Query 006431
Match_columns 645
No_of_seqs 192 out of 1208
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 00:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 7.1E-39 2.4E-43 298.8 11.4 122 3-124 5-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 2.1E-37 7.2E-42 287.0 7.6 118 4-124 8-128 (134)
3 2crr_A Stromal membrane-associ 100.0 4.1E-37 1.4E-41 287.2 7.9 121 3-126 9-132 (141)
4 3jue_A Arfgap with coiled-coil 100.0 1.3E-33 4.4E-38 294.8 9.0 124 1-124 23-150 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 9.7E-33 3.3E-37 291.4 11.8 121 3-124 14-137 (386)
6 2owa_A Arfgap-like finger doma 100.0 2.3E-31 8E-36 247.7 8.6 112 6-121 19-133 (138)
7 3dwd_A ADP-ribosylation factor 100.0 3.1E-30 1E-34 242.1 8.9 114 6-123 21-145 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.8E-30 6.3E-35 244.4 7.0 92 1-93 8-103 (149)
9 2b0o_E UPLC1; arfgap, structur 99.9 3.2E-28 1.1E-32 244.8 11.6 120 5-124 24-147 (301)
10 2p57_A GTPase-activating prote 99.9 2.3E-28 7.7E-33 229.0 8.3 86 7-92 21-110 (144)
11 3lvq_E ARF-GAP with SH3 domain 99.9 3E-28 1E-32 259.4 8.5 122 4-125 4-129 (497)
12 3sub_A ADP-ribosylation factor 99.9 3.6E-28 1.2E-32 231.2 6.8 87 6-92 4-94 (163)
13 1dcq_A PYK2-associated protein 99.9 9.5E-28 3.3E-32 238.4 9.5 118 8-125 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 7.5E-26 2.6E-30 231.9 8.9 88 6-93 20-110 (329)
15 1u5k_A Hypothetical protein; O 81.8 1.5 5.3E-05 42.9 5.3 48 21-81 148-195 (244)
16 1gnf_A Transcription factor GA 60.1 4.7 0.00016 31.1 2.3 36 22-57 3-39 (46)
17 2vut_I AREA, nitrogen regulato 57.3 5.2 0.00018 30.4 2.1 34 24-57 2-36 (43)
18 3dfx_A Trans-acting T-cell-spe 51.1 6.7 0.00023 32.2 1.9 38 20-57 4-42 (63)
19 4gat_A Nitrogen regulatory pro 49.1 8.6 0.00029 31.8 2.3 37 21-57 7-44 (66)
20 1tjl_A DNAK suppressor protein 48.4 17 0.00058 34.1 4.5 33 21-53 109-142 (151)
21 4hc9_A Trans-acting T-cell-spe 41.0 14 0.00047 33.4 2.5 33 23-55 5-38 (115)
22 1ffk_W Ribosomal protein L37AE 37.8 15 0.0005 31.0 2.0 40 10-51 13-53 (73)
23 1d4u_A Nucleotide excision rep 32.8 7.7 0.00026 35.0 -0.5 31 22-52 4-35 (111)
24 2kae_A GATA-type transcription 30.8 20 0.00069 30.0 1.7 34 22-56 7-43 (71)
25 2kgo_A Uncharacterized protein 30.3 38 0.0013 30.4 3.5 31 23-53 56-87 (108)
26 3g9m_A Glucocorticoid receptor 27.0 25 0.00086 30.1 1.7 31 22-55 1-31 (90)
27 3dzy_D Peroxisome proliferator 26.0 30 0.001 36.8 2.5 32 21-55 48-79 (419)
28 1r4i_A Androgen receptor; AR, 26.0 26 0.00087 31.1 1.6 33 20-55 4-36 (105)
29 2han_B Ecdysone receptor; tran 25.4 31 0.0011 31.1 2.1 31 22-55 7-37 (119)
30 4glq_A Methyl-accepting chemot 24.6 20 0.00068 32.9 0.7 26 67-92 132-157 (171)
31 1hcq_A Protein (estrogen recep 24.1 35 0.0012 29.0 2.0 31 22-55 3-33 (84)
32 2ebl_A COUP transcription fact 24.0 30 0.001 29.8 1.6 32 21-55 5-36 (89)
33 3k7a_M Transcription initiatio 22.9 27 0.00094 36.1 1.4 30 24-53 22-52 (345)
34 2nll_B Protein (thyroid hormon 22.0 37 0.0013 29.9 1.9 29 24-55 2-30 (103)
35 2zet_C Melanophilin; complex, 21.4 26 0.0009 32.9 0.8 34 22-55 67-105 (153)
36 2han_A Protein ultraspiracle; 21.3 38 0.0013 29.4 1.7 31 22-55 9-39 (93)
37 2a66_A Orphan nuclear receptor 20.8 33 0.0011 30.8 1.3 33 20-55 6-38 (113)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=7.1e-39 Score=298.76 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC--CceeeeecCCCCHHHHHHHHhcC
Q 006431 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (645)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSItLDkWt~eEVe~Lq~gG 80 (645)
+|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| |+||||+||+|++++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred hHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 006431 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (645)
