 Aligned_cols=165 Identities=17% Similarity=0.256 Sum_probs=105.3
Q ss_pred ecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCC
Q 006430 231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKT 310 (645)
Q Consensus 231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~g 310 (645)
+.+.|++ .=.++|++.|.+|+++|+|..-...|......+ . . -+.|.++|.+||-|||+||+|+ -...
T Consensus 269 ~~~~grt----~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~----~--fw~iDdaiR~aa~RgV~vR~lv-s~~~ 336 (456)
T KOG3603|consen 269 LNPSGRT----WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H----R--FWEIDDAIRRAAVRGVKVRLLV-SCWK 336 (456)
T ss_pred CCCCCCc----hhHHHHHHHHHHHhhheeeeehhccchheeecC-c----c--hhhhhHHHHHHhhcceEEEEEE-eccC
Confidence 3445553 338899999999999999987776776544332 2 2 2599999999999999999998 3221
Q ss_pred ccCccCccCCCccccChHHHHhhhcCCCceEEec--cCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEE
Q 006430 311 SHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFI 388 (645)
Q Consensus 311 s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafv 388 (645)
+.-.. ..+++.. -......+++..|+|.+. |.-.. ..++....+|.|.+|=+. .||+
T Consensus 337 -~~~~~--m~~~L~S-Lq~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~---------aayI 395 (456)
T KOG3603|consen 337 -HSEPS--MFRFLRS-LQDLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES---------AAYI 395 (456)
T ss_pred -CCCch--HHHHHHH-HHHhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec---------ceee
Confidence 11000 0000000 011122234667777742 21110 122345689999999987 8999
Q ss_pred ccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeee-----EeChHHHHHHHHHHHHHhhhc
Q 006430 389 GGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-----LDGPAAYDVLINFEQRWRKAT 460 (645)
Q Consensus 389 GG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-----i~Gpav~dl~~~F~~rWn~~~ 460 (645)
|--|.+.+||.... -+++. -.|+++.+|...|.++|+..-
T Consensus 396 GTSNws~dYf~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 396 GTSNWSGDYFTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred eccCCCccceeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 99999998874310 01111 357899999999999999753
No 137
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.47 E-value=6.4e-07 Score=99.39 Aligned_cols=136 Identities=20% Similarity=0.251 Sum_probs=97.0
Q ss_pred HHHHHHHHhccceEEEEE-EEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCcc
Q 006430 245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (645)
Q Consensus 245 ~~l~~aI~~Ak~~I~i~~-w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~ 323 (645)
..++.+|.+|+++|+|+. |.+. ...+.++|+.++++||+|+||+ +..+...... +
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~-----------------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~------~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVP-----------------DRELLAALKAAARRGVDVRIII-PSLGANDSAI------V 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCC-----------------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHH------H
Confidence 679999999999999997 6541 1688899999999999999996 7432211100 0
Q ss_pred ccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCc
Q 006430 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (645)
Q Consensus 324 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H 403 (645)
........+.+...|+++.. ++.. ...|.|++|||++ ++++|+.|+...-+..
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~---~~~g-------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYE---YPGG-------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEE---ecCC-------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00013345667788998762 2110 2459999999998 9999999999943321
Q ss_pred CCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHhhhc
Q 006430 404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (645)
Q Consensus 404 ~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~rWn~~~ 460 (645)
+ -.+.+.|+.+ .+.++...|...|..+.
T Consensus 382 ------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 382 ------------N-----------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 0 2567788887 88889999997776653
No 138
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.45 E-value=6.3e-08 Score=107.46 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=81.4
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
-+.+|.|.|+-|+++.+.|.+|- +||||.|++.+
T Consensus 945 n~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~f 982 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRF 982 (1103)
T ss_pred cccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEecccccc
Confidence 35569999999999999998886 99999999965
Q ss_pred --eeeeeeccccCCCCCeeeeEEEEeecCC-----CCeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 91 --~~~~kT~v~~~t~~P~w~e~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
...++|+|++.|+||+|+|+|.|.++.. ...|.|+|.|+|-++ ++|-|++.+.|..+.
T Consensus 983 p~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 983 PAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 5667999999999999999999999875 234799999999998 899999999998876
No 139
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.40 E-value=1.2e-06 Score=98.56 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=75.9
Q ss_pred CCcEEEEEECC-----eeeeeeccccCCCCCeee-eEEEEeecCCC-CeEEEEEEEcCCCC-CeeeeeEeeccccccCCc
Q 006430 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (645)
Q Consensus 80 ~dpyv~v~l~~-----~~~~kT~v~~~t~~P~w~-e~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~ 151 (645)
+.|||+|++-+ .+.++|.|..|.+||+|| |+|+|.+.+|+ .-|+|.|++.|.++ ..|||+++.|+..|..|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 67999999844 444566677789999999 99999999875 45799999999999 579999999999998763
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCCC
Q 006430 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (645)
Q Consensus 152 ~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~~ 186 (645)
.-.||.+. -+..--..+|.+.+...|.....
T Consensus 1165 ---RsVpLkN~-ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1165 ---RSVPLKNG-YSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred ---eeeecccC-chhhhhhhhheeeeEeccccCcc
Confidence 34566322 22111235677777766654433
No 140
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.37 E-value=9.3e-08 Score=106.14 Aligned_cols=90 Identities=20% Similarity=0.459 Sum_probs=74.3
Q ss_pred eeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCC-------------------------------------CCe
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF-------------------------------------GAQ 135 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~-------------------------------------~~~ 135 (645)
.-|.|+++|+||.|+|+|.|.+.... ..+.+.+||+|-- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 46889999999999999999998864 4689999997611 168
Q ss_pred eeeeEeeccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCC
Q 006430 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (645)
Q Consensus 136 ~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~ 185 (645)
|+|++.||+.+|.. ...+.||.| .+.....+..|.++|+++.......
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccc
Confidence 99999999999984 357899999 6777777889999999998775543
No 141
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.15 E-value=1.8e-06 Score=100.56 Aligned_cols=108 Identities=19% Similarity=0.402 Sum_probs=89.3
Q ss_pred ceeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEEC
Q 006430 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (645)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~ 89 (645)
+.+.|-+|+|.|-|.-|++|+-...+.. .||||+.++.
T Consensus 1517 LsIsY~~~~LtImV~H~K~L~~Lqdg~~------------------------------------------P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1517 LSISYNNGTLTIMVMHAKGLALLQDGQD------------------------------------------PDPYVKTYLL 1554 (1639)
T ss_pred EEEEEcCceEEEEhhhhcccccccCCCC------------------------------------------CCcceeEEec
Confidence 3467889999999999999964322222 8999999995
Q ss_pred C----eeeeeeccccCCCCCeeeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEc
Q 006430 90 Q----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 90 ~----~~~~kT~v~~~t~~P~w~e~f~~~-~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
. ..+.||+|+++|.||.|||..+.. .+.. ...|.++||..+.+. +.++|.+.|+|.++....+..+||+|
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 3 566899999999999999998887 3222 457899999998887 89999999999999887778899999
No 142
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.03 E-value=6.8e-06 Score=91.93 Aligned_cols=106 Identities=17% Similarity=0.362 Sum_probs=82.2
Q ss_pred CCcEEEEEECC---eeeeeeccccCCCCCeeeeEEEEeecCC----------------CCeEEEEEEEc-CCCC-Ceeee
Q 006430 80 SDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDD-DVFG-AQIIG 138 (645)
Q Consensus 80 ~dpyv~v~l~~---~~~~kT~v~~~t~~P~w~e~f~~~~~~~----------------~~~l~i~v~d~-~~~~-~~~iG 138 (645)
+|||+.+...+ ....+|+++++|.+|.|+|.|.|.+... ...|.+++|++ +... ++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 99999999855 2235999999999999999999998775 23478899984 4444 89999
Q ss_pred eEeeccccccCCceeEEEEEccCC-CCC---CCCCCceEEEEEEEEeCCCC
Q 006430 139 TAAIPAHTIATGELISRWYDIIAP-SGS---PPKPGASIQLELKFTPCDKN 185 (645)
Q Consensus 139 ~~~i~l~~l~~~~~~~~w~~l~~~-~~~---~~~~~g~l~l~l~f~p~~~~ 185 (645)
++.+++..+........||.|... +|+ .....|.+++.++|+-....
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 999999988866677899999532 222 33456899999999875433
No 143
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=97.82 E-value=0.00015 Score=80.78 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCC
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~ 320 (645)
......+.++|.+|+++|+|+ +| ||. + ...+.++|..++++||+|+||+ -+..+.+++.-...
