Query 006433
Match_columns 645
No_of_seqs 381 out of 1963
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 23:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 5E-127 1E-131 1070.3 50.4 501 121-645 103-636 (636)
2 KOG2287 Galactosyltransferases 100.0 3.1E-55 6.6E-60 468.7 27.7 314 324-645 4-349 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.9E-41 4.1E-46 363.0 18.9 218 365-608 104-355 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 5.5E-38 1.2E-42 308.7 15.6 164 432-598 1-192 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 8E-30 1.7E-34 270.3 18.5 206 415-636 77-358 (382)
6 smart00276 GLECT Galectin. Gal 100.0 6.2E-30 1.3E-34 237.2 14.2 127 177-386 1-127 (128)
7 PF00337 Gal-bind_lectin: Gala 100.0 2.1E-29 4.6E-34 233.8 12.5 132 176-386 1-133 (133)
8 KOG2288 Galactosyltransferases 100.0 7.9E-29 1.7E-33 249.6 17.1 221 415-643 8-271 (274)
9 cd00070 GLECT Galectin/galacto 100.0 3.5E-29 7.5E-34 231.6 13.2 126 176-384 1-126 (127)
10 KOG3587 Galectin, galactose-bi 99.9 1.5E-24 3.4E-29 205.4 13.4 138 175-389 4-141 (143)
11 PF02434 Fringe: Fringe-like; 99.7 1.1E-16 2.4E-21 164.9 10.3 163 418-595 6-198 (252)
12 KOG2246 Galactosyltransferases 99.4 5.1E-13 1.1E-17 144.4 10.9 160 415-595 88-264 (364)
13 PLN03153 hypothetical protein; 99.1 1.1E-09 2.3E-14 121.7 13.7 110 484-609 207-318 (537)
14 KOG3708 Uncharacterized conser 97.5 0.00043 9.2E-09 77.0 9.5 187 418-634 26-244 (681)
15 PF13641 Glyco_tranf_2_3: Glyc 94.9 0.5 1.1E-05 46.5 13.2 103 487-595 86-198 (228)
16 PF01755 Glyco_transf_25: Glyc 91.9 1.4 3E-05 43.3 10.4 76 422-503 4-101 (200)
17 cd02520 Glucosylceramide_synth 91.8 1.5 3.3E-05 42.6 10.4 106 486-634 85-190 (196)
18 TIGR03472 HpnI hopanoid biosyn 91.7 3.3 7.1E-05 45.2 14.0 169 417-595 40-241 (373)
19 PF13506 Glyco_transf_21: Glyc 90.3 0.26 5.6E-06 48.4 3.5 105 486-595 30-142 (175)
20 cd04196 GT_2_like_d Subfamily 89.9 3 6.4E-05 40.1 10.5 104 486-593 78-190 (214)
21 cd02525 Succinoglycan_BP_ExoA 89.3 18 0.00039 35.5 15.8 106 486-595 80-196 (249)
22 cd06434 GT2_HAS Hyaluronan syn 88.9 5.4 0.00012 39.3 11.7 134 486-634 76-226 (235)
23 PRK11204 N-glycosyltransferase 88.8 8 0.00017 42.4 14.0 167 417-595 53-248 (420)
24 PRK14583 hmsR N-glycosyltransf 88.7 8.3 0.00018 43.1 14.3 166 417-595 74-269 (444)
25 cd02510 pp-GalNAc-T pp-GalNAc- 88.5 9.7 0.00021 39.8 13.9 108 486-595 82-213 (299)
26 cd06439 CESA_like_1 CESA_like_ 88.3 13 0.00029 37.0 14.2 102 486-595 108-217 (251)
27 cd04186 GT_2_like_c Subfamily 87.3 9.1 0.0002 34.8 11.4 80 486-595 73-153 (166)
28 cd06433 GT_2_WfgS_like WfgS an 86.6 16 0.00034 34.4 12.9 106 486-595 74-182 (202)
29 cd04184 GT2_RfbC_Mx_like Myxoc 85.8 32 0.0007 32.8 14.8 104 486-595 82-189 (202)
30 cd04192 GT_2_like_e Subfamily 85.4 24 0.00052 34.2 13.9 105 486-594 81-195 (229)
31 cd06435 CESA_NdvC_like NdvC_li 84.8 29 0.00062 34.3 14.3 127 487-633 84-221 (236)
32 cd06421 CESA_CelA_like CESA_Ce 84.8 3.3 7.1E-05 40.6 7.5 104 487-595 84-199 (234)
33 cd06420 GT2_Chondriotin_Pol_N 84.1 11 0.00025 35.3 10.6 91 486-595 78-168 (182)
34 PF13632 Glyco_trans_2_3: Glyc 83.1 4.3 9.3E-05 39.1 7.4 100 490-595 1-112 (193)
35 cd06532 Glyco_transf_25 Glycos 82.9 4.6 9.9E-05 37.4 7.2 94 422-569 2-116 (128)
36 cd04188 DPG_synthase DPG_synth 82.8 10 0.00023 37.0 10.1 111 486-602 81-206 (211)
37 COG1216 Predicted glycosyltran 82.7 30 0.00064 36.6 14.2 103 490-595 87-208 (305)
38 cd04187 DPM1_like_bac Bacteria 81.8 7.9 0.00017 36.7 8.6 83 486-568 79-164 (181)
39 PF04646 DUF604: Protein of un 80.5 2.6 5.7E-05 44.2 5.1 44 552-595 12-57 (255)
40 cd06423 CESA_like CESA_like is 80.4 8.2 0.00018 34.7 7.8 82 486-567 77-170 (180)
41 PF00535 Glycos_transf_2: Glyc 80.3 10 0.00022 34.1 8.5 81 486-566 77-168 (169)
42 TIGR03469 HonB hopene-associat 79.2 16 0.00035 40.0 11.1 104 488-595 134-250 (384)
43 PLN02726 dolichyl-phosphate be 75.8 52 0.0011 33.1 12.9 103 486-595 92-206 (243)
44 cd04191 Glucan_BSP_ModH Glucan 74.4 29 0.00062 36.2 10.8 130 486-632 94-243 (254)
45 cd02526 GT2_RfbF_like RfbF is 73.7 95 0.0021 30.4 15.1 106 487-595 75-192 (237)
46 cd04185 GT_2_like_b Subfamily 73.4 24 0.00052 33.9 9.4 84 486-595 78-162 (202)
47 COG1215 Glycosyltransferases, 72.3 1.1E+02 0.0025 33.2 15.3 192 418-633 54-277 (439)
48 cd04195 GT2_AmsE_like GT2_AmsE 69.7 40 0.00088 32.1 10.0 102 486-595 79-189 (201)
49 cd04179 DPM_DPG-synthase_like 66.5 25 0.00055 32.9 7.7 81 486-567 78-167 (185)
50 PF10111 Glyco_tranf_2_2: Glyc 66.4 1E+02 0.0023 32.1 13.0 129 465-595 47-210 (281)
51 cd06427 CESA_like_2 CESA_like_ 66.3 72 0.0016 31.9 11.4 104 487-595 84-200 (241)
52 cd06442 DPM1_like DPM1_like re 65.4 37 0.0008 33.0 8.9 79 486-567 77-167 (224)
53 cd06437 CESA_CaSu_A2 Cellulose 65.2 1.3E+02 0.0028 29.7 12.8 129 486-634 86-226 (232)
54 TIGR03111 glyc2_xrt_Gpos1 puta 61.0 1.7E+02 0.0037 32.8 14.1 167 417-591 48-250 (439)
55 cd02522 GT_2_like_a GT_2_like_ 57.3 1.1E+02 0.0024 29.6 10.5 98 487-595 72-175 (221)
56 TIGR01556 rhamnosyltran L-rham 56.3 73 0.0016 32.7 9.6 106 487-595 73-189 (281)
57 cd00761 Glyco_tranf_GTA_type G 53.4 1.5E+02 0.0032 25.6 11.4 74 487-593 77-151 (156)
58 TIGR03030 CelA cellulose synth 50.7 2.6E+02 0.0056 33.7 14.1 104 487-595 228-346 (713)
59 PRK10714 undecaprenyl phosphat 47.8 56 0.0012 35.2 7.3 80 486-568 89-174 (325)
60 PF00853 Runt: Runt domain; I 47.6 19 0.00041 34.1 3.1 30 314-354 88-126 (135)
61 PTZ00260 dolichyl-phosphate be 39.0 5.3E+02 0.012 27.9 15.0 179 415-600 67-288 (333)
62 PRK14716 bacteriophage N4 adso 38.7 6.9E+02 0.015 29.1 16.1 140 487-632 158-315 (504)
63 cd04190 Chitin_synth_C C-termi 37.1 40 0.00086 34.2 4.0 137 486-634 72-235 (244)
64 PRK05454 glucosyltransferase M 34.6 3E+02 0.0065 33.2 11.2 176 415-595 121-344 (691)
65 KOG3982 Runt and related trans 31.8 38 0.00082 37.5 2.9 29 314-353 185-222 (475)
66 PRK11498 bcsA cellulose syntha 30.0 4.9E+02 0.011 32.4 12.1 105 486-595 338-457 (852)
67 KOG2264 Exostosin EXT1L [Signa 23.3 85 0.0019 36.8 3.8 118 487-612 724-851 (907)
68 KOG1594 Uncharacterized enzyme 20.6 2.1E+02 0.0046 30.7 5.8 101 246-381 80-187 (305)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.4e-127 Score=1070.29 Aligned_cols=501 Identities=36% Similarity=0.663 Sum_probs=460.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccccccccc--C--CCCCCCCCCCCccc-ccCCcccCCCeeEEecCCCcCCcEEEEEE
Q 006433 121 VLHKIAKDAWSVGKKVWDELESAETISKTQI--E--PNKTKSESCPHSIS-LSGSDFVNRSHLMVLPCGLTLGSHVTVVG 195 (645)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~cp~sv~-~~~~~~~~~~~~~~lPcGL~~Gs~itV~G 195 (645)
.....|++||+||+.||++|.++++++.+.. + ..+.++++||+||+ ++++++.+++|++.|||||++|++|||+|
T Consensus 103 ~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G 182 (636)
T PLN03133 103 QVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIG 182 (636)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEE
Confidence 3456799999999999999998876433322 1 22456789999999 57777777889999999999999999999
Q ss_pred EeCCCCCCCchhhhhhcccccceeeceEEEEeccCccCCCCCCCeEEEEccccCCCCC-CCCEEEEeCcc-CCcccceee
Q 006433 196 KPHWAHPEDDPKIASLKEGEEAVLVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWS-GRPVIEMNTCY-RMQWGSALR 273 (645)
Q Consensus 196 ~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~iiLH~NpRl~gd~~-~~~vIv~Nt~~-~~~WG~eeR 273 (645)
+|+.. ++||+|||+|+...+++++||||||||||+|||+ ++|+||||||+ +|+||.|||
T Consensus 183 ~p~~~-------------------~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EER 243 (636)
T PLN03133 183 IPDGL-------------------LGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEER 243 (636)
T ss_pred EeCCC-------------------CCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhh
Confidence 99986 6999999999876666789999999999999985 68999999999 999999999
Q ss_pred ccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhh-cccccccccCCCCCCCCCeEEEEEEEcCCceEEEeC
Q 006433 274 CEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLI-GRTKKVTVEWPYPFSEGNLFVLTIAAGLEGYHITVD 352 (645)
Q Consensus 274 c~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fPF~~g~~F~lti~~g~eg~~v~Vn 352 (645)
|+||+|++| ++||||+|||||+|+|+.++++++++||+||+| +++++++.+|+|||++|++|++||+||.|||||+||
T Consensus 244 c~~~~~~~~-~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~Vn 322 (636)
T PLN03133 244 CPSPDPDKN-KKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVD 322 (636)
T ss_pred cCCCCcccc-ccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEEC
Confidence 999999999 699999999999999999999999999999999 779999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCCCCCccceeecccchhhhccccCCCCCCCCCcchhhhhhhccCCCCCC-CCCceEEEEEECCCCCH
Q 006433 353 GRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAASLPTSHPSFAPQKHLEMLTKWRAPPLP-DGHVELFIGILSAGNHF 431 (645)
Q Consensus 353 G~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV~~~sLP~s~~~f~~q~~~~~~~~l~~P~~c-~~~v~LLIlV~Sap~nf 431 (645)
|+|+|||+||+++++|.|++|+|+|||+|++|.+.++|.+|++ +|+.+++.|++|+++ +++++|||+|+|+|+||
T Consensus 323 G~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf 398 (636)
T PLN03133 323 GKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDS----EHVIDLEALKSPPLSPKKPLDLFIGVFSTANNF 398 (636)
T ss_pred CeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCch----hcccchHHhcCCCCCCCCceEEEEEEeCCcccH
Confidence 9999999999989999999999999999999999999999987 899999999999988 56799999999999999
Q ss_pred HHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE---------------------ecCCccE
Q 006433 432 AERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV---------------------RTVAANY 490 (645)
Q Consensus 432 ~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~---------------------~c~~aky 490 (645)
+||+|||+|||++...++..++++|+||.+.++.++..|.+|+++|+||||+ +|++++|
T Consensus 399 ~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akF 478 (636)
T PLN03133 399 KRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKY 478 (636)
T ss_pred HHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceE
Confidence 9999999999998766667799999999999899999999999999999998 6899999
Q ss_pred EEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCccccc--ccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHH
Q 006433 491 IMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQFIVA 568 (645)
Q Consensus 491 vmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~--sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~~I~~ 568 (645)
|||+|||+|||+++|+++|......+.+|+|++..+..|+|+ +|||||+++||.+.|||||+|+|||||+|+|++|+.
