Query 006437
Match_columns 645
No_of_seqs 690 out of 3637
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 23:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.8E-76 1.5E-80 644.1 56.9 533 51-603 125-658 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.5E-72 7.7E-77 614.8 56.4 542 80-633 48-624 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.3E-70 9.2E-75 584.9 65.4 516 81-603 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-69 5.4E-74 579.0 63.1 507 55-568 378-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.8E-67 6.1E-72 562.4 50.8 512 81-603 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.4E-61 5.2E-66 516.6 49.1 470 116-601 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-32 1.1E-36 305.6 65.8 557 51-624 333-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-32 1.7E-36 303.9 67.0 560 51-629 299-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.8E-22 3.9E-27 227.7 64.8 530 54-600 69-745 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-22 3.6E-27 227.9 63.9 525 55-595 36-699 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-21 3.3E-26 209.8 56.9 217 51-284 47-276 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.9E-18 4.2E-23 186.1 58.0 505 97-628 57-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.7E-20 1E-24 176.0 36.7 432 122-603 51-490 (966)
14 KOG2002 TPR-containing nuclear 99.9 6E-19 1.3E-23 177.4 44.6 566 63-642 146-757 (1018)
15 PRK11788 tetratricopeptide rep 99.9 3E-20 6.6E-25 187.2 35.7 302 265-605 45-356 (389)
16 KOG4626 O-linked N-acetylgluco 99.9 6E-19 1.3E-23 168.5 40.1 440 87-576 52-499 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-17 4.2E-22 175.6 51.1 425 122-596 130-571 (615)
18 PRK11788 tetratricopeptide rep 99.9 3.7E-19 8.1E-24 179.3 35.9 307 227-568 42-354 (389)
19 KOG4422 Uncharacterized conser 99.9 2.8E-17 6.1E-22 150.5 42.0 433 82-562 115-591 (625)
20 KOG2002 TPR-containing nuclear 99.9 1.4E-16 3E-21 160.7 49.3 536 55-603 172-750 (1018)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-16 2.8E-21 169.3 49.0 425 86-561 130-571 (615)
22 PRK14574 hmsH outer membrane p 99.9 2E-15 4.3E-20 159.7 56.5 444 51-533 38-518 (822)
23 PRK15174 Vi polysaccharide exp 99.8 5.6E-17 1.2E-21 171.2 44.3 328 122-525 45-380 (656)
24 PRK10049 pgaA outer membrane p 99.8 3.5E-16 7.6E-21 169.0 50.9 416 82-560 14-455 (765)
25 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.5E-21 172.7 46.8 424 116-603 12-461 (765)
26 PRK15174 Vi polysaccharide exp 99.8 2E-16 4.3E-21 167.1 46.5 388 165-594 16-418 (656)
27 PRK14574 hmsH outer membrane p 99.8 1.4E-15 3E-20 160.9 52.3 427 129-594 44-511 (822)
28 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.7E-19 133.4 39.1 428 121-598 118-592 (625)
29 KOG0495 HAT repeat protein [RN 99.8 4.2E-13 9E-18 130.0 49.3 448 131-596 388-846 (913)
30 KOG0495 HAT repeat protein [RN 99.8 2.3E-12 5E-17 124.9 53.7 511 68-605 367-889 (913)
31 KOG1915 Cell cycle control pro 99.7 6.4E-12 1.4E-16 117.3 49.0 425 60-525 86-535 (677)
32 KOG2076 RNA polymerase III tra 99.7 4.4E-12 9.5E-17 127.9 49.1 534 59-603 151-854 (895)
33 KOG2003 TPR repeat-containing 99.7 6.8E-14 1.5E-18 129.4 28.9 452 121-582 203-709 (840)
34 KOG2076 RNA polymerase III tra 99.7 3E-11 6.4E-16 122.1 49.5 461 97-560 152-694 (895)
35 KOG4318 Bicoid mRNA stability 99.7 1.6E-13 3.6E-18 137.2 32.5 528 76-640 18-638 (1088)
36 KOG1915 Cell cycle control pro 99.7 3.2E-11 6.9E-16 112.8 42.3 434 118-596 72-536 (677)
37 KOG2003 TPR repeat-containing 99.6 2.8E-12 6E-17 119.0 31.3 277 264-547 428-709 (840)
38 KOG1155 Anaphase-promoting com 99.6 7.9E-11 1.7E-15 110.0 37.8 364 217-595 161-535 (559)
39 TIGR00540 hemY_coli hemY prote 99.6 8.8E-12 1.9E-16 125.1 33.8 286 267-594 96-397 (409)
40 KOG2047 mRNA splicing factor [ 99.6 1.8E-09 3.9E-14 105.1 47.4 510 84-611 103-704 (835)
41 PRK10747 putative protoheme IX 99.6 1.2E-11 2.6E-16 123.3 34.3 126 391-523 262-387 (398)
42 PRK10747 putative protoheme IX 99.6 2.3E-11 5.1E-16 121.3 35.1 194 393-595 188-389 (398)
43 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.6E-19 137.4 12.0 261 295-594 13-275 (280)
44 KOG4318 Bicoid mRNA stability 99.6 2.9E-11 6.3E-16 121.5 33.7 513 45-594 23-623 (1088)
45 TIGR00540 hemY_coli hemY prote 99.5 3.3E-11 7.2E-16 120.9 34.2 122 197-321 96-218 (409)
46 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.6E-15 107.3 32.8 286 198-525 97-389 (400)
47 KOG1155 Anaphase-promoting com 99.5 2E-09 4.4E-14 100.9 41.0 385 148-595 158-552 (559)
48 KOG0547 Translocase of outer m 99.5 9.7E-11 2.1E-15 110.2 32.2 411 124-594 120-564 (606)
49 PF13429 TPR_15: Tetratricopep 99.5 1.3E-13 2.8E-18 131.4 13.1 156 400-558 118-274 (280)
50 KOG2047 mRNA splicing factor [ 99.5 4E-08 8.7E-13 96.0 48.7 519 54-589 109-716 (835)
51 COG2956 Predicted N-acetylgluc 99.5 1.7E-10 3.7E-15 102.9 29.6 226 98-354 49-278 (389)
52 COG3071 HemY Uncharacterized e 99.5 4.4E-10 9.4E-15 103.6 32.4 292 233-559 97-388 (400)
53 KOG1126 DNA-binding cell divis 99.5 1.7E-11 3.6E-16 120.0 23.8 281 306-596 335-620 (638)
54 COG2956 Predicted N-acetylgluc 99.5 4.6E-10 9.9E-15 100.2 29.8 154 198-353 48-208 (389)
55 KOG1173 Anaphase-promoting com 99.5 4.6E-09 9.9E-14 101.1 38.2 281 289-576 243-531 (611)
56 KOG1173 Anaphase-promoting com 99.5 2.4E-09 5.1E-14 103.0 36.0 501 82-611 15-529 (611)
57 KOG1156 N-terminal acetyltrans 99.4 3.8E-08 8.2E-13 96.5 43.4 460 86-593 11-508 (700)
58 KOG3785 Uncharacterized conser 99.4 2.5E-09 5.4E-14 96.6 32.0 445 90-594 29-488 (557)
59 KOG1126 DNA-binding cell divis 99.4 1.2E-10 2.6E-15 114.1 24.9 283 235-565 334-624 (638)
60 KOG3785 Uncharacterized conser 99.4 1.5E-08 3.1E-13 91.8 35.4 447 57-535 32-497 (557)
61 KOG0547 Translocase of outer m 99.4 5.3E-09 1.2E-13 98.7 33.2 219 267-523 338-563 (606)
62 TIGR02521 type_IV_pilW type IV 99.3 3.2E-09 6.8E-14 98.7 28.1 200 391-595 30-231 (234)
63 KOG1174 Anaphase-promoting com 99.3 4.1E-07 8.8E-12 84.5 38.8 272 251-564 228-503 (564)
64 KOG1156 N-terminal acetyltrans 99.3 5.1E-07 1.1E-11 88.8 41.1 431 121-598 10-470 (700)
65 KOG1129 TPR repeat-containing 99.3 3.6E-10 7.8E-15 100.9 17.5 229 368-603 231-463 (478)
66 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.3E-16 80.9 6.5 50 495-544 1-50 (50)
67 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.3E-16 80.4 6.5 50 390-439 1-50 (50)
68 KOG2376 Signal recognition par 99.2 6.2E-07 1.3E-11 87.3 38.7 117 126-250 19-140 (652)
69 PRK12370 invasion protein regu 99.2 9.3E-09 2E-13 107.4 29.2 146 135-282 320-468 (553)
70 KOG4162 Predicted calmodulin-b 99.2 2.3E-06 4.9E-11 86.2 43.6 427 145-596 314-783 (799)
71 KOG4162 Predicted calmodulin-b 99.2 4E-07 8.8E-12 91.3 38.3 427 112-563 316-785 (799)
72 PRK12370 invasion protein regu 99.2 6E-09 1.3E-13 108.8 27.2 248 62-319 276-535 (553)
73 KOG1174 Anaphase-promoting com 99.2 1.9E-06 4.1E-11 80.2 38.9 297 193-532 204-504 (564)
74 TIGR02521 type_IV_pilW type IV 99.2 7.7E-09 1.7E-13 96.1 24.6 194 120-316 32-229 (234)
75 KOG1129 TPR repeat-containing 99.2 3.2E-09 7E-14 94.9 19.4 231 294-562 227-459 (478)
76 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.4E-13 100.6 25.3 243 291-559 200-477 (508)
77 PF12569 NARP1: NMDA receptor- 99.1 2.4E-07 5.2E-12 93.4 32.6 127 431-559 198-332 (517)
78 PF12569 NARP1: NMDA receptor- 99.1 2.2E-07 4.7E-12 93.8 31.7 288 264-594 13-332 (517)
79 KOG2376 Signal recognition par 99.1 8.4E-06 1.8E-10 79.6 40.4 445 90-558 19-517 (652)
80 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.7E-12 94.2 28.6 203 296-524 247-477 (508)
81 COG3063 PilF Tfp pilus assembl 99.1 8E-08 1.7E-12 82.3 23.1 196 394-594 37-234 (250)
82 KOG3617 WD40 and TPR repeat-co 99.1 6.4E-06 1.4E-10 83.3 39.7 226 59-317 740-994 (1416)
83 KOG0985 Vesicle coat protein c 99.1 6.6E-06 1.4E-10 85.0 40.5 322 219-594 983-1306(1666)
84 KOG0985 Vesicle coat protein c 99.1 2.7E-05 5.9E-10 80.7 42.6 494 48-581 607-1263(1666)
85 COG3063 PilF Tfp pilus assembl 99.0 1.1E-07 2.3E-12 81.5 20.8 171 429-603 37-208 (250)
86 PRK04841 transcriptional regul 99.0 6.3E-05 1.4E-09 85.1 47.7 200 397-596 536-760 (903)
87 KOG0548 Molecular co-chaperone 99.0 5E-06 1.1E-10 80.4 31.8 427 57-562 12-456 (539)
88 KOG1914 mRNA cleavage and poly 98.9 5.8E-05 1.3E-09 73.2 38.6 150 443-595 347-500 (656)
89 KOG3616 Selective LIM binding 98.9 6.2E-05 1.3E-09 75.4 38.7 192 296-519 738-930 (1636)
90 KOG3616 Selective LIM binding 98.9 2.3E-05 5.1E-10 78.3 35.0 58 50-111 618-675 (1636)
91 PF04733 Coatomer_E: Coatomer 98.9 3.9E-08 8.5E-13 92.2 15.5 147 437-594 112-263 (290)
92 KOG2053 Mitochondrial inherita 98.9 0.00014 3.1E-09 74.9 48.0 513 60-603 22-612 (932)
93 KOG3617 WD40 and TPR repeat-co 98.9 8.1E-05 1.8E-09 75.6 38.4 59 512-570 1306-1368(1416)
94 PRK11189 lipoprotein NlpI; Pro 98.9 7.4E-07 1.6E-11 85.1 23.6 201 393-603 65-271 (296)
95 PRK11189 lipoprotein NlpI; Pro 98.9 1.2E-06 2.7E-11 83.6 24.5 115 62-179 41-157 (296)
96 cd05804 StaR_like StaR_like; a 98.9 8.4E-06 1.8E-10 81.1 31.6 190 57-248 16-214 (355)
97 KOG1127 TPR repeat-containing 98.9 3.4E-05 7.4E-10 80.0 35.1 472 99-593 473-993 (1238)
98 cd05804 StaR_like StaR_like; a 98.8 4.7E-05 1E-09 75.7 34.2 22 503-524 270-291 (355)
99 KOG4340 Uncharacterized conser 98.8 1.2E-05 2.6E-10 71.6 25.7 193 86-287 13-210 (459)
100 PF04733 Coatomer_E: Coatomer 98.8 5.8E-07 1.2E-11 84.5 18.3 84 476-561 181-265 (290)
101 KOG0624 dsRNA-activated protei 98.8 0.00015 3.1E-09 66.3 33.9 319 159-525 43-369 (504)
102 KOG1127 TPR repeat-containing 98.7 7.1E-05 1.5E-09 77.8 32.6 182 60-248 471-658 (1238)
103 KOG1128 Uncharacterized conser 98.7 4.5E-06 9.8E-11 83.6 23.3 186 395-593 427-613 (777)