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~----TP--YF~--p--------~~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~ 312 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTIC----TP--YFN--L--------PAILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDE 312 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEE----eC--CcC--C--------CHHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCcc
Confidence 356778889999999999987 44 333 1 1689999999999999999997 44422221100000
Q ss_pred Cccc-cChHHH-----------HhhhcCCC---ceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceE
Q 006430 321 GVMA-THDEET-----------KKFFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT 385 (645)
Q Consensus 321 ~~~~-~~~~~~-----------~~~l~~~g---v~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~v 385 (645)
.+.. ..-... .+.+.++| |++.. ++ .+.-|-|.++||++ +
T Consensus 313 ~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~--------~ 367 (451)
T PRK09428 313 PFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR--------W 367 (451)
T ss_pred HHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEe---cC--------------CCcceEEEEEEeCC--------E
Confidence 0000 000001 01122344 44331 11 24569999999998 9
Q ss_pred EEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHhhh
Q 006430 386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (645)
Q Consensus 386 afvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~rWn~~ 459 (645)
+++||.|+...-|.- | ..+.+.|..|. ..|...|.+....-
T Consensus 368 ~~iGS~Nld~RS~~l---------------n-----------------~E~~l~i~d~~-~~l~~~~~~E~~~i 408 (451)
T PRK09428 368 MLLTGNNLNPRAWRL---------------D-----------------LENALLIHDPK-QELAEQREKELELI 408 (451)
T ss_pred EEEcCCCCChhHhhh---------------c-----------------ccceEEEECCh-HHHHHHHHHHHHHH
Confidence 999999999855532 1 15677888877 88888888877653
No 144
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.78 E-value=2.6e-05 Score=70.75 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=63.8
Q ss_pred CCcEEEEEE---CCeeeeeeccccCCCCCeeeeEEEEeecC----------------CCCeEEEEEEEcCCC--------
Q 006430 80 SDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF-------- 132 (645)
Q Consensus 80 ~dpyv~v~l---~~~~~~kT~v~~~t~~P~w~e~f~~~~~~----------------~~~~l~i~v~d~~~~-------- 132 (645)
.++||++.+ ++....+|+++.++-.|.|+.++.|+++- ...++.++||+...-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 799999996 34556799999999999999999998661 134688999986532
Q ss_pred ---CCeeeeeEeecccccc-CCceeEEEEEc
Q 006430 133 ---GAQIIGTAAIPAHTIA-TGELISRWYDI 159 (645)
Q Consensus 133 ---~~~~iG~~~i~l~~l~-~~~~~~~w~~l 159 (645)
+|-.+|.+.||+.++. ....+++|||+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2568999999999987 34567899985
No 145
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.64 E-value=0.0006 Score=70.47 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=98.8
Q ss_pred ccCCeeEEeecccccCCCCCceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHH
Q 006430 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (645)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~ 288 (645)
..-.++++|+.-. .+ +. ..+-+.+.+.|++|++.|-|..=.|++ . .-|.
T Consensus 116 ~g~Tr~~vy~qPp--~~--------~~-----p~IKE~vR~~I~~A~kVIAIVMD~FTD-------~---------dIf~ 164 (284)
T PF07894_consen 116 KGVTRATVYFQPP--KD--------GQ-----PHIKEVVRRMIQQAQKVIAIVMDVFTD-------V---------DIFC 164 (284)
T ss_pred cCCceEEEEeCCC--CC--------CC-----CCHHHHHHHHHHHhcceeEEEeecccc-------H---------HHHH
Confidence 4457899998631 11 11 346778899999999999998776643 1 4566
Q ss_pred HHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCC--------CceEEe--ccCCCCCCccceeee
Q 006430 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHS--------SVNCVL--APRYASSKLSYFKQQ 358 (645)
Q Consensus 289 ~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~--------gv~v~~--~~~~~~~~~~~~~~~ 358 (645)
|+|.++-+|||-||||+ |..+... +.++.... ++.|+. -..|-.+.
T Consensus 165 DLleAa~kR~VpVYiLL-D~~~~~~----------------Fl~Mc~~~~v~~~~~~nmrVRsv~G~~y~~rs------- 220 (284)
T PF07894_consen 165 DLLEAANKRGVPVYILL-DEQNLPH----------------FLEMCEKLGVNLQHLKNMRVRSVTGCTYYSRS------- 220 (284)
T ss_pred HHHHHHHhcCCcEEEEe-chhcChH----------------HHHHHHHCCCChhhcCCeEEEEecCCeeecCC-------
Confidence 76655559999999997 9875322 22222222 233331 11111111
Q ss_pred eecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeee
Q 006430 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHC 438 (645)
Q Consensus 359 ~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~ 438 (645)
..++...-|+|+++||+. .+++|..=+++. +..-| +-+..
T Consensus 221 g~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs--~~~~~------------------------------r~~~~ 260 (284)
T PF07894_consen 221 GKKFKGQLKEKFMLVDGD--------KVISGSYSFTWS--SSRVH------------------------------RNLVT 260 (284)
T ss_pred CCeeeCcccceeEEEecc--------cccccccceeec--ccccc------------------------------cceeE
Confidence 123445779999999998 888888644441 11111 24678
Q ss_pred eEeChHHHHHHHHHHHHHhh
Q 006430 439 RLDGPAAYDVLINFEQRWRK 458 (645)
Q Consensus 439 ~i~Gpav~dl~~~F~~rWn~ 458 (645)
.++|.+|......|..-...
T Consensus 261 ~~tGq~Ve~FD~EFR~LyA~ 280 (284)
T PF07894_consen 261 VLTGQIVESFDEEFRELYAQ 280 (284)
T ss_pred EEeccccchHhHHHHHHHHh
Confidence 99999999999999886543
No 146
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=9.5e-05 Score=76.63 Aligned_cols=103 Identities=23% Similarity=0.329 Sum_probs=81.8
Q ss_pred EceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----
Q 006430 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (645)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~---- 90 (645)
..+-|.|+++++..|.++|.++. +||||..++..
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~ 268 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGK 268 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcch
Confidence 34568999999999999988887 99999999853
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~ 161 (645)
.-+.||.+.|++.+|.||++|.+.+.+. ...+.|.|||.+.-+ .+++|-+... .+..++...+|+..+.
T Consensus 269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr~~~ 341 (362)
T KOG1013|consen 269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGRCLF 341 (362)
T ss_pred hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc--ccccchhhcCcccccc
Confidence 3456999999999999999999998875 456899999999885 7888875543 3455556667776543
No 147
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.55 E-value=6.7e-05 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred eeccceEEEeccCCCCCCcceEEEEccccCCC
Q 006430 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (645)
Q Consensus 364 ~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~ 395 (645)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4789999999998 99999999987
No 148
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00025 Score=78.56 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=69.1
Q ss_pred CCcEEEEEECC------eeeeeeccccCCCCCeeeeEEEEeecCCC----CeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 80 ~dpyv~v~l~~------~~~~kT~v~~~t~~P~w~e~f~~~~~~~~----~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
.-|||+|.+-+ .+++.|+...++..|.|||+|.|-+.+.. -.|.+.|+|.+..+ |..+|.+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 56999998732 56678999999999999999999988753 34889999999988 899999999999999
Q ss_pred CCceeEEEEEc
Q 006430 149 TGELISRWYDI 159 (645)
Q Consensus 149 ~~~~~~~w~~l 159 (645)
.......|+||
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 77778889999
No 149
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00013 Score=76.78 Aligned_cols=108 Identities=22% Similarity=0.389 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----e
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~ 91 (645)
.|.|.|.|++|++|..+..... .++|||+|++.. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c~ 306 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFCI 306 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCcee
Confidence 4789999999999976432111 289999999843 4
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEE-cCCCC-CeeeeeEeeccccccCCc-eeEEEEEccCCCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSG 164 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d-~~~~~-~~~iG~~~i~l~~l~~~~-~~~~w~~l~~~~~ 164 (645)
.+.+|+...+|.+|.+.....|.-.++..-|.+.||. ..+.. +.|+|.+.+-++++..+. ...+||+++....
T Consensus 307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 4569999999999999999999988889899999996 44555 789999999999998766 7789999975543
No 150
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=97.42 E-value=0.00033 Score=67.54 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC
Q 006430 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (645)
Q Consensus 559 e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~~ 634 (645)
...+.+.++.+|.+|++.|+|+++||.+.. .....+|.++|..|+++|++ |+||+...+...
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~rGv~--V~il~~~~~~~~ 80 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARRGVK--VRILVDEWSNTD 80 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHCCCE--EEEEEcccccCC
Confidence 467999999999999999999999999741 01125899999999999987 788888777654
No 151
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.39 E-value=0.00013 Score=77.40 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=80.3
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeeeEEEEeecCC------------CCeEEEEEEEcCCCC--CeeeeeEe
Q 006430 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (645)
Q Consensus 80 ~dpyv~v~l~----~~~~~kT~v~~~t~~P~w~e~f~~~~~~~------------~~~l~i~v~d~~~~~--~~~iG~~~ 141 (645)
.|.|+++++. .....+|.|+++|.+|.|+|.|.+.+... ...++|+++++..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 6889988863 34457999999999999999999998873 234899999987764 89999999
Q ss_pred eccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 006430 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (645)
Q Consensus 142 i~l~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~ 180 (645)
+.+..|....+.+..++|.+... ..+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence 99999998888999999965432 3579999998853
No 152
>PRK13912 nuclease NucT; Provisional
Probab=97.33 E-value=0.00053 Score=66.91 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 006430 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 633 (645)
Q Consensus 560 ~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p~~ 633 (645)
..+...++.+|.+|++.|+|+. |++++ .+|+++|..|++||++ |+|+++...+.