T Consensus 479 ilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~ 558 (636)
T PLN03133 479 VMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYK 558 (636)
T ss_pred EEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHH
Confidence 999999999999999999988776778999999999999997 999999999999999999999999999999999998
Q ss_pred HhhcCccCCCCCChHHHHHHHHHcCC-CCCcceeecccccccCccccEEEEEccCHHHHHHHHHHhhcCCCCCCCCCC
Q 006433 569 DFEKHKLRLFKMEDVSMGMWVEKFNN-SKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKLQNQGKPQCCNMR 645 (645)
Q Consensus 569 ~~~s~~~~~f~lEDV~iGi~l~klgi-~~PV~~~h~~~fc~~~C~~~~it~H~~sP~eM~~lW~~L~~~g~~~Ccn~~ 645 (645)
++.+..+++|++||||||+|+++++. .+++.|.|+.++|..+|..++|++|+++|.+|.++|++|++.++++|||++
T Consensus 559 ~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~~~ 636 (636)
T PLN03133 559 RHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCGEW 636 (636)
T ss_pred hhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecCCHHHHHHHHHHHhccCCCCccCCC
Confidence 64456899999999999999987642 245778889999999999999999999999999999999987889999975
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-55 Score=468.74 Aligned_cols=314 Identities=32% Similarity=0.511 Sum_probs=281.0
Q ss_pred ccCCCCCCCCCeEEEEEEEcCCceEEEeCCeEEEeecCCCCCCCCCCccceeecccchhhhccccCCCCCCCCCcchhhh
Q 006433 324 VEWPYPFSEGNLFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAASLPTSHPSFAPQKHLE 403 (645)
Q Consensus 324 ~~~~fPF~~g~~F~lti~~g~eg~~v~VnG~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV~~~sLP~s~~~f~~q~~~~ 403 (645)
..+.+|+..+..|+.++.++.+++++.++++|.++|.++..++.+..++...++.+..+.......+.+..++....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (349)
T KOG2287|consen 4 KEFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFFYL- 82 (349)
T ss_pred ccccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccChhh-
Confidence 4578999999999999999999999999999999999999888999999999999988888778888887665444333
Q ss_pred hhhccCCCCCCCC--CceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCCh-hhhHHHHHHHHHcCcE
Q 006433 404 MLTKWRAPPLPDG--HVELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRK-EVNLDLKKEAEYFGDI 480 (645)
Q Consensus 404 ~~~~l~~P~~c~~--~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~-~~~~~L~~Eae~ygDI 480 (645)
+..|+.|.. .++|+++|+|+++||+||+|||+|||++..+.+.+++++|++|.+.++ .+++.|.+|++.||||
T Consensus 83 ----l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDI 158 (349)
T KOG2287|consen 83 ----LYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDI 158 (349)
T ss_pred ----hcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCE
Confidence 445655533 489999999999999999999999999998889999999999998765 5789999999999999
Q ss_pred EEE----------------------ecCCccEEEEecCCeeeeHHHHHHHHhhc-CCCCceeeeeeccCCccccc--ccc
Q 006433 481 VIV----------------------RTVAANYIMKCDDDTFIRVDAVMKEARKV-REDKSLYIGNMNYYHRPLRH--GKW 535 (645)
Q Consensus 481 Iq~----------------------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~-~~~~~ly~G~v~~~~~P~R~--sKw 535 (645)
||+ +|++|+||||+|||+|||+++|+.+|... ++...+|+|++..+..|+|+ +||
T Consensus 159 i~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kw 238 (349)
T KOG2287|consen 159 IQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKW 238 (349)
T ss_pred EEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCC
Confidence 999 69999999999999999999999999999 77889999999998899997 999
Q ss_pred cccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHc-CCCCCcceeecc---cccccCc
Q 006433 536 AVTYEEWPEEEYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKF-NNSKPVEYVHSL---KFCQFGC 611 (645)
Q Consensus 536 yVp~eeyp~~~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~kl-gi~~PV~~~h~~---~fc~~~C 611 (645)
|||+++||.+.|||||+|+|||+|+|+|+.|+++ +.+.+++++|||+||+|+++. ||. |+++.+.. ..|+.+|
T Consensus 239 yVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~--s~~~~~~~iEDV~~g~~l~~~~gi~-~~~~~~~~~~~~~~~~~~ 315 (349)
T KOG2287|consen 239 YVPESEYPCSVYPPYASGPGYVISGDAARRLLKA--SKHLKFFPIEDVFVGGCLAEDLGIK-PVNHPGFFEIPLSFDPCC 315 (349)
T ss_pred ccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHH--hcCCCccchHHHHHHHHHHHhcCCC-cccCcccccccccCCCCc
Confidence 9999999999999999999999999999999995 789999999999999999998 887 77654422 3346778
Q ss_pred cccEEEEEccCHHHHHHHHHHhhcCCCCCCCCCC
Q 006433 612 IEDYYTAHYQSPRQMVCMWDKLQNQGKPQCCNMR 645 (645)
Q Consensus 612 ~~~~it~H~~sP~eM~~lW~~L~~~g~~~Ccn~~ 645 (645)
..+++++|+++|.+|.++|++++...+..||+.+
T Consensus 316 ~~~~~~~H~~~p~e~~~~w~~~~~~~~~~c~~~~ 349 (349)
T KOG2287|consen 316 YRDLLAVHRLSPNEMIYLWKKLKDLANLKCKNLR 349 (349)
T ss_pred ccceEEEecCCHHHHHHHHHHhhcccccccccCC
Confidence 8999999999999999999999965889999864
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.9e-41 Score=362.99 Aligned_cols=218 Identities=23% Similarity=0.376 Sum_probs=183.7
Q ss_pred CCCCCCccceeecccchhhhccccCCCCCCCCCcchhhhhhhccCCCCCCCCCceEEEEEECCCCCHHHHHHHHHHhccC
Q 006433 365 FALEDATGLSVNGNVDLHFLFAASLPTSHPSFAPQKHLEMLTKWRAPPLPDGHVELFIGILSAGNHFAERMAVRKSWMQH 444 (645)
Q Consensus 365 ~~l~~v~~l~i~GDV~l~sV~~~sLP~s~~~f~~q~~~~~~~~l~~P~~c~~~v~LLIlV~Sap~nf~rR~AIR~TWg~~ 444 (645)
+++|.+++.+ +.++.+.++|.++++ .+ + |...+.+++|+|+|+|+++|++||+|||+|||+.
T Consensus 104 le~el~~~~~------~~~~~~~~~~~~~~~----~~------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~ 165 (408)
T PLN03193 104 LEMELAAARA------AQESILNGSPISEDL----KK------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQ 165 (408)
T ss_pred HhHHHHHHHh------hhhhhccCCCccccc----cc------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 6778777776 666777788888765 11 1 3334667999999999999999999999999986
Q ss_pred ccc-----CCCcEEEEEEEeecC--ChhhhHHHHHHHHHcCcEEEE---------------------ecCCccEEEEecC
Q 006433 445 KLI-----TSSKVVARFFVALHG--RKEVNLDLKKEAEYFGDIVIV---------------------RTVAANYIMKCDD 496 (645)
Q Consensus 445 ~~~-----~~~~v~~~F~vG~~~--~~~~~~~L~~Eae~ygDIIq~---------------------~c~~akyvmKvDD 496 (645)
... ....++++|+||.+. +..++..|.+|+++|||||++ .+++++|+||+||
T Consensus 166 ~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DD 245 (408)
T PLN03193 166 GEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDD 245 (408)
T ss_pred cccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 542 235689999999986 568999999999999999998 4679999999999
Q ss_pred CeeeeHHHHHHHHhhcCCCCceeeeeeccCCccccc--ccccccccCC----CCCCCCCCCCCCeeEeCHHHHHHHHHHh
Q 006433 497 DTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTYEEW----PEEEYPPYANGPGYIVSSDIAQFIVADF 570 (645)
Q Consensus 497 DtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~--sKwyVp~eey----p~~~YPpY~~G~GYILS~dva~~I~~~~ 570 (645)
|+|||+++|+.+|.......++|+|++.. .|+|+ ++||++++.| |.+.|||||+|+|||||+|+|+.|+.+
T Consensus 246 DvfVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n- 322 (408)
T PLN03193 246 DVHVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISIN- 322 (408)
T ss_pred CceEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhC-
Confidence 99999999999998776556799999865 48886 7777777788 569999999999999999999999975
Q ss_pred hcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccc
Q 006433 571 EKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQ 608 (645)
Q Consensus 571 ~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~ 608 (645)
...++.|++|||+||+|+..++ |+|+|+.+||.
T Consensus 323 -~~~L~~y~~EDV~vG~Wl~~L~----V~~vdd~~fcc 355 (408)
T PLN03193 323 -QHVLHKYANEDVSLGSWFIGLD----VEHIDDRRLCC 355 (408)
T ss_pred -hhhhcccCcchhhhhhHhccCC----ceeeecccccC
Confidence 5678899999999999997666 45789999985
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5.5e-38 Score=308.74 Aligned_cols=164 Identities=31% Similarity=0.587 Sum_probs=150.9
Q ss_pred HHHHHHHHHhccCcccCCCcEEEEEEEeecC--ChhhhHHHHHHHHHcCcEEEE----------------------ecCC
Q 006433 432 AERMAVRKSWMQHKLITSSKVVARFFVALHG--RKEVNLDLKKEAEYFGDIVIV----------------------RTVA 487 (645)
Q Consensus 432 ~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~--~~~~~~~L~~Eae~ygDIIq~----------------------~c~~ 487 (645)
+||++||+||++.....+.+++++|+||.+. +..++..|.+|+++|+||||+ +|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999999877788999999999988 678888999999999999999 6899
Q ss_pred ccEEEEecCCeeeeHHHHHHHHhhc--CCCCceeeeeeccCCccccc--ccccccccCCCCCCCCCCCCCCeeEeCHHHH
Q 006433 488 ANYIMKCDDDTFIRVDAVMKEARKV--REDKSLYIGNMNYYHRPLRH--GKWAVTYEEWPEEEYPPYANGPGYIVSSDIA 563 (645)
Q Consensus 488 akyvmKvDDDtFVnvd~Ll~~L~~~--~~~~~ly~G~v~~~~~P~R~--sKwyVp~eeyp~~~YPpY~~G~GYILS~dva 563 (645)
++|++|+|||+|||+++|.++|... ......+.|.+.....|+|+ +|||+|+++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999988 44466777888888889997 8999999999999999999999999999999
Q ss_pred HHHHHHhhcCccCCCCCChHHHHHHHHHcCCCCCc
Q 006433 564 QFIVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPV 598 (645)
Q Consensus 564 ~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV 598 (645)
+.|+.. +..++.|++|||++|+|+.++||+ |+
T Consensus 161 ~~i~~~--~~~~~~~~~eDv~iGi~~~~~~i~-~~ 192 (195)
T PF01762_consen 161 KRIYKA--SSHTPFFPLEDVFIGILAEKLGIK-PI 192 (195)
T ss_pred HHHHHH--hhcCCCCCchHHHHHHHHHHCCCC-cc
Confidence 999996 677899999999999999999987 54
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=8e-30 Score=270.33 Aligned_cols=206 Identities=27% Similarity=0.345 Sum_probs=169.0
Q ss_pred CCCceEEEEEECCCCC--HHHHHHHHHHhccCcccC------CCcEEEEEEEeecCCh--hhhHHHHHHHHHcCcEEEE-
Q 006433 415 DGHVELFIGILSAGNH--FAERMAVRKSWMQHKLIT------SSKVVARFFVALHGRK--EVNLDLKKEAEYFGDIVIV- 483 (645)
Q Consensus 415 ~~~v~LLIlV~Sap~n--f~rR~AIR~TWg~~~~~~------~~~v~~~F~vG~~~~~--~~~~~L~~Eae~ygDIIq~- 483 (645)
.++-.++++|+|..++ |.||+++|+||+++..+. .+.+.++|++|.+++. +++++|++|+++|+|||++
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 4577899999999998 999999999999998765 5678999999999877 9999999999999999988
Q ss_pred ---------------------------------------ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeec
Q 006433 484 ---------------------------------------RTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMN 524 (645)
Q Consensus 484 ---------------------------------------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~ 524 (645)
.|++++||||+|||+|||+++++++|+..+. +.+|+|++.
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~pr-r~LY~G~v~ 235 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPR-HGLYMGRYN 235 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCC-CceEEEeeC
Confidence 5889999999999999999999999977764 669999998
Q ss_pred cCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhhcCcc---------------CCCCCChHHHHHHH
Q 006433 525 YYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQFIVADFEKHKL---------------RLFKMEDVSMGMWV 589 (645)
Q Consensus 525 ~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~~I~~~~~s~~~---------------~~f~lEDV~iGi~l 589 (645)
..+.|.|+. +||||+|+||+||+|+|+.|++.....++ -.+..||+++|.++
T Consensus 236 ~~~~p~Rd~-------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vL 302 (382)
T PTZ00210 236 YYNRIWRRN-------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMIL 302 (382)
T ss_pred CCCccccCC-------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHH
Confidence 877777753 59999999999999999999986322233 23557999999999
Q ss_pred H-HcCCCCCcceeeccccccc------Cc----cccEEEEEccCHHHHHHHHHHhhcC
Q 006433 590 E-KFNNSKPVEYVHSLKFCQF------GC----IEDYYTAHYQSPRQMVCMWDKLQNQ 636 (645)
Q Consensus 590 ~-klgi~~PV~~~h~~~fc~~------~C----~~~~it~H~~sP~eM~~lW~~L~~~ 636 (645)
+ +++.. ++-|+. ...|.| .| ..+.+++|+..+++-..+.+.+++.
T Consensus 303 r~~~k~~-~l~~V~-~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~ 358 (382)
T PTZ00210 303 REKVVYR-NLISVE-MGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEG 358 (382)
T ss_pred HHhcCcC-ceeeec-cccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCC
Confidence 5 45543 443322 223322 22 4578999999999999999998853
No 6
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=6.2e-30 Score=237.18 Aligned_cols=127 Identities=35% Similarity=0.505 Sum_probs=118.0
Q ss_pred eeEEecCCCcCCcEEEEEEEeCCCCCCCchhhhhhcccccceeeceEEEEeccCccCCCCCCCeEEEEccccCCCCCCCC
Q 006433 177 HLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEGEEAVLVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWSGRP 256 (645)
Q Consensus 177 ~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~iiLH~NpRl~gd~~~~~ 256 (645)
|...||+||.+|+.|+|.|+|... +++|.|||+.+ .++++|||||||. +.
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~-------------------~~~F~inl~~~------~~di~lH~n~rf~-----~~ 50 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPD-------------------AKRFSINLLTG------GDDIALHFNPRFN-----EN 50 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCC-------------------CCEEEEEeecC------CCCEEEEEeccCC-----CC
Confidence 356899999999999999999976 58999999973 3589999999998 57
Q ss_pred EEEEeCccCCcccceeeccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhhcccccccccCCCCCCCCCeE
Q 006433 257 VIEMNTCYRMQWGSALRCEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLIGRTKKVTVEWPYPFSEGNLF 336 (645)
Q Consensus 257 vIv~Nt~~~~~WG~eeRc~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~~F 336 (645)
+||+||+.+|.||.|||+ ..|||++|++|
T Consensus 51 ~iV~Ns~~~g~Wg~Eer~---------------------------------------------------~~~Pf~~g~~F 79 (128)
T smart00276 51 KIVCNSKLNGSWGSEERE---------------------------------------------------GGFPFQPGQPF 79 (128)
T ss_pred EEEEeCccCCccchheEc---------------------------------------------------CCCCCCCCCEE
Confidence 999999999999999998 46999999999
Q ss_pred EEEEEEcCCceEEEeCCeEEEeecCCCCCCCCCCccceeecccchhhhcc
Q 006433 337 VLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFA 386 (645)
Q Consensus 337 ~lti~~g~eg~~v~VnG~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV~~ 386 (645)
+|+|.++.++|+|+|||+|+++|+|| +++++|+.|.|.||++|++|.+
T Consensus 80 ~l~i~~~~~~f~i~vng~~~~~f~~R--~~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 80 DLTIIVQPDHFQIFVNGVHITTFPHR--LPLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEEEEEcCCEEEEEECCEeEEEecCC--CCcccEeEEEEeCCEEEEEEEE
Confidence 99999999999999999999999999 7899999999999999999875
No 7
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.96 E-value=2.1e-29 Score=233.84 Aligned_cols=132 Identities=31% Similarity=0.524 Sum_probs=120.7
Q ss_pred CeeEEecCCCcCCcEEEEEEEeCCCCCCCchhhhhhcccccceeeceEEEEeccCccCCCCCCCeEEEEccccCCCCCCC
Q 006433 176 SHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEGEEAVLVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWSGR 255 (645)
Q Consensus 176 ~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~iiLH~NpRl~gd~~~~ 255 (645)
+|++.||+||.+|+.|+|.|++... +++|.|||++.. ..+.++++|||||||. +
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~-------------------~~~f~inl~~~~--~~~~~~i~lH~~~rf~-----~ 54 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPD-------------------AKRFSINLQTGP--NDPDDDIALHFNPRFD-----E 54 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTT-------------------SSBEEEEEEES---STTTTEEEEEEEEECT-----T
T ss_pred CceEEcCCCCCCCcEEEEEEEECCC-------------------CCEEEEEecCCC--cCCCCCEEEEEEEEeC-----C
Confidence 5889999999999999999999976 589999999864 4568899999999999 5
Q ss_pred -CEEEEeCccCCcccceeeccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhhcccccccccCCCCCCCCC
Q 006433 256 -PVIEMNTCYRMQWGSALRCEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLIGRTKKVTVEWPYPFSEGN 334 (645)
Q Consensus 256 -~vIv~Nt~~~~~WG~eeRc~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~ 334 (645)
.+||+||+.+|.||.|||+ ..|||..|+
T Consensus 55 ~~~iv~Ns~~~g~Wg~Ee~~---------------------------------------------------~~~pf~~g~ 83 (133)
T PF00337_consen 55 QNVIVRNSRINGKWGQEERE---------------------------------------------------SPFPFQPGQ 83 (133)
T ss_dssp EEEEEEEEEETTEE-SEEEE---------------------------------------------------SSTSSTTTS
T ss_pred CceEEEeceECCEeccceee---------------------------------------------------eeeeecCCc
Confidence 8999999999999999996 579999999
Q ss_pred eEEEEEEEcCCceEEEeCCeEEEeecCCCCCCCCCCccceeecccchhhhcc
Q 006433 335 LFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFA 386 (645)
Q Consensus 335 ~F~lti~~g~eg~~v~VnG~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV~~ 386 (645)
+|+|+|.+..++|+|.|||+|+++|+|| +++++|+.|.|.|||+|++|.+
T Consensus 84 ~F~i~I~~~~~~f~I~vng~~~~~F~~R--~~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 84 PFEIRIRVEEDGFKIYVNGKHFCSFPHR--LPLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEEEEEEESSEEEEEETTEEEEEEE-S--SCGGGEEEEEEEESEEEEEEEE
T ss_pred eEEEEEEEecCeeEEEECCeEEEEeeCc--CCHHHcCEEEEECCEEEEEEEC
Confidence 9999999999999999999999999999 7889999999999999999864
No 8
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.9e-29 Score=249.55 Aligned_cols=221 Identities=27% Similarity=0.447 Sum_probs=181.8
Q ss_pred CCCceEEEEEECCCCCHHHHHHHHHHhccCc-----ccCCCcEEEEEEEee-cCChhhhHHHHHHHHHcCcEEEE-----
Q 006433 415 DGHVELFIGILSAGNHFAERMAVRKSWMQHK-----LITSSKVVARFFVAL-HGRKEVNLDLKKEAEYFGDIVIV----- 483 (645)
Q Consensus 415 ~~~v~LLIlV~Sap~nf~rR~AIR~TWg~~~-----~~~~~~v~~~F~vG~-~~~~~~~~~L~~Eae~ygDIIq~----- 483 (645)
..+++++|+|.|+++...||+++|+|||... ......+..+|++|. +...+...+|.+|.++|+|.+.+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 4578999999999999999999999999982 234568999999998 55678889999999999999998
Q ss_pred -----------------ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccc-cccccccccCCC-C
Q 006433 484 -----------------RTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLR-HGKWAVTYEEWP-E 544 (645)
Q Consensus 484 -----------------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R-~sKwyVp~eeyp-~ 544 (645)
..-+++|++|+|||+|||++.|...|.......++|+|++..+..+.+ .+|||-|+ |. .
