BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006431
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQ 77
LP NR+C +C+ GP YV +FVC +CSG R HRVKS+SM+ FT QE+E LQ
Sbjct: 17 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQ 76
Query: 78 NGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
GN+ ++I+L +D + +PD + KV++F++ Y +R+
Sbjct: 77 KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQ 77
LP NR+C +C+ GP YV +FVC +CSG R HRVKS+SM+ FT QE+E LQ
Sbjct: 22 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQ 81
Query: 78 NGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
GN+ ++I+L +D + +PD + KV++F++ Y +R+
Sbjct: 82 KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 12/105 (11%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEVEALQNG 79
N+ C +C S GP++ N F+C+ C+GIHR RVKSV++ ++T ++++ +Q
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86
Query: 80 GNQRAR---EIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
GN +A E YL + F+R ++ V FI++ Y ++Y
Sbjct: 87 GNGKANRLYEAYLPE-TFRRPQIDP-----AVEGFIRDKYEKKKY 125
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEV 73
L++ N+ C +C + GP++ N F+C+ C+GIHR RVKSV++ ++T++++
Sbjct: 23 LLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQI 82
Query: 74 EALQNGGNQRAREIY 88
+ +Q+ GN +AR +Y
Sbjct: 83 QCMQDMGNTKARLLY 97
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77
P N +C +C + P ++ TN C+ CSG+HRE R++S+++ E+
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 78 NGGNQRAREIYLKDWDFQRQRLPDN--------SNVNKVRDFIKNVYVDRRYAGGKTPD 128
N GN E+ +LP + S++ RD+I YV+ R+A TP+
Sbjct: 100 NMGNTSFNEV-------MEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPE 151
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77
P N +C +C + P ++ TN C+ CSG+HRE R++S+++ E+
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 78 NGGNQRAREIYLKDWDFQRQRLPDN--------SNVNKVRDFIKNVYVDRRYAGGKTPD 128
N GN E+ +LP + S++ RD+I YV+ R+A TP+
Sbjct: 81 NMGNTSFNEV-------MEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPE 132
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-THR--VKSVSMSKFTSQEVEALQNG 79
N C C + PQ+V + ++C+ CSG HR H V+SV+M K+ E+E ++ G
Sbjct: 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAG 96
Query: 80 GNQRAREI 87
GN + RE
Sbjct: 97 GNAKFREF 104
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF--THRVKSVSMSKFTSQEVE 74
L++ P N RC +C + P + F+C++CSGIHR +VKSV + + +VE
Sbjct: 28 LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVE 87
Query: 75 ALQNGGNQRAR 85
+ + GN AR
Sbjct: 88 FMASHGNDAAR 98
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF--THRVKSVSMSKFTSQEVE 74
L++ P N RC +C + P + F+C++CSGIHR +VKSV + + +VE
Sbjct: 30 LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVE 89
Query: 75 ALQNGGNQRAR 85
+ + GN AR
Sbjct: 90 FMASHGNDAAR 100
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-THR--VKSVSMSKFTSQEVEALQNG 79
N C C + PQ+V + ++C+ CSG HR H V+SV+M K+ E+E ++ G
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAG 97
Query: 80 GNQRAREIYLKDWDF 94
GN + RE D+
Sbjct: 98 GNAKFREFLESQEDY 112
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 19 KLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-TH--RVKSVSMSKFTSQEVEA 75
++ N C +C + P ++ TN C+ CSGIHRE H R++S+++ + E+
Sbjct: 13 RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLL 72
Query: 76 LQNGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGKTPDKPPK 132
+N GN EI + P+ S++ +D+I Y++RRYA K D K
Sbjct: 73 AKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAK 130
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEVEALQNG 79
N +C +C P +V N F+C+ CSG+HR V+S+ M FT ++++ + G
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 80 GNQRAREIYLKDW---DFQRQRLPDNSNVNKVRDFIKNV 115
GN++ + YL+++ DF +R + R ++++
Sbjct: 82 GNKKC-QTYLENYGISDFIPERKYRTKAADHYRKILRSI 119
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEVEALQ 77
P NR C +C S P ++ +F F+C+ CS HR+ V+S + KFT ++ +
Sbjct: 34 PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMD 93
Query: 78 NGGNQRAREIY 88
GGN RAR +
Sbjct: 94 IGGNGRARNYF 104
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-TH--RVKSVSMSKFTSQEVEALQNG 79
N +C +C P++ N +C+ CSGIHR H +V+S+++ + + V+ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRD-FIKNVYVDRRY 121
GN +IY + + P S + ++ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-TH--RVKSVSMSKFTSQEVEALQNG 79
N +C +C P++ N +C+ CSGIHR H +V+S+++ + + V+ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRD-FIKNVYVDRRY 121
GN +IY + + P S + ++ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 23 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF-TH--RVKSVSMSKFTSQEVEALQNG 79
N +C +C P++ N +C+ CSGIHR H +V+S+++ + + V+ +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRD-FIKNVYVDRRY 121
GN +IY + + P S + ++ +I YV++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKF 147
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQ----E 72
L +P N+ C +C + P + + F+C+ CSG+HR + + ++ S +