104 KOG4340 Uncharacterized conser 98.7 1.7E-05 3.8E-10 70.7 24.0 194 220-423 10-209 (459)
105 KOG1125 TPR repeat-containing 98.7 2.2E-06 4.7E-11 83.5 20.1 248 300-589 295-564 (579)
106 PRK04841 transcriptional regul 98.7 0.00013 2.8E-09 82.6 38.1 329 197-525 386-759 (903)
107 KOG3081 Vesicle coat complex C 98.7 2.2E-05 4.9E-10 69.1 23.8 250 338-603 21-276 (299)
108 KOG0624 dsRNA-activated protei 98.6 0.00013 2.7E-09 66.7 27.1 167 391-562 188-371 (504)
109 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.3E-10 71.2 19.8 159 431-594 70-229 (257)
110 PRK10370 formate-dependent nit 98.6 6.9E-06 1.5E-10 72.8 19.1 116 476-595 53-172 (198)
111 KOG1070 rRNA processing protei 98.6 4E-05 8.6E-10 82.3 27.4 234 289-558 1457-1697(1710)
112 KOG0548 Molecular co-chaperone 98.6 0.00015 3.2E-09 70.5 28.6 202 395-603 227-460 (539)
113 PF12854 PPR_1: PPR repeat 98.6 7.2E-08 1.6E-12 57.0 4.1 32 492-523 2-33 (34)
114 KOG1914 mRNA cleavage and poly 98.6 0.00082 1.8E-08 65.5 40.5 80 81-165 18-97 (656)
115 PLN02789 farnesyltranstransfer 98.6 0.0001 2.2E-09 70.4 26.6 231 335-606 47-312 (320)
116 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3E-10 74.1 20.1 184 390-595 31-231 (235)
117 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.6E-12 55.5 4.4 32 149-180 2-33 (34)
118 KOG1128 Uncharacterized conser 98.5 0.00022 4.7E-09 72.0 27.6 214 294-525 402-615 (777)
119 TIGR03302 OM_YfiO outer membra 98.5 4.3E-05 9.2E-10 70.8 21.1 183 358-561 31-232 (235)
120 COG4783 Putative Zn-dependent 98.4 0.00018 4E-09 69.3 24.7 184 389-597 271-455 (484)
121 PRK15359 type III secretion sy 98.4 1.1E-05 2.4E-10 67.5 15.0 91 468-561 30-121 (144)
122 PRK10370 formate-dependent nit 98.4 5.3E-05 1.1E-09 67.2 19.9 150 399-564 23-176 (198)
123 PRK15359 type III secretion sy 98.4 1.2E-05 2.5E-10 67.4 14.8 112 483-603 14-126 (144)
124 PLN02789 farnesyltranstransfer 98.4 0.00041 9E-09 66.3 27.1 147 409-559 125-300 (320)
125 KOG1070 rRNA processing protei 98.4 0.00028 6.2E-09 76.1 26.9 231 326-589 1459-1693(1710)
126 KOG3060 Uncharacterized conser 98.4 0.00038 8.2E-09 61.1 22.9 164 394-563 54-222 (289)
127 KOG1125 TPR repeat-containing 98.4 9.3E-05 2E-09 72.6 20.9 258 265-553 295-563 (579)
128 PRK15179 Vi polysaccharide bio 98.4 0.00013 2.8E-09 77.1 23.7 146 423-573 82-228 (694)
129 PRK15179 Vi polysaccharide bio 98.3 0.00028 6.1E-09 74.6 25.9 180 390-580 84-268 (694)
130 COG5010 TadD Flp pilus assembl 98.3 0.00016 3.5E-09 63.9 19.6 158 396-557 70-227 (257)
131 PRK14720 transcript cleavage f 98.3 0.00031 6.6E-09 75.1 24.2 132 429-578 118-268 (906)
132 KOG3060 Uncharacterized conser 98.3 0.00082 1.8E-08 59.1 22.0 188 405-596 25-220 (289)
133 KOG3081 Vesicle coat complex C 98.2 0.00064 1.4E-08 60.2 21.2 117 228-354 116-236 (299)
134 TIGR02552 LcrH_SycD type III s 98.2 6.7E-05 1.4E-09 62.5 15.0 94 465-560 20-113 (135)
135 TIGR02552 LcrH_SycD type III s 98.2 9.1E-05 2E-09 61.7 14.9 107 428-538 18-124 (135)
136 PRK14720 transcript cleavage f 98.2 0.00098 2.1E-08 71.4 25.1 150 327-508 118-268 (906)
137 COG4783 Putative Zn-dependent 98.1 0.00045 9.7E-09 66.7 19.2 125 468-596 312-437 (484)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00021 4.5E-09 69.7 17.4 126 462-594 169-295 (395)
139 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 48.6 4.6 33 499-531 2-34 (35)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00048 1E-08 67.2 17.7 126 393-524 170-295 (395)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00049 1.1E-08 57.9 15.2 116 475-593 24-144 (145)
142 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.4E-10 47.5 4.3 33 498-530 2-34 (34)
143 TIGR00756 PPR pentatricopeptid 98.0 1.7E-05 3.6E-10 47.7 4.5 33 257-289 2-34 (35)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00067 1.5E-08 57.1 15.4 117 440-558 24-144 (145)
145 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5E-10 46.7 4.2 33 568-600 2-34 (34)
146 KOG2053 Mitochondrial inherita 97.8 0.061 1.3E-06 56.4 48.1 445 97-560 22-535 (932)
147 PF10037 MRP-S27: Mitochondria 97.7 0.00067 1.5E-08 66.5 13.5 123 423-545 62-186 (429)
148 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.051 1.1E-06 52.3 35.3 177 461-644 396-576 (660)
149 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.2E-08 52.8 13.7 22 503-524 45-66 (119)
150 PF10037 MRP-S27: Mitochondria 97.7 0.0006 1.3E-08 66.8 13.0 116 187-302 68-185 (429)
151 cd00189 TPR Tetratricopeptide 97.7 0.00076 1.6E-08 51.8 11.6 90 502-594 5-95 (100)
152 cd00189 TPR Tetratricopeptide 97.7 0.00081 1.8E-08 51.6 11.5 94 465-560 3-96 (100)
153 PRK15363 pathogenicity island 97.7 0.00089 1.9E-08 55.2 11.6 89 468-559 41-130 (157)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.8E-08 53.2 12.8 98 498-597 3-106 (119)
155 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.4E-09 55.0 5.6 81 510-592 2-83 (84)
156 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 43.2 3.6 29 499-527 2-30 (31)
157 KOG2041 WD40 repeat protein [G 97.6 0.082 1.8E-06 53.8 26.1 376 116-559 689-1084(1189)
158 KOG0553 TPR repeat-containing 97.6 0.00062 1.3E-08 61.6 10.7 95 471-570 90-185 (304)
159 PF08579 RPM2: Mitochondrial r 97.6 0.00095 2.1E-08 50.8 9.9 75 297-371 32-115 (120)
160 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 50.3 10.5 78 88-166 30-116 (120)
161 PLN03088 SGT1, suppressor of 97.6 0.0017 3.7E-08 63.7 14.7 98 437-538 12-109 (356)
162 PLN03088 SGT1, suppressor of 97.6 0.0023 4.9E-08 62.9 14.9 101 469-573 9-110 (356)
163 PRK15363 pathogenicity island 97.6 0.0026 5.6E-08 52.5 12.7 94 500-596 38-132 (157)
164 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 42.6 3.5 28 257-284 2-29 (31)
165 PF05843 Suf: Suppressor of fo 97.5 0.0023 4.9E-08 60.5 13.6 129 429-560 3-135 (280)
166 COG4235 Cytochrome c biogenesi 97.5 0.0067 1.5E-07 55.5 15.6 101 494-596 153-256 (287)
167 CHL00033 ycf3 photosystem I as 97.5 0.0033 7.3E-08 54.4 13.3 92 463-556 36-137 (168)
168 PF05843 Suf: Suppressor of fo 97.5 0.0021 4.5E-08 60.8 12.8 145 393-542 2-150 (280)
169 KOG0553 TPR repeat-containing 97.5 0.0017 3.7E-08 58.9 11.2 102 437-542 91-192 (304)
170 PRK02603 photosystem I assembl 97.4 0.0054 1.2E-07 53.4 14.0 85 464-550 37-124 (172)
171 PRK10153 DNA-binding transcrip 97.4 0.014 3E-07 60.0 18.8 64 497-562 420-483 (517)
172 PF14938 SNAP: Soluble NSF att 97.4 0.026 5.7E-07 53.6 19.4 86 234-319 129-225 (282)
173 PF12895 Apc3: Anaphase-promot 97.4 0.00042 9.1E-09 51.8 5.8 79 476-557 3-83 (84)
174 PRK02603 photosystem I assembl 97.3 0.0091 2E-07 51.9 14.3 92 82-175 34-127 (172)
175 COG4700 Uncharacterized protei 97.3 0.03 6.6E-07 47.0 16.0 125 460-588 87-214 (251)
176 PRK10866 outer membrane biogen 97.3 0.11 2.5E-06 47.7 21.8 59 89-149 38-99 (243)
177 KOG0550 Molecular chaperone (D 97.3 0.056 1.2E-06 51.5 19.4 49 265-314 59-107 (486)
178 KOG2041 WD40 repeat protein [G 97.3 0.28 6E-06 50.2 33.0 172 151-348 689-875 (1189)
179 PF06239 ECSIT: Evolutionarily 97.3 0.0064 1.4E-07 52.7 11.9 104 218-340 45-153 (228)
180 COG4235 Cytochrome c biogenesi 97.2 0.02 4.3E-07 52.5 15.5 111 450-564 145-259 (287)
181 PF04840 Vps16_C: Vps16, C-ter 97.2 0.21 4.5E-06 47.9 28.8 108 362-486 179-286 (319)
182 CHL00033 ycf3 photosystem I as 97.2 0.011 2.4E-07 51.2 13.5 81 83-165 35-117 (168)
183 PRK10153 DNA-binding transcrip 97.2 0.031 6.7E-07 57.5 18.6 138 460-602 335-486 (517)
184 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.1E-08 45.4 6.8 55 470-525 5-59 (65)
185 KOG2280 Vacuolar assembly/sort 97.1 0.4 8.8E-06 49.6 24.8 341 112-487 425-795 (829)
186 PF07079 DUF1347: Protein of u 97.1 0.29 6.3E-06 47.5 44.8 89 55-148 14-108 (549)
187 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.9E-08 46.2 5.7 54 505-560 5-59 (65)
188 PF14559 TPR_19: Tetratricopep 97.1 0.0019 4E-08 45.9 6.4 50 475-525 4-53 (68)
189 PF06239 ECSIT: Evolutionarily 97.1 0.0097 2.1E-07 51.7 11.3 88 82-169 46-153 (228)
190 PF14938 SNAP: Soluble NSF att 97.1 0.072 1.6E-06 50.6 18.7 92 434-525 121-224 (282)
191 PF13414 TPR_11: TPR repeat; P 97.1 0.0024 5.2E-08 45.5 6.5 59 499-559 5-65 (69)
192 PF13414 TPR_11: TPR repeat; P 97.0 0.0027 6E-08 45.2 6.6 64 461-525 2-66 (69)
193 PF07079 DUF1347: Protein of u 97.0 0.38 8.2E-06 46.8 39.9 198 392-594 298-522 (549)
194 KOG2796 Uncharacterized conser 97.0 0.037 8E-07 49.3 14.1 163 156-319 138-315 (366)
195 KOG1538 Uncharacterized conser 97.0 0.063 1.4E-06 54.0 17.2 86 464-560 749-845 (1081)
196 COG4700 Uncharacterized protei 97.0 0.18 3.9E-06 42.6 19.1 135 423-559 85-220 (251)
197 PF12688 TPR_5: Tetratrico pep 97.0 0.037 8.1E-07 44.1 12.9 90 468-559 7-102 (120)
198 PF03704 BTAD: Bacterial trans 96.9 0.051 1.1E-06 45.7 14.7 69 465-534 65-138 (146)
199 PF14559 TPR_19: Tetratricopep 96.9 0.0035 7.7E-08 44.5 6.4 53 439-492 3-55 (68)
200 KOG2796 Uncharacterized conser 96.8 0.05 1.1E-06 48.4 13.7 134 430-564 180-318 (366)
201 PF12688 TPR_5: Tetratrico pep 96.8 0.047 1E-06 43.5 12.1 97 97-195 14-116 (120)
202 PF03704 BTAD: Bacterial trans 96.8 0.12 2.7E-06 43.3 15.7 57 536-593 66-122 (146)
203 PRK10866 outer membrane biogen 96.7 0.49 1.1E-05 43.6 22.8 176 398-594 38-239 (243)
204 KOG1538 Uncharacterized conser 96.7 0.34 7.3E-06 49.1 19.7 210 140-421 621-846 (1081)
205 PF13281 DUF4071: Domain of un 96.6 0.34 7.3E-06 47.0 19.0 165 430-596 144-334 (374)
206 PRK10803 tol-pal system protei 96.6 0.045 9.8E-07 50.8 12.8 59 500-560 183-245 (263)
207 PRK10803 tol-pal system protei 96.6 0.046 1E-06 50.7 12.8 93 438-532 154-250 (263)
208 PF13371 TPR_9: Tetratricopept 96.6 0.015 3.2E-07 41.9 7.8 54 471-525 4-57 (73)
209 KOG1130 Predicted G-alpha GTPa 96.6 0.022 4.7E-07 54.0 10.2 133 464-596 197-344 (639)
210 PF13525 YfiO: Outer membrane 96.5 0.51 1.1E-05 42.2 18.4 171 398-587 11-198 (203)