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa~RGV~--VrIlld~~~~~ 85 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAAKRGVK--ISIIYDYESNH 85 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHHHCCCE--EEEEEeCcccc
Confidence 4678899999999999999996 77665 3799999999999987 88999987643
No 153
>PF13918 PLDc_3: PLD-like domain
Probab=97.18 E-value=0.0012 Score=63.88 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=51.0
Q ss_pred CceecCCCCccCCcchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 006430 228 PEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (645)
Q Consensus 228 ~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a-~rGV~VriL~ 305 (645)
|..+...|++.. .++|+..|++|+++|||+.-.+-|.+.. ..+.+- +..|.++|.+|| .|||+||+|+
T Consensus 72 Pp~~~~~gRT~D----ldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~~~~Y-----WP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 72 PPPFCPKGRTLD----LDAILSVIDSAKKFIYISVMDYLPTSRY-SKPNRY-----WPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CcccCCCCCCcH----HHHHHHHHHhHhheEEEEEeecCCeeec-CCCCCc-----chhHHHHHHHHHHHcCCeEEEEE
Confidence 555566666542 6899999999999999998887774432 111122 468999999887 8999999997
No 154
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.99 E-value=0.00049 Score=58.39 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=55.9
Q ss_pred cEEEE--EECCeeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEE
Q 006430 82 PYVTV--VVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW 156 (645)
Q Consensus 82 pyv~v--~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w 156 (645)
-|++- .++.....||.+...+.||+|.|+|.|++.-. ...|-|.|+. ..-+...||.+.+.++++. .++.++|
T Consensus 23 i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW 100 (103)
T cd08684 23 IYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHW 100 (103)
T ss_pred eEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhh
Confidence 46663 34555668999999999999999999997653 3446777777 2334889999999999877 3456777
Q ss_pred EE
Q 006430 157 YD 158 (645)
Q Consensus 157 ~~ 158 (645)
.+
T Consensus 101 ~e 102 (103)
T cd08684 101 LE 102 (103)
T ss_pred hc
Confidence 64
No 155
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.98 E-value=0.00045 Score=80.38 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=75.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCee-ee
Q 006430 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VA 94 (645)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~-~~ 94 (645)
.-.++|.+.+|-+|.+.|.++. +|||+.+.+++.. .-
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLD 649 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhh
Confidence 3457799999999999888876 9999999998733 35
Q ss_pred eeccccCCCCCeeeeEEEEeecCC-CCeEEEEEEEcCCCC-CeeeeeEeecccc
Q 006430 95 RTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (645)
Q Consensus 95 kT~v~~~t~~P~w~e~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~ 146 (645)
++.-+.+|+||+|.+-|.+...-+ ...+.++|+|+|.++ |+.||+..+.|+.
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 788899999999999999886665 455799999999998 9999999998864
No 156
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.00021 Score=74.15 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=92.1
Q ss_pred eEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC----ee
Q 006430 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (645)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~----~~ 92 (645)
..++.+|.+|++|.+++.++. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 457899999999999998886 89999999854 23
Q ss_pred eeeeccccCCCCCeeeeEEEEeecC-C---CCeEEEEEEEcCCCC-CeeeeeEeeccccccCCce--eEEEEEccCCCCC
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAH-P---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISRWYDIIAPSGS 165 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~-~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~--~~~w~~l~~~~~~ 165 (645)
..+|++..++.||.|+|+.....-. . .+.+.+.|+|.+.+. ++++|+..+++..+...+. ...||.-.-+.+.
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 3689999999999999987665222 1 344678889988887 8999999999888874432 2334432112111
Q ss_pred ----CCCCCceEEEEEEEEeCCCCC
Q 006430 166 ----PPKPGASIQLELKFTPCDKNP 186 (645)
Q Consensus 166 ----~~~~~g~l~l~l~f~p~~~~~ 186 (645)
....+|++.+++.|.......
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~~~l 235 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTTPGL 235 (362)
T ss_pred ccccchhhccceeeeeccCcCCCce
Confidence 235678899999887654443
No 157
>PLN02964 phosphatidylserine decarboxylase
Probab=96.83 E-value=0.0022 Score=73.89 Aligned_cols=86 Identities=22% Similarity=0.375 Sum_probs=69.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeE-EEEEEEcCCCC-CeeeeeEeeccccccCCcee--EE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNL-EIQVKDDDVFG-AQIIGTAAIPAHTIATGELI--SR 155 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l-~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~--~~ 155 (645)
.|+|..+..-+.+++||.+.++|.||+|||...|.+.+..... .|.|||.+.++ ++.+|.+.+++..+...+.. .+
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 6888887777777799999999999999999999988765554 99999999998 89999999988887754332 22
Q ss_pred EEEccCCCCC
Q 006430 156 WYDIIAPSGS 165 (645)
Q Consensus 156 w~~l~~~~~~ 165 (645)
-|.++++++.
T Consensus 148 aF~lfD~dgd 157 (644)
T PLN02964 148 SFDLLDPSSS 157 (644)
T ss_pred HHHHHCCCCC
Confidence 3667676554
No 158
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=96.75 E-value=0.01 Score=68.99 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=88.8
Q ss_pred cCCCCccCCcchHHHHHHHHHhccc----eEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006430 232 LDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (645)
Q Consensus 232 l~~g~~y~~~~~f~~l~~aI~~Ak~----~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D 307 (645)
|..||..+.+.+.+.+.+.|.+||+ +|+|.+--+ . ...+.++|..|+++||+|++|+ .
T Consensus 494 l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~-----------D~~ii~aL~~As~aGV~V~Liv-R 555 (672)
T TIGR03705 494 LLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V-----------DPDLIDALYEASQAGVKIDLIV-R 555 (672)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C-----------CHHHHHHHHHHHHCCCeEEEEE-e
Confidence 3445555556677777778999998 999874322 1 2689999999999999999997 6
Q ss_pred CCCccCccCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEE
Q 006430 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (645)
Q Consensus 308 ~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vaf 387 (645)
++=+.. +|.. |. ..++.|. .+- +-... |-|+...... +...+|
T Consensus 556 GiCcL~-pgip--g~-------------sd~i~v~---siv------------~r~Le-h~rIy~f~~~-----~d~~~~ 598 (672)
T TIGR03705 556 GICCLR-PGVP--GL-------------SENIRVR---SIV------------GRFLE-HSRIYYFGNG-----GEEKVY 598 (672)
T ss_pred cccccC-CCCC--CC-------------CCCEEEE---EEh------------hHhhC-cCEEEEEeCC-----CCcEEE
Confidence 553321 1111 00 1233332 110 11223 6777777532 123999
Q ss_pred EccccCCCCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHH-HHHH-HHHHHHhhhc
Q 006430 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY-DVLI-NFEQRWRKAT 460 (645)
Q Consensus 388 vGG~ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gpav~-dl~~-~F~~rWn~~~ 460 (645)
+|+.|+...-++- -..+.+.|..|... .+.. .+...|+...
T Consensus 599 igSAn~m~Rnl~~--------------------------------r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~ 641 (672)
T TIGR03705 599 ISSADWMTRNLDR--------------------------------RVEVLFPIEDPTLKQRVLDEILEAYLADNV 641 (672)
T ss_pred EECCCCCCCcccc--------------------------------eEEEEEEEcCHHHHHHHHHHHHHHhCcccc
Confidence 9999987733321 14889999998554 4445 6777776643
No 159
>PRK05443 polyphosphate kinase; Provisional
Probab=96.70 E-value=0.0096 Score=69.58 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCcchHHHHHHHHHhccc----eEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCc
Q 006430 239 KPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (645)
Q Consensus 239 ~~~~~f~~l~~aI~~Ak~----~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~ 314 (645)
.++.+.+.+.++|.+||+ +|+|.+--+ . ...+.++|..|+++||+|+||+ .++=+. .
T Consensus 510 ~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l------~-----------d~~ii~aL~~As~~GV~V~liV-RGiC~l-~ 570 (691)
T PRK05443 510 LRERLLELIDREIANARAGKPARIIAKMNSL------V-----------DPQIIDALYEASQAGVKIDLIV-RGICCL-R 570 (691)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC------C-----------CHHHHHHHHHHHHCCCeEEEEE-eccccc-C
Confidence 335677778889999998 999874322 1 2689999999999999999997 665332 1
Q ss_pred cCccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCC
Q 006430 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (645)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~ 394 (645)
+|+.. . ..++.|. . ++ +-... |-|+...++. +...+|+|+.|+.