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe--Wkfg 165 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE--WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh--hhcC
Confidence 246899999999999999999999999988778999999988766666 49999996 55 2
Q ss_pred CC--CCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCc--cccEEEEEc
Q 006433 545 EE--YPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGC--IEDYYTAHY 620 (645)
Q Consensus 545 ~~--YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C--~~~~it~H~ 620 (645)
+. |-+|+.|++|+||+|++..|..+ ...+..+..|||.+|-|+..++ |+++|+.++|...| ....+.++.
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in--~~lL~~y~nEDVSlGaW~~gld----V~h~dd~rlC~~~~~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISIN--RQLLHKYANEDVSLGAWMIGLD----VEHVDDPRLCCSTPKALAGMVCAAS 239 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHh--HHHHHhhccCCcccceeeeeee----eeEecCCcccccchhhhccceeeee
Confidence 33 99999999999999999999886 5668899999999999998766 55889999987655 223333332
Q ss_pred c---------CHHHHHHHHHHhhcCCCCCCCC
Q 006433 621 Q---------SPRQMVCMWDKLQNQGKPQCCN 643 (645)
Q Consensus 621 ~---------sP~eM~~lW~~L~~~g~~~Ccn 643 (645)
. +..+|...+..=-....++||-
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~ 271 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCS 271 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCc
Confidence 2 4467777776555455678874
No 9
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.96 E-value=3.5e-29 Score=231.59 Aligned_cols=126 Identities=37% Similarity=0.555 Sum_probs=117.0
Q ss_pred CeeEEecCCCcCCcEEEEEEEeCCCCCCCchhhhhhcccccceeeceEEEEeccCccCCCCCCCeEEEEccccCCCCCCC
Q 006433 176 SHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEGEEAVLVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWSGR 255 (645)
Q Consensus 176 ~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~iiLH~NpRl~gd~~~~ 255 (645)
++...|||||.+|+.|+|.|+|..+ +++|.|||+.+ ..+++|||||||. +
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~-------------------~~~f~Inl~~~------~~~i~lH~n~rf~-----~ 50 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPN-------------------AKRFSINLGTG------SSDIALHFNPRFD-----E 50 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCC-------------------CCEEEEEEecC------CCCEEEEEeeeCC-----C
Confidence 3567899999999999999999986 58999999973 2289999999999 6
Q ss_pred CEEEEeCccCCcccceeeccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhhcccccccccCCCCCCCCCe
Q 006433 256 PVIEMNTCYRMQWGSALRCEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLIGRTKKVTVEWPYPFSEGNL 335 (645)
Q Consensus 256 ~vIv~Nt~~~~~WG~eeRc~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~~ 335 (645)
++||+||+.+|.||.|||+ ..|||..|++
T Consensus 51 ~~IV~Ns~~~g~Wg~Eer~---------------------------------------------------~~~pf~~g~~ 79 (127)
T cd00070 51 NVIVRNSFLNGNWGPEERS---------------------------------------------------GGFPFQPGQP 79 (127)
T ss_pred CEEEEcCCCCCEecHhhcc---------------------------------------------------CCCCCCCCCe
Confidence 8999999999999999999 4699999999
Q ss_pred EEEEEEEcCCceEEEeCCeEEEeecCCCCCCCCCCccceeecccchhhh
Q 006433 336 FVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFL 384 (645)
Q Consensus 336 F~lti~~g~eg~~v~VnG~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV 384 (645)
|+|+|.++.++|+|.|||+|+++|+|| +++++|+.|.|.||+.+++|
T Consensus 80 F~l~i~~~~~~f~i~vng~~~~~F~~R--~~~~~i~~l~v~Gdv~i~~v 126 (127)
T cd00070 80 FELTILVEEDKFQIFVNGQHFFSFPHR--LPLESIDYLSINGDVSLTSV 126 (127)
T ss_pred EEEEEEEcCCEEEEEECCEeEEEecCc--CChhhEEEEEEeCCEEEEEe
Confidence 999999999999999999999999999 78899999999999999876
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=1.5e-24 Score=205.38 Aligned_cols=138 Identities=29% Similarity=0.475 Sum_probs=119.9
Q ss_pred CCeeEEecCCCcCCcEEEEEEEeCCCCCCCchhhhhhcccccceeeceEEEEeccCccCCCCCCCeEEEEccccCCCCCC
Q 006433 175 RSHLMVLPCGLTLGSHVTVVGKPHWAHPEDDPKIASLKEGEEAVLVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWSG 254 (645)
Q Consensus 175 ~~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~iiLH~NpRl~gd~~~ 254 (645)
.++...++++|.+|+.+++.|.+..+.+ .+|.++++..-..+. +.+++|||||||.
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~-~~dia~Hfnprf~----- 59 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIP------------------KRFAVNLRFGTNLDS-DSDIALHFNPRFD----- 59 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCC------------------CcceeeeEeecccCC-CCcEEEEEeccCC-----
Confidence 3567788999999999999999987643 456666655333333 5679999999999
Q ss_pred CCEEEEeCccCCcccceeeccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhhcccccccccCCCCCCCCC
Q 006433 255 RPVIEMNTCYRMQWGSALRCEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLIGRTKKVTVEWPYPFSEGN 334 (645)
Q Consensus 255 ~~vIv~Nt~~~~~WG~eeRc~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~ 334 (645)
+..||+||+.+|.||.|||. ..+||+.|+
T Consensus 60 ~~~VVrNs~~~g~Wg~eE~~---------------------------------------------------~~~PF~~g~ 88 (143)
T KOG3587|consen 60 EKGVVRNSLINGEWGLEERE---------------------------------------------------GGNPFQPGQ 88 (143)
T ss_pred CCeEEEecccCCccCchhhc---------------------------------------------------CCCCCCCCC
Confidence 55699999999999999998 569999999
Q ss_pred eEEEEEEEcCCceEEEeCCeEEEeecCCCCCCCCCCccceeecccchhhhccccC
Q 006433 335 LFVLTIAAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSVNGNVDLHFLFAASL 389 (645)
Q Consensus 335 ~F~lti~~g~eg~~v~VnG~h~~sF~yR~~~~l~~v~~l~i~GDV~l~sV~~~sL 389 (645)
+|.|+|.++.+.|+|.|||.|+++|+|| ++++.+..|.|+|||+|.+|.+...
T Consensus 89 ~F~l~I~~~~~~~~I~VNg~~f~~y~HR--~p~~~v~~l~i~Gdv~i~~i~~~~~ 141 (143)
T KOG3587|consen 89 PFDLTILVEEDKFQIFVNGVHFADYPHR--IPPSSVQTLQINGDVQITSIEFSNF 141 (143)
T ss_pred eEEEEEEEccCeEEEEECCEEEEeecCC--CCChheeEEEEeeeEEEEEEEEEcc
Confidence 9999999999999999999999999999 8999999999999999999987643
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.68 E-value=1.1e-16 Score=164.91 Aligned_cols=163 Identities=16% Similarity=0.254 Sum_probs=89.4
Q ss_pred ceEEEEEECCCCCHHHH-HHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE-------------
Q 006433 418 VELFIGILSAGNHFAER-MAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV------------- 483 (645)
Q Consensus 418 v~LLIlV~Sap~nf~rR-~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~------------- 483 (645)
-+|+|+|+|++++...| .+|++||++.+.. ..|+.....++.+... .-.+++.-
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~------~~~ifsd~~d~~l~~~------~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK------QTFIFSDAEDPSLPTV------TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG------GEEEEESS--HHHHHH------HGGGEEE-------------H
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC------ceEEecCccccccccc------cccccccCCCcchhhHHHHHH
Confidence 36899999999866555 7999999998762 2454333333332222 11122211
Q ss_pred ---------ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCccccc-ccccccccCCCCCCCCCCCCC
Q 006433 484 ---------RTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH-GKWAVTYEEWPEEEYPPYANG 553 (645)
Q Consensus 484 ---------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~-sKwyVp~eeyp~~~YPpY~~G 553 (645)
..++++|++++||||||++++|+++|..+++.+++|+|..... .|... .+. .....+...|.-..+|
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~-~~~~~~~~~--~~~~~~~~~~~f~~GG 150 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGD-RPIEIIHRF--NPNKSKDSGFWFATGG 150 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-------------------------EE-GG
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccC-ccceeeccc--cccccCcCceEeeCCC
Confidence 1357899999999999999999999999999999999997543 23221 000 0000112233323467
Q ss_pred CeeEeCHHHHHHHHHHhhcCcc-CCC----CCChHHHHHHHHH-cCCC
Q 006433 554 PGYIVSSDIAQFIVADFEKHKL-RLF----KMEDVSMGMWVEK-FNNS 595 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~~~-~~f----~lEDV~iGi~l~k-lgi~ 595 (645)
+||+||+.++++|......... ... ..||+.+|.|++. +||.
T Consensus 151 aG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~ 198 (252)
T PF02434_consen 151 AGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVP 198 (252)
T ss_dssp G-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---
T ss_pred eeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcc
Confidence 8999999999999654322222 222 3699999999999 8975
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.42 E-value=5.1e-13 Score=144.38 Aligned_cols=160 Identities=17% Similarity=0.253 Sum_probs=106.4
Q ss_pred CCCceEEEEEECCCCCHHHH-HHHHHHhccCccc----C---CC---cEEEEEEEeecCChhhhHHHHHHHHHcC-cEEE
Q 006433 415 DGHVELFIGILSAGNHFAER-MAVRKSWMQHKLI----T---SS---KVVARFFVALHGRKEVNLDLKKEAEYFG-DIVI 482 (645)
Q Consensus 415 ~~~v~LLIlV~Sap~nf~rR-~AIR~TWg~~~~~----~---~~---~v~~~F~vG~~~~~~~~~~L~~Eae~yg-DIIq 482 (645)
..+..++|+|+|++.+...| .++-+||++.+.. . +. ....+ +.+........-.+..++-+|= |-
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s~~~~~f~~v-~~~~~~g~~~~~~ktr~~~~yv~~~-- 164 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLSKDDSRFPTV-YYNLPDGYRSLWRKTRIAFKYVYDH-- 164 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccCcceecCccCCCCCCcCcee-eccCCcchHHHHHHHHHHHHHHHHh--
Confidence 45789999999999866666 5999999988751 0 10 01111 1121111111111222222221 11
Q ss_pred EecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHH
Q 006433 483 VRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDI 562 (645)
Q Consensus 483 ~~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dv 562 (645)
+-.+++|++|+|||||+.++||..+|.++++.+++|+|+... |. + ...| --+|+||++|.++
T Consensus 165 -~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~---~~------~------~~~y--~~g~ag~~ls~aa 226 (364)
T KOG2246|consen 165 -ILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK---SY------F------QNGY--SSGGAGYVLSFAA 226 (364)
T ss_pred -ccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc---cc------c------cccc--ccCCCCcceeHHH
Confidence 457899999999999999999999999999999999999753 11 1 1111 2378999999999
Q ss_pred HHHHHHHhh--cCccCC-C--CCChHHHHHHHHHcCCC
Q 006433 563 AQFIVADFE--KHKLRL-F--KMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 563 a~~I~~~~~--s~~~~~-f--~lEDV~iGi~l~klgi~ 595 (645)
.+.+++... ....+. . ..||+-||.|++.+||.
T Consensus 227 ~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~ 264 (364)
T KOG2246|consen 227 LRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVP 264 (364)
T ss_pred HHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCC
Confidence 999877532 111222 2 38999999999999986
No 13
>PLN03153 hypothetical protein; Provisional
Probab=99.08 E-value=1.1e-09 Score=121.66 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=79.8
Q ss_pred ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHH
Q 006433 484 RTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIA 563 (645)
Q Consensus 484 ~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva 563 (645)
+.++++|++++|||||+.++||++.|..++++++.|+|......... .. + .|--.-+|+||+||+.++
T Consensus 207 ~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn--~~-------f---~~~fA~GGAG~~LSrPLa 274 (537)
T PLN03153 207 GLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN--SY-------F---SHNMAFGGGGIAISYPLA 274 (537)
T ss_pred hCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc--cc-------c---ccccccCCceEEEcHHHH
Confidence 35889999999999999999999999999999999999875421110 00 0 011123889999999999
Q ss_pred HHHHHHhhcCcc--CCCCCChHHHHHHHHHcCCCCCcceeeccccccc
Q 006433 564 QFIVADFEKHKL--RLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQF 609 (645)
Q Consensus 564 ~~I~~~~~s~~~--~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~ 609 (645)
+.|......+.. +...-+|.-+|.|+.++||. + .|+.+|.|.
T Consensus 275 e~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~--L--T~~~gfhQ~ 318 (537)
T PLN03153 275 EALSRILDDCLDRYPKLYGSDDRLHACITELGVP--L--SREPGFHQW 318 (537)
T ss_pred HHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCC--c--eecCCcccc
Confidence 999886433321 22345899999999999974 4 345555543
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00043 Score=77.05 Aligned_cols=187 Identities=14% Similarity=0.198 Sum_probs=116.8
Q ss_pred ceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE-------------e
Q 006433 418 VELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV-------------R 484 (645)
Q Consensus 418 v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~-------------~ 484 (645)
-+|+++|+|.. .---+|-+|=+.+-. ++.||.+.+.-+..-..+ .+--+.|.=-. +
T Consensus 26 Erl~~aVmte~---tlA~a~NrT~ahhvp------rv~~F~~~~~i~~~~a~~--~~vs~~d~r~~~~~s~vl~~l~~~~ 94 (681)
T KOG3708|consen 26 ERLMAAVMTES---TLALAINRTLAHHVP------RVHLFADSSRIDNDLAQL--TNVSPYDLRGQKTHSMVLGLLFNMV 94 (681)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhcc------eeEEeeccccccccHhhc--cccCccccCccccHHHHHHHHHHhh
Confidence 35778888822 555688888887653 566777654211100000 00111221100 4
Q ss_pred cCCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHH
Q 006433 485 TVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQ 564 (645)
Q Consensus 485 c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~ 564 (645)
..+++|++-+-||||||...|++.+...+-+.++|+|.-...+ ... .-.+.||+||+.++.