211 PRK15331 chaperone protein Sic 96.5 0.099 2.1E-06 43.6 12.4 85 509-595 49-133 (165)
212 KOG0543 FKBP-type peptidyl-pro 96.4 0.09 1.9E-06 50.3 13.5 98 497-596 257-355 (397)
213 PF13371 TPR_9: Tetratricopept 96.4 0.014 3.1E-07 42.0 6.7 53 506-560 4-57 (73)
214 PF09205 DUF1955: Domain of un 96.3 0.35 7.6E-06 38.3 13.8 63 500-563 89-151 (161)
215 KOG0550 Molecular chaperone (D 96.3 1.1 2.3E-05 43.2 20.7 88 403-491 260-350 (486)
216 PF12921 ATP13: Mitochondrial 96.2 0.12 2.5E-06 41.8 11.4 100 462-581 2-102 (126)
217 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.078 1.7E-06 52.0 12.2 64 461-526 74-141 (453)
218 COG3898 Uncharacterized membra 96.2 1.3 2.8E-05 42.3 28.0 47 166-212 166-215 (531)
219 PF13424 TPR_12: Tetratricopep 96.1 0.018 3.9E-07 42.2 5.7 62 533-594 6-73 (78)
220 PF13525 YfiO: Outer membrane 96.0 1.1 2.4E-05 40.1 19.6 52 97-148 18-71 (203)
221 PF13281 DUF4071: Domain of un 96.0 1.4 3.1E-05 42.8 19.3 33 530-562 303-335 (374)
222 PRK15331 chaperone protein Sic 95.9 0.7 1.5E-05 38.7 14.6 90 469-560 44-133 (165)
223 PF09205 DUF1955: Domain of un 95.8 0.74 1.6E-05 36.6 13.3 140 438-599 13-152 (161)
224 PF10300 DUF3808: Protein of u 95.7 0.84 1.8E-05 46.8 17.9 116 476-594 247-374 (468)
225 KOG2610 Uncharacterized conser 95.7 0.31 6.6E-06 45.3 12.8 154 404-559 115-274 (491)
226 PF04840 Vps16_C: Vps16, C-ter 95.7 2.1 4.6E-05 41.1 28.7 83 258-350 180-262 (319)
227 PF13424 TPR_12: Tetratricopep 95.7 0.023 4.9E-07 41.6 4.8 63 498-560 6-74 (78)
228 KOG1130 Predicted G-alpha GTPa 95.6 0.14 3E-06 48.8 10.3 132 222-353 197-343 (639)
229 KOG2114 Vacuolar assembly/sort 95.5 4.1 8.8E-05 43.3 21.3 148 49-210 336-488 (933)
230 PF10300 DUF3808: Protein of u 95.5 0.99 2.1E-05 46.3 17.2 163 395-559 191-374 (468)
231 PF12921 ATP13: Mitochondrial 95.4 0.25 5.5E-06 39.8 10.2 49 458-506 48-97 (126)
232 COG3898 Uncharacterized membra 95.4 2.7 5.9E-05 40.3 31.9 254 267-565 132-396 (531)
233 PRK11906 transcriptional regul 95.3 1.9 4E-05 42.8 17.5 80 478-560 320-400 (458)
234 COG3118 Thioredoxin domain-con 95.2 2.6 5.6E-05 39.0 17.7 150 436-590 143-295 (304)
235 smart00299 CLH Clathrin heavy 95.2 1.6 3.4E-05 36.3 16.5 126 430-578 10-136 (140)
236 PF04053 Coatomer_WDAD: Coatom 95.1 0.74 1.6E-05 46.5 14.5 154 97-280 274-427 (443)
237 KOG2114 Vacuolar assembly/sort 95.0 5.9 0.00013 42.1 26.2 49 503-555 711-759 (933)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.66 1.4E-05 45.8 13.3 68 424-491 72-141 (453)
239 KOG2610 Uncharacterized conser 94.9 0.78 1.7E-05 42.8 12.9 150 372-524 115-274 (491)
240 KOG4555 TPR repeat-containing 94.9 0.59 1.3E-05 37.0 10.4 91 471-562 52-145 (175)
241 KOG0543 FKBP-type peptidyl-pro 94.9 0.65 1.4E-05 44.7 12.7 96 462-560 257-354 (397)
242 KOG3941 Intermediate in Toll s 94.7 0.46 1E-05 43.1 10.6 89 81-169 65-173 (406)
243 smart00299 CLH Clathrin heavy 94.6 2.3 4.9E-05 35.3 15.2 127 48-195 8-135 (140)
244 PF04184 ST7: ST7 protein; In 94.6 0.96 2.1E-05 44.9 13.2 18 474-491 212-229 (539)
245 COG1729 Uncharacterized protei 94.2 0.71 1.5E-05 42.1 10.9 95 499-596 144-244 (262)
246 PF13428 TPR_14: Tetratricopep 94.1 0.15 3.3E-06 32.1 4.9 22 503-524 7-28 (44)
247 PF04053 Coatomer_WDAD: Coatom 94.1 1.8 4E-05 43.7 14.8 129 328-486 298-426 (443)
248 COG0457 NrfG FOG: TPR repeat [ 94.1 4.5 9.7E-05 36.8 24.4 193 398-594 65-263 (291)
249 PF13170 DUF4003: Protein of u 94.1 5.6 0.00012 37.8 20.1 129 202-332 79-224 (297)
250 PRK11906 transcriptional regul 94.0 2.7 5.9E-05 41.7 15.2 123 477-603 273-406 (458)
251 KOG1920 IkappaB kinase complex 94.0 13 0.00027 41.6 23.7 172 301-489 862-1053(1265)
252 KOG1585 Protein required for f 93.9 4.5 9.7E-05 36.2 17.5 176 83-281 31-216 (308)
253 COG4105 ComL DNA uptake lipopr 93.9 4.8 0.0001 36.5 22.5 83 81-165 33-117 (254)
254 KOG3941 Intermediate in Toll s 93.9 0.77 1.7E-05 41.7 10.3 105 424-547 64-173 (406)
255 KOG2280 Vacuolar assembly/sort 93.7 11 0.00024 39.7 36.5 109 427-554 684-792 (829)
256 COG1729 Uncharacterized protei 93.6 1.2 2.7E-05 40.6 11.3 87 404-490 153-243 (262)
257 COG3629 DnrI DNA-binding trans 93.5 0.94 2E-05 42.0 10.6 79 462-541 153-236 (280)
258 KOG1258 mRNA processing protei 93.5 10 0.00022 38.9 34.0 185 391-581 296-489 (577)
259 KOG4555 TPR repeat-containing 93.4 2.1 4.5E-05 34.1 10.5 88 507-597 53-145 (175)
260 PF13170 DUF4003: Protein of u 93.3 7.7 0.00017 36.9 19.6 131 408-540 78-225 (297)
261 PF04097 Nic96: Nup93/Nic96; 93.2 14 0.0003 39.6 20.9 44 224-268 115-158 (613)
262 PF13512 TPR_18: Tetratricopep 93.2 3.4 7.3E-05 33.9 12.0 53 439-491 22-76 (142)
263 COG3118 Thioredoxin domain-con 93.1 7.3 0.00016 36.2 18.6 140 127-269 142-286 (304)
264 KOG1920 IkappaB kinase complex 93.1 17 0.00038 40.5 23.9 83 465-559 942-1026(1265)
265 PF08631 SPO22: Meiosis protei 93.1 8 0.00017 36.6 25.5 102 222-325 86-192 (278)
266 PF13428 TPR_14: Tetratricopep 93.1 0.34 7.4E-06 30.5 5.2 39 464-503 3-41 (44)
267 PF08631 SPO22: Meiosis protei 92.9 8.7 0.00019 36.4 27.0 165 428-594 85-273 (278)
268 COG3629 DnrI DNA-binding trans 92.7 1.2 2.5E-05 41.4 10.0 72 497-570 153-230 (280)
269 PF13431 TPR_17: Tetratricopep 92.5 0.19 4.1E-06 29.5 3.1 31 556-587 3-33 (34)
270 PF04184 ST7: ST7 protein; In 92.5 13 0.00028 37.4 16.9 56 398-453 265-321 (539)
271 KOG1941 Acetylcholine receptor 92.3 3.1 6.8E-05 39.4 12.0 46 301-346 17-64 (518)
272 KOG1585 Protein required for f 92.1 8.7 0.00019 34.5 17.2 55 500-555 193-250 (308)
273 COG4105 ComL DNA uptake lipopr 92.0 9.3 0.0002 34.8 20.5 182 392-594 35-231 (254)
274 PF10602 RPN7: 26S proteasome 91.9 2.5 5.4E-05 36.7 10.7 96 464-559 38-140 (177)
275 PF07035 Mic1: Colon cancer-as 91.7 7.6 0.00016 33.0 15.7 134 205-354 14-149 (167)
276 COG4649 Uncharacterized protei 91.3 8.1 0.00018 32.7 13.4 123 196-318 69-195 (221)
277 COG5107 RNA14 Pre-mRNA 3'-end 91.2 16 0.00036 36.0 31.6 456 66-545 28-548 (660)
278 PF13512 TPR_18: Tetratricopep 90.9 7.8 0.00017 31.8 13.0 84 82-167 10-95 (142)
279 PF10602 RPN7: 26S proteasome 90.6 3.5 7.5E-05 35.8 10.2 60 188-247 39-100 (177)
280 PF09613 HrpB1_HrpK: Bacterial 90.6 9.4 0.0002 32.0 13.2 50 474-525 22-72 (160)
281 PF13176 TPR_7: Tetratricopept 90.5 0.63 1.4E-05 27.7 4.0 23 500-522 2-24 (36)
282 PF13176 TPR_7: Tetratricopept 90.4 0.61 1.3E-05 27.8 3.9 26 569-594 1-26 (36)
283 COG4649 Uncharacterized protei 90.2 10 0.00023 32.0 13.8 127 474-602 70-202 (221)
284 PF13431 TPR_17: Tetratricopep 89.8 0.5 1.1E-05 27.7 3.1 22 496-517 12-33 (34)
285 COG0457 NrfG FOG: TPR repeat [ 89.5 16 0.00034 33.0 30.3 168 392-563 95-267 (291)
286 PF07035 Mic1: Colon cancer-as 89.3 13 0.00027 31.7 15.4 101 140-246 15-115 (167)
287 PF00515 TPR_1: Tetratricopept 89.3 0.86 1.9E-05 26.5 3.9 26 500-525 4-29 (34)
288 KOG2396 HAT (Half-A-TPR) repea 89.0 27 0.00059 35.1 37.0 90 501-593 464-556 (568)
289 PF00637 Clathrin: Region in C 89.0 0.051 1.1E-06 45.5 -2.3 128 261-407 13-140 (143)
290 KOG1258 mRNA processing protei 88.6 32 0.0007 35.5 35.5 130 81-214 43-180 (577)
291 TIGR02561 HrpB1_HrpK type III 88.5 13 0.00028 30.7 12.5 50 475-526 23-73 (153)
292 KOG1550 Extracellular protein 88.5 37 0.0008 36.0 19.3 152 439-599 261-429 (552)
293 PRK11619 lytic murein transgly 88.2 41 0.0009 36.2 34.6 345 75-451 91-463 (644)
294 KOG4234 TPR repeat-containing 88.1 17 0.00037 31.7 12.3 92 470-564 103-200 (271)
295 PF02284 COX5A: Cytochrome c o 87.9 8.8 0.00019 29.1 8.9 62 100-163 26-88 (108)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 87.7 4.4 9.5E-05 30.3 7.2 63 99-163 22-85 (103)
297 KOG4234 TPR repeat-containing 87.6 7.5 0.00016 33.7 9.6 90 505-596 103-197 (271)
298 KOG1941 Acetylcholine receptor 87.4 12 0.00026 35.7 11.6 126 467-592 127-271 (518)
299 PF07719 TPR_2: Tetratricopept 87.3 1.4 2.9E-05 25.5 3.9 23 502-524 6-28 (34)
300 PF02284 COX5A: Cytochrome c o 87.0 4.1 8.9E-05 30.8 6.9 46 238-283 28-73 (108)
301 PF09613 HrpB1_HrpK: Bacterial 87.0 17 0.00037 30.5 14.3 68 438-508 21-88 (160)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 6.6 0.00014 29.5 7.7 59 514-574 24-83 (103)
303 KOG0276 Vesicle coat complex C 86.3 11 0.00023 38.7 11.4 97 232-349 649-745 (794)
304 PRK09687 putative lyase; Provi 86.0 31 0.00068 32.6 25.2 49 117-169 35-83 (280)
305 PF13929 mRNA_stabil: mRNA sta 85.9 20 0.00044 33.4 12.2 158 64-226 113-284 (292)
306 PF10345 Cohesin_load: Cohesin 85.3 59 0.0013 35.1 41.9 191 403-594 372-604 (608)
307 PF06552 TOM20_plant: Plant sp 85.0 19 0.00042 30.8 10.7 42 513-562 96-137 (186)
308 KOG4570 Uncharacterized conser 84.7 8.7 0.00019 35.9 9.2 53 405-457 113-165 (418)
309 PRK09687 putative lyase; Provi 84.4 37 0.00081 32.1 26.9 36 398-436 241-276 (280)
310 PF00637 Clathrin: Region in C 84.1 1.6 3.5E-05 36.4 4.3 82 90-179 14-95 (143)
311 KOG4648 Uncharacterized conser 84.1 3.6 7.7E-05 38.7 6.6 57 468-525 103-159 (536)
312 PF13929 mRNA_stabil: mRNA sta 84.0 37 0.00081 31.7 16.5 111 170-280 144-263 (292)
313 PF00515 TPR_1: Tetratricopept 83.9 3.3 7.1E-05 23.9 4.4 27 534-560 3-29 (34)
314 PF13374 TPR_10: Tetratricopep 83.9 2.6 5.6E-05 25.7 4.2 27 568-594 3-29 (42)
315 KOG1550 Extracellular protein 83.7 64 0.0014 34.2 26.6 116 236-356 228-359 (552)
316 PF04097 Nic96: Nup93/Nic96; 83.6 68 0.0015 34.5 23.4 40 159-198 116-158 (613)
317 PF11207 DUF2989: Protein of u 83.0 13 0.00028 32.6 9.1 77 509-587 119-198 (203)
318 COG2976 Uncharacterized protei 82.7 32 0.00069 30.0 14.3 91 505-600 97-192 (207)
319 PF02259 FAT: FAT domain; Int 82.6 52 0.0011 32.4 20.7 65 496-560 145-212 (352)
320 TIGR03504 FimV_Cterm FimV C-te 82.1 1.1 2.5E-05 28.0 1.9 23 573-595 5-27 (44)
321 PF13374 TPR_10: Tetratricopep 82.0 3.3 7.1E-05 25.2 4.2 25 499-523 4-28 (42)