T Consensus 571 pgipg--~-------------sd~i~v~---s-------~v-----~r~Le-h~rIy~f~~g-----d~~~~~iGSAn~d 614 (691)
T PRK05443 571 PGVPG--L-------------SENIRVR---S-------IV-----GRFLE-HSRIYYFGNG-----GDEEVYISSADWM 614 (691)
T ss_pred CCCCC--C-------------CCCEEEH---H-------HH-----HHHHh-cCEEEEEeCC-----CCcEEEEECCCCC
Confidence 21110 0 1112221 0 00 01112 4566666421 1129999999988
Q ss_pred CCCCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHhhhcc
Q 006430 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (645)
Q Consensus 395 ~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~rWn~~~~ 461 (645)
..-++- =.++.+-|..| .++.+...|...|....+
T Consensus 615 ~Rsl~~--------------------------------r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~k 650 (691)
T PRK05443 615 PRNLDR--------------------------------RVEVLFPILDPRLKQRLLEILEIQLADNVK 650 (691)
T ss_pred cccccc--------------------------------eEEEeEEEeCHHHHHHHHHHHHHHHhhhhh
Confidence 733321 14889999988 566777889999987544
No 160
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.60 E-value=0.085 Score=56.13 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=82.0
Q ss_pred chHHHHHHHHHhcc-----ceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccC
Q 006430 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak-----~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~ 316 (645)
+-|+.+++.|++|- .+|.|+-|.... ...+.++|.+||+.|-+|-+++ .----+.
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~----------------~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD--- 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVAS----------------NSPIVNALIEAAENGKQVTVLV-ELKARFD--- 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-T----------------T-HHHHHHHHHHHTT-EEEEEE-STTSSST---
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecCC----------------CCHHHHHHHHHHHcCCEEEEEE-EEecccc---
Confidence 45777888888873 788888885532 3799999999999999999997 3221111
Q ss_pred ccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCC
Q 006430 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (645)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~ 396 (645)
...+-.|.+.|+++||+|.+ ..+ .+.-|-|+++|=-+..+ .-+..+++|-=|....
T Consensus 78 -------Ee~Ni~Wa~~Le~aGv~Viy--G~~--------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~ 133 (352)
T PF13090_consen 78 -------EENNIHWAKRLEEAGVHVIY--GVP--------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK 133 (352)
T ss_dssp -------TCCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT
T ss_pred -------HHHHhHHHhhHHhcCeEEEc--CCC--------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc
Confidence 11233467789999999984 222 13459999999443111 1234555554433330
Q ss_pred CCCCCCcCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHH
Q 006430 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (645)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~r 455 (645)
-..-+-|..+.-.-| .+.|+...|..-
T Consensus 134 --------------------------------TAr~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 134 --------------------------------TARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp --------------------------------HCCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred --------------------------------chhheecceeecCCHHHHHHHHHHHHHH
Confidence 012467988887776 788998888653
No 161
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.45 E-value=0.00058 Score=79.49 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=81.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEe---ecCC-------CCeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIP---LAHP-------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~---~~~~-------~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
+|||..+.+-++. ..|-++.+|+||.|+++..|. +... ...+.|+|+|.+..+ ++++|.......-+.
T Consensus 227 sdp~a~v~f~~qs-~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~ 305 (1105)
T KOG1326|consen 227 SDPDAAVEFCGQS-KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV 305 (1105)
T ss_pred CCchhhhhccccc-ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe
Confidence 9999999987766 489999999999999998886 2221 234689999999988 999999877654443
Q ss_pred CCceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCCCccccCCCCCCCcCCccccccccccCCeeEEee
Q 006430 149 TGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQ 218 (645)
Q Consensus 149 ~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~~~~~~gv~~~p~~~~v~~s~~P~~~gn~v~~~~ 218 (645)
. .....|+++.... ...|.+.+........+.-.+... -..+..++++...-|......++++-
T Consensus 306 ~-~p~lkw~p~~rg~----~l~gd~l~a~eliq~~~~i~~p~~-~~~~~~~~vp~~iRp~~q~~~~evl~ 369 (1105)
T KOG1326|consen 306 Q-CPALKWVPTMRGA----FLDGDVLIAAELIQIGKPIPQPPP-QREIIFSLVPKKIRPKTQIGKAELLM 369 (1105)
T ss_pred c-CCccceEEeeccc----ccccchhHHHHHHhhcCCCCCCCc-ccccceeccccCCCcceeeeeeehhh
Confidence 2 3456799995331 223544443322222221000000 00122344555666666655665554
No 162
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.077 Score=51.57 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCC
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~ 320 (645)
+...+.|...|+.|++...+..|+... | -.-+.+.|..+..+||++|||. +...+..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~s--------------G-~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITES--------------G-LSLLFDLLLDLVNKGVKGKILT-SDYLNFT------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCc--------------c-HHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence 468999999999999999988887532 2 3678899999999999999996 5543322
Q ss_pred CccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 006430 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (645)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~ 400 (645)
.+...++.+.-.+|+|+++.. ....+|-|-.|.-.+ ..-.|++|+.|++++-.-.
T Consensus 95 -----dP~al~~Ll~~~nve~r~~~~---------------~~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 95 -----DPVALRKLLMLKNVELRVSTI---------------GSANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred -----CHHHHHHHHhhhccceEEEec---------------CccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 234445555555688875311 123457777776433 2248999999999965432
Q ss_pred CCcCCcCCCCccccCCCCCCCCCCCCCCCCCCce-eeeeeEeChHHHHHHHHHHHHHhh
Q 006430 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWRK 458 (645)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWh-Dv~~~i~Gpav~dl~~~F~~rWn~ 458 (645)
. | .|- -+...-.|-.|..+...|...|..
T Consensus 150 n-~----------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 150 N-E----------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred C-H----------------------------HHHhhhccccccchHHHHHHHHHHHHHh
Confidence 1 0 111 223345689999999999999983
No 163
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.37 Score=54.87 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=63.6
Q ss_pred chHHHHHHHHHhcc-----ceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEecCCCccCccC
Q 006430 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (645)
Q Consensus 242 ~~f~~l~~aI~~Ak-----~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~ 316 (645)
+.|+.+.+.|++|- =.|-++-|.. ++..+|.++|.+||+.|-+|-+|| .-- .-
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqTLYRt----------------~~dSpIV~ALi~AA~nGKqVtvlV-ELk---AR-- 409 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQTLYRT----------------SKDSPIVRALIDAAENGKQVTVLV-ELK---AR-- 409 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEEEEec----------------CCCCHHHHHHHHHHHcCCeEEEEE-EEh---hh--
Confidence 56888999999974 2455565543 224799999999999999999998 221 00
Q ss_pred ccCCCccccChHHHHhhhcCCCceEEeccCCCCCCccceeeeeecceeeccceEEEecc
Q 006430 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDT 375 (645)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~ 375 (645)
|=...+-.|.+.|+.+||+|.+ .++ .+.-|-|+++|=-
T Consensus 410 -----FDEE~NI~WAk~LE~AGvhVvy--G~~--------------glKtHAKm~lVvR 447 (696)
T COG0855 410 -----FDEEANIHWAKRLERAGVHVVY--GVV--------------GLKTHAKMLLVVR 447 (696)
T ss_pred -----cChhhhhHHHHHHHhCCcEEEe--ccc--------------ceeeeeeEEEEEE
Confidence 1112245688889999999984 111 2356999999843
No 164
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=96.01 E-value=0.012 Score=53.32 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 006430 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (645)
Q Consensus 566 yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~p 631 (645)
++++|.+|+++|+|.++||... .|+++|..+.++|++ |+|++-...
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~~gv~--v~ii~~~~~ 46 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAKRGVK--VRIIVDSNQ 46 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHHTT-E--EEEEEECGG
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHHCCCe--EEEEECCCc
Confidence 4689999999999999999443 689999999999987 777777643
No 165
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.94 E-value=0.031 Score=64.78 Aligned_cols=100 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred EEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECC---
Q 006430 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (645)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~--- 90 (645)
.+.+++.|+|+++.-|..++ ...||+|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 56778999999999886543 45799998733
Q ss_pred ---eeeeeeccccC-CCCCeeeeE-EEEe--ecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEccCCC
Q 006430 91 ---ATVARTRVLKN-SQEPVWNEH-FNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (645)
Q Consensus 91 ---~~~~kT~v~~~-t~~P~w~e~-f~~~--~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~ 163 (645)
.+..||+++.+ +.||+|+|+ |.|. +.+....|.|.|++++ .++||+-.+|+..+..|. +...|-+..
