BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006437
         (645 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 32.7 bits (73), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML 539
           +   +F++ IV+K   +  ++T   R  +     E A+ +  QMK   + P   +Y   L
Sbjct: 88  RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147

Query: 540 LSFCKE 545
             FC++
Sbjct: 148 FGFCRK 153


>pdb|3B2A|A Chain A, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
 pdb|3B2A|B Chain B, Crystal Structure Of The Archaeal Heat-Like Repeats
           Protein Ton_1937 From Thermococcus Onnurineus Na1
          Length = 265

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 16/89 (17%)

Query: 298 KGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLV 357
           K F++A     A + + +LES    PD +     ID LSK+   +D+  V   + EL + 
Sbjct: 111 KTFLKA-----AKTLVSLLES----PDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVS 161

Query: 358 PDSYT-------FCSLLSTVCLSGRFSLL 379
           PD YT       F ++L++   SG  +L+
Sbjct: 162 PDLYTKVAGFCLFLNMLNSSADSGHLTLI 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,405,181
Number of Sequences: 62578
Number of extensions: 745642
Number of successful extensions: 1903
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1900
Number of HSP's gapped (non-prelim): 4
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)