322 PRK15180 Vi polysaccharide bio 82.0 14 0.0003 36.7 9.9 134 434-571 296-430 (831)
323 PF07719 TPR_2: Tetratricopept 81.9 4.3 9.4E-05 23.3 4.4 25 570-594 4-28 (34)
324 KOG2066 Vacuolar assembly/sort 81.2 83 0.0018 33.8 29.8 102 126-232 363-467 (846)
325 TIGR02561 HrpB1_HrpK type III 81.0 30 0.00066 28.6 12.6 52 440-492 23-74 (153)
326 TIGR02508 type_III_yscG type I 80.7 22 0.00049 26.9 8.5 78 135-215 21-98 (115)
327 PF10345 Cohesin_load: Cohesin 80.7 88 0.0019 33.7 40.0 183 64-247 38-252 (608)
328 COG4785 NlpI Lipoprotein NlpI, 80.7 40 0.00088 29.9 14.0 155 119-284 99-266 (297)
329 PF11207 DUF2989: Protein of u 80.7 17 0.00036 31.9 9.0 73 131-205 119-198 (203)
330 PF13762 MNE1: Mitochondrial s 80.4 23 0.00051 29.2 9.3 76 158-233 43-128 (145)
331 PF13181 TPR_8: Tetratricopept 80.2 2.9 6.3E-05 24.1 3.2 24 501-524 5-28 (34)
332 KOG0276 Vesicle coat complex C 79.9 32 0.0007 35.5 11.8 149 404-592 598-746 (794)
333 COG4455 ImpE Protein of avirul 79.6 14 0.00031 32.6 8.1 57 432-489 6-62 (273)
334 PF02259 FAT: FAT domain; Int 79.1 68 0.0015 31.5 23.9 66 391-456 145-213 (352)
335 PF06552 TOM20_plant: Plant sp 78.9 20 0.00043 30.8 8.7 79 513-601 51-141 (186)
336 PF07721 TPR_4: Tetratricopept 78.9 2.6 5.6E-05 22.8 2.4 22 570-591 4-25 (26)
337 KOG4570 Uncharacterized conser 78.9 34 0.00073 32.2 10.7 102 422-525 59-163 (418)
338 PF08424 NRDE-2: NRDE-2, neces 78.7 67 0.0014 31.2 17.8 77 445-523 49-128 (321)
339 COG3947 Response regulator con 77.9 61 0.0013 30.3 16.8 58 535-593 282-339 (361)
340 PHA02875 ankyrin repeat protei 77.8 84 0.0018 31.8 16.7 204 97-325 12-230 (413)
341 KOG0890 Protein kinase of the 77.7 1.9E+02 0.0041 35.9 34.4 151 225-383 1388-1541(2382)
342 COG1747 Uncharacterized N-term 77.6 87 0.0019 31.9 24.6 179 391-577 65-249 (711)
343 COG5159 RPN6 26S proteasome re 77.5 57 0.0012 30.3 11.6 38 572-611 130-171 (421)
344 KOG4648 Uncharacterized conser 77.4 14 0.0003 35.0 8.0 50 401-452 106-156 (536)
345 PF07163 Pex26: Pex26 protein; 77.2 33 0.00071 31.8 10.0 86 398-485 89-181 (309)
346 COG2976 Uncharacterized protei 75.8 54 0.0012 28.6 14.9 114 445-563 70-190 (207)
347 PF13181 TPR_8: Tetratricopept 74.8 8.2 0.00018 22.1 4.1 28 568-595 2-29 (34)
348 TIGR03504 FimV_Cterm FimV C-te 72.2 11 0.00024 23.7 4.2 23 226-248 5-27 (44)
349 COG4785 NlpI Lipoprotein NlpI, 71.6 75 0.0016 28.3 17.6 164 387-563 93-268 (297)
350 PF15469 Sec5: Exocyst complex 71.3 70 0.0015 27.9 11.2 116 468-608 63-180 (182)
351 COG4455 ImpE Protein of avirul 70.8 78 0.0017 28.3 11.5 74 465-541 4-81 (273)
352 KOG3364 Membrane protein invol 70.7 56 0.0012 26.6 9.3 65 530-594 30-98 (149)
353 PF13174 TPR_6: Tetratricopept 70.2 4.9 0.00011 22.8 2.4 6 478-483 16-21 (33)
354 TIGR02508 type_III_yscG type I 69.7 45 0.00098 25.4 7.5 77 512-597 20-98 (115)
355 PF07163 Pex26: Pex26 protein; 69.4 68 0.0015 29.8 10.1 56 192-247 90-145 (309)
356 PF13762 MNE1: Mitochondrial s 69.2 57 0.0012 27.1 8.9 89 78-167 32-128 (145)
357 KOG4077 Cytochrome c oxidase, 68.4 28 0.00061 27.7 6.5 61 101-162 66-126 (149)
358 PF13174 TPR_6: Tetratricopept 68.2 10 0.00022 21.4 3.5 16 543-558 11-26 (33)
359 KOG0991 Replication factor C, 67.5 58 0.0013 29.4 9.0 47 116-164 236-282 (333)
360 PF09477 Type_III_YscG: Bacter 67.1 57 0.0012 25.2 7.7 80 133-215 20-99 (116)
361 PF07575 Nucleopor_Nup85: Nup8 66.8 1.8E+02 0.004 31.0 20.8 31 78-110 144-174 (566)
362 smart00028 TPR Tetratricopepti 66.0 12 0.00026 20.3 3.6 21 503-523 7-27 (34)
363 PF07575 Nucleopor_Nup85: Nup8 65.8 1.9E+02 0.0042 30.8 19.3 27 154-181 149-175 (566)
364 PF09986 DUF2225: Uncharacteri 65.7 87 0.0019 28.2 10.3 67 534-600 120-198 (214)
365 KOG0403 Neoplastic transformat 65.4 1.5E+02 0.0033 29.6 18.8 336 158-512 218-589 (645)
366 PF10579 Rapsyn_N: Rapsyn N-te 64.4 24 0.00052 25.5 5.1 46 509-554 18-65 (80)
367 KOG4077 Cytochrome c oxidase, 64.4 40 0.00086 26.9 6.7 44 240-283 69-112 (149)
368 PRK11619 lytic murein transgly 64.4 2.2E+02 0.0047 31.0 43.4 398 155-603 100-512 (644)
369 PF10579 Rapsyn_N: Rapsyn N-te 64.0 25 0.00053 25.4 5.1 50 539-589 14-65 (80)
370 KOG3807 Predicted membrane pro 63.1 1.4E+02 0.0031 28.4 12.2 55 503-559 281-338 (556)
371 KOG2066 Vacuolar assembly/sort 63.0 2.3E+02 0.005 30.8 26.5 100 161-267 363-467 (846)
372 KOG4642 Chaperone-dependent E3 62.7 1.2E+02 0.0027 27.5 10.9 82 439-523 22-104 (284)
373 KOG2297 Predicted translation 61.0 1.5E+02 0.0033 28.0 16.6 74 337-412 267-341 (412)
374 PF11846 DUF3366: Domain of un 60.6 42 0.0009 29.6 7.4 31 564-594 141-171 (193)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 59.1 85 0.0018 25.4 8.3 43 550-592 81-124 (126)
376 COG0790 FOG: TPR repeat, SEL1 58.9 1.7E+02 0.0036 27.9 23.0 186 405-603 54-273 (292)
377 PHA02875 ankyrin repeat protei 58.1 2.2E+02 0.0047 28.9 16.7 19 161-179 39-57 (413)
378 COG3947 Response regulator con 57.4 1.7E+02 0.0037 27.5 16.7 53 298-351 287-339 (361)
379 KOG0890 Protein kinase of the 56.6 5E+02 0.011 32.6 24.4 316 159-492 1388-1732(2382)
380 PF11848 DUF3368: Domain of un 54.6 54 0.0012 21.0 5.2 29 545-573 15-43 (48)
381 PF11848 DUF3368: Domain of un 54.2 44 0.00096 21.4 4.7 31 197-227 14-44 (48)
382 PRK10941 hypothetical protein; 53.6 2E+02 0.0043 27.1 10.9 58 501-560 185-243 (269)
383 PF14853 Fis1_TPR_C: Fis1 C-te 52.9 57 0.0012 21.5 5.1 27 504-532 8-34 (53)
384 PF11817 Foie-gras_1: Foie gra 52.6 76 0.0016 29.4 8.0 60 534-593 180-244 (247)
385 KOG1464 COP9 signalosome, subu 52.3 2E+02 0.0043 26.7 16.6 59 224-282 149-218 (440)
386 KOG2471 TPR repeat-containing 51.9 2.8E+02 0.0061 28.3 12.5 110 470-580 248-382 (696)
387 KOG4507 Uncharacterized conser 50.6 82 0.0018 32.6 8.0 98 475-574 620-717 (886)
388 PF12926 MOZART2: Mitotic-spin 50.6 1E+02 0.0022 22.8 8.5 65 530-596 8-72 (88)
389 KOG1464 COP9 signalosome, subu 50.3 2.1E+02 0.0046 26.5 17.0 155 199-353 41-219 (440)
390 PF14689 SPOB_a: Sensor_kinase 49.1 69 0.0015 21.9 5.3 22 261-282 29-50 (62)
391 cd08819 CARD_MDA5_2 Caspase ac 48.6 1.1E+02 0.0024 22.7 6.5 14 133-146 50-63 (88)
392 PF14689 SPOB_a: Sensor_kinase 48.4 60 0.0013 22.2 4.9 44 549-594 7-50 (62)
393 PF04190 DUF410: Protein of un 48.2 2.4E+02 0.0051 26.4 17.0 82 153-249 89-170 (260)
394 KOG2034 Vacuolar sorting prote 48.1 4.3E+02 0.0092 29.4 26.6 131 331-478 510-644 (911)
395 COG4941 Predicted RNA polymera 47.4 2.7E+02 0.0059 26.9 10.9 116 478-596 272-394 (415)
396 KOG4507 Uncharacterized conser 46.8 1.6E+02 0.0034 30.7 9.3 113 103-215 194-313 (886)
397 PF10255 Paf67: RNA polymerase 46.6 93 0.002 31.1 7.8 99 496-594 74-191 (404)
398 COG0735 Fur Fe2+/Zn2+ uptake r 46.4 1.1E+02 0.0024 25.5 7.2 62 414-476 8-69 (145)
399 PF13934 ELYS: Nuclear pore co 46.0 1.4E+02 0.0031 27.1 8.5 95 59-166 90-184 (226)
400 PF04762 IKI3: IKI3 family; I 45.9 5.2E+02 0.011 29.7 17.1 50 441-491 792-843 (928)
401 KOG0686 COP9 signalosome, subu 45.8 3.2E+02 0.0069 27.2 13.8 62 257-318 152-215 (466)
402 KOG1586 Protein required for f 45.7 2.4E+02 0.0052 25.7 20.0 18 474-491 166-183 (288)
403 PF09670 Cas_Cas02710: CRISPR- 45.3 3.3E+02 0.0071 27.2 12.7 55 436-491 140-198 (379)
404 KOG0530 Protein farnesyltransf 45.1 2.6E+02 0.0056 26.0 13.9 170 437-612 53-232 (318)
405 PF11846 DUF3366: Domain of un 44.7 59 0.0013 28.7 5.8 33 116-148 141-173 (193)
406 PF11838 ERAP1_C: ERAP1-like C 44.2 3E+02 0.0066 26.5 19.0 82 236-320 146-231 (324)
407 PRK08691 DNA polymerase III su 44.1 3E+02 0.0066 30.0 11.4 45 479-525 181-226 (709)
408 KOG2063 Vacuolar assembly/sort 44.1 5.1E+02 0.011 29.1 18.6 27 222-248 506-532 (877)
409 smart00638 LPD_N Lipoprotein N 43.9 4.4E+02 0.0094 28.2 24.5 18 294-311 464-481 (574)
410 COG1747 Uncharacterized N-term 43.4 3.9E+02 0.0085 27.6 25.4 94 396-492 136-235 (711)
411 KOG1308 Hsp70-interacting prot 43.3 33 0.00071 32.8 3.9 85 476-563 128-213 (377)
412 COG5108 RPO41 Mitochondrial DN 43.0 1.4E+02 0.0031 31.5 8.5 90 397-489 33-130 (1117)
413 PRK14958 DNA polymerase III su 42.8 3.7E+02 0.0079 28.3 11.9 34 490-525 193-226 (509)
414 PF04762 IKI3: IKI3 family; I 42.7 3E+02 0.0065 31.5 11.9 24 122-145 697-720 (928)
415 PF11663 Toxin_YhaV: Toxin wit 42.7 38 0.00082 27.4 3.6 32 197-230 107-138 (140)
416 PF12862 Apc5: Anaphase-promot 41.9 1.5E+02 0.0032 22.3 7.0 20 575-594 49-68 (94)
417 KOG0376 Serine-threonine phosp 41.7 38 0.00083 34.0 4.3 88 469-560 11-100 (476)
418 PRK09857 putative transposase; 41.6 1.8E+02 0.0038 27.8 8.7 67 536-603 210-276 (292)
419 PRK10564 maltose regulon perip 41.6 54 0.0012 30.9 5.0 37 499-535 259-295 (303)
420 COG0735 Fur Fe2+/Zn2+ uptake r 41.5 1.6E+02 0.0034 24.6 7.4 63 105-168 7-69 (145)
421 PRK13342 recombination factor 41.3 4E+02 0.0086 27.0 19.1 21 199-219 244-264 (413)
422 COG4259 Uncharacterized protei 41.1 1.3E+02 0.0029 22.9 5.9 46 549-594 54-99 (121)
423 KOG4642 Chaperone-dependent E3 40.6 2.9E+02 0.0063 25.3 10.9 118 402-523 20-143 (284)
424 cd00280 TRFH Telomeric Repeat 40.3 2.3E+02 0.0049 24.7 8.0 21 470-490 119-139 (200)
425 cd00280 TRFH Telomeric Repeat 40.2 2.1E+02 0.0045 24.9 7.7 41 503-546 117-157 (200)
426 PRK14951 DNA polymerase III su 40.2 4E+02 0.0087 28.7 11.7 33 490-524 198-230 (618)
427 PRK10564 maltose regulon perip 40.0 56 0.0012 30.8 4.8 45 389-433 253-298 (303)
428 KOG3364 Membrane protein invol 39.6 2.1E+02 0.0046 23.4 8.9 67 495-562 30-101 (149)
429 PF08424 NRDE-2: NRDE-2, neces 39.1 3.7E+02 0.0081 26.1 18.6 97 391-489 18-129 (321)
430 PF00244 14-3-3: 14-3-3 protei 39.1 3.1E+02 0.0067 25.2 10.7 58 398-455 7-65 (236)
431 PF11838 ERAP1_C: ERAP1-like C 38.7 3.7E+02 0.008 25.9 20.6 109 443-556 146-261 (324)
432 KOG2471 TPR repeat-containing 38.6 4.5E+02 0.0098 26.9 11.7 105 438-544 251-381 (696)
433 PF09454 Vps23_core: Vps23 cor 38.3 1.1E+02 0.0024 21.3 4.9 50 81-132 6-55 (65)