T Consensus 95 ~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~g----------------s~r---C~l~~G~LLS~s~l~ 155 (681)
T KOG3708|consen 95 HNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDG----------------SGR---CRLDTGMLLSQSLLH 155 (681)
T ss_pred ccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCc----------------cCc---cccccceeecHHHHH
Confidence 5789999999999999999999999999988999999432110 111 234689999999999
Q ss_pred HHHHHhhcCcc-CCCCCChHHHHHHHHHc-CCC-CCcc-----eee---ccc----cccc-C--ccccEEEEEc-cCHHH
Q 006433 565 FIVADFEKHKL-RLFKMEDVSMGMWVEKF-NNS-KPVE-----YVH---SLK----FCQF-G--CIEDYYTAHY-QSPRQ 625 (645)
Q Consensus 565 ~I~~~~~s~~~-~~f~lEDV~iGi~l~kl-gi~-~PV~-----~~h---~~~----fc~~-~--C~~~~it~H~-~sP~e 625 (645)
+|-.+...+.- -.-.=.|+.+|.|+... |+. .|.+ |.+ +.+ +-.+ + -..+.+++|. ++|.+
T Consensus 156 ~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A~tv~pv~~p~d 235 (681)
T KOG3708|consen 156 ALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFRSALTVHPVLSPAD 235 (681)
T ss_pred HHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHhhhhccCccCCHHH
Confidence 99886432221 12223788999999865 665 2321 111 011 1111 1 1246789996 69999
Q ss_pred HHHHHHHhh
Q 006433 626 MVCMWDKLQ 634 (645)
Q Consensus 626 M~~lW~~L~ 634 (645)
|+.|++.+.
T Consensus 236 ~yrLH~yfs 244 (681)
T KOG3708|consen 236 MYRLHKYFS 244 (681)
T ss_pred HHHHHHHHH
Confidence 999998775
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.94 E-value=0.5 Score=46.51 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=54.4
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhc-CCCCceeeeeeccCCcc--cc-cc-----cccccccCCCCCCCC-CCCCCCee
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKV-REDKSLYIGNMNYYHRP--LR-HG-----KWAVTYEEWPEEEYP-PYANGPGY 556 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~-~~~~~ly~G~v~~~~~P--~R-~s-----KwyVp~eeyp~~~YP-pY~~G~GY 556 (645)
+.+|++.+|||+.+..+.|...+... .+.-.+..|.+...... .. -. .|+....... ..+. .++.|++.
T Consensus 86 ~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~ 164 (228)
T PF13641_consen 86 RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGR-RALGVAFLSGSGM 164 (228)
T ss_dssp --SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B----S-B--TEE
T ss_pred CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhh-cccceeeccCcEE
Confidence 58899999999999998888877776 33333444444322100 00 01 1111100000 1111 34689999
Q ss_pred EeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 557 IVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 557 ILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
++.+++++.+... . . ....||..++.-+.+.|..
T Consensus 165 ~~rr~~~~~~g~f-d-~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 165 LFRRSALEEVGGF-D-P---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp EEEHHHHHHH-S----S---SSSSHHHHHHHHHHHTT--
T ss_pred EEEHHHHHHhCCC-C-C---CCcccHHHHHHHHHHCCCc
Confidence 9999999988542 1 1 3445999999999998864
No 16
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=91.92 E-value=1.4 Score=43.32 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=44.0
Q ss_pred EEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhh----HHHHHHHHHc--CcEE-EE--ec-------
Q 006433 422 IGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVN----LDLKKEAEYF--GDIV-IV--RT------- 485 (645)
Q Consensus 422 IlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~----~~L~~Eae~y--gDII-q~--~c------- 485 (645)
|.|.|-+...+||+.|.+..... ++..-||-|.....-.. .....+.... +-.+ -+ -|
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~ 77 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKA 77 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHH
Confidence 46677788899999998877654 23456666654432111 2222221111 1111 11 11
Q ss_pred ------CCccEEEEecCCeeeeHH
Q 006433 486 ------VAANYIMKCDDDTFIRVD 503 (645)
Q Consensus 486 ------~~akyvmKvDDDtFVnvd 503 (645)
.+.+|++-..||+.++.+
T Consensus 78 w~~~v~~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 78 WQRIVDSGLEYALILEDDVIFDPD 101 (200)
T ss_pred HHHHHHcCCCeEEEEecccccccc
Confidence 367899999999999865
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.75 E-value=1.5 Score=42.63 Aligned_cols=106 Identities=12% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQF 565 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~~ 565 (645)
.+.+|++.+|+|+.+..+.|...+....... +|.+... ++.|++.++.+++.+.
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~---~~~v~~~-----------------------~~~g~~~~~r~~~~~~ 138 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPG---VGLVTCL-----------------------CAFGKSMALRREVLDA 138 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCC---CCeEEee-----------------------cccCceeeeEHHHHHh
Confidence 4579999999999999888887776643211 1222110 5789999999999998
Q ss_pred HHHHhhcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHHHHHHHHHhh
Q 006433 566 IVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKLQ 634 (645)
Q Consensus 566 I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~eM~~lW~~L~ 634 (645)
+--. .....+..||..+++-+.+.|.. +. ++. ...+|...|..+..+|+...
T Consensus 139 ~ggf---~~~~~~~~eD~~l~~rl~~~G~~--i~------~~~------~~~~~~~~~~~~~~~~~q~~ 190 (196)
T cd02520 139 IGGF---EAFADYLAEDYFLGKLIWRLGYR--VV------LSP------YVVMQPLGSTSLASFWRRQL 190 (196)
T ss_pred ccCh---HHHhHHHHHHHHHHHHHHHcCCe--EE------Ecc------hheeccCCcccHHHHHHHHH
Confidence 7432 11122336999999999888854 21 111 13445566666777776543
No 18
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=91.70 E-value=3.3 Score=45.17 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=90.5
Q ss_pred CceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCc--EEEE-----------
Q 006433 417 HVELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGD--IVIV----------- 483 (645)
Q Consensus 417 ~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygD--IIq~----------- 483 (645)
.+.+-|+|++.-....-.+.|+. ..+... ....++++...+.+.+. +.+++=.+.|.+ |...
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~S-l~~q~Y---p~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~~~G~~~K 114 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLAS-FCRQDY---PGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDARRHGPNRK 114 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHH-HHhcCC---CCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCCCCCCChH
Confidence 34566677765443333444432 222221 22555665554444332 333333455665 3222
Q ss_pred --------ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeeccCCccccc--c---cccccccCCCC-----
Q 006433 484 --------RTVAANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNYYHRPLRH--G---KWAVTYEEWPE----- 544 (645)
Q Consensus 484 --------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~~~~P~R~--s---KwyVp~eeyp~----- 544 (645)
...+.+|++.+|+|+.+..+.|...+......+ .+..|... ..+... + ...+....+|.
T Consensus 115 ~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 192 (373)
T TIGR03472 115 VSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMVAR 192 (373)
T ss_pred HHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 113569999999999999999988877764322 23323211 112111 1 11111111110
Q ss_pred -CCCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 545 -EEYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 545 -~~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
..-+.+|.|+++++.+++.+.+--. .. ....-.||+.+|.-+.+.|..
T Consensus 193 ~~~~~~~~~G~~~a~RR~~l~~iGGf-~~--~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 193 ALGRARFCFGATMALRRATLEAIGGL-AA--LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hccCCccccChhhheeHHHHHHcCCh-HH--hcccchHHHHHHHHHHHcCCe
Confidence 0113468899999999999988532 11 122335999999999998865
No 19
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=90.34 E-value=0.26 Score=48.38 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=67.2
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccCCccccc-----cccccc--ccCCCCCCCCCCCCCCeeE
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYYHRPLRH-----GKWAVT--YEEWPEEEYPPYANGPGYI 557 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~~~P~R~-----sKwyVp--~eeyp~~~YPpY~~G~GYI 557 (645)
.+++|++..|+|+.|+.+.|...+..+... -.+..| +.. ..|.+. .+-++. ...+..-.-.++|.|+.++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~ 107 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG-LPR-GVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMA 107 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe-ccc-ccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceecceee
Confidence 568999999999999999999988776542 233322 221 222222 111110 0000001246789999999
Q ss_pred eCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 558 VSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 558 LS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.+++++.+--. ..+...--||.++|..+.+.|..
T Consensus 108 ~rr~~L~~~GG~---~~l~~~ladD~~l~~~~~~~G~~ 142 (175)
T PF13506_consen 108 FRREALEEIGGF---EALADYLADDYALGRRLRARGYR 142 (175)
T ss_pred eEHHHHHHcccH---HHHhhhhhHHHHHHHHHHHCCCe
Confidence 999999987321 12233556999999999999976
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.92 E-value=3 Score=40.10 Aligned_cols=104 Identities=11% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhh-cC-CCCceeeeeecc---CCccccccccccc----ccCCCCCCCCCCCCCCee
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARK-VR-EDKSLYIGNMNY---YHRPLRHGKWAVT----YEEWPEEEYPPYANGPGY 556 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~-~~-~~~~ly~G~v~~---~~~P~R~sKwyVp----~eeyp~~~YPpY~~G~GY 556 (645)
.+.+|++..|+|.+...+.|...+.. .. +...++.|.... .........+... ...+.......++.|+++
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTM 157 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCcee
Confidence 57899999999999998888888876 22 223344444321 1111111111000 001111122346689999
Q ss_pred EeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcC
Q 006433 557 IVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFN 593 (645)
Q Consensus 557 ILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klg 593 (645)
++.+++++.+... .. .....||.++.+.+.+.+
T Consensus 158 ~~r~~~~~~~~~~--~~--~~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 158 AFNRELLELALPF--PD--ADVIMHDWWLALLASAFG 190 (214)
T ss_pred eEEHHHHHhhccc--cc--cccccchHHHHHHHHHcC
Confidence 9999999987552 11 115679998887777654
No 21
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=89.35 E-value=18 Score=35.54 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=59.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccC-Cccccc-------ccccccccCCCC--CCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYY-HRPLRH-------GKWAVTYEEWPE--EEYPPYANGP 554 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~-~~P~R~-------sKwyVp~eeyp~--~~YPpY~~G~ 554 (645)
.+.+|++.+|||..+..+.|...+...... ..+..|..... ..+... +.+......+.. ...=.++.|+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVH 159 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccc
Confidence 368999999999999988888877554332 23344443221 111110 000000000000 1001145778
Q ss_pred eeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 555 GYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 555 GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.++++++.+.+.-. .. .....||..++.-+.+.|..
T Consensus 160 ~~~~~~~~~~~~g~~--~~--~~~~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 160 HGAYRREVFEKVGGF--DE--SLVRNEDAELNYRLRKAGYK 196 (249)
T ss_pred cceEEHHHHHHhCCC--Cc--ccCccchhHHHHHHHHcCcE
Confidence 889999998877421 11 23446999999888888754
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.93 E-value=5.4 Score=39.26 Aligned_cols=134 Identities=13% Similarity=0.007 Sum_probs=72.0
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeeccCC---ccccc-ccccccc-------cCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNYYH---RPLRH-GKWAVTY-------EEWPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~~~---~P~R~-sKwyVp~-------eeyp~~~YPpY~~G 553 (645)
.+.+|++.+|+|+.+..+.|...+......+ .+..|...... .+... +..+... ...... --++++|
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G 154 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSG 154 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccC
Confidence 4789999999999999999988887774222 22222221111 11100 0000000 000011 1124678
Q ss_pred CeeEeCHHHHHHHHHHhh-----cCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHHHHH
Q 006433 554 PGYIVSSDIAQFIVADFE-----KHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVC 628 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~-----s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~eM~~ 628 (645)
++.++.+++++.+.-... ....+....||.+++.-+.+.|.. +.| +. ..++.|+ .|..+..
T Consensus 155 ~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~--~~~------~~-----~~~~~~~-~~~~~~~ 220 (235)
T cd06434 155 RTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYK--TVY------QY-----TSEAYTE-TPENYKK 220 (235)
T ss_pred cHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCe--EEE------ec-----CCeEEEE-cchhHHH
Confidence 888888888876543200 011234566999998888887764 212 11 2344444 6666666
Q ss_pred HHHHhh
Q 006433 629 MWDKLQ 634 (645)
Q Consensus 629 lW~~L~ 634 (645)
+|++..
T Consensus 221 ~~~q~~ 226 (235)
T cd06434 221 FLKQQL 226 (235)
T ss_pred HHHHhh
Confidence 665543
No 23
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.79 E-value=8 Score=42.44 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=89.3
Q ss_pred CceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE-------------
Q 006433 417 HVELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV------------- 483 (645)
Q Consensus 417 ~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~------------- 483 (645)
.+.+-|+|++.-+. ..|++|-.+-........ -++++....+++..+.+++..+.|..+...
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~~q~yp~~-eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln 127 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLLALRYPNY-EVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALN 127 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHHhCCCCCe-EEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHH
Confidence 34577777765433 345555433211111122 334454444444455555556666656544
Q ss_pred ---ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCC--ceeeeeeccCCcccccccccccccCCC-----------CCCC
Q 006433 484 ---RTVAANYIMKCDDDTFIRVDAVMKEARKVREDK--SLYIGNMNYYHRPLRHGKWAVTYEEWP-----------EEEY 547 (645)
Q Consensus 484 ---~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~--~ly~G~v~~~~~P~R~sKwyVp~eeyp-----------~~~Y 547 (645)
...+.+|++..|+|+.+..+.|...++...... .+..|.......-...++... .+|. ....
T Consensus 128 ~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 205 (420)
T PRK11204 128 TGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQV--GEFSSIIGLIKRAQRVYGR 205 (420)
T ss_pred HHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHH--HHHHHhhhHHHHHHHHhCC
Confidence 124689999999999999998888877653211 222222211000000011000 0000 0011
Q ss_pred CCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 548 PPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 548 PpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+..++|++.++.+++++.+--. -+..-.||+.++.-+.+.|..
T Consensus 206 ~~~~~G~~~~~rr~~l~~vgg~-----~~~~~~ED~~l~~rl~~~G~~ 248 (420)
T PRK11204 206 VFTVSGVITAFRKSALHEVGYW-----STDMITEDIDISWKLQLRGWD 248 (420)
T ss_pred ceEecceeeeeeHHHHHHhCCC-----CCCcccchHHHHHHHHHcCCe
Confidence 2245789999999999876321 122346999999999888865
No 24
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=88.75 E-value=8.3 Score=43.13 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=88.2
Q ss_pred CceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE-------------
Q 006433 417 HVELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV------------- 483 (645)
Q Consensus 417 ~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~------------- 483 (645)
.+.+-|+|++--+... |++|-.+-......+.. ++++....+++..+.+.+..+++..+...