Q Consensus 81 N~rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (645)
|.++|++||++++....+.|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 99999999999987666778777788899999999999999865
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=287.03 Aligned_cols=118 Identities=30% Similarity=0.603 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcC
Q 006431 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (645)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gG 80 (645)
+++.|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|++++|++|+.+|
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMG 87 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHc
Confidence 488889999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred hHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 006431 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (645)
Q Consensus 81 N~rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (645)
|.++|++||++++.. .+.|.. .+.+++||++||++|+|+..
T Consensus 88 N~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 88 NGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred hHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 999999999999764 344433 35688999999999999975
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=287.23 Aligned_cols=121 Identities=30% Similarity=0.632 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhc
Q 006431 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (645)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~g 79 (645)
.++++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred ChHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccccCCCC
Q 006431 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKT 126 (645)
Q Consensus 80 GN~rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF~~~k~ 126 (645)
||.++|++||++++.. .+.|.. .+.+++||++||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999765 344433 3567889999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.3e-33 Score=294.78 Aligned_cols=124 Identities=20% Similarity=0.456 Sum_probs=105.1
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHH
Q 006431 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (645)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq 77 (645)
|+.+|++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||.|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 556799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcChHHHHHHHhhcCCcccCCCCC-CCchHHHHHHHHHHHhhccccCC
Q 006431 78 NGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (645)
Q Consensus 78 ~gGN~rANeiwea~~~~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~ 124 (645)
.+||.++|++||++|+....++|. .++.+.+++||++||++|+|+..
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~ 150 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCS
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhccccc
Confidence 999999999999999864333343 34556778899999999999876
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.98 E-value=9.7e-33 Score=291.40 Aligned_cols=121 Identities=24% Similarity=0.461 Sum_probs=110.6
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCC--ceeeeecCCCCHHHHHHHHhcC
Q 006431 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNGG 80 (645)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGh--rVKSItLDkWt~eEVe~Lq~gG 80 (645)
+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+|.| +||||+||+|++++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCcccCCCCCCCc-hHHHHHHHHHHHhhccccCC
Q 006431 81 NQRAREIYLKDWDFQRQRLPDNSN-VNKVRDFIKNVYVDRRYAGG 124 (645)
Q Consensus 81 N~rANeiwea~~~~~r~~~P~~sd-~~~rreFIraKY~eKrF~~~ 124 (645)
|.++|++||++++.. .+.|...+ ...+++||++||++|+|+..