434 PRK07003 DNA polymerase III su 38.2 4.5E+02 0.0097 29.1 11.6 46 478-525 180-226 (830)
435 PRK10941 hypothetical protein; 38.2 3.5E+02 0.0075 25.5 10.9 76 466-542 185-261 (269)
436 PF10475 DUF2450: Protein of u 38.1 3.1E+02 0.0066 26.2 9.8 51 227-283 105-155 (291)
437 smart00386 HAT HAT (Half-A-TPR 38.0 71 0.0015 17.5 4.3 14 547-560 2-15 (33)
438 PF09986 DUF2225: Uncharacteri 37.2 3.1E+02 0.0068 24.7 11.0 51 514-564 142-197 (214)
439 PF11663 Toxin_YhaV: Toxin wit 36.9 31 0.00067 27.9 2.3 28 576-603 104-131 (140)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 36.6 2.3E+02 0.0049 22.9 8.8 59 119-179 65-124 (126)
441 PRK14963 DNA polymerase III su 36.6 4.7E+02 0.01 27.4 11.5 47 478-526 177-224 (504)
442 cd08819 CARD_MDA5_2 Caspase ac 36.5 1.8E+02 0.0039 21.7 7.2 34 475-513 49-82 (88)
443 PF12926 MOZART2: Mitotic-spin 36.2 1.8E+02 0.0039 21.6 7.4 41 140-180 29-69 (88)
444 KOG0686 COP9 signalosome, subu 36.0 4.6E+02 0.0099 26.2 13.6 172 83-264 150-353 (466)
445 PF04910 Tcf25: Transcriptiona 35.7 4.5E+02 0.0098 26.1 16.8 56 227-282 110-166 (360)
446 KOG4567 GTPase-activating prot 35.5 2.4E+02 0.0051 26.9 7.9 70 412-486 263-342 (370)
447 PF10366 Vps39_1: Vacuolar sor 34.7 2.2E+02 0.0048 22.2 8.1 26 223-248 42-67 (108)
448 PF10475 DUF2450: Protein of u 34.6 3.2E+02 0.0069 26.1 9.3 53 260-318 103-155 (291)
449 KOG2659 LisH motif-containing 34.6 3.5E+02 0.0077 24.5 8.9 95 461-557 25-128 (228)
450 KOG0376 Serine-threonine phosp 34.4 1.1E+02 0.0023 31.0 6.0 52 402-455 14-66 (476)
451 KOG1308 Hsp70-interacting prot 34.3 26 0.00056 33.4 1.8 93 509-603 126-218 (377)
452 PF02184 HAT: HAT (Half-A-TPR) 33.4 99 0.0022 17.9 3.3 8 516-523 6-13 (32)
453 smart00777 Mad3_BUB1_I Mad3/BU 33.3 2.6E+02 0.0057 22.6 9.4 41 551-591 82-123 (125)
454 KOG0292 Vesicle coat complex C 32.9 7.4E+02 0.016 27.7 12.2 95 473-567 1002-1119(1202)
455 PRK09462 fur ferric uptake reg 32.6 2.5E+02 0.0054 23.4 7.4 34 513-546 33-66 (148)
456 PF11817 Foie-gras_1: Foie gra 32.1 2.9E+02 0.0063 25.6 8.4 54 502-555 183-241 (247)
457 PRK13800 putative oxidoreducta 31.7 8.4E+02 0.018 28.0 30.2 247 81-353 633-880 (897)
458 PRK13800 putative oxidoreducta 31.6 8.4E+02 0.018 28.0 29.7 255 175-455 625-880 (897)
459 COG5108 RPO41 Mitochondrial DN 31.5 2.2E+02 0.0049 30.2 7.8 75 295-372 33-115 (1117)
460 PRK11639 zinc uptake transcrip 31.3 2.7E+02 0.0059 23.9 7.5 37 198-234 38-74 (169)
461 KOG0292 Vesicle coat complex C 31.3 1.6E+02 0.0034 32.4 6.9 48 472-525 653-700 (1202)
462 PF10366 Vps39_1: Vacuolar sor 30.8 2.6E+02 0.0057 21.8 8.0 26 122-147 42-67 (108)
463 COG4259 Uncharacterized protei 30.7 2.5E+02 0.0053 21.5 6.8 32 503-536 78-109 (121)
464 PRK06645 DNA polymerase III su 30.7 6.5E+02 0.014 26.4 11.5 44 479-524 190-234 (507)
465 PRK13342 recombination factor 30.7 5.9E+02 0.013 25.8 19.5 122 424-564 173-302 (413)
466 KOG1586 Protein required for f 30.3 4.3E+02 0.0093 24.2 21.1 69 507-575 164-239 (288)
467 KOG0551 Hsp90 co-chaperone CNS 30.1 3E+02 0.0066 26.6 7.8 94 464-559 83-180 (390)
468 PF05266 DUF724: Protein of un 29.9 1.4E+02 0.0031 26.2 5.5 64 64-129 15-78 (190)
469 PHA03100 ankyrin repeat protei 29.8 6.4E+02 0.014 26.0 13.8 206 139-359 48-277 (480)
470 PRK09857 putative transposase; 29.7 4E+02 0.0087 25.5 9.0 23 507-529 250-272 (292)
471 cd07153 Fur_like Ferric uptake 29.3 1.6E+02 0.0035 23.1 5.5 46 89-135 6-51 (116)
472 PF09670 Cas_Cas02710: CRISPR- 29.2 6E+02 0.013 25.5 12.8 55 264-319 140-198 (379)
473 PF01475 FUR: Ferric uptake re 29.1 1.4E+02 0.003 23.8 5.1 46 88-134 12-57 (120)
474 COG2909 MalT ATP-dependent tra 28.4 8.8E+02 0.019 27.2 31.7 358 154-557 284-684 (894)
475 PRK11639 zinc uptake transcrip 28.0 3.6E+02 0.0077 23.2 7.7 58 111-169 18-75 (169)
476 PF05944 Phage_term_smal: Phag 27.8 3.1E+02 0.0067 22.4 6.7 31 120-150 49-79 (132)
477 PF09454 Vps23_core: Vps23 cor 27.7 1.6E+02 0.0035 20.4 4.4 30 463-492 9-38 (65)
478 PRK14960 DNA polymerase III su 27.7 7.8E+02 0.017 26.9 11.2 45 479-525 180-225 (702)
479 KOG2659 LisH motif-containing 27.6 4.7E+02 0.01 23.7 9.2 66 389-456 23-93 (228)
480 PRK13341 recombination factor 27.4 8.9E+02 0.019 26.9 17.4 38 197-234 270-307 (725)
481 PF02847 MA3: MA3 domain; Int 27.2 2.4E+02 0.0052 22.0 6.2 25 159-183 7-31 (113)
482 PF04190 DUF410: Protein of un 27.1 5.2E+02 0.011 24.1 19.0 25 359-383 89-113 (260)
483 PF07064 RIC1: RIC1; InterPro 26.8 5.3E+02 0.011 24.1 15.0 157 293-459 85-252 (258)
484 KOG0687 26S proteasome regulat 26.7 5.9E+02 0.013 24.6 14.5 116 442-559 83-208 (393)
485 COG2178 Predicted RNA-binding 26.3 4.5E+02 0.0099 23.2 10.3 18 230-247 39-56 (204)
486 PF09868 DUF2095: Uncharacteri 26.2 2.6E+02 0.0057 21.9 5.5 42 125-167 67-108 (128)
487 PF11123 DNA_Packaging_2: DNA 26.1 2.3E+02 0.005 20.2 4.7 33 134-167 12-44 (82)
488 cd07153 Fur_like Ferric uptake 26.1 2E+02 0.0044 22.5 5.6 45 191-235 6-50 (116)
489 TIGR02270 conserved hypothetic 25.9 7.1E+02 0.015 25.3 27.3 235 90-352 45-279 (410)
490 PF04781 DUF627: Protein of un 25.8 36 0.00079 26.5 1.1 21 540-560 4-24 (111)
491 PRK14956 DNA polymerase III su 25.8 7.7E+02 0.017 25.6 11.8 35 531-565 247-281 (484)
492 PF14853 Fis1_TPR_C: Fis1 C-te 25.2 2.1E+02 0.0045 18.9 6.2 26 536-561 5-30 (53)
493 COG5116 RPN2 26S proteasome re 24.8 6.9E+02 0.015 26.3 9.7 77 484-562 161-238 (926)
494 PF04090 RNA_pol_I_TF: RNA pol 24.6 4.4E+02 0.0096 23.4 7.5 58 222-280 43-101 (199)
495 KOG2062 26S proteasome regulat 24.4 9.6E+02 0.021 26.3 31.5 160 48-214 60-239 (929)
496 PRK09462 fur ferric uptake reg 24.1 4.2E+02 0.0091 22.0 7.5 59 110-169 8-67 (148)
497 PF01475 FUR: Ferric uptake re 24.0 2.1E+02 0.0046 22.7 5.3 46 189-234 11-56 (120)
498 PF12862 Apc5: Anaphase-promot 23.8 3.2E+02 0.0069 20.5 7.8 23 538-560 47-69 (94)
499 KOG4521 Nuclear pore complex, 23.6 1.2E+03 0.026 27.2 14.5 192 391-592 919-1127(1480)
500 KOG3807 Predicted membrane pro 23.5 6.7E+02 0.015 24.2 10.9 162 123-295 188-351 (556)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-76 Score=644.11 Aligned_cols=533 Identities=15% Similarity=0.205 Sum_probs=517.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437 51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW 130 (645)
Q Consensus 51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 130 (645)
+.+...+.++|+.+.|+++|+.+.. ||..+||.+|.+|++ .|++++|.++|++|...|+.||..||+.++++|+
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~-~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAK-AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 4555677899999999999999853 589999999999999 8999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
..+++..+.+++..|.+.|+.||..++|+|+.+|++.|++++|.++|++|..+|.++||.++.+|++.|++++|+++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV 290 (645)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 290 (645)
|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+||+++.+|++.|++++|.++|++|.. ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 799
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
.+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006437 371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVY 450 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 450 (645)
+++|++++|.++|+.+. .+|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++
T Consensus 435 ~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 99999999999999875 57999999999999999999999999999986 59999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006437 451 QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP 530 (645)
Q Consensus 451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 530 (645)
..+.+.|..++..++++++++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 531 NAYTYRVMLLSFCKERNIKMVKRLLQDVI-DARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 531 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
|..||+.++.+|++.|++++|.++|+.|. +.++.|+..+|+.++++|.+.|++++|.+++++|. ++||..
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~ 658 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA 658 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence 99999999999999999999999999999 78999999999999999999999999999999995 899988
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-72 Score=614.77 Aligned_cols=542 Identities=17% Similarity=0.226 Sum_probs=496.9
Q ss_pred CCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 80 FHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
.++...+|.++..+.+ .|++++|..+|++|.+.|++|+..+|..++++|.+.+.++.|.+++..+.+.|..++...+|+
T Consensus 48 ~~~~~~~n~~i~~l~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3688889999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437 160 VMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEA 239 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 239 (645)
|+.+|++.|+++.|.++|++|..||..+||.++.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437 240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE 319 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (645)
.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHH
Q 006437 320 GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALL 399 (645)
Q Consensus 320 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li 399 (645)
|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.+. .||..+|+.+|
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li 361 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMI 361 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437 400 SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (645)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
+|.++|++|.+ +|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.