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCC
Confidence 34568888766 999999976 8887 6666788999999975 479999999999998774 334454444
Q ss_pred CC
Q 006430 164 GS 165 (645)
Q Consensus 164 ~~ 165 (645)
++
T Consensus 808 Nq 809 (1189)
T KOG1265|consen 808 NQ 809 (1189)
T ss_pred CC
Confidence 44
No 166
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.69 E-value=0.13 Score=55.12 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=79.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecC--------CCCeEEEEEEEcCCC-C-CeeeeeEeeccccc--
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH--------PLSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI-- 147 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~--------~~~~l~i~v~d~~~~-~-~~~iG~~~i~l~~l-- 147 (645)
..-.+...+++.. ..|..+..+..|.||-+..+.+.. ....|++++|..+.. + .+.||.+.++|...
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 3457888888866 578888889999999999998665 356799999998833 3 79999999999988
Q ss_pred -cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCC
Q 006430 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (645)
Q Consensus 148 -~~~--~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~ 184 (645)
..+ .....||+|++.+++-.+..-+|+|.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 544 4567899999885544445578888888766543
No 167
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.20 E-value=0.084 Score=53.79 Aligned_cols=50 Identities=30% Similarity=0.273 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEec
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~~D 307 (645)
+...+.+.+.|++|+++|+|..|. . . -..|.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~-------~--------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--E-------F--------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--G-------G--------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--H-------H--------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 467899999999999999999882 1 0 258999999999999999999855
No 168
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.19 E-value=0.036 Score=61.88 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=60.5
Q ss_pred CCcEEEEEEC--C---eeeeeeccccCCCCCeeeeEEEEeecC-----CCCeEEEEEEEcCCCC-CeeeeeEeecccccc
Q 006430 80 SDPYVTVVVP--Q---ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (645)
Q Consensus 80 ~dpyv~v~l~--~---~~~~kT~v~~~t~~P~w~e~f~~~~~~-----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (645)
+|||..+.-- . ...++|.+++++++|.|-+ |.+++.. ....+.+.++|.+..+ +++||++..++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 8999988742 2 5567999999999999974 5555433 3567899999999988 699999999998886
Q ss_pred CCceeEEEEEccCCCC
Q 006430 149 TGELISRWYDIIAPSG 164 (645)
Q Consensus 149 ~~~~~~~w~~l~~~~~ 164 (645)
. .....-+++..+.+
T Consensus 236 ~-~~~~~~~~~~~~~~ 250 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKK 250 (529)
T ss_pred c-cCCcccccccChhh
Confidence 4 22222344444443
No 169
>PF13918 PLDc_3: PLD-like domain
Probab=94.23 E-value=0.44 Score=46.33 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHH-HcCCCcEEEEEecCCCCCCCCc
Q 006430 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMWPEGDPKT 637 (645)
Q Consensus 563 ~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~-~~g~~~~V~IvlP~~p~~~~~~ 637 (645)
.+|.++.|.+|++||||+===++|.... .-.+.-=+.|-+||.+|+ .|||+ |++++-.+...+|..
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~-------~~~~~YWP~ID~ALR~AA~~R~V~--VRlLIS~W~ht~p~~ 150 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRY-------SKPNRYWPVIDDALRRAAIERGVK--VRLLISCWKHTDPSM 150 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeec-------CCCCCcchhHHHHHHHHHHHcCCe--EEEEEeecCCCChhH
Confidence 3699999999999999986555553211 111222235667776665 78986 889999988777764
No 170
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.22 E-value=1.5 Score=40.68 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=66.0
Q ss_pred CcEEEEEECCee--eeeeccccC-CCCCeeeeEEEEeecC---------CCCeEEEEEEEcCCCCC-eeeeeEeeccccc
Q 006430 81 DPYVTVVVPQAT--VARTRVLKN-SQEPVWNEHFNIPLAH---------PLSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (645)
Q Consensus 81 dpyv~v~l~~~~--~~kT~v~~~-t~~P~w~e~f~~~~~~---------~~~~l~i~v~d~~~~~~-~~iG~~~i~l~~l 147 (645)
..||+...+... ...|..... ...-.|||+|.+.+.- ....+.|.|+....-+. ..+|.+.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555555432 234443332 4556899999887432 12347888888754443 5999999999999
Q ss_pred cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCCC
Q 006430 148 ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (645)
Q Consensus 148 ~~~--~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~~ 186 (645)
... .....-++|... .+....|+++|.+.+....+
T Consensus 105 ~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 105 ANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDP 141 (143)
T ss_pred hCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCC
Confidence 863 455666777332 24558899999988865543
No 171
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.63 E-value=0.46 Score=55.99 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred ccceEEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 006430 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (645)
Q Consensus 366 ~HqK~vVID~~~~~~~~~~vafvGG~ni~~~r~d~ 400 (645)
=|-|++|||++ .+.+|+.||.+.-.++
T Consensus 702 VHsK~mIvDD~--------~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 702 VHSKLMIVDDE--------YVIIGSANINQRSMLG 728 (887)
T ss_pred EeeeeEEecCC--------EEEEeecccchhhccC
Confidence 39999999999 9999999999966665
No 172
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.47 E-value=1.9 Score=41.37 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC-----CeeeeeEeeccc
Q 006430 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (645)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~-----~~~iG~~~i~l~ 145 (645)
+|-||++.+ ++.. ...|+-+. ..++.|||..+|++.- ..+.|.|+||+....+ ...+|.+.++|.
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 567888765 3321 11343333 3679999998887553 2567899999865321 256888888877
Q ss_pred ccc
Q 006430 146 TIA 148 (645)
Q Consensus 146 ~l~ 148 (645)
+..
T Consensus 105 d~~ 107 (158)
T cd08398 105 DYT 107 (158)
T ss_pred CCC
Confidence 643
No 173
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.28 E-value=0.85 Score=43.47 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred CcEEEEE--ECCeeeeeeccccCCCCCeeeeEEEEeecCCC--------------CeEEEEEEEcCCCC-CeeeeeEeec
Q 006430 81 DPYVTVV--VPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIP 143 (645)
Q Consensus 81 dpyv~v~--l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~--------------~~l~i~v~d~~~~~-~~~iG~~~i~ 143 (645)
+.-.++. +.+++ ++|+.+..+.+|.|+|.|-|.+.... ..|.+.|-..+..+ ..++|+..+.
T Consensus 33 ~s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ld 111 (156)
T PF15627_consen 33 CSTFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLD 111 (156)
T ss_pred ceEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceeh
Confidence 3444444 45555 89999999999999999999988652 34677777767665 6899999888
Q ss_pred cccccCCceeEEEE--EccCCCCCCCCCCceEEEEEEEEeCC
Q 006430 144 AHTIATGELISRWY--DIIAPSGSPPKPGASIQLELKFTPCD 183 (645)
Q Consensus 144 l~~l~~~~~~~~w~--~l~~~~~~~~~~~g~l~l~l~f~p~~ 183 (645)
-..+........++ .|.+......-+.|-|.+++...|..
T Consensus 112 WR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 112 WRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 77766433322233 33333322223569999999988854
No 174
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.73 E-value=0.8 Score=44.30 Aligned_cols=83 Identities=13% Similarity=0.269 Sum_probs=65.7
Q ss_pred ccccccccccCCcCCCcEEEEEECCeeeeeeccccCCCC--CeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeec
Q 006430 66 RHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQE--PVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIP 143 (645)
Q Consensus 66 ~~~~~~~~~~~~~~~dpyv~v~l~~~~~~kT~v~~~t~~--P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~ 143 (645)
++..+..|+.......-|+++.++++.+.+|+...-+.+ =.|||.|.+.+...-+.|.++||......+..|+++.+|
T Consensus 23 ~p~~E~~RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vp 102 (168)
T PF15625_consen 23 CPRAEQNRRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVP 102 (168)
T ss_pred CChhHhhhHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEee
Confidence 344455555666668899999999988888887665332 357899999998888899999999988779999999999
Q ss_pred ccccc
Q 006430 144 AHTIA 148 (645)
Q Consensus 144 l~~l~ 148 (645)
+-...
T Consensus 103 vP~~~ 107 (168)
T PF15625_consen 103 VPGST 107 (168)
T ss_pred CCCCc
Confidence 76544
No 175
>PLN02270 phospholipase D alpha
Probab=91.61 E-value=1.4 Score=52.23 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecC-CCCCCCCC----CCcHHHHHHHHhh--cCCEEEEEE
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~-~~~~~~g~----~~~l~~~L~~~a~--rGV~VriL~ 305 (645)
..+..+++.||++|+++|||+.=-|...-+-+..+ -.+...|. +..|...|.+|.+ ++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 46889999999999999999743332221111100 00000111 1345555555544 588999986
No 176
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.32 E-value=0.59 Score=48.76 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCceeEEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEE
Q 006430 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (645)
Q Consensus 8 ~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~ 87 (645)
+-+++.-+.|.|.+.++.+++|.-..... | -+.+-||.++
T Consensus 42 d~l~~~s~tGiL~~H~~~GRGLr~~p~~k---------------------------g-------------lt~~~ycVle 81 (442)
T KOG1452|consen 42 DHLRLVSSTGILYFHAYNGRGLRMTPQQK---------------------------G-------------LTVCFYCVLE 81 (442)
T ss_pred ceeeeecccceEEEEEecccccccChhcc---------------------------C-------------ceeeeeeeee
Confidence 44556778899999999999996422111 1 1278899999
Q ss_pred ECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccCCceeEEEEEccCCCCCC
Q 006430 88 VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (645)
Q Consensus 88 l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~~~ 166 (645)
.+.+...||.|.....--.|.|+|...+-+ .+.+.+-|+.++... +++.-...+.+..+.. +...+-+.|.