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~ 137 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYP 137 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECC
Confidence 999999999999865 34555444 44566799999999999975
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.3e-31 Score=247.74 Aligned_cols=112 Identities=24% Similarity=0.472 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcChH
Q 006431 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (645)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWt~eEVe~Lq~gGN~ 82 (645)
.++..+++|+.|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| | +||||+||+|++++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccH
Confidence 4456778888899999999999999999999999999999999999999998 4 999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccc
Q 006431 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121 (645)
Q Consensus 83 rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF 121 (645)
++|++||++.... |.....++++.||.+||++|.-
T Consensus 99 ~an~~~e~~~~~~----~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 99 RARNYFKQVLGVN----FSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHTCTT----CCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CCCCHHHHHhhHHHHHHHHHHH
Confidence 9999999864322 3334457777899999998753
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=3.1e-30 Score=242.10 Aligned_cols=114 Identities=28% Similarity=0.538 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcChH
Q 006431 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQ 82 (645)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gGN~ 82 (645)
.+++++++|++|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| ++||||+||+|+++||+.|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4688999999999999999999999999999999999999999999999998 3999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCCCCCCc--------hHHHHHHHHHHHhhccccC
Q 006431 83 RAREIYLKDWDFQRQRLPDNSN--------VNKVRDFIKNVYVDRRYAG 123 (645)
Q Consensus 83 rANeiwea~~~~~r~~~P~~sd--------~~~rreFIraKY~eKrF~~ 123 (645)
++|+|||++.... |...- ...+|+.|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCC----CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999864211 11111 1235556666666666643
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=1.8e-30 Score=244.41 Aligned_cols=92 Identities=25% Similarity=0.588 Sum_probs=85.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeeeecCC-CCHHHHHHH
Q 006431 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (645)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDk-Wt~eEVe~L 76 (645)
|..+. .++.+++|+.|++.|+|++|||||+++|+|+|+|||||||++|+||||.|| | +||||+||. |++++|++|
T Consensus 8 m~~~~-k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDPS-KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCCC-HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred cccCC-HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH
Confidence 55543 356789999999999999999999999999999999999999999999999 4 999999995 999999999
Q ss_pred HhcChHHHHHHHhhcCC
Q 006431 77 QNGGNQRAREIYLKDWD 93 (645)
Q Consensus 77 q~gGN~rANeiwea~~~ 93 (645)
+.+||.++|++||+++.
T Consensus 87 ~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 87 QVGGNASASSFFHQHGC 103 (149)
T ss_dssp HTTCHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 99999999999999875
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=244.77 Aligned_cols=120 Identities=26% Similarity=0.516 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcCh
Q 006431 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGN 81 (645)
Q Consensus 5 ke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gGN 81 (645)
..++.++++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| ++|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 46778999999999999999999999999999999999999999999999998 399999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCCCC-CCchHHHHHHHHHHHhhccccCC
Q 006431 82 QRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (645)
Q Consensus 82 ~rANeiwea~~~~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~ 124 (645)
.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999765333443 45677888999999999998765
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=229.02 Aligned_cols=86 Identities=22% Similarity=0.604 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCC-CCHHHHHHHHhcChH
Q 006431 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK-FTSQEVEALQNGGNQ 82 (645)
Q Consensus 7 ~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDk-Wt~eEVe~Lq~gGN~ 82 (645)
+++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||+|| ++||||+||. |++++|+.|+.+||.
T Consensus 21 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~ 100 (144)
T 2p57_A 21 KTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNA 100 (144)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHH
Confidence 455778999999999999999999999999999999999999999999999 4999999996 999999999999999
Q ss_pred HHHHHHhhcC
Q 006431 83 RAREIYLKDW 92 (645)
Q Consensus 83 rANeiwea~~ 92 (645)
++|++|+++.
T Consensus 101 ~an~~~e~~g 110 (144)
T 2p57_A 101 NATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 11
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3e-28 Score=259.39 Aligned_cols=122 Identities=25% Similarity=0.497 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcC
Q 006431 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (645)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gG 80 (645)
++.+|.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+|| +|||||+||.|+.+++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 456888999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred hHHHHHHHhhcCCcccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 006431 81 NQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (645)
Q Consensus 81 N~rANeiwea~~~~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~k 125 (645)
|..+|++||+.++....+.|. .++...+++||++||++++|....