T Consensus 442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999864 6889999999999999999999999999986 578888888877777766666666666666555
Q ss_pred HCCC------------------------------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHh
Q 006437 560 DARI------------------------------ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGL 609 (645)
Q Consensus 560 ~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~ 609 (645)
+.|+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||.. ++..+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHH
Confidence 5444 3456667777777777777777777777777777777777 44444
Q ss_pred hh-----cccCCccccccccccccccCCC
Q 006437 610 LS-----DETMTPVSLFDGFVPCERRAGN 633 (645)
Q Consensus 610 L~-----~~~~~~~~~~~~~~~~~~~~~~ 633 (645)
|. |...++.++++.+.+.....|+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 44 6666777777777655554444
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-70 Score=584.91 Aligned_cols=516 Identities=16% Similarity=0.213 Sum_probs=374.9
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC-VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
++...|..++..+.+ .|++++|.++|++|.+.|+ +++..++..++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 355666666666666 6777777777777766664 34555566666667777777777777666653 66777777
Q ss_pred HHHHHHhcCCHhHHHHHHhhcC----CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 160 VMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
++.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 7777777777777777776664 466677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhchHHHHHHHHhcCChhHHHHHH
Q 006437 236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ--NGCSPNVVTYTSLIKGFMEAKMFSIAFSFL 313 (645)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (645)
+++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777667777777777777777777777777777777754 456677777777777777777777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHh---cCCCCC
Q 006437 314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVC---GLEVEA 390 (645)
Q Consensus 314 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~---~~~~~~ 390 (645)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++ ..+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777666663 335666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777666777777777777777777777777777777776677777777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-----------------------cCCHHHHHHHHHHHhhCC
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE-----------------------GGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~m~~~~ 527 (645)
+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ .+..++|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777776654321 123467999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+.|++++.+. .++|..++++|...|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999988889999999999999998888889999999999988432 368999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-69 Score=578.99 Aligned_cols=507 Identities=14% Similarity=0.162 Sum_probs=480.8
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006437 55 STLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM 134 (645)
Q Consensus 55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 134 (645)
..+.+.|++..|+++|+++.......++...++.++..+.+ .|..++|..+++.|.. |+..+|+.++.+|++.|+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-QRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-CCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 44557799999999999998876667888999999999999 8999999999999975 899999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC----CCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437 135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 68999999999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006437 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT--LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSP 288 (645)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 288 (645)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS 368 (645)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 368 (645)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|+.|+..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437 369 TVCLSGRFSLLPKLVCGL---EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE 445 (645)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 445 (645)
+|++.|++++|.++|+.+ +..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999554 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHH----hcC-------------------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLI----EAG-------------------RCHKAIQLFRRAIVEKYPLDVVSYTV 502 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 502 (645)
|.+++++|.+.|+.||..+|++++..|. +++ ..+.|..+|++|.+.|+.||..+|+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 9999999999999999999999987643 222 23679999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYH 568 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 568 (645)
++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..++++|.+.|+.|+..
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9998889999999999999999888899999999999998543 468999999999999999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-67 Score=562.41 Aligned_cols=512 Identities=16% Similarity=0.215 Sum_probs=476.5
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVG-CVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
.+..+|+.++..+.+ .|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 85 ~~~~~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 466789999999999 899999999999998864 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437 160 VMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEA 239 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 239 (645)
|+++|++.|++++|.++|++|..||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437 240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE 319 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (645)
.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.. +|..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999974 69999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHH
Q 006437 320 GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALL 399 (645)
Q Consensus 320 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li 399 (645)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|+++|++++|.++|+.+. .||..+||.||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI 398 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALI 398 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998875 68999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCH
Q 006437 400 SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM-NNPAVNAHVHTAIVDRLIEAGRC 478 (645)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 478 (645)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999987 58999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQD 557 (645)
Q Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 557 (645)
++|.++++++ ++.|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..|+..|++.|++++|.++++.
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999875 4679999999999999999999999999999976 566 577999999999999999999999999
Q ss_pred HHHCCCCcC-HHHHHHHHH---HHH--------hcCChhHHHHHHHHHHHCCCCCChh
Q 006437 558 VIDARIELD-YHTSIRLTK---FIF--------KFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 558 ~~~~~~~~~-~~~~~~l~~---~~~--------~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
|.+.|+... ..+|..+.. .+. ...-++...++..+|.+.|..|+..
T Consensus 554 m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 554 LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999987633 222321110 000 0111344567889999999999866
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-61 Score=516.65 Aligned_cols=470 Identities=14% Similarity=0.167 Sum_probs=445.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC----CCChhhHHH
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG-FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ----LPNFLSFNI 190 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 190 (645)
..+..+++.+|..|.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++.+.|.+++..+. .||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999998764 78999999999999999999999999998875 689999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 006437 191 ALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRR 270 (645)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (645)
++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999964 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 271 LDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDG 350 (645)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (645)
.+.+.+++..+.+.|+.||..+|+++|.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964 5899999999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH---hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006437 351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV---CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN 427 (645)
Q Consensus 351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 427 (645)
|.+.|+.||..||+.++.+|++.|+++.|.+++ .+.+..||..+|+.++.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 999999999999999999999999999999988 4457899999999999999999999999999999964 789
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV-EKYPLDVVSYTVAIRG 506 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 506 (645)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA 586 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 586 (645)
|++.|++++|.+++++| ++.|+..+|+.|+.+|+..|+++.|..+++++.+.++. +..+|..|++.|++.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence 99999999999999876 47899999999999999999999999999999765543 578999999999999999999
Q ss_pred HHHHHHHHHCCCCCC
Q 006437 587 VNQLVEMCNLGLIPD 601 (645)
Q Consensus 587 ~~~~~~m~~~g~~p~ 601 (645)
.+++++|++.|+++.
T Consensus 548 ~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 548 AKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHcCCccC
Confidence 999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-32 Score=305.58 Aligned_cols=557 Identities=12% Similarity=0.072 Sum_probs=450.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437 51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW 130 (645)
Q Consensus 51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 130 (645)
..+..++...++++.|...+..+....+ .+...+..+...+.+ .|++++|...|+++.+.. +.+...+..+...+.
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDP--DDPAALSLLGEAYLA-LGDFEKAAEYLAKATELD-PENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556677789999999999988876654 578888889999999 899999999999988764 446677888888899
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHH
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDV 207 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~ 207 (645)
..|++++|.+.++.+.+.. +........++..+.+.|++++|.++++++. +.+..++..+...+...|++++|.+.
T Consensus 409 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred hCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999988765 3344566678888999999999999998875 45667888899999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437 208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS 287 (645)
Q Consensus 208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 287 (645)
|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 99988764 3355677788888999999999999999998765 3467788889999999999999999999987654 4
Q ss_pred CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLL 367 (645)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 367 (645)
.+...+..+...+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 466778888899999999999999999988753 4467788889999999999999999999988753 34566788888
Q ss_pred HHHHhcCCcccHHHHHhc-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437 368 STVCLSGRFSLLPKLVCG-LEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE 445 (645)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 445 (645)
..+...|++++|.+.++. ....| +...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 889999999999998844 23334 47788888999999999999999999998875 4566777888888889999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
|.+.++.+...++.. .++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+
T Consensus 722 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999988876554 566778888999999999999999988764 56788888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhh
Q 006437 526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWR 605 (645)
Q Consensus 526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~ 605 (645)
.. +++..++..+...+...|+ .+|+.+++++.+..+. ++..+..+...+...|++++|.+.++++.+.+..-...+.
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 53 4477888889999999999 8899999998876554 6677888888899999999999999999876543222222
Q ss_pred HHH-hhh--cccCCcccccccc
Q 006437 606 KLG-LLS--DETMTPVSLFDGF 624 (645)
Q Consensus 606 ~~~-~L~--~~~~~~~~~~~~~ 624 (645)
.+. .+. |+..++.+.++.+
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 222 222 7766666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-32 Score=303.89 Aligned_cols=560 Identities=13% Similarity=0.083 Sum_probs=472.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437 51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW 130 (645)
Q Consensus 51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 130 (645)
......+...++++.|...|+.+....+ .+...+..+...+.+ .|+++.|...++.+.... +.+...+..+...+.
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 374 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLR-LGRVDEAIATLSPALGLD-PDDPAALSLLGEAYL 374 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445667788999999999999877654 467778888888888 899999999999998765 457788899999999
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHH
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDV 207 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~ 207 (645)
+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+... +.+......++..+.+.|++++|.++
T Consensus 375 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999998764 4567788889999999999999999998875 23345667778889999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437 208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS 287 (645)
Q Consensus 208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 287 (645)
++.+.... +.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 99998753 4567789999999999999999999999998764 3456778888999999999999999999998764 4
Q ss_pred CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLL 367 (645)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 367 (645)
.+..++..+...+...|+.++|...++++.+.+. .+...+..+...+...|++++|..+++.+.+. .+.+..++..+.
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 4678889999999999999999999999987643 35667788899999999999999999999875 355678899999
Q ss_pred HHHHhcCCcccHHHHHhcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006437 368 STVCLSGRFSLLPKLVCGL-EV-EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE 445 (645)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 445 (645)
..+...|++++|...++.. .. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998543 22 3356788889999999999999999999998763 3457788899999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
|.++++.+....+. +...+..+...+.+.|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+.++++.+
T Consensus 688 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 688 AKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999888765 67778889999999999999999999998875 5667888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--
Q 006437 526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM-- 603 (645)
Q Consensus 526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 603 (645)
.. +.+...+..+...|...|++++|.++++++.+..+. ++..+..++..+...|+ ++|++.++++... .|+..
T Consensus 765 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~ 839 (899)
T TIGR02917 765 TH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAI 839 (899)
T ss_pred hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHH
Confidence 43 457888999999999999999999999999987654 78899999999999999 8899999999864 44443
Q ss_pred hhHHHhhh---cccCCccccccccccccc
Q 006437 604 WRKLGLLS---DETMTPVSLFDGFVPCER 629 (645)
Q Consensus 604 w~~~~~L~---~~~~~~~~~~~~~~~~~~ 629 (645)
|..++.+. |+..++.+.++...+..+
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55555544 777777777777666544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.8e-22 Score=227.69 Aligned_cols=530 Identities=15% Similarity=0.097 Sum_probs=350.0
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHH----------------HHHHHHHHhhcCChhHHHHHHHHHHHcCCCC
Q 006437 54 HSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSF----------------DHMISVVTRLTGRFETVRGIVGELARVGCVI 117 (645)
Q Consensus 54 ~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~ 117 (645)
..++...++.+.|.+.++.+.+..+ .++... -.+...+.+ .|++++|...|+.+.... +|
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~-~g~~~eA~~~~~~~l~~~-p~ 144 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTTMLLSTPEGRQALQQARLLAT-TGRTEEALASYDKLFNGA-PP 144 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHhcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHccCC-CC
Confidence 3555678899999999988776554 233322 222335666 789999999999887654 34
Q ss_pred CHHH-HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-----------
Q 006437 118 KAQT-FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF----------- 185 (645)
Q Consensus 118 ~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------- 185 (645)
+... ...........|+.++|++.++++.+.. +.+...+..+..++...|+.++|++.|+++.....
T Consensus 145 ~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 145 ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 4322 1111122234588899999999988764 55677788888888888999999888876531100
Q ss_pred ------------hhHH----------------------------------HHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437 186 ------------LSFN----------------------------------IALCNLCKLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 186 ------------~~~~----------------------------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
..+. .....+...|++++|+..|++..+.. +.+
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~ 302 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKD 302 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 0000 11233556788899999998888763 236
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS-VNAW------------TVLIDGFRRLRRLDMAGYLWEKMVQNGC 286 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~ 286 (645)
...+..+..++.+.|++++|+..|++..+...... ...+ ......+.+.|++++|.+.|++..+..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~- 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD- 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 77888888889999999999999998887543221 1111 122345678889999999999888753
Q ss_pred CCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--------------------------------
Q 006437 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC-------------------------------- 334 (645)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-------------------------------- 334 (645)
+.+...+..+...+...|++++|++.|+++.+.... +...+..+...
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 335566777788888899999999999888765321 22333333332
Q ss_pred ----------HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCC-CHHHHHHHHHHH
Q 006437 335 ----------LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEA-DLVVYNALLSYF 402 (645)
Q Consensus 335 ----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~ 402 (645)
+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++.. ...| +...+..+...+
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334555566666665555432 113344455555566666666666555332 1122 233333333344
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHh---------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 403 CKAGFPNQAVKLYNTMLDKGFTPDNY---------SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
...++.++|+..++.+......++.. .+..+...+...|+.++|.++++. .+ .+...+..+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHH
Confidence 45556666666555543221111111 112334456667777777777662 22 25556778889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
+.|++++|...|+++.+.. |.+...+..++..|...|++++|++.++...+ ..| +..++..+..++...|++++|.
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999875 55788999999999999999999999998876 445 5667777888889999999999
Q ss_pred HHHHHHHHCCCCc-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC
Q 006437 553 RLLQDVIDARIEL-----DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN-LGLIP 600 (645)
Q Consensus 553 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p 600 (645)
++++++....... +...+..+...+.+.|+.++|++.+++... .|+.|
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999998754322 235667778889999999999999988753 34543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.7e-22 Score=227.90 Aligned_cols=525 Identities=12% Similarity=0.004 Sum_probs=347.2
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHH------------
Q 006437 55 STLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTF------------ 122 (645)
Q Consensus 55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------------ 122 (645)
+.....++.+.|.+.+..+....+ .++..+..++..+.+ .|+.++|...++++.+.. +.+....