T Consensus 82 ~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~------ 153 (442)
T KOG1452|consen 82 PDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALY------ 153 (442)
T ss_pred ecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhh-cCCcceeeee------
Confidence 998887888887777677899999998764 346678888887664 6554444444444432 1222333331
Q ss_pred CCCCceEEEEEEEEe
Q 006430 167 PKPGASIQLELKFTP 181 (645)
Q Consensus 167 ~~~~g~l~l~l~f~p 181 (645)
..++|++.+++.+..
T Consensus 154 lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 154 LEPRGQPPLRLPLAD 168 (442)
T ss_pred cccCCCCceecccCC
Confidence 134577777777643
No 177
>PLN03008 Phospholipase D delta
Probab=91.27 E-value=0.27 Score=58.03 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCC----CCcHHHHHHHHhh--cCCEEEEEE
Q 006430 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (645)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~----~~~l~~~L~~~a~--rGV~VriL~ 305 (645)
+..+.+++|++|++.|||+.=-|....+.+.... ..|. +..|...|.+|.+ ++-+|+|++
T Consensus 568 Iq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~---~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 568 IQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYR---DAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred HHHHHHHHHHhhccEEEEehhhhhcccccccccc---ccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4788999999999999997433332222111000 0111 2345555555544 588888886
No 178
>PLN02866 phospholipase D
Probab=91.22 E-value=0.42 Score=57.60 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEE
Q 006430 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVI 626 (645)
Q Consensus 560 ~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~Iv 626 (645)
.....+++.+|.+||++|||+.=.|-|..+.+ .+..-.++..|.+.|.+|+++||+ |+||
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~-----Rp~~D~~g~RL~~lL~rKAkrGVk--VrVL 402 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLR-----RPFHDHESSRLDSLLEAKAKQGVQ--IYIL 402 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEE-----ecCCCchHHHHHHHHHHHHHCCCE--EEEE
Confidence 56889999999999999999664444332221 010113567899999999999987 6665
No 179
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=90.41 E-value=1.3 Score=43.00 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcC
Q 006430 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDD 130 (645)
Q Consensus 80 ~dpyv~v~l--~~~---~~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~ 130 (645)
.+-||++.+ ++. ....|+.+.-+..+.|||.++|++.- ..+.|.|.||+..
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 566777755 442 22355555556779999999987543 2566899999854
No 180
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.02 E-value=2.3 Score=40.36 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC---CeeeeeEeeccccc
Q 006430 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (645)
Q Consensus 80 ~dpyv~v~l--~~~---~~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l 147 (645)
.+-||++.+ ++. ....|+....+.++.|||..+|++.- ..+.|.|+||+....+ +..||.+.++|.+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 566777765 332 22344444444789999999888543 2567899999876443 57999999998865
Q ss_pred c
Q 006430 148 A 148 (645)
Q Consensus 148 ~ 148 (645)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 4
No 181
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.25 E-value=3.4 Score=35.76 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=60.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccccCCceeEEEEEc
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 159 (645)
++..+.+.+++..+..|.-... .+..|+++|+|.+.. ..+|+|.|+-.|- ....|...+.|++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 6778889999977788876654 577899999999985 5589999987654 34666677777773321 22333
Q ss_pred cCCCCCCCCCCceEEEEEEE
Q 006430 160 IAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 160 ~~~~~~~~~~~g~l~l~l~f 179 (645)
.+.|.+..++.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 345888888887
No 182
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=87.53 E-value=0.55 Score=50.52 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhc--CCEEEEEEecCC-CccCccCc
Q 006430 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLGV 317 (645)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~r--GV~VriL~~D~~-gs~~~~~~ 317 (645)
.++|+.+...|.+|++.|+|+.- ||-+ . ...+.+.|..+.+. -.+|.||+ |.. |....+.-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasL------YlG~--~-------E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASL------YLGK--L-------ERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeee------ccch--h-------HHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 57999999999999999999854 3322 1 26788888887764 88999997 886 33222111
Q ss_pred cCCCccccChHHHHhhhcCCCceEEec--cCCCCCCccceeeeeecceeeccceEEEeccCCCCCCcceEEEEccccCCC
Q 006430 318 KTPGVMATHDEETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (645)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~r~HqK~vVID~~~~~~~~~~vafvGG~ni~~ 395 (645)
.+. . ..-+..+-....|.+.+. |.+........-........-.|.|+.-+|++ ..+.|.|+++
T Consensus 102 ~s~----l-lp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~ 167 (469)
T KOG3964|consen 102 CSA----L-LPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSN 167 (469)
T ss_pred chh----h-chHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchh
Confidence 100 0 011111111233444421 11111000000000111234689999999996 5788999999
Q ss_pred CCCCC
Q 006430 396 GRYDT 400 (645)
Q Consensus 396 ~r~d~ 400 (645)
+|+-+
T Consensus 168 dyfTN 172 (469)
T KOG3964|consen 168 DYFTN 172 (469)
T ss_pred hhhcc
Confidence 66544
No 183
>PLN02352 phospholipase D epsilon
Probab=85.91 E-value=1.8 Score=50.93 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEE
Q 006430 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVI 626 (645)
Q Consensus 559 e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~Iv 626 (645)
-.....++..||.+|||+|||+.=-|-++-..-.+ .........+..|.+.|.+++++||+ |+|+
T Consensus 185 ~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~-~~~~~p~~~g~~LgdLLk~KA~eGV~--VrLL 249 (758)
T PLN02352 185 PRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRD-PETDIPHARGVKLGELLKRKAEEGVA--VRVM 249 (758)
T ss_pred HHHHHHHHHHHHHhhccEEEEEEEEecCCceeccC-cccccccccchHHHHHHHHHHHCCCE--EEEE
Confidence 36688999999999999999998666554110000 00000112457899999999999987 6666
No 184
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=85.50 E-value=2.8 Score=40.19 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=49.8
Q ss_pred CCCcEEEEEE--CCe---eeeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC-CeeeeeEeeccccc
Q 006430 79 TSDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (645)
Q Consensus 79 ~~dpyv~v~l--~~~---~~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l 147 (645)
.+|-||++.+ ++. ....|+.+.-+..+.|||..+|++.- ..+.|.|+||+....+ ...+|.+.++|.+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4788999876 332 12255555556778999998888653 2567899999987654 67899999988764
No 185
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=85.10 E-value=1.8 Score=44.08 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecC
Q 006430 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (645)
Q Consensus 559 e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~ 629 (645)
..+|.+-...+|++|++.|||..+.=. .+.+...|.+|.+||+. |.|++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~~rGV~--V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAVDRGVK--VKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHHHTT-E--EEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHHHCCCE--EEEEEeC
Confidence 578999999999999999999985321 25799999999999986 7788877
No 186
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.60 E-value=7.2 Score=38.48 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=39.6
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC---CeeeeeEeecc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA 144 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~---~~~iG~~~i~l 144 (645)
...++|.|.....+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4457899999999999999999999874 456888777643322 24566666665
No 187
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=82.50 E-value=7.8 Score=37.48 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=42.8
Q ss_pred CCcEEEEEE--CCee---eeeecccc--C--CCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC----------Cee
Q 006430 80 SDPYVTVVV--PQAT---VARTRVLK--N--SQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG----------AQI 136 (645)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~--~--t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~----------~~~ 136 (645)
.|-|+++.+ ++.. ...|+... + ...+.|||..+|++.- -++.|.|.+|+..... +..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 677888865 3321 12333221 1 3357799998888542 2566899999865432 467
Q ss_pred eeeEeecccccc
Q 006430 137 IGTAAIPAHTIA 148 (645)
Q Consensus 137 iG~~~i~l~~l~ 148 (645)
||.+.++|.+..
T Consensus 109 lG~~~~~LFd~~ 120 (171)
T cd04012 109 LGWVSLPLFDFR 120 (171)
T ss_pred EEEEeEeeEcch
Confidence 888888776543
No 188
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.41 E-value=11 Score=35.11 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=46.4
Q ss_pred CcEEEEEE--CC---e-eeeeeccccCC-CCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC-C----eeeeeEeecc
Q 006430 81 DPYVTVVV--PQ---A-TVARTRVLKNS-QEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (645)
Q Consensus 81 dpyv~v~l--~~---~-~~~kT~v~~~t-~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~-~----~~iG~~~i~l 144 (645)
+.||.+.+ ++ . ....|+...-+ ..+.|||..+|++.- ..+.|.|+||..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34666655 44 2 33366666666 899999998888542 3567899999877665 3 6999999998
Q ss_pred cccc
Q 006430 145 HTIA 148 (645)
Q Consensus 145 ~~l~ 148 (645)
.+..