T Consensus 74 ~p~vsViIP~yNE~~~----i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN 148 (444)
T PRK14583 74 HPLVSILVPCFNEGLN----ARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALR 148 (444)
T ss_pred CCcEEEEEEeCCCHHH----HHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHH
Confidence 3457777777654433 34443221111112334 34444333344445555555667655443
Q ss_pred ---ecCCccEEEEecCCeeeeHHHHHHHHhhcC--CCCceeeeeeccCCccccccccccc------------ccCCCCCC
Q 006433 484 ---RTVAANYIMKCDDDTFIRVDAVMKEARKVR--EDKSLYIGNMNYYHRPLRHGKWAVT------------YEEWPEEE 546 (645)
Q Consensus 484 ---~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~--~~~~ly~G~v~~~~~P~R~sKwyVp------------~eeyp~~~ 546 (645)
...+.+|++..|.|+.+..+.|...+.... +.-....|.........--++.... ...| +
T Consensus 149 ~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-g-- 225 (444)
T PRK14583 149 MGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVY-G-- 225 (444)
T ss_pred HHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHh-C--
Confidence 224689999999999999999888776542 2112222222110000000111100 0111 1
Q ss_pred CCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 547 YPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 547 YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
-+..++|.+..+.+++++.+--. . +..-.||..++.-+...|..
T Consensus 226 ~~~~~sG~~~~~rr~al~~vGg~--~---~~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 226 QVFTVSGVVAAFRRRALADVGYW--S---PDMITEDIDISWKLQLKHWS 269 (444)
T ss_pred CceEecCceeEEEHHHHHHcCCC--C---CCcccccHHHHHHHHHcCCe
Confidence 12245788999999999877421 1 12346999999999988865
No 25
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=88.54 E-value=9.7 Score=39.76 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccC---------Ccc-ccc-------cccccccc-----CC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYY---------HRP-LRH-------GKWAVTYE-----EW 542 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~---------~~P-~R~-------sKwyVp~e-----ey 542 (645)
...+|++..|+|+.+..+-|...+...... ..+..+.+... ..+ .+. ..|..... ..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 367999999999999888777777654322 22232222110 000 010 01111100 00
Q ss_pred C-CCCCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 543 P-EEEYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 543 p-~~~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+ ....-+++.|+++++++++.+.+--. ...+..+..||+-+..=+.+.|..
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf--De~~~~~~~ED~Dl~~R~~~~G~~ 213 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY--DEGMDIWGGENLELSFKVWQCGGS 213 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC--CCcccccCchhHHHHHHHHHcCCe
Confidence 1 12334577899999999999988432 223334456999988877777765
No 26
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=88.27 E-value=13 Score=37.03 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccCCcc--ccccccccccc----CCC-CCCCCCCCCCCeeE
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYYHRP--LRHGKWAVTYE----EWP-EEEYPPYANGPGYI 557 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~~~P--~R~sKwyVp~e----eyp-~~~YPpY~~G~GYI 557 (645)
.+.+|++.+|+|+++..+.|.+.+...... -.+..|........ .+....+.... .+. ....+..+.|+++.
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVGANGAIYA 187 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeeeecchHHH
Confidence 356999999999999988788777776432 23444544321111 01111000000 000 11223456777777
Q ss_pred eCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 558 VSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 558 LS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.+++.+ .+ ......||..++..+.+.|..
T Consensus 188 ~rr~~~~----~~----~~~~~~eD~~l~~~~~~~G~~ 217 (251)
T cd06439 188 IRRELFR----PL----PADTINDDFVLPLRIARQGYR 217 (251)
T ss_pred hHHHHhc----CC----CcccchhHHHHHHHHHHcCCe
Confidence 7777665 11 112336999999888888854
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.31 E-value=9.1 Score=34.85 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQ 564 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~ 564 (645)
.+.+|++.+|||.++..+.+...+....... -..++.. +.|++.++++++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------------------VSGAFLLVRREVFE 125 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------------------CceeeEeeeHHHHH
Confidence 3789999999999999998888876543222 1222221 68899999999998
Q ss_pred HHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 565 FIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 565 ~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
.+... .... ....||..+.+-+...|.+
T Consensus 126 ~~~~~--~~~~-~~~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 126 EVGGF--DEDF-FLYYEDVDLCLRARLAGYR 153 (166)
T ss_pred HcCCC--Chhh-hccccHHHHHHHHHHcCCe
Confidence 76421 1111 1256999998888777754
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.57 E-value=16 Score=34.39 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=62.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhc--CCCCceeeeeeccCCcccc-cccccccccCCCCCCCCCCCCCCeeEeCHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKV--REDKSLYIGNMNYYHRPLR-HGKWAVTYEEWPEEEYPPYANGPGYIVSSDI 562 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~--~~~~~ly~G~v~~~~~P~R-~sKwyVp~eeyp~~~YPpY~~G~GYILS~dv 562 (645)
.+.+|++.+|+|.++..+.+...+... .+...+..|.......... ...+..............++.+++.++++++
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSL 153 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHH
Confidence 467999999999999988888877333 2234555566432111111 1111111111112233456788899999999
Q ss_pred HHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 563 AQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 563 a~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
.+.+.. + .. .+...||..+..-+.+.|..
T Consensus 154 ~~~~~~-f-~~--~~~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 154 FEKYGG-F-DE--SYRIAADYDLLLRLLLAGKI 182 (202)
T ss_pred HHHhCC-C-ch--hhCchhhHHHHHHHHHcCCc
Confidence 988742 1 11 12345899888777777754
No 29
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.76 E-value=32 Score=32.77 Aligned_cols=104 Identities=10% Similarity=0.153 Sum_probs=57.6
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhc-C-CCCceeeeeeccCC-cccccccccccccCCCCCC-CCCCCCCCeeEeCHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKV-R-EDKSLYIGNMNYYH-RPLRHGKWAVTYEEWPEEE-YPPYANGPGYIVSSD 561 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~-~-~~~~ly~G~v~~~~-~P~R~sKwyVp~eeyp~~~-YPpY~~G~GYILS~d 561 (645)
...+|++..|+|..+..+.|...+... . +.-.++++...... .......++.+ .|.... +..-+.|++-+++++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~ 159 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKP--DWSPDLLLSQNYIGHLLVYRRS 159 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCC--CCCHHHhhhcCCccceEeEEHH
Confidence 467999999999999998888888765 2 22334444332110 00000111111 111111 111234556688998
Q ss_pred HHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 562 IAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 562 va~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+++.+.-. . . .....||..+++-+.+.|..
T Consensus 160 ~~~~iggf-~-~--~~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 160 LVRQVGGF-R-E--GFEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred HHHHhCCC-C-c--CcccchhHHHHHHHHhccce
Confidence 88876421 1 1 23356999998888877754
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.40 E-value=24 Score=34.17 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=62.0
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCC-CCceeeeeeccCCccc----c--cccccccc---cCCCCCCCCCCCCCCe
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRE-DKSLYIGNMNYYHRPL----R--HGKWAVTY---EEWPEEEYPPYANGPG 555 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~-~~~ly~G~v~~~~~P~----R--~sKwyVp~---eeyp~~~YPpY~~G~G 555 (645)
.+.+|++.+|+|..+..+.|...+..... ....+.|..... .+. + .-.+.... ..+....+|..+.|++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGAN 159 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccce
Confidence 45799999999999998888888764432 234555554332 110 0 00010000 0112234566778999
Q ss_pred eEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCC
Q 006433 556 YIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNN 594 (645)
Q Consensus 556 YILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi 594 (645)
+.+++++.+.+--. ........||..++.-+.+.|.
T Consensus 160 ~~~rr~~~~~~ggf---~~~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 160 MAYRKEAFFEVGGF---EGNDHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEEHHHHHHhcCC---ccccccccCCHHHHHHHHHhCC
Confidence 99999999987432 1112344688887766655554
No 31
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=84.80 E-value=29 Score=34.27 Aligned_cols=127 Identities=12% Similarity=0.070 Sum_probs=71.6
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeecc-C--Cccccc-ccc-----ccc-ccCCCCCCCCCCCCCCe
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNY-Y--HRPLRH-GKW-----AVT-YEEWPEEEYPPYANGPG 555 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~-~--~~P~R~-sKw-----yVp-~eeyp~~~YPpY~~G~G 555 (645)
+++|++..|+|+.+..+.|...+......+ .+..|.... . ..+... ..| +.+ ........ -.++.|++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 162 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERN-AIIQHGTM 162 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccC-ceEEecce
Confidence 368999999999999999998887764322 122121111 0 011110 111 000 00000000 12568888
Q ss_pred eEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHHHHHHHHHh
Q 006433 556 YIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKL 633 (645)
Q Consensus 556 YILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~eM~~lW~~L 633 (645)
.++++++.+.+--. . ..+..||+.++.-+.+.|.. +.+.+ + ...|...|..+..+++.-
T Consensus 163 ~~~rr~~~~~iGgf-~----~~~~~eD~dl~~r~~~~G~~--~~~~~-----------~-~~~~~~~~~~~~~~~~q~ 221 (236)
T cd06435 163 CLIRRSALDDVGGW-D----EWCITEDSELGLRMHEAGYI--GVYVA-----------Q-SYGHGLIPDTFEAFKKQR 221 (236)
T ss_pred EEEEHHHHHHhCCC-C----CccccchHHHHHHHHHCCcE--EEEcc-----------h-hhccCcCcccHHHHHHHH
Confidence 99999999987431 1 12347999999988888864 22221 1 223567777777766654
No 32
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=84.75 E-value=3.3 Score=40.61 Aligned_cols=104 Identities=12% Similarity=0.040 Sum_probs=62.5
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCCc--eeeeeecc-CCcc----ccc----ccccccccCCCC-CCCCCCCCCC
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDKS--LYIGNMNY-YHRP----LRH----GKWAVTYEEWPE-EEYPPYANGP 554 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~--ly~G~v~~-~~~P----~R~----sKwyVp~eeyp~-~~YPpY~~G~ 554 (645)
+.+|++.+|+|+++..+.|...+........ +..|.... .... .+. ...+........ .....++.|+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGS 163 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCc
Confidence 6799999999999999988888876643222 22232211 1111 110 011111100000 1124567899
Q ss_pred eeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 555 GYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 555 GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.++++++.+.+.-. . ..+..||..++.-+.+.|..
T Consensus 164 ~~~~r~~~~~~ig~~-~----~~~~~eD~~l~~r~~~~g~~ 199 (234)
T cd06421 164 GAVVRREALDEIGGF-P----TDSVTEDLATSLRLHAKGWR 199 (234)
T ss_pred eeeEeHHHHHHhCCC-C----ccceeccHHHHHHHHHcCce
Confidence 999999999987432 1 23447999999999888864
No 33
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=84.13 E-value=11 Score=35.29 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=57.9
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQF 565 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~~ 565 (645)
.+.+|++..|+|..+..+.|...++...+ .....|........ . -.....|+++.+.+..+..
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~~~~~~----~------------~~~~~~~~~~~~~r~~~~~ 140 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRVLLNEK----L------------TERGIRGCNMSFWKKDLLA 140 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEecceeecccc----c------------ceeEeccceEEEEHHHHHH
Confidence 45799999999999998888887776633 33333443211110 0 0134567888888888775
Q ss_pred HHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 566 IVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 566 I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.-. .........||+.++.-+.+.|+.
T Consensus 141 ~ggf--~~~~~~~~~eD~~l~~r~~~~g~~ 168 (182)
T cd06420 141 VNGF--DEEFTGWGGEDSELVARLLNSGIK 168 (182)
T ss_pred hCCC--CcccccCCcchHHHHHHHHHcCCc
Confidence 5331 122223347999999988888853
No 34
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=83.08 E-value=4.3 Score=39.07 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred EEEEecCCeeeeHHHHHHHHhhcC-CCCceeeeeeccCCccccc--cccccccc---------CCCCCCCCCCCCCCeeE
Q 006433 490 YIMKCDDDTFIRVDAVMKEARKVR-EDKSLYIGNMNYYHRPLRH--GKWAVTYE---------EWPEEEYPPYANGPGYI 557 (645)
Q Consensus 490 yvmKvDDDtFVnvd~Ll~~L~~~~-~~~~ly~G~v~~~~~P~R~--sKwyVp~e---------eyp~~~YPpY~~G~GYI 557 (645)
||+-+|+|+-+..+-|.+.+.... +.-.+.-|.+... +..+ .++..... ....-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 789999999999998888876665 2223333333221 1111 11111110 00112456788999999
Q ss_pred eCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 558 VSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 558 LS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+++++++.+.-. . -.....||..++.-+.+.|.+
T Consensus 79 ~r~~~l~~vg~~---~-~~~~~~ED~~l~~~l~~~G~~ 112 (193)
T PF13632_consen 79 FRREALREVGGF---D-DPFSIGEDMDLGFRLRRAGYR 112 (193)
T ss_pred eeHHHHHHhCcc---c-ccccccchHHHHHHHHHCCCE
Confidence 999999987532 1 234556999999999888865
No 35
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=82.89 E-value=4.6 Score=37.44 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=59.1
Q ss_pred EEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHH-----HHcCcEEE-E------------
Q 006433 422 IGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEA-----EYFGDIVI-V------------ 483 (645)
Q Consensus 422 IlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Ea-----e~ygDIIq-~------------ 483 (645)
|.|.|-+...+||..+++.-.... +...||-|..........+.... ..++--+. +
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~------~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w 75 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALG------LDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLW 75 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC------CCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHH
Confidence 456777888899999998554432 34556666544322222222221 11222211 1
Q ss_pred -ec--CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCH
Q 006433 484 -RT--VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSS 560 (645)
Q Consensus 484 -~c--~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~ 560 (645)
.+ .+.++++-..||+.+..+ +..||++|+
T Consensus 76 ~~~~~~~~~~alIlEDDv~~~~~------------------------------------------------~~~~Y~vs~ 107 (128)
T cd06532 76 QKIVESNLEYALILEDDAILDPD------------------------------------------------GTAGYLVSR 107 (128)
T ss_pred HHHHHcCCCeEEEEccCcEECCC------------------------------------------------CceEEEeCH
Confidence 11 356899999999988776 557999999
Q ss_pred HHHHHHHHH
Q 006433 561 DIAQFIVAD 569 (645)
Q Consensus 561 dva~~I~~~ 569 (645)
..|+++++.
T Consensus 108 ~~A~~ll~~ 116 (128)
T cd06532 108 KGAKKLLAA 116 (128)
T ss_pred HHHHHHHHh
Confidence 999999996
No 36
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=82.77 E-value=10 Score=36.95 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhh-cCCCCceeeeeeccCC-------ccccc--ccc--cccccCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARK-VREDKSLYIGNMNYYH-------RPLRH--GKW--AVTYEEWPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~-~~~~~~ly~G~v~~~~-------~P~R~--sKw--yVp~eeyp~~~YPpY~~G 553 (645)
...+|++.+|+|.....+.+...+.. ......+.+|...... .+.|. ++. +...... ...+. -+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-d~~~ 158 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLL-GLGIK-DTQC 158 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHc-CCCCc-cccc
Confidence 35699999999999999999888876 3334567777654321 11111 110 0000000 11111 1233
Q ss_pred CeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC---CCcceee
Q 006433 554 PGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS---KPVEYVH 602 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~---~PV~~~h 602 (645)
+..++++.+++.+... ..... ..+|..+-.-+.+.|.. .|+.|.+
T Consensus 159 g~~~~~r~~~~~~~~~---~~~~~-~~~d~el~~r~~~~g~~~~~vpi~~~~ 206 (211)
T cd04188 159 GFKLFTRDAARRLFPR---LHLER-WAFDVELLVLARRLGYPIEEVPVRWVE 206 (211)
T ss_pred CceeEcHHHHHHHHhh---hhccc-eEeeHHHHHHHHHcCCeEEEcCcceec
Confidence 5689999999988653 11122 23688876777777754 3655443
No 37
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=82.70 E-value=30 Score=36.57 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=64.8
Q ss_pred EEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccC-C---ccccc--------ccc-cccccCCCC-----CCCCCC
Q 006433 490 YIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYY-H---RPLRH--------GKW-AVTYEEWPE-----EEYPPY 550 (645)
Q Consensus 490 yvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~-~---~P~R~--------sKw-yVp~eeyp~-----~~YPpY 550 (645)
|++-.++|+.+..+.|.+.++..... ...+.|..... . .+.+. ..| +.+..+.+. ...-.+
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVAS 166 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhh
Confidence 99999999999999999988776543 23333433321 0 01110 122 222222221 112225
Q ss_pred CCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 551 ANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 551 ~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
++|++.++++++.+++--- ..--....||+-.+.=+.++|..