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~-~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLR-QGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCc
Confidence 344577899999999999877655 578889999999999 899999999999998876 3333322
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHH
Q 006437 123 ----LLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTF-ARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCN 194 (645)
Q Consensus 123 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~ 194 (645)
....+.+.+.|++++|++.|+.+.+.+ +++.. ....+.......|+.++|++.|+++. +.+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333456888999999999999998764 44432 22222222334699999999999886 4455677888888
Q ss_pred HHhcCCcchHHHHHHHHHHCCC------------------C--------------CCHhhH-------------------
Q 006437 195 LCKLNDVSNVKDVIGMMVRKGF------------------Y--------------PNVRMF------------------- 223 (645)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~------------------- 223 (645)
+...|+.++|++.++++.+... . |+....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998754321 0 110000
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hchH----
Q 006437 224 --EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV---VTYT---- 294 (645)
Q Consensus 224 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~---- 294 (645)
......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |+. ..|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHH
Confidence 011344567789999999999988764 3367888889999999999999999999988653 332 1121
Q ss_pred --------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006437 295 --------SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSL 366 (645)
Q Consensus 295 --------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (645)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 123456788999999999999988632 345667778889999999999999999988743 2234455555
Q ss_pred HHHHHhcCCcccHHHHHhcCCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 367 LSTVCLSGRFSLLPKLVCGLEVEA-----------DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435 (645)
Q Consensus 367 l~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 435 (645)
...+. .++.++|...++.+.... ....+..+...+...|++++|++.|++..+.. +-+...+..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55553 456677777765432110 01234455666778888888888888887753 224556667777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----------------------- 492 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------- 492 (645)
.+.+.|++++|...++++++..+. +...+..+...+...++.++|...++.+....
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 888888888888888888776554 33333333344455555555555555432211
Q ss_pred ----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 493 ----------------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 493 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
.+.+...+..+...+.+.|++++|+..|++..+ ..| +...+..+...+...|++++|.+.+
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 123344445555555555666666666665555 233 4455555555555556666666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
+.+.+.... +...+..+..++.+.|++++|.++++++..
T Consensus 661 ~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 661 AKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 555443222 344445555555556666666666665554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.5e-21 Score=209.79 Aligned_cols=217 Identities=6% Similarity=-0.059 Sum_probs=166.3
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437 51 HIVHSTLLN-CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY 129 (645)
Q Consensus 51 ~~~~~~l~~-~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 129 (645)
......+.. .|+++.|+..|+.+....| .++.++..+..++.. .|++++|+..+++..+.. |+...|..++..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~-~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRH-FGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 333333434 4899999999999988766 578899999999999 899999999999998874 5555555544333
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHH--------HHhcCCHhHHHHHHhhcCCCC--hhhHHH-HHHHHHhc
Q 006437 130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDV--------LFKIGRVDLGIKVLKETQLPN--FLSFNI-ALCNLCKL 198 (645)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-ll~~~~~~ 198 (645)
+++.+|..+++++.+.. +-+..++..+... |.+.++..++++ .+...|+ ..+... +...|.+.
T Consensus 122 ---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 89999999999999874 4456677666666 777777777777 3333343 444444 48899999
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437 199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK-MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL 277 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 277 (645)
|++++|++++.++.+.+. .+..-...+..+|.. .++ +++..+++. .++.+...+..+.+.|.+.|+.++|.++
T Consensus 196 ~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999863 345556777778887 366 777777553 2346888999999999999999999999
Q ss_pred HHHHHHc
Q 006437 278 WEKMVQN 284 (645)
Q Consensus 278 ~~~m~~~ 284 (645)
++++...
T Consensus 270 L~~~~~~ 276 (987)
T PRK09782 270 LIENKPL 276 (987)
T ss_pred HHhCccc
Confidence 9987653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.9e-18 Score=186.12 Aligned_cols=505 Identities=11% Similarity=0.023 Sum_probs=327.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV 176 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 176 (645)
.|++++|...|++..+.. +-+..++..+.+.|...|+.++|+...++..+.. +.|...+..+ .. .++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccChhHHHH
Confidence 599999999999998876 4467889999999999999999999999999874 3344444444 22 2999999999
Q ss_pred HhhcC--CC-ChhhHHHHHHH--------HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHH
Q 006437 177 LKETQ--LP-NFLSFNIALCN--------LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL-LNCFCKMGRIAEAYQLLG 244 (645)
Q Consensus 177 ~~~~~--~~-~~~~~~~ll~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~ 244 (645)
++++. .| +...+..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.+++++|++++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99986 33 34455444444 5554 55666665 4333334455555555 899999999999999999
Q ss_pred HHHHcCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCC-
Q 006437 245 LMITLGTSLSVNAWTVLIDGFRR-LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHA- 322 (645)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~- 322 (645)
.+.+.++ .+......|..+|.. .++ +++..++.. .++.+...+..+...|.+.|+.++|..+++++...-..
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 356667777778887 466 888888553 22357888999999999999999999998876432100
Q ss_pred CCHhhH------------------------------HHHHHH--------------------------------------
Q 006437 323 PDLVFH------------------------------NVLIDC-------------------------------------- 334 (645)
Q Consensus 323 ~~~~~~------------------------------~~ll~~-------------------------------------- 334 (645)
|+..++ -.++..
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 000000 000111
Q ss_pred -------------------------HHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCCccc---HHHH--
Q 006437 335 -------------------------LSKMGSYDDALDVYDGLLEL-K-LVPDSYTFCSLLSTVCLSGRFSL---LPKL-- 382 (645)
Q Consensus 335 -------------------------~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~---a~~~-- 382 (645)
..+.|+.++|.++|...... + -.++......++..|.+.+.... +..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 22344555555555555441 1 12233444466666666655221 1111
Q ss_pred -----------------------H-hcCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 383 -----------------------V-CGLEV-EA--DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435 (645)
Q Consensus 383 -----------------------~-~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 435 (645)
+ ...+. .+ +...|..+..++.. +++++|+..+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 1 11111 22 45566666666655 6777788877776654 355444334444
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE 515 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 515 (645)
.+...|++++|...++.+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.....+.|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMS--NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 456778888888888876554322 2334556667777888888888888777654 2333333333344445588888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
|...+++..+ ..|+...+..+..++.+.|++++|...+++..+..+. ++..+..+..++...|+.++|++.+++..+
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888776 5577777777777788888888888888888776655 667777777778888888888888887774
Q ss_pred CCCCCChh--hhHHHhhh---cccCCcccccccccccc
Q 006437 596 LGLIPDEM--WRKLGLLS---DETMTPVSLFDGFVPCE 628 (645)
Q Consensus 596 ~g~~p~~~--w~~~~~L~---~~~~~~~~~~~~~~~~~ 628 (645)
..|+.. |..++.+. |+..++...++...+..
T Consensus 672 --l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 --GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 345544 33333333 55555555555544433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.7e-20 Score=175.95 Aligned_cols=432 Identities=15% Similarity=0.138 Sum_probs=277.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL 198 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 198 (645)
...+.+...+.|++.+|.+-....-+.+ +.+....-.+-..+.+..+.+....--.... +.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4455666667788888877666554432 2222233333344555555554443222222 33345777788888888
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh-HHHHHHHHHhcCCHHHHHHH
Q 006437 199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA-WTVLIDGFRRLRRLDMAGYL 277 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~ 277 (645)
|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+. .|+... .+.+-......|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888887763 124667888888888888888888888877764 444433 33344555567888888888
Q ss_pred HHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 278 WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKL 356 (645)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (645)
|.+..+.. +--...|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.++.|...|.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 77776542 123467788887888888888888888887764 333 345666777777777788887777766652
Q ss_pred CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHH
Q 006437 357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLR 435 (645)
Q Consensus 357 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 435 (645)
.|+ ..+.+..+...|..+|..+-|+..|++.++. .|+ ...|+.|..
T Consensus 282 rpn-------------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 282 RPN-------------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLAN 328 (966)
T ss_pred CCc-------------------------------chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHH
Confidence 222 2334444455566666777777777666653 333 455666777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTE 514 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 514 (645)
++-..|++.+|.+.|.+.....+. .....+.|...|...|.++.|..+|....+- .|. ....|.|...|.+.|+++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHH
Confidence 776677777777777766665544 4555666677777777777777777766653 233 455666777777777777
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 515 EAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 515 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
+|+..|++..+ +.|+ ...|+.+...|-..|+++.|.+.+.+++..++. =...++.|...|-.+|+..+|++-+++.
T Consensus 406 ~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 406 DAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 77777777766 6664 456677777777777777777777766664433 2456666777777777777777777776
Q ss_pred HHCCCCCChh
Q 006437 594 CNLGLIPDEM 603 (645)
Q Consensus 594 ~~~g~~p~~~ 603 (645)
+ .++||..
T Consensus 483 L--klkPDfp 490 (966)
T KOG4626|consen 483 L--KLKPDFP 490 (966)
T ss_pred H--ccCCCCc
Confidence 6 3555543
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6e-19 Score=177.44 Aligned_cols=566 Identities=13% Similarity=0.078 Sum_probs=311.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006437 63 DLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAF 142 (645)
Q Consensus 63 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 142 (645)
.+.|...|....++.+ +|+..+---..+... .+++..|+.+|.........--++....+-.++++.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~yn-kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYN-KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhc-cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 5778888888777654 344333222222233 5788888888888655432222222333445667778888888888
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437 143 DEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF 216 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 216 (645)
+...+.+ +.++.++-.|.-.-....+ +..+..++...- ..|++..+.|.+-|...|+++.+.++...+.....
T Consensus 223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 8877653 2223333222222222222 344445544432 45667777777777778888888877777765421
Q ss_pred C--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchH
Q 006437 217 Y--PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYT 294 (645)
Q Consensus 217 ~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 294 (645)
. .-...|-.+.++|-..|++++|...|-+..+....--+..+--+...|.+.|+++.+...|+.+.... +-+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 1 11234666777788888888888887766654322112334456677778888888888887777542 22344555
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHH
Q 006437 295 SLIKGFMEAK----MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLL----ELKLVPDSYTFCSL 366 (645)
Q Consensus 295 ~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 366 (645)
.+-..|...+ ..+.|..++....+.- ..|...|-.+...+.. ++...++..|..+. ..+-.+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5555555553 3455555555555442 2345555555444443 33333355555433 34445667777777
Q ss_pred HHHHHhcCCcccHHHHHhcC-C-----CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHH
Q 006437 367 LSTVCLSGRFSLLPKLVCGL-E-----VEAD------LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL 433 (645)
Q Consensus 367 l~~~~~~~~~~~a~~~~~~~-~-----~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l 433 (645)
...+...|+++.|...|... + ..++ +.+--.+...+-..++++.|.+.|..+.+. .|. ...|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 77777777777777777221 1 1111 111222334444556777777777777664 233 2233333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHh---
Q 006437 434 LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLE--- 509 (645)
Q Consensus 434 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 509 (645)
.......+...+|...+.......-. ++..++.+...+.+...+.-|.+-|..+.+.-. .+|+.+.-+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 32222345666666666666554322 444555555566666666666655554443311 1344444444443321
Q ss_pred ---------cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437 510 ---------GGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK 579 (645)
Q Consensus 510 ---------~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (645)
.+..++|+++|.+.+. ..| |...-+.+.-.++..|++..|..+|.++++...+ ...+|..+..+|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHH
Confidence 1245556666666665 233 5556666666666666666666666666654332 34556666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhhHHHhhh---cccCCccccccccccccccCCCcchhhccCC
Q 006437 580 FHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS---DETMTPVSLFDGFVPCERRAGNANHLLLNGG 642 (645)
Q Consensus 580 ~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (645)
+|++..|+++|+.....-.+-+.. ..++.|. .+.....+..+.+.+.....|.+..|.||.|
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~-~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRS-EVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 666666666666665554433333 3555555 2333334444444444555556666665544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3e-20 Score=187.22 Aligned_cols=302 Identities=14% Similarity=0.079 Sum_probs=216.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCH
Q 006437 265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD---LVFHNVLIDCLSKMGSY 341 (645)
Q Consensus 265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 341 (645)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666542 22344556666666666666666666666655422111 13455666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006437 342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK 421 (645)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 421 (645)
++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.
T Consensus 124 ~~A~~~~~~~l~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 124 DRAEELFLQLVDEG---------------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHHHHHHHcCC---------------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 77777777766531 223455666777777777777777777777765
Q ss_pred CCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 006437 422 GFTPDN----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV 497 (645)
Q Consensus 422 ~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 497 (645)
+..+.. ..+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 432221 23445666777888888888888888876544 4566777888899999999999999998876422224
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI 577 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (645)
.+++.++.+|.+.|++++|...++++.+ ..|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 6688899999999999999999999988 4677777788899999999999999999998875 47778888888776
Q ss_pred Hh---cCChhHHHHHHHHHHHCCCCCChhhh
Q 006437 578 FK---FHSSSSAVNQLVEMCNLGLIPDEMWR 605 (645)
Q Consensus 578 ~~---~g~~~~A~~~~~~m~~~g~~p~~~w~ 605 (645)
.. .|+.++++.++++|.+++++|++.|.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 64 56899999999999999998888854
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6e-19 Score=168.54 Aligned_cols=440 Identities=18% Similarity=0.151 Sum_probs=333.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006437 87 DHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFK 166 (645)
Q Consensus 87 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 166 (645)
..+..-+.+ .|++.+|.+.-...-... +.+......+-..+.+..+++...+--....+.. +.-..+|+.+...+-.