T Consensus 83 Fd~~ 86 (142)
T PF00792_consen 83 FDYR 86 (142)
T ss_dssp B-TT
T ss_pred ECCC
Confidence 8764
No 189
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.57 E-value=3.7 Score=40.14 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=32.8
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC----CeeeeeEeecccc
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~----~~~iG~~~i~l~~ 146 (645)
..+.|.|..++.+|.|+|+|.++++.. ...|.|++++...-. +..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 446888898999999999999999875 345888998865432 1577777777765
No 190
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=78.78 E-value=17 Score=32.57 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=50.4
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCC--------CCeEEEEEEEcCCCCCeeeeeEeeccccccC--Cce
Q 006430 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (645)
Q Consensus 83 yv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~--------~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~--~~~ 152 (645)
||.+.+-.-..+.|.++. ..+|.+|-+-.+.|... ...+.++++..-......+|.+.+++..+.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 556655443336777777 78999998877777653 4568899988664346899999999999873 334
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 006430 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (645)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~l~l~l~f 179 (645)
..+-..|.+.+++ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 5566667666665 45888877764
No 191
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=77.11 E-value=20 Score=35.09 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=51.9
Q ss_pred cEEEEEE--CCee--eeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcCCCC--CeeeeeEeeccccccCCc
Q 006430 82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGE 151 (645)
Q Consensus 82 pyv~v~l--~~~~--~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~~~~--~~~iG~~~i~l~~l~~~~ 151 (645)
-||++.+ ++.. ..+|....-+.++.|||...|++.- ..+.|.|+||+..... ....|.. +.+.-....
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH 109 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence 5666644 3311 1245555557789999998887553 2567899999863321 1222211 111111112
Q ss_pred eeEEEEE--ccCCCCCCCCCCceEEEEEEEEeCCCC
Q 006430 152 LISRWYD--IIAPSGSPPKPGASIQLELKFTPCDKN 185 (645)
Q Consensus 152 ~~~~w~~--l~~~~~~~~~~~g~l~l~l~f~p~~~~ 185 (645)
..-+|.. |++.++. =..|+..|.+.-.|...+
T Consensus 110 ~~l~wvn~~LFD~~~~--Lr~G~~~L~~W~~~~~~~ 143 (178)
T cd08399 110 QLLYYVNLLLIDHRFL--LRTGEYVLHMWQISGKGE 143 (178)
T ss_pred ceEEEEEEEEEcCCCc--eecCCEEEEEecCCCccc
Confidence 2233433 3343332 234888888887665444
No 192
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=75.31 E-value=5.8 Score=41.51 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHH-HcCCCcEEEEEecCC
Q 006430 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKI-RANERFAVYVIIPMW 630 (645)
Q Consensus 560 ~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~-~~g~~~~V~IvlP~~ 630 (645)
.+|.+....+|++|++-|=|..-=|.-. +|..-|..|+ +|+|. |||+|-..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa~kR~Vp--VYiLLD~~ 184 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAANKRGVP--VYILLDEQ 184 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHHHhcCCc--EEEEechh
Confidence 4699999999999999999999888753 7888899999 99997 99998654
No 193
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.56 E-value=8.8 Score=38.01 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=41.1
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC-----CeeeeeEeeccc
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~-----~~~iG~~~i~l~ 145 (645)
...++|.|.....+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4557999999999999999999998874 566888887754321 246676666663
No 194
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.68 E-value=3 Score=48.15 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=66.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCCCC-CeeeeeEeeccccccC-CceeEEEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~-~~~~~~w~ 157 (645)
.++|+.|.+.-.....+.+.+.+..|.|+|+|.+.+.. ...+.|.|+...... +.+...+.+-.+++.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 79999999877555566678889999999999999654 456788888876554 5555555555555442 22345687
Q ss_pred EccCCCCCCCCCCceEEEEEEEEeCCC
Q 006430 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (645)
Q Consensus 158 ~l~~~~~~~~~~~g~l~l~l~f~p~~~ 184 (645)
.+ . +.|++...+.+.....
T Consensus 107 ~~-~-------~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI-E-------ELGTLLKPAALTGTLE 125 (694)
T ss_pred cc-c-------cccceeeeecccCcCC
Confidence 75 3 3377777777666443
No 195
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=63.54 E-value=12 Score=40.73 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 006430 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (645)
Q Consensus 561 sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~ 630 (645)
..++.+...|.+||++|+|.+=|.--. ..++++.|..|+.+...++|-|++-..
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 477899999999999999999998654 369999999999999999999998643
No 196
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=59.73 E-value=21 Score=34.92 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=32.5
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~ 131 (645)
+.+.|.|...+.+|.|+|++.++++.. ...|.|+.++.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 457899999999999999999999875 3458888887543
No 197
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=58.21 E-value=23 Score=34.46 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=34.9
Q ss_pred eeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcCCCC------CeeeeeEeecccc
Q 006430 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG------AQIIGTAAIPAHT 146 (645)
Q Consensus 94 ~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~~~~------~~~iG~~~i~l~~ 146 (645)
++|-+..+ .+|.|+|+|.+.++.. ...|.|++++...-. ...+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999999754 455888888855322 3566666666553
No 198
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=56.69 E-value=37 Score=40.60 Aligned_cols=100 Identities=17% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcC----------CCC-CeeeeeEeecc
Q 006430 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD----------VFG-AQIIGTAAIPA 144 (645)
Q Consensus 80 ~dpyv~v~l~~----~~~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~----------~~~-~~~iG~~~i~l 144 (645)
...||...++. ....+|+++.+|..|.||++|.+++-... ...+...+.+ ... +...|...+.+
T Consensus 775 ~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sq-S~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l 853 (1112)
T KOG4269|consen 775 RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQ-SSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKL 853 (1112)
T ss_pred cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhcc-ccchhhhcccchHHHhhhccchhhccccccccccc
Confidence 45688877643 45579999999999999999999876532 2334443332 112 34555555544
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCCCc
Q 006430 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (645)
Q Consensus 145 ~~l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~~~ 187 (645)
..... ....|+.-... ..+-.+...+.|.+......
T Consensus 854 ~~~~~--~d~d~~t~v~~-----~n~~~ve~~v~~ssss~Ss~ 889 (1112)
T KOG4269|consen 854 DPQPH--HDADWYTQVID-----MNGIVVETSVKFSSSSTSSK 889 (1112)
T ss_pred Ccccc--ccccCccChhh-----hcCcceeeeEEecccccccc
Confidence 43221 12346543222 12355677788877655443
No 199
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=56.42 E-value=53 Score=32.33 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=32.9
Q ss_pred eeeeeeccccCCCCCeeeeEEEEeecCC---CCeEEEEEEEcC
Q 006430 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (645)
Q Consensus 91 ~~~~kT~v~~~t~~P~w~e~f~~~~~~~---~~~l~i~v~d~~ 130 (645)
.+.+.|.|..++.+|.|+|++.+.++.. ...|.|+.++..
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 4557899999999999999999998875 445888888865
No 200
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=54.57 E-value=76 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeEEEEeecC----CCCeEEEEEEEcC
Q 006430 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDD 130 (645)
Q Consensus 80 ~dpyv~v~l--~~~~---~~kT~v~~~t~~P~w~e~f~~~~~~----~~~~l~i~v~d~~ 130 (645)
++-||++.+ ++.. ...|+.+.-...+.|||..+|++.- ....|.|.+|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 467888865 3321 1245444445668999998887543 2456889998753
No 201
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=52.68 E-value=18 Score=39.99 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=36.7
Q ss_pred eeeeEeecccc-ccCCceeEEEEEccCCCCCCCCCCceEEEEEEEEeCCCCC
Q 006430 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (645)
Q Consensus 136 ~iG~~~i~l~~-l~~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~p~~~~~ 186 (645)
.+|.+.||++. +..+...+.||++++...+.. ..|.+ |+++|......|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeeceecc
Confidence 48999999999 667788899999987655433 34666 788887754444
No 202
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=44.83 E-value=27 Score=39.72 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=47.5
Q ss_pred eeeeeccccCCCCCeeeeEEEEeecCCC-CeEEEEEEEcCCC----C-CeeeeeEeeccccccCC
Q 006430 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIATG 150 (645)
Q Consensus 92 ~~~kT~v~~~t~~P~w~e~f~~~~~~~~-~~l~i~v~d~~~~----~-~~~iG~~~i~l~~l~~~ 150 (645)
...+|.++.+.+||.|-+.|.++...+. +.+++++++.+.. . .+|+|++...+.++...