T Consensus 167 ~~G~~~li~~~~~~~vG~~---de~~F~y~eD~D~~~R~~~~G~~ 208 (305)
T COG1216 167 LSGACLLIRREAFEKVGGF---DERFFIYYEDVDLCLRARKAGYK 208 (305)
T ss_pred cceeeeEEcHHHHHHhCCC---CcccceeehHHHHHHHHHHcCCe
Confidence 7999999999999998651 12224567999999999999964
No 38
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=81.79 E-value=7.9 Score=36.67 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcc-ccc--ccccccccCCCCCCCCCCCCCCeeEeCHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRP-LRH--GKWAVTYEEWPEEEYPPYANGPGYIVSSDI 562 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P-~R~--sKwyVp~eeyp~~~YPpY~~G~GYILS~dv 562 (645)
...+|++.+|+|.....+.|...+........+.+|.......+ .+. ++.+...........-+...|+.+++++++
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 158 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKV 158 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHH
Confidence 35699999999999998888777776544456666765432211 110 111110001101122345678889999999
Q ss_pred HHHHHH
Q 006433 563 AQFIVA 568 (645)
Q Consensus 563 a~~I~~ 568 (645)
++.+..
T Consensus 159 ~~~i~~ 164 (181)
T cd04187 159 VDALLL 164 (181)
T ss_pred HHHHHh
Confidence 998865
No 39
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=80.52 E-value=2.6 Score=44.19 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=34.5
Q ss_pred CCCeeEeCHHHHHHHHHHhhcCc--cCCCCCChHHHHHHHHHcCCC
Q 006433 552 NGPGYIVSSDIAQFIVADFEKHK--LRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 552 ~G~GYILS~dva~~I~~~~~s~~--~~~f~lEDV~iGi~l~klgi~ 595 (645)
+|+|+.||..+|+.|.+....+. .+.+.--|-.+..|+.++|+.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~ 57 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVP 57 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Confidence 89999999999999998754322 244444799999999999863
No 40
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=80.38 E-value=8.2 Score=34.66 Aligned_cols=82 Identities=11% Similarity=-0.034 Sum_probs=45.9
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCC--CceeeeeeccCCc---cccc---cc---ccccccCC-CCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRED--KSLYIGNMNYYHR---PLRH---GK---WAVTYEEW-PEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~--~~ly~G~v~~~~~---P~R~---sK---wyVp~eey-p~~~YPpY~~G 553 (645)
.+.+|++.+|+|.++..+.|...+...... -.++.|....... .... .+ ++.....+ ....+.+++.|
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSG 156 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCc
Confidence 478999999999999988787774443321 2233333322111 1111 01 11110000 11234567889
Q ss_pred CeeEeCHHHHHHHH
Q 006433 554 PGYIVSSDIAQFIV 567 (645)
Q Consensus 554 ~GYILS~dva~~I~ 567 (645)
.++++++++++.+.
T Consensus 157 ~~~~~~~~~~~~~g 170 (180)
T cd06423 157 AFGAFRREALREVG 170 (180)
T ss_pred hHHHHHHHHHHHhC
Confidence 99999999998764
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=80.34 E-value=10 Score=34.09 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=43.7
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCC-CCceeeeeeccCCccccc--cc-----cccc---ccCCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRE-DKSLYIGNMNYYHRPLRH--GK-----WAVT---YEEWPEEEYPPYANGP 554 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~-~~~ly~G~v~~~~~P~R~--sK-----wyVp---~eeyp~~~YPpY~~G~ 554 (645)
...+|++.+|||.++..+.|...+..... ...+.+|.........+. .. +... ........--+++.|+
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGS 156 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSS
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCccccccc
Confidence 35679999999999998766666655443 234555554422111110 00 0000 0011112334477889
Q ss_pred eeEeCHHHHHHH
Q 006433 555 GYIVSSDIAQFI 566 (645)
Q Consensus 555 GYILS~dva~~I 566 (645)
+.++++++.+++
T Consensus 157 ~~~~rr~~~~~~ 168 (169)
T PF00535_consen 157 CALFRRSVFEEI 168 (169)
T ss_dssp CEEEEEHHHHHC
T ss_pred EEEEEHHHHHhh
Confidence 999999998865
No 42
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=79.22 E-value=16 Score=39.99 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=60.4
Q ss_pred ccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeeccCCccccccccccc------ccCCCC------CCCCCCCCCC
Q 006433 488 ANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNYYHRPLRHGKWAVT------YEEWPE------EEYPPYANGP 554 (645)
Q Consensus 488 akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~~~~P~R~sKwyVp------~eeyp~------~~YPpY~~G~ 554 (645)
.+|++.+|+|+.+..+.|...+......+ .+..|......... ..+..++ ...||. .....++.|+
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESF-WEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGG 212 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCH-HHHHHHHHHHHHHHHhcchhhhcCCCccceeecce
Confidence 78999999999999988888876654322 33322221100000 0010000 001110 1123457899
Q ss_pred eeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 555 GYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 555 GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.++++++.+.+--. .. ......||+.++.-+.+.|..
T Consensus 213 ~~lirr~~~~~vGGf-~~--~~~~~~ED~~L~~r~~~~G~~ 250 (384)
T TIGR03469 213 CILIRREALERIGGI-AA--IRGALIDDCTLAAAVKRSGGR 250 (384)
T ss_pred EEEEEHHHHHHcCCH-HH--HhhCcccHHHHHHHHHHcCCc
Confidence 999999999988332 11 112347999999999998853
No 43
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=75.83 E-value=52 Score=33.12 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=60.0
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCC-CCceeeeeeccCC--c----cccc--cc---ccccccCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRE-DKSLYIGNMNYYH--R----PLRH--GK---WAVTYEEWPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~-~~~ly~G~v~~~~--~----P~R~--sK---wyVp~eeyp~~~YPpY~~G 553 (645)
.+.+|++.+|+|..+..+.|...+..... ...+..|...... . ..|. ++ +.... ... ... +.+.|
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~-~~~-~d~~g 168 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT-LLW-PGV-SDLTG 168 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH-HhC-CCC-CcCCC
Confidence 36789999999999999998888766532 3456667643211 0 1121 11 11111 111 111 23577
Q ss_pred CeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 554 PGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+..++++++++.|.... .... ..+|+.+...+...|..
T Consensus 169 ~~~~~rr~~~~~i~~~~---~~~~-~~~~~el~~~~~~~g~~ 206 (243)
T PLN02726 169 SFRLYKRSALEDLVSSV---VSKG-YVFQMEIIVRASRKGYR 206 (243)
T ss_pred cccceeHHHHHHHHhhc---cCCC-cEEehHHHHHHHHcCCc
Confidence 88899999999997531 1112 23466676666666754
No 44
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=74.45 E-value=29 Score=36.18 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=71.4
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCccc--cc--ccc-------cc-----cccCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPL--RH--GKW-------AV-----TYEEWPEEEYPP 549 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~--R~--sKw-------yV-----p~eeyp~~~YPp 549 (645)
.+.+|++-.|-|+.+..+.|...+.....+.. +|-+....... .+ +++ |. ....|... -.
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 169 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGG--EG 169 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc
Confidence 35689999999999999999998876532111 23332111100 00 111 00 01112221 12
Q ss_pred CCCCCeeEeCHHHHHHHHHHhh---cCcc-CCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHH
Q 006433 550 YANGPGYIVSSDIAQFIVADFE---KHKL-RLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQ 625 (645)
Q Consensus 550 Y~~G~GYILS~dva~~I~~~~~---s~~~-~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~e 625 (645)
+|.|...++.++++..+...-. .... ...-.||..+|+.+...|.. +.|.. ..+......|..
T Consensus 170 ~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r--i~~~~-----------~~~~~~~~~p~~ 236 (254)
T cd04191 170 NYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE--VRLAP-----------DLEGSYEECPPT 236 (254)
T ss_pred CccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE--EEEcc-----------CCcceEeECCCC
Confidence 5679999999999887532100 0011 12346999999999988865 22221 112223455677
Q ss_pred HHHHHHH
Q 006433 626 MVCMWDK 632 (645)
Q Consensus 626 M~~lW~~ 632 (645)
+..+|+.
T Consensus 237 ~~~~~~q 243 (254)
T cd04191 237 LIDFLKR 243 (254)
T ss_pred HHHHHHH
Confidence 7776655
No 45
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=73.66 E-value=95 Score=30.44 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=58.2
Q ss_pred CccEEEEecCCeeeeHHHHHHHH--hh-cCCC-CceeeeeeccC-Cccc-----ccccccccccCCCCC--CCCCCCCCC
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEA--RK-VRED-KSLYIGNMNYY-HRPL-----RHGKWAVTYEEWPEE--EYPPYANGP 554 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L--~~-~~~~-~~ly~G~v~~~-~~P~-----R~sKwyVp~eeyp~~--~YPpY~~G~ 554 (645)
+++|++..|+|+.+..+.|...+ .. .... .-..+|..... .... +...|.......... .-..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 56999999999999988888875 22 2211 22223332221 1110 001111100011111 112355678
Q ss_pred eeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 555 GYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 555 GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
|.++++++.+.+--. . .. -....||+.+.+-+.+.|..
T Consensus 155 ~~~~rr~~~~~~ggf-d-~~-~~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 155 GSLISLEALEKVGGF-D-ED-LFIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred ceEEcHHHHHHhCCC-C-HH-HcCccchHHHHHHHHHcCCc
Confidence 889999999887431 1 11 12346899999998888865
No 46
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.40 E-value=24 Score=33.94 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=54.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCC-CCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHH
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVRE-DKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQ 564 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~-~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~ 564 (645)
.+.+|++..|||..+..+.|...+..... .-.++.|..... ++ .++|.++.+++++
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----~~------------------~~~~~~~~~~~~~ 134 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP-----DG------------------SFVGVLISRRVVE 134 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC-----CC------------------ceEEEEEeHHHHH
Confidence 45789999999999998888777766542 122333332210 01 3457899999998
Q ss_pred HHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 565 FIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 565 ~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
.+--. .... ....||+.+..-+.+.|..
T Consensus 135 ~~g~~--~~~~-~~~~eD~~~~~r~~~~G~~ 162 (202)
T cd04185 135 KIGLP--DKEF-FIWGDDTEYTLRASKAGPG 162 (202)
T ss_pred HhCCC--Chhh-hccchHHHHHHHHHHcCCc
Confidence 76321 1111 2345999999999988864
No 47
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.26 E-value=1.1e+02 Score=33.21 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=109.6
Q ss_pred ceEEEEEECCCCCH-HHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcC-cEEEE------------
Q 006433 418 VELFIGILSAGNHF-AERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFG-DIVIV------------ 483 (645)
Q Consensus 418 v~LLIlV~Sap~nf-~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~yg-DIIq~------------ 483 (645)
+.+-|+|++--.+. .-.+.++..=.++- .+..+ .++....+++.-+.+.+-..+++ ++...
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dy----p~~ev-ivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~a 128 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDY----PRYEV-IVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGA 128 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCC----CCceE-EEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHH
Confidence 67778888866555 33344444333321 11233 44444444555555666666664 44331
Q ss_pred -----ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCCce-eeeeeccCCcc-----c-c--cccc-cccccC--CC-CC
Q 006433 484 -----RTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSL-YIGNMNYYHRP-----L-R--HGKW-AVTYEE--WP-EE 545 (645)
Q Consensus 484 -----~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~l-y~G~v~~~~~P-----~-R--~sKw-yVp~ee--yp-~~ 545 (645)
+..+.++|+..|-|+.+..+.|...+......... +.|.......+ . | .-.+ ...... +. ..
T Consensus 129 l~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
T COG1215 129 LNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKG 208 (439)
T ss_pred HHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhc
Confidence 12358999999999999999999999887643333 44443211111 0 0 0000 000000 01 12
Q ss_pred CCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHH
Q 006433 546 EYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQ 625 (645)
Q Consensus 546 ~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~e 625 (645)
....+|.|++.++.+++++.+... .+..--||..+++.+...|.. +.|.++. .++...|+.
T Consensus 209 g~~~~~~G~~~~~rr~aL~~~g~~-----~~~~i~ED~~lt~~l~~~G~~--~~~~~~~------------~~~~~~p~t 269 (439)
T COG1215 209 GLISFLSGSSSAFRRSALEEVGGW-----LEDTITEDADLTLRLHLRGYR--VVYVPEA------------IVWTEAPET 269 (439)
T ss_pred CCeEEEcceeeeEEHHHHHHhCCC-----CCCceeccHHHHHHHHHCCCe--EEEeecc------------eEeeeCccc
Confidence 357789999999999999988631 234445999999999988865 3333321 234555666
Q ss_pred HHHHHHHh
Q 006433 626 MVCMWDKL 633 (645)
Q Consensus 626 M~~lW~~L 633 (645)
+..+|++-
T Consensus 270 ~~~~~~Qr 277 (439)
T COG1215 270 LKELWRQR 277 (439)
T ss_pred HHHHHHHH
Confidence 66666543
No 48
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=69.67 E-value=40 Score=32.15 Aligned_cols=102 Identities=11% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcC--CCCceeeeeeccCCccccc--cccccccc-----CCCCCCCCCCCCCCee
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVR--EDKSLYIGNMNYYHRPLRH--GKWAVTYE-----EWPEEEYPPYANGPGY 556 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~--~~~~ly~G~v~~~~~P~R~--sKwyVp~e-----eyp~~~YPpY~~G~GY 556 (645)
.+.+|++..|+|.++..+.|...+.... +.-.++.|.........+. .+. .+.. .+....- + ..+++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~ 155 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRRS-P-FNHPTV 155 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccCC-C-CCChHH
Confidence 3679999999999999988888777643 2234454544321000000 000 0100 0000011 1 245667
Q ss_pred EeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 557 IVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 557 ILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
++.+++.+.+... -.....||..+...+...|..
T Consensus 156 ~~rr~~~~~~g~~-----~~~~~~eD~~~~~r~~~~g~~ 189 (201)
T cd04195 156 MFRKSKVLAVGGY-----QDLPLVEDYALWARMLANGAR 189 (201)
T ss_pred hhhHHHHHHcCCc-----CCCCCchHHHHHHHHHHcCCc
Confidence 7777777655321 122567999999888877753
No 49
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=66.48 E-value=25 Score=32.91 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=47.8
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhh-cCCCCceeeeeeccCCc-----cccc-cccccc--ccCCCCCCCCCCCCCCee
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARK-VREDKSLYIGNMNYYHR-----PLRH-GKWAVT--YEEWPEEEYPPYANGPGY 556 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~-~~~~~~ly~G~v~~~~~-----P~R~-sKwyVp--~eeyp~~~YPpY~~G~GY 556 (645)
...+|++..|+|..+..+.|.+.+.. ......+.+|....... ..+. ..+... .... ...-.....|+.+
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLL-LGVRISDTQSGFR 156 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHH-cCCCCcCCCCcee
Confidence 34589999999999999988888876 33345666676443211 1111 111000 0000 1111234567778
Q ss_pred EeCHHHHHHHH
Q 006433 557 IVSSDIAQFIV 567 (645)
Q Consensus 557 ILS~dva~~I~ 567 (645)
++++++++.+.