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 999999999999765444554 355667888999999999998753
No 12
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.6e-28 Score=231.21 Aligned_cols=87 Identities=29% Similarity=0.607 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeeeecCCCCHHHHHHHHhcCh
Q 006431 6 EEERNEKIIRGLMKL-PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (645)
Q Consensus 6 e~ErnekiLr~Llk~-PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSItLDkWt~eEVe~Lq~gGN 81 (645)
+....+++|++|++. |+|++|||||+++|+|||++||||||++|+||||.|| | +||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567889999999996 8999999999999999999999999999999999999 3 99999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 006431 82 QRAREIYLKDW 92 (645)
Q Consensus 82 ~rANeiwea~~ 92 (645)
.++|++|+++.
T Consensus 84 ~~an~~~e~~g 94 (163)
T 3sub_A 84 KKCQTYLENYG 94 (163)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=9.5e-28 Score=238.42 Aligned_cols=118 Identities=30% Similarity=0.535 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcChHHH
Q 006431 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRA 84 (645)
Q Consensus 8 ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gGN~rA 84 (645)
|+++++|+.|++.|+|+.|+|||+.+|+|+|+|||+|||++|+||||+|| ++|||++||.|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999999 499999999999999999999999999
Q ss_pred HHHHhhcCCcccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 006431 85 REIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (645)
Q Consensus 85 Neiwea~~~~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~k 125 (645)
|++||+.++.....+|. .++...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999998765443343 356778889999999999998763
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.5e-26 Score=231.91 Aligned_cols=88 Identities=31% Similarity=0.641 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcChH
Q 006431 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQ 82 (645)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gGN~ 82 (645)
..++++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|++++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 3578999999999999999999999999999999999999999999999998 3899999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 006431 83 RAREIYLKDWD 93 (645)
Q Consensus 83 rANeiwea~~~ 93 (645)
++|++||+.+.
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=81.80 E-value=1.5 Score=42.86 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=37.1
Q ss_pred CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCCceeeeecCCCCHHHHHHHHhcCh
Q 006431 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGN 81 (645)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSItLDkWt~eEVe~Lq~gGN 81 (645)
|.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-+
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 455799999998667889999999999996421 478888888865433
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=60.11 E-value=4.7 Score=31.12 Aligned_cols=36 Identities=22% Similarity=0.549 Sum_probs=30.1
Q ss_pred CCCCCcCCCC-CCCCeeEecchhhhhhhhhhhhhcCC
Q 006431 22 PNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (645)
Q Consensus 22 gNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (645)
..+.|++|++ .-|.|-.-..|..||-.|.-.++..|
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 5689999998 46789998889999999987776654
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=57.30 E-value=5.2 Score=30.45 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCCcCCCCC-CCCeeEecchhhhhhhhhhhhhcCC
Q 006431 24 RRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (645)
Q Consensus 24 k~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (645)
+.|++|+.. -|.|-.-..|-.||-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 579999984 6799999999999999987655543
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=51.11 E-value=6.7 Score=32.17 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCCCCcCCCC-CCCCeeEecchhhhhhhhhhhhhcCC
Q 006431 20 LPPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (645)
Q Consensus 20 ~PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (645)
......|++|+. .-|.|-.-..|-.||-.|.-..+..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 356789999998 46799999999999999987666544
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=49.05 E-value=8.6 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCCCCCcCCCC-CCCCeeEecchhhhhhhhhhhhhcCC
Q 006431 21 PPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (645)
Q Consensus 21 PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (645)
.+...|++|+. .-|.|-.-.-|-.||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 35689999997 56899999899999999987766544
No 20
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=48.36 E-value=17 Score=34.13 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCCCCCcCCCCCCCCee-Eecchhhhhhhhhhhh
Q 006431 21 PPNRRCINCNSLGPQYV-CTNFWTFVCMTCSGIH 53 (645)
Q Consensus 21 PgNk~CADCGa~~P~Wa-SvnfGVFVCi~CSGIH 53 (645)
..-.+|.+||.+=|.=- -.--++-.|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 55689999998532111 1122677899999875
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=40.97 E-value=14 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=27.2
Q ss_pred CCCCcCCCC-CCCCeeEecchhhhhhhhhhhhhc
Q 006431 23 NRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 23 Nk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