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 4469999999999999999988866554 4579999987654 2 68999999999888743
No 203
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=33.67 E-value=3e+02 Score=29.73 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=61.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eeeeEEEEeecCCCCeEEEEEEEcCCCCCeeeeeEeeccccc--cCCceeEE
Q 006430 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTI--ATGELISR 155 (645)
Q Consensus 80 ~dpyv~v~l~~~~~~kT~v~~~t~~P--~w~e~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l--~~~~~~~~ 155 (645)
...|+.+..+... .+|..+.-+..- .-++...+.+..-...|++.|+.....+...||.+.+.+..= ...-...+
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 4568888877754 345333222221 334566666776677899999999888889999999987542 23334568
Q ss_pred EEEccCCCCCCCCCCceEEEEEE
Q 006430 156 WYDIIAPSGSPPKPGASIQLELK 178 (645)
Q Consensus 156 w~~l~~~~~~~~~~~g~l~l~l~ 178 (645)
||.+ ...|+. .++|.|++-
T Consensus 153 Wy~c-~kDGq~---~cRIqLSFh 171 (508)
T PTZ00447 153 WFVC-FKDGQE---ICKVQMSFY 171 (508)
T ss_pred eEEE-ecCCce---eeeEEEEeh
Confidence 9999 455552 366666664
No 204
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=29.00 E-value=1.9e+02 Score=29.62 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHhccc--eEEEEEEEeecCcceeecCCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 006430 245 EDICHAISEAHH--LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (645)
Q Consensus 245 ~~l~~aI~~Ak~--~I~i~~w~~~~~~~L~r~~~~~~~~g~~~~l~~~L~~~a~rGV~VriL~ 305 (645)
..|.+.++.|++ .-.+.+-++-+++.-.++..+ .+..+.++|.+|+++||+|...-
T Consensus 155 KHLreL~~~~~~G~ra~vlf~v~r~d~~~F~P~~e-----~Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 155 KHLRELERLAKEGYRAVVLFLVLRSDITRFSPNRE-----IDPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred HHHHHHHHHHHcCCceEEEEEEecCCCcEECcccc-----cCHHHHHHHHHHHHcCCEEEEEE
Confidence 344444444432 333344444444443433321 24789999999999999987764
No 205
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=24.67 E-value=2.2e+02 Score=29.18 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.3
Q ss_pred CCcHHHHHHHHhhcCCEEEEEE
Q 006430 284 DLTLGELLKYKSEEGVRVLLLV 305 (645)
Q Consensus 284 ~~~l~~~L~~~a~rGV~VriL~ 305 (645)
...+.++|.+|.+.||+|.-+.
T Consensus 192 Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 192 DEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred CHHHHHHHHHHHHCCCEEEEEE
Confidence 4689999999999999987764
No 206
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=23.69 E-value=1.9e+02 Score=25.76 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=38.7
Q ss_pred CeEEEEEEEcCC---CC-CeeeeeEeecccccc--------------CCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 006430 120 SNLEIQVKDDDV---FG-AQIIGTAAIPAHTIA--------------TGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (645)
Q Consensus 120 ~~l~i~v~d~~~---~~-~~~iG~~~i~l~~l~--------------~~~~~~~w~~l~~~~~~~~~~~g~l~l~l~f~ 180 (645)
..|.+.+++-.. .. ..+||++.+++.+.. ......+-|+|.++.+.. .|+|.|.++.+
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~---~G~I~l~iRLs 104 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNP---VGEISLYIRLS 104 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCce---eeeEEEEEEEe
Confidence 446676665432 23 679999999986643 223456789998777663 38888777654
No 207
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=23.44 E-value=4.8e+02 Score=30.41 Aligned_cols=104 Identities=13% Similarity=0.328 Sum_probs=70.6
Q ss_pred EEEceEEEEEEEEeeCCCCCCCCchhhhhcccccccCCCCCCCCccccCCCCcccccccccccCCcCCCcEEEEEECCee
Q 006430 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (645)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~l~~~~ 92 (645)
..+.-.+.|.|.+.++|.+...+. =.||++.+.+.+
T Consensus 337 v~la~smevvvmevqglksvapnr--------------------------------------------ivyctmevegek 372 (1218)
T KOG3543|consen 337 VSLALSMEVVVMEVQGLKSVAPNR--------------------------------------------IVYCTMEVEGEK 372 (1218)
T ss_pred eeEEeeeeEEEeeeccccccCCCe--------------------------------------------eEEEEEEecccc
Confidence 345556889999999998755443 279999998855
Q ss_pred eeeeccccCCCCCeeeeEEEEeecCCCCeEEEEEEEcCC--C--CCeeeeeEeeccccccCCceeEEEEEccCCCC
Q 006430 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV--F--GAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (645)
Q Consensus 93 ~~kT~v~~~t~~P~w~e~f~~~~~~~~~~l~i~v~d~~~--~--~~~~iG~~~i~l~~l~~~~~~~~w~~l~~~~~ 164 (645)
. .|. +....-|.|.-.=.|...++..-+++.++.... + .|+-+|.+.+.- -.......+|+.+.-++.
T Consensus 373 l-qtd-qaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~p--tpns~ks~ewh~mtvpkn 444 (1218)
T KOG3543|consen 373 L-QTD-QAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQP--TPNSAKSPEWHTMTVPKN 444 (1218)
T ss_pred c-ccc-hhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEec--CCCCcCCccceeeecCCC
Confidence 3 333 223557999988888888888778888887643 2 377888877632 222333457888754443
No 208
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=21.67 E-value=2e+02 Score=29.63 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCcccCCCCCCchHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 006430 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (645)
Q Consensus 559 e~sI~~~yl~aI~~Ak~~IYIenqYFi~~~~~~~~~~~~~~~n~i~~~i~~aL~~A~~~g~~~~V~IvlP~~ 630 (645)
...|.+....+|..|++-|+++.++=+ -.++...|..|.+||+. |.+++...
T Consensus 118 ~~~i~~~~~e~i~~a~~ei~~~~~~e~------------------~~~l~~~l~~~~~rgv~--v~i~~~~~ 169 (247)
T COG1378 118 SEEIIEKIKEVINEAEKEIIIVLPYEI------------------FKELKEPLIRALKRGVR--VLILVFPI 169 (247)
T ss_pred HHHHHHHHHHHHHhhhcEEEEEeCHHH------------------HHHhHHHHHHHHHccCe--EEEEeccc
Confidence 467999999999999999999998211 14799999999999987 55665553
No 209
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=20.83 E-value=1.1e+02 Score=33.21 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCcccccc
Q 006430 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQE 642 (645)
Q Consensus 606 ~i~~aL~~A~~~g~~~~V~IvlP~~p~~~~~~~~~~~ 642 (645)
.|+++|++|++.|.+ |.+++=.+.-=+.+.|.-|+
T Consensus 51 ~iv~aLi~AA~nGK~--Vtv~vELkARFDEe~Ni~Wa 85 (352)
T PF13090_consen 51 PIVNALIEAAENGKQ--VTVLVELKARFDEENNIHWA 85 (352)
T ss_dssp HHHHHHHHHHHTT-E--EEEEESTTSSSTTCCCCCCC
T ss_pred HHHHHHHHHHHcCCE--EEEEEEEeccccHHHHhHHH
Confidence 799999999999997 89999888877777766553
No 210
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=20.68 E-value=6.7e+02 Score=27.96 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=39.6
Q ss_pred CeEEEEEEEcC-----CC--CCeeeeeEeecccccc-CCc---eeEEEEEccCCCC-CCCCCCceEEEEEEEEe
Q 006430 120 SNLEIQVKDDD-----VF--GAQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSG-SPPKPGASIQLELKFTP 181 (645)
Q Consensus 120 ~~l~i~v~d~~-----~~--~~~~iG~~~i~l~~l~-~~~---~~~~w~~l~~~~~-~~~~~~g~l~l~l~f~p 181 (645)
..|+|.||.-. .+ ..++||.+.|+|+--. .+. ...+|..|=.... +..+...+|+|.++-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 46899999843 22 3689999999987322 111 2357999932221 12235688999888655
No 211
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=94 Score=32.99 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCcHHHHHHHHhhcCCEEEEEEecCCCccCccCccCCCccccChHHHHhhhcCCCceEE
Q 006430 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCV 342 (645)
Q Consensus 284 ~~~l~~~L~~~a~rGV~VriL~~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 342 (645)
..++.++|+.++.+|.+++++|-++...+. ...+.+.|++.||.+.
T Consensus 129 S~~v~~~l~~A~~~~k~~~V~VtESRP~~e-------------G~~~ak~L~~~gI~~~ 174 (301)
T COG1184 129 SKTVLEVLKTAADRGKRFKVIVTESRPRGE-------------GRIMAKELRQSGIPVT 174 (301)
T ss_pred cHHHHHHHHHhhhcCCceEEEEEcCCCcch-------------HHHHHHHHHHcCCceE
Confidence 589999999999999988888745542211 3567888999999876
Done!