T Consensus 157 ~~~r~~~~~i~ 167 (185)
T cd04179 157 LFRREVLEALL 167 (185)
T ss_pred eeHHHHHHHHH
Confidence 99999999985
No 50
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=66.41 E-value=1e+02 Score=32.14 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHcCcE-EEE------------------ecCCccEEEEecCCeeeeHHHHHHHHh---hcCC-CCceeee
Q 006433 465 EVNLDLKKEAEYFGDI-VIV------------------RTVAANYIMKCDDDTFIRVDAVMKEAR---KVRE-DKSLYIG 521 (645)
Q Consensus 465 ~~~~~L~~Eae~ygDI-Iq~------------------~c~~akyvmKvDDDtFVnvd~Ll~~L~---~~~~-~~~ly~G 521 (645)
+....|.+-.+.++-+ ++. ...+.+|++.+|.|+++..+.+.+.+. .... ...++++
T Consensus 47 ~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~ 126 (281)
T PF10111_consen 47 EFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVY 126 (281)
T ss_pred hHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 3446666667766766 322 124789999999999999999998888 4432 2334443
Q ss_pred eeccCCccccc-----ccccccccCC------CCCCCC-CCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHH
Q 006433 522 NMNYYHRPLRH-----GKWAVTYEEW------PEEEYP-PYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWV 589 (645)
Q Consensus 522 ~v~~~~~P~R~-----sKwyVp~eey------p~~~YP-pY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l 589 (645)
-+.....+.-. .+........ ....+. ....|++.+++++.-..|.-. .........||.-++.=+
T Consensus 127 p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf--DE~f~G~G~ED~D~~~RL 204 (281)
T PF10111_consen 127 PCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF--DERFRGWGYEDIDFGYRL 204 (281)
T ss_pred eeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC--CccccCCCcchHHHHHHH
Confidence 33322222110 1100100000 011111 233558999999998888542 234445678999999888
Q ss_pred HHcCCC
Q 006433 590 EKFNNS 595 (645)
Q Consensus 590 ~klgi~ 595 (645)
.+.|..
T Consensus 205 ~~~~~~ 210 (281)
T PF10111_consen 205 KKAGYK 210 (281)
T ss_pred HHcCCc
Confidence 888765
No 51
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=66.25 E-value=72 Score=31.90 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=60.8
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCC-Cc-eeee-eeccCCcccc-cccccc-cc--------cCCCCCCCCCCCCC
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVRED-KS-LYIG-NMNYYHRPLR-HGKWAV-TY--------EEWPEEEYPPYANG 553 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~-ly~G-~v~~~~~P~R-~sKwyV-p~--------eeyp~~~YPpY~~G 553 (645)
+.+|++.+|+|+.+..+.|.+.+...... .. .++| .+.....+.. -.+++. .. ........+..++|
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG 163 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 56999999999999999998888765422 22 2322 2211111100 011100 00 00011223445788
Q ss_pred CeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 554 PGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
++.++++++.+.+.-. . +....||..+++-+.+.|..
T Consensus 164 ~~~~~rr~~~~~vgg~--~---~~~~~eD~~l~~rl~~~G~r 200 (241)
T cd06427 164 TSNHFRTDVLRELGGW--D---PFNVTEDADLGLRLARAGYR 200 (241)
T ss_pred chHHhhHHHHHHcCCC--C---cccchhhHHHHHHHHHCCce
Confidence 9999999999987442 1 12346999999888877764
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=65.38 E-value=37 Score=32.98 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=47.4
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhh-cCCCCceeeeeeccCCccccc-----------ccccccccCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARK-VREDKSLYIGNMNYYHRPLRH-----------GKWAVTYEEWPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~-~~~~~~ly~G~v~~~~~P~R~-----------sKwyVp~eeyp~~~YPpY~~G 553 (645)
...+|++.+|+|..+..+.|...+.. ..+...+..|........... ..++... + ...-.+.+.|
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 153 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARL--L-LGRKVSDPTS 153 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHH--H-cCCCCCCCCC
Confidence 34589999999999999988888876 333345666654322111100 0111100 0 0111235678
Q ss_pred CeeEeCHHHHHHHH
Q 006433 554 PGYIVSSDIAQFIV 567 (645)
Q Consensus 554 ~GYILS~dva~~I~ 567 (645)
++.++++++++.+.
T Consensus 154 ~~~~~~r~~~~~ig 167 (224)
T cd06442 154 GFRAYRREVLEKLI 167 (224)
T ss_pred ccchhhHHHHHHHh
Confidence 88899999999987
No 53
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=65.16 E-value=1.3e+02 Score=29.73 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCC-ceeeeeeccCC---ccc-ccc----cccccccC---CCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDK-SLYIGNMNYYH---RPL-RHG----KWAVTYEE---WPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~-~ly~G~v~~~~---~P~-R~s----KwyVp~ee---yp~~~YPpY~~G 553 (645)
.+.+|++.+|.|+.+..+.|...+......+ ....|.+.... ..+ +.. .++...+. +....+ ..+.|
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g 164 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLF-FNFNG 164 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCe-EEecc
Confidence 3689999999999999999888554443222 12223221100 010 000 00000000 011111 12356
Q ss_pred CeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEEEccCHHHHHHHHHHh
Q 006433 554 PGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTAHYQSPRQMVCMWDKL 633 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~H~~sP~eM~~lW~~L 633 (645)
++-++.+++.+.+.-. . .....||+.++.-+...|.. +.|.. ...+|...|..+..+|++-
T Consensus 165 ~~~~~rr~~~~~vgg~-~----~~~~~ED~~l~~rl~~~G~~--~~~~~------------~~~v~~~~~~~~~~~~~q~ 225 (232)
T cd06437 165 TAGVWRKECIEDAGGW-N----HDTLTEDLDLSYRAQLKGWK--FVYLD------------DVVVPAELPASMSAYRSQQ 225 (232)
T ss_pred chhhhhHHHHHHhCCC-C----CCcchhhHHHHHHHHHCCCe--EEEec------------cceeeeeCCcCHHHHHHHH
Confidence 6667888888776321 1 12347999999888877754 21111 2334555566666666554
Q ss_pred h
Q 006433 634 Q 634 (645)
Q Consensus 634 ~ 634 (645)
.
T Consensus 226 ~ 226 (232)
T cd06437 226 H 226 (232)
T ss_pred H
Confidence 3
No 54
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=61.00 E-value=1.7e+02 Score=32.81 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=83.4
Q ss_pred CceEEEEEECCCCCHHHHHHHHHHhccCcccCCCcEEEEEEEeecCChhhhHHHHHHHHHcCcEEEE-------------
Q 006433 417 HVELFIGILSAGNHFAERMAVRKSWMQHKLITSSKVVARFFVALHGRKEVNLDLKKEAEYFGDIVIV------------- 483 (645)
Q Consensus 417 ~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~ygDIIq~------------- 483 (645)
.+.+-|+|++--+...-++.|+.--.+.- +...+. +.++-...+++..+.+++-.+.+..+...
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~y--p~~~~e-IiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN 124 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTY--PIELID-IILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALN 124 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCC--CCCCeE-EEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHH
Confidence 34566666664443333444444332221 112222 34443333333333344334455555332
Q ss_pred ---ecCCccEEEEecCCeeeeHHHHHHHHhhcCCCC--ceeeeeeccCCccc-ccc---cccccc---cCCC--------
Q 006433 484 ---RTVAANYIMKCDDDTFIRVDAVMKEARKVREDK--SLYIGNMNYYHRPL-RHG---KWAVTY---EEWP-------- 543 (645)
Q Consensus 484 ---~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~--~ly~G~v~~~~~P~-R~s---KwyVp~---eeyp-------- 543 (645)
...+.+|++..|+|..+..+.|.+.+.....+. ....|.+....... +.. .+.+.. -+|.
T Consensus 125 ~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~ 204 (439)
T TIGR03111 125 AAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRN 204 (439)
T ss_pred HHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhhH
Confidence 235679999999999999999988886653222 22334443211100 000 011111 0110
Q ss_pred ---CCCCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHH
Q 006433 544 ---EEEYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEK 591 (645)
Q Consensus 544 ---~~~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~k 591 (645)
....+..++|++.++.+++++++.-. . ...-.||..++.-+.+
T Consensus 205 ~~s~~~~~~~~sGa~~~~Rr~~l~~vggf-~----~~~i~ED~~l~~rl~~ 250 (439)
T TIGR03111 205 FESQVNSLFTLSGAFSAFRRETILKTQLY-N----SETVGEDTDMTFQIRE 250 (439)
T ss_pred HHHhcCCeEEEccHHHhhhHHHHHHhCCC-C----CCCcCccHHHHHHHHH
Confidence 01123346888889999988865321 1 1123799999876654
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.27 E-value=1.1e+02 Score=29.58 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=56.6
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeecc----CCcccc--cccccccccCCCCCCCCCCCCCCeeEeCH
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNY----YHRPLR--HGKWAVTYEEWPEEEYPPYANGPGYIVSS 560 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~----~~~P~R--~sKwyVp~eeyp~~~YPpY~~G~GYILS~ 560 (645)
+.+|++.+|+|..+..+.|.+.+....... ..+|.... .....+ ..++.... .....+| ++.|.++++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~r~ 145 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS----RLFGLPY-GDQGLFIRR 145 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee----cccCCCc-CCceEEEEH
Confidence 479999999999999888887665554332 23333221 111111 01111110 0111122 456889999
Q ss_pred HHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 561 DIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 561 dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
++.+.+... . ..+..||.-++.-+.+.|..
T Consensus 146 ~~~~~~G~f-d----~~~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 146 ELFEELGGF-P----ELPLMEDVELVRRLRRRGRP 175 (221)
T ss_pred HHHHHhCCC-C----ccccccHHHHHHHHHhCCCE
Confidence 998877432 1 12277999998888888754
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=56.33 E-value=73 Score=32.75 Aligned_cols=106 Identities=8% Similarity=0.125 Sum_probs=57.0
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCC--CceeeeeeccCCc-----c-cccccccccccC--CCCC-CCCCCCCCCe
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVRED--KSLYIGNMNYYHR-----P-LRHGKWAVTYEE--WPEE-EYPPYANGPG 555 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~--~~ly~G~v~~~~~-----P-~R~sKwyVp~ee--yp~~-~YPpY~~G~G 555 (645)
+++|++..|||+.+..+.|...+...... .-.++|....... | .+...+..+... .+.. .-..++.++|
T Consensus 73 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 152 (281)
T TIGR01556 73 GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSG 152 (281)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCc
Confidence 57999999999999988777776654322 2233333221100 0 011111111000 0011 1113455677
Q ss_pred eEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 556 YIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 556 YILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
.++++++++.+--- . ..+ .+..||+-+..=+.+.|..
T Consensus 153 ~li~~~~~~~iG~f-d-e~~-fi~~~D~e~~~R~~~~G~~ 189 (281)
T TIGR01556 153 CLITREVYQRLGMM-D-EEL-FIDHVDTEWSLRAQNYGIP 189 (281)
T ss_pred ceeeHHHHHHhCCc-c-Hhh-cccchHHHHHHHHHHCCCE
Confidence 78999999987431 1 111 2345899887777777754
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=53.41 E-value=1.5e+02 Score=25.60 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=47.0
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCC-CceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHH
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVRED-KSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAQF 565 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~-~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva~~ 565 (645)
+.+|++.+|+|..+..+.+...+...... +..+++.. +++++++++.+.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------~~~~~~~~~~~~ 126 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------GNLLFRRELLEE 126 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------chheeeHHHHHH
Confidence 68999999999999998888764332211 11111110 789999999988
Q ss_pred HHHHhhcCccCCCCCChHHHHHHHHHcC
Q 006433 566 IVADFEKHKLRLFKMEDVSMGMWVEKFN 593 (645)
Q Consensus 566 I~~~~~s~~~~~f~lEDV~iGi~l~klg 593 (645)
+... ........||..+...+.+.|
T Consensus 127 ~~~~---~~~~~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 127 IGGF---DEALLSGEEDDDFLLRLLRGG 151 (156)
T ss_pred hCCc---chHhcCCcchHHHHHHHHhhc
Confidence 7542 111112268888877666654
No 58
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=50.71 E-value=2.6e+02 Score=33.68 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=59.5
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCCce-eeeee--ccCCccc-cc-cc-ccccccC-------CCC-C-CCCCCC
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDKSL-YIGNM--NYYHRPL-RH-GK-WAVTYEE-------WPE-E-EYPPYA 551 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~l-y~G~v--~~~~~P~-R~-sK-wyVp~ee-------yp~-~-~YPpY~ 551 (645)
+.+|++..|.|+.+..+.|...+.....+..+ +++.. ..+..|. |+ +. ..++.+. .+. + .--+++
T Consensus 228 ~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~ 307 (713)
T TIGR03030 228 DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFF 307 (713)
T ss_pred CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeee
Confidence 57999999999999999888877654222221 22211 1111221 11 00 0011000 000 0 012356
Q ss_pred CCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 552 NGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 552 ~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
.|++.++.+++.+.+--. . ...-.||..+++-+.+.|.+
T Consensus 308 ~Gs~~~iRR~al~~iGGf-~----~~~vtED~~l~~rL~~~G~~ 346 (713)
T TIGR03030 308 CGSAAVLRREALDEIGGI-A----GETVTEDAETALKLHRRGWN 346 (713)
T ss_pred cCceeEEEHHHHHHcCCC-C----CCCcCcHHHHHHHHHHcCCe
Confidence 799999999999977421 1 12236999999999988875
No 59
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=47.82 E-value=56 Score=35.21 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=49.3
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeecc-CCccccc--ccc---cccccCCCCCCCCCCCCCCeeEeC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNY-YHRPLRH--GKW---AVTYEEWPEEEYPPYANGPGYIVS 559 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~-~~~P~R~--sKw---yVp~eeyp~~~YPpY~~G~GYILS 559 (645)
.+.+|++.+|+|.-.+++.+.++++......++..|.... ...+.|. ++. .+. ......++.+.+| --+++
T Consensus 89 A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~--~~~g~~~~d~~~g-fr~~~ 165 (325)
T PRK10714 89 VTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQ--RTTGKAMGDYGCM-LRAYR 165 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHH--HHcCCCCCCCCcC-eEEEc
Confidence 4689999999999999999999988765433455444322 2234443 221 111 1122334444333 24899
Q ss_pred HHHHHHHHH
Q 006433 560 SDIAQFIVA 568 (645)
Q Consensus 560 ~dva~~I~~ 568 (645)
+++++.+..
T Consensus 166 r~~~~~l~~ 174 (325)
T PRK10714 166 RHIVDAMLH 174 (325)
T ss_pred HHHHHHHHH
Confidence 999999865
No 60
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=47.59 E-value=19 Score=34.11 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=20.4
Q ss_pred hhhcccccccccCCCCCCCCCeEEEEEEEcCC---------ceEEEeCCe
Q 006433 314 RLIGRTKKVTVEWPYPFSEGNLFVLTIAAGLE---------GYHITVDGR 354 (645)
Q Consensus 314 ~~~~~~~~~~~~~~fPF~~g~~F~lti~~g~e---------g~~v~VnG~ 354 (645)
||+||.. .|+.|.|||.+... -++|+|||-
T Consensus 88 RFvGRSG-----------RGKsFtltItv~t~PpqvAty~~AIKVTVDGP 126 (135)
T PF00853_consen 88 RFVGRSG-----------RGKSFTLTITVFTNPPQVATYHRAIKVTVDGP 126 (135)
T ss_dssp EECST-T-----------TTSEEEEEEEE-SSS-EEEEECCEEEEESS-S
T ss_pred ccccccC-----------CccceEEEEEEeCCCchHHhheeeEEEEecCC
Confidence 7788876 49999999988755 455666763
No 61
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=39.02 E-value=5.3e+02 Score=27.86 Aligned_cols=179 Identities=16% Similarity=0.073 Sum_probs=89.9
Q ss_pred CCCceEEEEEECCCCCHHHHHHHHHHhccCcc----cCCCcEEEEEEEeecCChhhhHHHHHHHHHc----CcEEEE---
Q 006433 415 DGHVELFIGILSAGNHFAERMAVRKSWMQHKL----ITSSKVVARFFVALHGRKEVNLDLKKEAEYF----GDIVIV--- 483 (645)
Q Consensus 415 ~~~v~LLIlV~Sap~nf~rR~AIR~TWg~~~~----~~~~~v~~~F~vG~~~~~~~~~~L~~Eae~y----gDIIq~--- 483 (645)
...+.|-|+|+.--....-...++++...-.. .......++++-..+.+.+. +.+.+-.+.+ .++...