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQ 90
Query: 73 VEALQNGGNQRAREIY 88
+ +Q GGN A +
Sbjct: 91 LRCMQVGGNANATAFF 106
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQ----E 72
L +P N+ C +C + P + + F+C+ CSG HR + + ++ S +
Sbjct: 23 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQ 82
Query: 73 VEALQNGGNQRAREIY 88
+ +Q GGN A +
Sbjct: 83 LRCMQVGGNASASSFF 98
>pdb|2FWS|A Chain A, First Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1)
Length = 139
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 192 SLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPN----------FQK 241
+++ G ++ +F D +G+ + SDY + G F+PG F++
Sbjct: 23 TIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEE 82
Query: 242 DAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLT 301
D F V L S++K + + DGI ++L +GS + +V++ + G+
Sbjct: 83 DENF---LVHL----SNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHAGIF 135
Query: 302 DVSE 305
E
Sbjct: 136 TFEE 139
>pdb|2DPK|A Chain A, The Crystal Structure Of The Primary Ca2+ Sensor Of The
Na+CA2+ EXCHANGER
Length = 152
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 192 SLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPN----------FQK 241
+++ G ++ +F D +G+ + SDY + G F+PG F++
Sbjct: 36 TIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEE 95
Query: 242 DAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLT 301
D F V L S++K + + DGI ++L +GS + +V++ + G+
Sbjct: 96 DENF---LVHL----SNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHAGIF 148
Query: 302 DVSE 305
E
Sbjct: 149 TFEE 152
>pdb|3GIN|A Chain A, Crystal Structure Of E454k-Cbd1
pdb|3GIN|B Chain B, Crystal Structure Of E454k-Cbd1
Length = 160
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 192 SLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPN----------FQK 241
+++ G ++ +F D +G+ + SDY + G F+PG F++
Sbjct: 44 TIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEE 103
Query: 242 DAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLT 301
D F V L S++K + + DGI ++L +GS + +V++ + G+
Sbjct: 104 DKNF---LVHL----SNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHAGIF 156
Query: 302 DVSE 305
E
Sbjct: 157 TFEE 160
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium
Binding Domains(Cbd12)
Length = 295
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 192 SLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPN----------FQK 241
+++ G ++ +F D +G+ + SDY + G F+PG F++
Sbjct: 31 TIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEE 90
Query: 242 DAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
D F V L S++K + + DGI ++L +GS + +V++ + G+
Sbjct: 91 DKNF---LVHL----SNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHAGI 142
>pdb|2A6Z|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Monoclinic Crystal Form 1
pdb|2A70|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Monoclinic Crystal Form 2
pdb|2A70|B Chain B, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Monoclinic Crystal Form 2
pdb|2A71|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Orthorhombic Crystal Form
pdb|2A71|B Chain B, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Orthorhombic Crystal Form
pdb|2A71|C Chain C, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Orthorhombic Crystal Form
pdb|2A71|D Chain D, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Orthorhombic Crystal Form
Length = 222
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 291 SLKSCNSGGLTD--VSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFE------APVVP 342
+ +S G TD +S Q + P DK +GPVNY GL L P +
Sbjct: 68 TFRSVGYSGQTDGGISFWFVQDSNIPRDK----QLYNGPVNYDGLQLLVDNNGPLGPTLR 123
Query: 343 ETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPST 379
+ P+D ++ + S AS M Q SSVPST
Sbjct: 124 GQLNDGQKPVDKTKIYDQSFASCLMG--YQDSSVPST 158
>pdb|3LVT|A Chain A, The Crystal Structure Of A Protein In The Glycosyl
Hydrolase Family 38 From Enterococcus Faecalis To 2.55a
Length = 899
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 29 CNSLGPQY--VCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRARE 86
N L P+Y + +NF ++ + E + +V+ + TSQE + N +
Sbjct: 249 ANELFPEYEFIHSNFDDYL----KAVQEELPEDLGTVT-GELTSQETDGWYTLANTSSAR 303
Query: 87 IYLKDWDFQRQRLPDN 102
+YLK W+ + QR +N
Sbjct: 304 VYLKQWNTKVQRQLEN 319
>pdb|2A6Y|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
Domain (Crd), Tetragonal Crystal Form
Length = 256
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 325 HGPVNYGGLDLFE------APVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPS 378
+GPVNY GL L P + + P+D ++ + S AS M Q SSVPS
Sbjct: 107 NGPVNYDGLQLLVDNNGPLGPTLRGQLNDGQKPVDKTKIYDQSFASCLMG--YQDSSVPS 164
Query: 379 T 379
T
Sbjct: 165 T 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,828,249
Number of Sequences: 62578
Number of extensions: 839575
Number of successful extensions: 1067
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 26
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)