BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006433
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Domain From Human Galectin-4
Length = 164
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 329 PFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL 384
PF G F L+I GL+ + + +G+H+ F +R A + L + G+V L ++
Sbjct: 102 PFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLS-AFQRVDTLEIQGDVTLSYV 156
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 304 EESKAAWWLNRLIGRTKKVTVEWPYPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRT 363
E KAA L +L+G TVE+ Y +G + L + L+ H T + + P
Sbjct: 332 EMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLP--- 388
Query: 364 GFALEDATGLSVNGNVDLHFLFAASLPTSHPSFAPQKHLEMLTKWRAPPLPDGH 417
L+ A G+ ++ D+ L+ + P S + + TK + P+P GH
Sbjct: 389 AAQLQIAMGIPMHRISDIRTLYGMN-PHSASEIDFEFKTQDATKKQRRPIPKGH 441
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 304 EESKAAWWLNRLIGRTKKVTVEWPYPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRT 363
E KAA L +L+G TVE+ Y +G + L + L+ H T + + P
Sbjct: 331 EMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLP--- 387
Query: 364 GFALEDATGLSVNGNVDLHFLFAASLPTSHPSFAPQKHLEMLTKWRAPPLPDGH 417
L+ A G+ ++ D+ L+ + P S + + TK + P+P GH
Sbjct: 388 AAQLQIAMGIPMHRISDIRTLYGMN-PHSASEIDFEFKTQDATKKQRRPIPKGH 440
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNV 379
+PF FVL I + Y ITV+G+ + FP R L+ T S++G++
Sbjct: 108 FPFEREKPFVLVIVIQSDTYQITVNGKPLVDFPQR----LQGITRASLSGDL 155
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 39 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 92
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 93 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 133
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 37 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 90
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 91 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 131
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 46 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 99
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 100 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 140
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 46 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 99
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 100 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 140
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 45 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 98
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 99 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 139
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 45 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 98
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 99 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 139
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 155 KTKSESCPHSISLSGSDFVNRSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEG 214
+T+SE P +D + ++L LG+ T+VG P + H P + SL
Sbjct: 39 RTRSELLPFL-----TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATV 92
Query: 215 EEAVLVSQFMMELQGLKTVDGEDPPRIL--HFNPRLK----GDW 252
EE V+ + ++ L+ + E P L HF P +K GDW
Sbjct: 93 EETVVRDK---AVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 133
>pdb|2DYC|A Chain A, Crystal Structure Of The N-Terminal Domain Of Mouse
Galectin-4
Length = 158
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 329 PFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL-FAA 387
PF +G F L E Y + V+G + +R ++ T L V+G+++L + F
Sbjct: 93 PFQKGKHFELVFXVXPEHYKVVVNGNSFYEYGHR--LPVQXVTHLQVDGDLELQSINFLG 150
Query: 388 SLPTSHP 394
P + P
Sbjct: 151 GQPAAAP 157
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
pdb|1V6S|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
Length = 390
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 329 PFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAAS 388
PF EG L V A LEG V G + R G E +S G L FL +
Sbjct: 323 PFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLK-ERFGHVSTGGGASLEFLEKGT 381
Query: 389 LP 390
LP
Sbjct: 382 LP 383
>pdb|3AJZ|A Chain A, Crystal Structure Of Ancestral Congerin Con-Anc
Length = 135
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTG 364
+PF+ G F +TI ++ ++I + H FP R G
Sbjct: 78 FPFTAGEHFQITITFDIDTFYIQLPDGHKVEFPNRHG 114
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate
Kinase In The Open Conformation
Length = 390
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 329 PFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAAS 388
PF EG L V A LEG V G + R G E +S G L FL +
Sbjct: 323 PFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLK-ERFGHVSTGGGASLEFLEKGT 381
Query: 389 LP 390
LP
Sbjct: 382 LP 383
>pdb|3AK0|A Chain A, Crystal Structure Of Ancestral Congerin Con-Anc'-N28k
pdb|3AK0|B Chain B, Crystal Structure Of Ancestral Congerin Con-Anc'-N28k
Length = 135
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTG 364
+PF+ G F +TI ++ ++I + H FP R G
Sbjct: 78 FPFTAGEHFQITITFDIDTFYIQLPDGHKVEFPNRHG 114
>pdb|3AJY|A Chain A, Crystal Structure Of Ancestral Congerin Con-Anc
pdb|3AJY|C Chain C, Crystal Structure Of Ancestral Congerin Con-Anc
Length = 135
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL 384
+PFS G F +TI ++I + H FP R + E LS+ G+ L F+
Sbjct: 78 FPFSAGEYFEITITFDTNKFYIELLDGHKLEFPNR--YKKEALNFLSLAGDARLTFV 132
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 582 DVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKLQNQGKPQC 641
++ M + K NNSKP + + + C + D++ +Q +++ M K +GK +C
Sbjct: 308 NIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKC 367
>pdb|2YRO|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Protein From Human Galectin-8
Length = 155
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAA 387
+PFS G F + I + + + V+G H + +R L L +NG++ L + +
Sbjct: 91 FPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEINGDIHLLEVRSW 149
Query: 388 SLPTS 392
S P+S
Sbjct: 150 SGPSS 154
>pdb|1JSU|C Chain C, P27(Kip1)CYCLIN ACDK2 COMPLEX
Length = 84
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 566 IVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPR 624
+ D EKH ME+ S W F N KP+E + + + G + ++Y Y+ PR
Sbjct: 19 LTRDLEKH---CRDMEEASQRKWNFDFQNHKPLEGKYEWQEVEKGSLPEFY---YRPPR 71
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL 384
+PFS G F + I + + + V+G H + +R L L +NG D+H L
Sbjct: 233 FPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEING--DIHLL 286
>pdb|3OJB|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
Length = 139
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 328 YPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL 384
+PFS G F + I + + + V+G H + +R L L +NG D+H L
Sbjct: 83 FPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEING--DIHLL 136
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 582 DVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKLQNQGKPQC 641
++ M + K NNSKP + + + C + D++ +Q +++ M K +GK +C
Sbjct: 48 NIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKC 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,503,827
Number of Sequences: 62578
Number of extensions: 817173
Number of successful extensions: 1689
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 33
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)