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~-~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTL-KVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchH-HHHHHHHHhcCCCCCcEEEEEcC
Confidence 44566777776654433333556666543210 01123444444444443332 2233323333 123333
Q ss_pred -------------ecCCccEEEEecCCeeeeHHHHHHHHhhcC----CCCceeeeeeccC--C------ccccc--cc--
Q 006433 484 -------------RTVAANYIMKCDDDTFIRVDAVMKEARKVR----EDKSLYIGNMNYY--H------RPLRH--GK-- 534 (645)
Q Consensus 484 -------------~c~~akyvmKvDDDtFVnvd~Ll~~L~~~~----~~~~ly~G~v~~~--~------~P~R~--sK-- 534 (645)
.+...+|++.+|.|....++.+...+.... +.-.+.+|..... . ...|. ++
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~ 225 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGF 225 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHH
Confidence 234679999999999999888666655432 2345777875421 1 11222 11
Q ss_pred ccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC---CCcce
Q 006433 535 WAVTYEEWPEEEYPPYANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS---KPVEY 600 (645)
Q Consensus 535 wyVp~eeyp~~~YPpY~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~---~PV~~ 600 (645)
..+-. ..-...++.... +.-++++++++.|+.. .....+. -|+.+-+.+.+.|.. .|+.+
T Consensus 226 ~~l~~-~~~~~~i~D~~~-Gfk~~~r~~~~~i~~~---~~~~~~~-fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 226 HFIVN-TICGTNLKDTQC-GFKLFTRETARIIFPS---LHLERWA-FDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HHHHH-HHcCCCcccCCC-CeEEEeHHHHHHHhhh---ccccCcc-chHHHHHHHHHcCCCEEEEceee
Confidence 00100 111223333322 3358899999988653 2222222 467777777777764 46643
No 62
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=38.73 E-value=6.9e+02 Score=29.06 Aligned_cols=140 Identities=11% Similarity=-0.054 Sum_probs=73.2
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCccccc--ccccccccCCCC-----------CCCCCCCCC
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTYEEWPE-----------EEYPPYANG 553 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~--sKwyVp~eeyp~-----------~~YPpY~~G 553 (645)
++++++..|-|..+..+.|..+....+ ...+.-..+.....+... +..|.- +|.+ -.-+..+.|
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~~~-~~~~VQ~pv~~~~~~~~~~~ag~y~~--ef~~~~~~~l~~r~~LG~~~~~~G 234 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYLLP-RHDFVQLPVFSLPRDWGEWVAGTYMD--EFAESHLKDLPVREALGGLIPSAG 234 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhhcC-CCCEEecceeccCCchhHHHHHHHHH--HHHHHHHHHHHHHHhcCCccccCC
Confidence 348999999999999999876533322 222211111111111110 111111 1110 012345789
Q ss_pred CeeEeCHHHHHHHHHHhhcC-ccCCCCCChHHHHHHHHHcCCCCCcceeeccccc----ccCccccEEEEEccCHHHHHH
Q 006433 554 PGYIVSSDIAQFIVADFEKH-KLRLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFC----QFGCIEDYYTAHYQSPRQMVC 628 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s~-~~~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc----~~~C~~~~it~H~~sP~eM~~ 628 (645)
.|+.+++++++.|....... .-...--||.-+|+-+...|.. +.|.++.-.. ... ....+++...-|..+..
T Consensus 235 tg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r--v~y~p~ai~~~~~~~~~-~~~~v~t~e~~P~t~~a 311 (504)
T PRK14716 235 VGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR--QIFVRVRADDTTDRPDR-RGEPIATREFFPDTFKA 311 (504)
T ss_pred eeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE--EEEeccccccccccccc-ccccccccccCccCHHH
Confidence 99999999999986531000 1122345999999999999975 3333321000 000 12234445556666666
Q ss_pred HHHH
Q 006433 629 MWDK 632 (645)
Q Consensus 629 lW~~ 632 (645)
+|++
T Consensus 312 ~~rQ 315 (504)
T PRK14716 312 AVRQ 315 (504)
T ss_pred HHHH
Confidence 6654
No 63
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=37.09 E-value=40 Score=34.22 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=74.9
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhcC--CCCceeeeeeccCCc---cc-cc-c-ccccc----ccCCCCCCCCCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKVR--EDKSLYIGNMNYYHR---PL-RH-G-KWAVT----YEEWPEEEYPPYANG 553 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~~--~~~~ly~G~v~~~~~---P~-R~-s-KwyVp----~eeyp~~~YPpY~~G 553 (645)
.+.+|++.+|.|+.+..+.|...+.... +.-....|.+..... ++ +. . -|... ......-.+..++.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 5789999999999999999888776653 211233454432111 10 00 0 01000 000011235667899
Q ss_pred CeeEeCHHHHHHHHHHhhc--------Ccc-------CCCCCChHHHHHHHHHcCCCCCcceeecccccccCccccEEEE
Q 006433 554 PGYIVSSDIAQFIVADFEK--------HKL-------RLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCIEDYYTA 618 (645)
Q Consensus 554 ~GYILS~dva~~I~~~~~s--------~~~-------~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~~~~it~ 618 (645)
+++++.+++++.+...... ..+ ...-.||..++..+.+.|.. +.|. ++. -..+
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~--~~~~----~~~------~a~~ 219 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK--RKYL----YVP------GAVA 219 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc--cEEE----Eec------ccEE
Confidence 9999999988876321000 000 11235999998888777754 2221 121 1233
Q ss_pred EccCHHHHHHHHHHhh
Q 006433 619 HYQSPRQMVCMWDKLQ 634 (645)
Q Consensus 619 H~~sP~eM~~lW~~L~ 634 (645)
+...|..+..+|++-.
T Consensus 220 ~~~~p~s~~~~~~QR~ 235 (244)
T cd04190 220 ETDVPETFVELLSQRR 235 (244)
T ss_pred EEECCCCHHHHHHHhH
Confidence 5666666777776543
No 64
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=34.63 E-value=3e+02 Score=33.25 Aligned_cols=176 Identities=10% Similarity=0.018 Sum_probs=92.0
Q ss_pred CCCceEEEEEECCCCCHHH-HHHHHHHhccCcccC-CCcEEEEEEEeecCChhhhH----HHHHHHHHcC---cEEEE--
Q 006433 415 DGHVELFIGILSAGNHFAE-RMAVRKSWMQHKLIT-SSKVVARFFVALHGRKEVNL----DLKKEAEYFG---DIVIV-- 483 (645)
Q Consensus 415 ~~~v~LLIlV~Sap~nf~r-R~AIR~TWg~~~~~~-~~~v~~~F~vG~~~~~~~~~----~L~~Eae~yg---DIIq~-- 483 (645)
.....+-|+|++.-...++ +..|+.++.+-.... ..+.. +|++....+++... .+.+-.++|+ .|...
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e-~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFD-FFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 4456677888887765432 356777775422111 12333 37787666554321 1222233343 34433
Q ss_pred -------------ec----CCccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccc-c---ccc-------
Q 006433 484 -------------RT----VAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLR-H---GKW------- 535 (645)
Q Consensus 484 -------------~c----~~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R-~---sKw------- 535 (645)
.| .+++|++-.|-|+.+..+.|.+.+.....+.. +|-+.....+.. + .++
T Consensus 200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf~~~~ 277 (691)
T PRK05454 200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQFATRV 277 (691)
T ss_pred CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHHHHHH
Confidence 12 46799999999999999999998876532112 354443222211 1 111
Q ss_pred ccc-----ccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhh-cCcc---CCCCCChHHHHHHHHHcCCC
Q 006433 536 AVT-----YEEWPEEEYPPYANGPGYIVSSDIAQFIVADFE-KHKL---RLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 536 yVp-----~eeyp~~~YPpY~~G~GYILS~dva~~I~~~~~-s~~~---~~f~lEDV~iGi~l~klgi~ 595 (645)
|-+ ...|-.. -- ...|...|+.+++...+...-. .... ...--||...|..+.+.|..
T Consensus 278 y~~~~~~G~~~w~~~-~g-~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr 344 (691)
T PRK05454 278 YGPLFAAGLAWWQGG-EG-NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG 344 (691)
T ss_pred HHHHHHhhhhhhccC-cc-ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE
Confidence 100 0011110 11 1257778888887765421000 0011 12334899999999999875
No 65
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=31.80 E-value=38 Score=37.49 Aligned_cols=29 Identities=41% Similarity=0.689 Sum_probs=21.2
Q ss_pred hhhcccccccccCCCCCCCCCeEEEEEEEcC---------CceEEEeCC
Q 006433 314 RLIGRTKKVTVEWPYPFSEGNLFVLTIAAGL---------EGYHITVDG 353 (645)
Q Consensus 314 ~~~~~~~~~~~~~~fPF~~g~~F~lti~~g~---------eg~~v~VnG 353 (645)
||.||.. .|+.|+|||.+-. .-++|+|||
T Consensus 185 RFVGRSG-----------RGKsFtLTIti~TnP~qvATy~kaIKVTVDG 222 (475)
T KOG3982|consen 185 RFVGRSG-----------RGKSFTLTITIFTNPPQVATYHKAIKVTVDG 222 (475)
T ss_pred eeecccC-----------CCcceEEEEEEecCCcceeeeeceEEEeccC
Confidence 5668876 6899999998754 345566666
No 66
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=30.01 E-value=4.9e+02 Score=32.37 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=58.8
Q ss_pred CCccEEEEecCCeeeeHHHHHHHHhhc-CCCCceeeeeec--cCCccc-cc-ccc-cccccC---C----CC--CCCCCC
Q 006433 486 VAANYIMKCDDDTFIRVDAVMKEARKV-REDKSLYIGNMN--YYHRPL-RH-GKW-AVTYEE---W----PE--EEYPPY 550 (645)
Q Consensus 486 ~~akyvmKvDDDtFVnvd~Ll~~L~~~-~~~~~ly~G~v~--~~~~P~-R~-sKw-yVp~ee---y----p~--~~YPpY 550 (645)
.+.+|++..|.|+.+..+.|...+... ...+-.+++... .+..|. |+ +.. .++.+. | +. ..--.+
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~ 417 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATF 417 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccc
Confidence 467999999999999988887765432 111211222111 111121 11 100 011000 0 00 001135
Q ss_pred CCCCeeEeCHHHHHHHHHHhhcCccCCCCCChHHHHHHHHHcCCC
Q 006433 551 ANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMWVEKFNNS 595 (645)
Q Consensus 551 ~~G~GYILS~dva~~I~~~~~s~~~~~f~lEDV~iGi~l~klgi~ 595 (645)
+.|+++++.+++++.+--. . . ....||..+++-+.+.|.+
T Consensus 418 ~~Gs~aviRReaLeeVGGf-d-~---~titED~dlslRL~~~Gyr 457 (852)
T PRK11498 418 FCGSCAVIRRKPLDEIGGI-A-V---ETVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred cccceeeeEHHHHHHhcCC-C-C---CccCccHHHHHHHHHcCCE
Confidence 7889999999999988432 1 1 1236999999999998865
No 67
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.26 E-value=85 Score=36.76 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=61.7
Q ss_pred CccEEEEecCCeeeeHHHHHHHHhhcCCCCceeeeeeccCCcccccccccccccCCCCCCCCCCCCCCeeEeCHHHH-HH
Q 006433 487 AANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTYEEWPEEEYPPYANGPGYIVSSDIA-QF 565 (645)
Q Consensus 487 ~akyvmKvDDDtFVnvd~Ll~~L~~~~~~~~ly~G~v~~~~~P~R~sKwyVp~eeyp~~~YPpY~~G~GYILS~dva-~~ 565 (645)
...=|+-+|||.-++-+.++--.+-....++-++| .|-|.+.|+.|...|-.+ -.|..--..||++.+- .+
T Consensus 724 ETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVG------FPgRyHAwd~p~~sw~YN--SNysCelSMvLTGAAF~HK 795 (907)
T KOG2264|consen 724 ETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVG------FPGRYHAWDGPHDSWFYN--SNYSCELSMVLTGAAFIHK 795 (907)
T ss_pred hheeeeecccchhhhhhheeeeeehhhhccccccc------CCcccccccCCCcceeec--CCcceEEeeeehhhHHHHH
Confidence 34568889999877666555433333222222333 355667888887666421 1133333444544331 11
Q ss_pred HHHHhhc--------Ccc-CCCCCChHHHHHHHHHcCCCCCcceeecccccccCcc
Q 006433 566 IVADFEK--------HKL-RLFKMEDVSMGMWVEKFNNSKPVEYVHSLKFCQFGCI 612 (645)
Q Consensus 566 I~~~~~s--------~~~-~~f~lEDV~iGi~l~klgi~~PV~~~h~~~fc~~~C~ 612 (645)
-|-..-. .++ .+...||+.|-.++..+--+-|++....|.|...+|-
T Consensus 796 yYlylYtY~mPqaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiKvTSRWTfrCPgCp 851 (907)
T KOG2264|consen 796 YYLYLYTYEMPQAIRDHVDEYKNCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGCP 851 (907)
T ss_pred HHHHhhhhhchHHHHHHHHhhcCHHHHHHHHHHHHhccCCCceeeceeEEeCCCCc
Confidence 1110000 001 2456799999999887754436665555666555664
No 68
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=20.58 E-value=2.1e+02 Score=30.70 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=60.8
Q ss_pred cccCCCCCCCCEEEEeCccC-CcccceeeccCCCCCCccccccchhhccccccCCccchhhhhhhhhhhhhhcccccccc
Q 006433 246 PRLKGDWSGRPVIEMNTCYR-MQWGSALRCEGWRSRADEETVDGKVKCEKWIRDDDEHSEESKAAWWLNRLIGRTKKVTV 324 (645)
Q Consensus 246 pRl~gd~~~~~vIv~Nt~~~-~~WG~eeRc~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (645)
|-|. .| ..+.|--+-| .-|--+..-+..++..+ -+||=..|-+ ++.-.
T Consensus 80 PQFG-~~---g~l~qHGFaRn~~W~v~~~p~~lp~~~~-a~Vdl~Lk~~----------~~~~k---------------- 128 (305)
T KOG1594|consen 80 PQFG-NF---GSLPQHGFARNRFWEVENNPPPLPSLGK-ATVDLILKSS----------EDDLK---------------- 128 (305)
T ss_pred eccC-CC---CcccccccccceeeEeccCCCCCCcCCc-eeEEEEecCC----------hhhhh----------------
Confidence 6664 23 2445555554 57887766655453222 2455444433 11111
Q ss_pred cCCCCCCCCCeEEEEEEEcCCceEEE-----eCCeEE-EeecCCCCCCCCCCccceeecccch
Q 006433 325 EWPYPFSEGNLFVLTIAAGLEGYHIT-----VDGRHV-TSFPYRTGFALEDATGLSVNGNVDL 381 (645)
Q Consensus 325 ~~~fPF~~g~~F~lti~~g~eg~~v~-----VnG~h~-~sF~yR~~~~l~~v~~l~i~GDV~l 381 (645)
-|+|-| .|.++|..|.+..+.+ .|++.+ .+|+|++=|...||++++|+|--.+
T Consensus 129 iWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tl 187 (305)
T KOG1594|consen 129 IWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETL 187 (305)
T ss_pred hCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEeccccc
Confidence 166665 4677777775544443 278877 6899998888999999999994443
Done!