-+.|++||+ .-|.|-.-..|-+||..|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 478999997 578999988899999999866543
No 22
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=37.77 E-value=15 Score=31.04 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhh
Q 006431 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSG 51 (645)
Q Consensus 10 nekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSG 51 (645)
.++.++++ ......-.|.-||........ .||+.|-.|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45566666 556788899999986655554 59999999963
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=32.79 E-value=7.7 Score=35.03 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCCee-Eecchhhhhhhhhhh
Q 006431 22 PNRRCINCNSLGPQYV-CTNFWTFVCMTCSGI 52 (645)
Q Consensus 22 gNk~CADCGa~~P~Wa-SvnfGVFVCi~CSGI 52 (645)
+...|.+||...-.+. .-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4568999998644444 469999999999864
No 24
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=30.84 E-value=20 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCCCCcCCCC-CCCCeeE--ecchhhhhhhhhhhhhcC
Q 006431 22 PNRRCINCNS-LGPQYVC--TNFWTFVCMTCSGIHREF 56 (645)
Q Consensus 22 gNk~CADCGa-~~P~WaS--vnfGVFVCi~CSGIHR~L 56 (645)
....|++|+. .-|.|-. -.-| .||-.|.-.+|..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 4579999998 4689988 6777 7999998665553
No 25
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=30.28 E-value=38 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCCCcCCCCCCCCee-Eecchhhhhhhhhhhh
Q 006431 23 NRRCINCNSLGPQYV-CTNFWTFVCMTCSGIH 53 (645)
Q Consensus 23 Nk~CADCGa~~P~Wa-SvnfGVFVCi~CSGIH 53 (645)
-..|.+||.+=|.=- -.--++-.|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 579999998533111 1222577899999865
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=27.01 E-value=25 Score=30.10 Aligned_cols=31 Identities=13% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
|++.|.=||.... ...|||+.|..|.+.-|-
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997542 468999999999997663
No 27
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=26.04 E-value=30 Score=36.80 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=25.0
Q ss_pred CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
..+..|.=||....- ..|||..|..|.+..|.
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999986543 58999999999998765
No 28
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=25.96 E-value=26 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.670 Sum_probs=26.0
Q ss_pred CCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
.+..+.|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999743 3589999999999998875
No 29
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=25.39 E-value=31 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
.+..|.=||... ....|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999754 3589999999999998775
No 30
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=24.56 E-value=20 Score=32.90 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhcChHHHHHHHhhcC
Q 006431 67 KFTSQEVEALQNGGNQRAREIYLKDW 92 (645)
Q Consensus 67 kWt~eEVe~Lq~gGN~rANeiwea~~ 92 (645)
.|+++|+++|+..++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988876654
No 31
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=24.06 E-value=35 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
+...|.=||... ....||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 567899999754 3579999999999998775
No 32
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=24.01 E-value=30 Score=29.79 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
+.+..|.=||.... ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997543 468999999999998765
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.91 E-value=27 Score=36.11 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCcCCCCCCCCee-Eecchhhhhhhhhhhh
Q 006431 24 RRCINCNSLGPQYV-CTNFWTFVCMTCSGIH 53 (645)
Q Consensus 24 k~CADCGa~~P~Wa-SvnfGVFVCi~CSGIH 53 (645)
..|-+||...|.-+ ...-|-.||.+|.-|.
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 47999999754322 3456899999998765
No 34
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=22.00 E-value=37 Score=29.90 Aligned_cols=29 Identities=21% Similarity=0.637 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
..|.=||.... ...|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997542 468999999999997765
No 35
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.37 E-value=26 Score=32.93 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=24.7
Q ss_pred CCCCCcCCCCC-----CCCeeEecchhhhhhhhhhhhhc
Q 006431 22 PNRRCINCNSL-----GPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 22 gNk~CADCGa~-----~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
+.+.|+-|+.+ +.--.|..=...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56899999985 55555666677788888866553
No 36
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=21.34 E-value=38 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.552 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
....|.=||... ....||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 457899999754 2579999999999998765
No 37
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=20.76 E-value=33 Score=30.82 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 006431 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (645)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (645)
.+.+..|.=||... ....|||+.|..|.+..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999753 3589999999999998765
Done!