T Consensus 52 l~lah~~yq-~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 52 LELAHRLYQ-GGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHh-ccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 345555566 789999987665554443 3344455555556666666666555444444432 4457889999999999
Q ss_pred cCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHH
Q 006437 167 IGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-FEILLNCFCKMGRIAEAYQL 242 (645)
Q Consensus 167 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~ 242 (645)
.|++++|+.+++.+. +..+..|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999876 345568999999999999999999999998886 465543 33445555667999999999
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437 243 LGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN-VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH 321 (645)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (645)
+.+.++... -=...|+.|...+-..|+...|+..|++..+. .|+ ...|..|-..|-..+.+++|...+.+....
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 998887532 12457888888999999999999999998875 354 467888999999999999999999887764
Q ss_pred CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 006437 322 AP-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLS 400 (645)
Q Consensus 322 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 400 (645)
.| ....+..+...|...|.++.|+..|++.++. .|+ =...|+.|..
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~-------------------------------F~~Ay~Nlan 328 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN-------------------------------FPDAYNNLAN 328 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC-------------------------------chHHHhHHHH
Confidence 34 3566777778888999999999999998874 222 1456777888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006437 401 YFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHK 480 (645)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 480 (645)
++-..|++.+|...|+...... +......+.|...+...|.+++|..+|....+-.+. -...++.|...|-+.|++++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHH
Confidence 8888888888888888877652 233566777888888888888888888888776554 44567788888889999999
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 481 AIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 481 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
|..-+++.+.. .|+ ...|+.+...|...|+.+.|++.+.+... +.|. ...++.|...|...|+..+|++-++..
T Consensus 407 Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 407 AIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 99999988875 365 67888889999999999999999988887 6674 567888888999999999999999888
Q ss_pred HHCCCCcCHHHHHHHHHH
Q 006437 559 IDARIELDYHTSIRLTKF 576 (645)
Q Consensus 559 ~~~~~~~~~~~~~~l~~~ 576 (645)
.+..++. +..|-.++.+
T Consensus 483 LklkPDf-pdA~cNllh~ 499 (966)
T KOG4626|consen 483 LKLKPDF-PDAYCNLLHC 499 (966)
T ss_pred HccCCCC-chhhhHHHHH
Confidence 8755442 3344444443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.9e-17 Score=175.57 Aligned_cols=425 Identities=12% Similarity=0.012 Sum_probs=227.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL 198 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 198 (645)
+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++... +.+...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344455666677777777777776654 4566666677777777777777777776654 33445666666777777
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006437 199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLW 278 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 278 (645)
|++++|+.-|......+...+. ....++..+.. ..+........+.. +++...+..+.. |......+....-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 7777777666555433211111 11111111111 11122222222211 111122222222 11111111111111
Q ss_pred HHHHHcCCCCCh-hchHHHHHHH---HhcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 279 EKMVQNGCSPNV-VTYTSLIKGF---MEAKMFSIAFSFLDMLESEG-HAP-DLVFHNVLIDCLSKMGSYDDALDVYDGLL 352 (645)
Q Consensus 279 ~~m~~~~~~~~~-~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (645)
....+ ..+.. ..+..+...+ ...+++++|...|+...+.+ ..| ....+..+...+...|++++|+..+++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 01110 1111111111 12356777777777776653 122 33455666666677777777777777766
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 006437 353 ELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVG 432 (645)
Q Consensus 353 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 432 (645)
+. .|+ ....|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 359 ~l--~P~-------------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 359 EL--DPR-------------------------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred Hc--CCC-------------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 53 121 23344555555666677777777777666542 223555666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437 433 LLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR 512 (645)
Q Consensus 433 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 512 (645)
+...+...|++++|...|++.+...+. +...+..+..++.+.|++++|...|++.++.. +.+...|+.+...+...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 666666777777777777777666554 45556666667777777777777777766542 3346666777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437 513 TEEAYILYSQMKHIAVPPNA-Y-------TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS 584 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 584 (645)
+++|+..|++..+ +.|+. . .++..+..+...|++++|.+++++..+.++. +...+..++..+.+.|+++
T Consensus 483 ~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 483 FDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHH
Confidence 7777777777665 22321 1 1111112223356777777777776665433 3445666777777777777
Q ss_pred HHHHHHHHHHHC
Q 006437 585 SAVNQLVEMCNL 596 (645)
Q Consensus 585 ~A~~~~~~m~~~ 596 (645)
+|++.|++..+.
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.7e-19 Score=179.30 Aligned_cols=307 Identities=17% Similarity=0.108 Sum_probs=227.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhchHHHHHHHHhc
Q 006437 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN---VVTYTSLIKGFMEA 303 (645)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 303 (645)
...+...|++++|...|..+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777888887777654 23556777777777888888888888877776421111 24566777788888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437 304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 383 (645)
|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 88888888888887652 3356677888888888888888888888887643211100
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437 384 CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH 463 (645)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (645)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...++.....
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 001234456667778888888988888887753 2345567777788888999999999999888776554456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC 543 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 543 (645)
+++.++.+|.+.|++++|.+.++++.+.. |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhh
Confidence 67888899999999999999999988764 6666778888999999999999999999887 4688888888887776
Q ss_pred h---cCCHHHHHHHHHHHHHCCCCcCHH
Q 006437 544 K---ERNIKMVKRLLQDVIDARIELDYH 568 (645)
Q Consensus 544 ~---~g~~~~a~~~~~~~~~~~~~~~~~ 568 (645)
. .|+.+++..+++++.+.++.|++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4 458889999999998877766655
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=2.8e-17 Score=150.47 Aligned_cols=433 Identities=15% Similarity=0.184 Sum_probs=286.7
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCh-HHHHHHHHHHhhCCCCCCHHhHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRI--YWRGEMY-GMVLEAFDEMGRFGFTPNTFARN 158 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~ 158 (645)
++++-|.|+...+. |...++.-+|+.|++.|++.+...-..+++. |....++ -.-.+.|-.|...| +.+..+|
T Consensus 115 ~V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKMISS--REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hhcchhHHHHHHhh--cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 35566777777766 8899999999999999998888876666653 3333333 23356666677666 4444454
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE 238 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 238 (645)
+.|...+ ++-+..+....+|.++|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-..+
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 3454433 555666777889999999999999999999999999888788999999999987654433
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhH-HHHHH
Q 006437 239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDM----AGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSI-AFSFL 313 (645)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~ 313 (645)
.+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 7899999999999999999999999999998765 56788899999999999999999999998887754 44444
Q ss_pred HHHHh----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCcccHHHH
Q 006437 314 DMLES----EGHAP----DLVFHNVLIDCLSKMGSYDDALDVYDGLLELK---LVPDSYTFCSLLSTVCLSGRFSLLPKL 382 (645)
Q Consensus 314 ~~~~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~ 382 (645)
.++.. +.++| |...|...+..|.+..+.+-|.++..-+.... ..++.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~---------------------- 394 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD---------------------- 394 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH----------------------
Confidence 44433 22333 44566777888888889888888876655321 01110
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 006437 383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA 462 (645)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (645)
.....-|..+....|+....+.....|+.|.-.-+-|+..+...++++..-.+.++-.-+++..++..|.....
T Consensus 395 ------~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 395 ------QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 01123455666777777778888888888887777778888888888888888888888888877776654444
Q ss_pred HHHHHHHHHHHhcC-CH--------------------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 463 HVHTAIVDRLIEAG-RC--------------------HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYS 521 (645)
Q Consensus 463 ~~~~~l~~~~~~~g-~~--------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 521 (645)
....-++..+++.. .. +.....-.++.+.. ......+...-.+.+.|+.++|.+++.
T Consensus 469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 33333333333322 00 00000111122221 233344445555555566666666555
Q ss_pred HHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 522 QMKHIA----VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 522 ~m~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
.+.+.+ ..|......-+++.....++...|...++.|...+
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 553322 11222223344444445555555555555554443
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.4e-16 Score=160.72 Aligned_cols=536 Identities=12% Similarity=0.050 Sum_probs=382.7
Q ss_pred HHHhcCCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 006437 55 STLLNCPSDLIALSFFIWCAK-QRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWR-- 131 (645)
Q Consensus 55 ~~l~~~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 131 (645)
.+....+++..|+.+|..+.. .|.+.+|+.+- +-..+.+ -++.+.|...|++..+.. +.+..++..|.-.-..
T Consensus 172 ~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~k-l~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWK-LGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHh-ccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence 344467899999999988655 55666665332 2245566 689999999999998875 2344444444333222
Q ss_pred -cCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCcchH
Q 006437 132 -GEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPN------FLSFNIALCNLCKLNDVSNV 204 (645)
Q Consensus 132 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a 204 (645)
...+..+++.+...-... +-++.+.+.|...|.-.|++..+..+...+...+ ..+|-.+.++|...|++++|
T Consensus 248 d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 245667777777766554 5688899999999999999999999988765222 34588899999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----CHHHHHHHHHH
Q 006437 205 KDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR----RLDMAGYLWEK 280 (645)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~ 280 (645)
...|.+..+..-.-....+.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 9999888776422223445567899999999999999999998863 445667777777777764 45667777776
Q ss_pred HHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 006437 281 MVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDML----ESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL-- 354 (645)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 354 (645)
....- +.|...|-.+...+.... ...++..|... ...+-.+.....|.+...+...|+++.|...|......
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 66542 446777777766665544 44446666543 45555678888999999999999999999999988764
Q ss_pred -CCCCCH------hhHHHHHHHHHhcCCcccHHHHHhcC-CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006437 355 -KLVPDS------YTFCSLLSTVCLSGRFSLLPKLVCGL-EVEADLV-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP 425 (645)
Q Consensus 355 -~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 425 (645)
...++. .+--.+...+-..++.+.|.+++... ...|+.+ .|--+.......+...+|...++...+.. ..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 122333 12333444555667888888888442 2344433 23333322233467788888888877643 22
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCC
Q 006437 426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNN-PAVNAHVHTAIVDRLIE------------AGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~ 492 (645)
+...++.+...+.....+..|.+-|+.+.+.- ..+|+++.-+|.+.|.+ .+..++|+++|.+.+...
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445556777777878887776666552 23577777778776653 245788999999988765
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHH
Q 006437 493 YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID-ARIELDYHTSI 571 (645)
Q Consensus 493 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 571 (645)
|-|...-|-+.-.++..|++.+|..+|.+..+.. .-+..+|..+...|...|++..|+++|+...+ ....-++.+..
T Consensus 643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred -cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 5577888888888999999999999999999864 34567888999999999999999999998875 44455788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 572 RLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 572 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.|.+++.+.|++.+|.+.+..... ..|...
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~--~~p~~~ 750 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARH--LAPSNT 750 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--hCCccc
Confidence 999999999999999998777764 455444
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.3e-16 Score=169.26 Aligned_cols=425 Identities=13% Similarity=0.008 Sum_probs=285.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437 86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF 165 (645)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (645)
+......+.+ .|+++.|+..|++.... .|+...|..+..+|.+.|++++|++.++..++.. +.+..++..+..+|.
T Consensus 130 ~k~~G~~~~~-~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYR-NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4445556667 79999999999998876 4778889999999999999999999999999875 456788999999999
Q ss_pred hcCCHhHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437 166 KIGRVDLGIKVLKETQLP---NFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQL 242 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 242 (645)
..|++++|+..|...... +......++..+.. ..+........+.. +++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999888654321 11111122211111 12223333333321 122222222222 2221111111111
Q ss_pred HHHHHHcCCCcCH-HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-ChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437 243 LGLMITLGTSLSV-NAWTVLIDG---FRRLRRLDMAGYLWEKMVQNG-CSP-NVVTYTSLIKGFMEAKMFSIAFSFLDML 316 (645)
Q Consensus 243 ~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (645)
+....+ ..+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|...++..
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111 11110 111111111 123478999999999988754 223 4566778888888999999999999998
Q ss_pred HhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHH
Q 006437 317 ESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVY 395 (645)
Q Consensus 317 ~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (645)
.+. .|+ ...|..+...+...|++++|...|+++.+.. | .+...|
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p-------------------------------~~~~~~ 402 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S-------------------------------EDPDIY 402 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-------------------------------CCHHHH
Confidence 876 343 5577788888999999999999999887742 2 234556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437 396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA 475 (645)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 475 (645)
..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++..+...+. +...++.+..++...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 667777788888888888888887753 234556667777788888999999998888876654 677788888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVV------SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNI 548 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~ 548 (645)
|++++|.+.|++.....-..+.. .++.....+...|++++|.+++++..+ +.| +...+..+...+...|++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCH
Confidence 99999999998887753111111 122222233446889999999998877 345 455788888899999999
Q ss_pred HHHHHHHHHHHHC
Q 006437 549 KMVKRLLQDVIDA 561 (645)
Q Consensus 549 ~~a~~~~~~~~~~ 561 (645)
++|.+.+++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=2e-15 Score=159.66 Aligned_cols=444 Identities=11% Similarity=0.028 Sum_probs=276.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437 51 HIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDV-QSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY 129 (645)
Q Consensus 51 ~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 129 (645)
..-..+..+.|++..|+..|+.+.+..+ .++ ..+ .++.++.. .|+.++|+..+++.... ...+......+...+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~-~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGW-AGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHH-cCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 3334455588999999999999987655 232 333 88888888 79999999999998722 123444455556788
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh--hhHHHHHHHHHhcCCcchHHHH
Q 006437 130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF--LSFNIALCNLCKLNDVSNVKDV 207 (645)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~ 207 (645)
...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++.+.++ ..+..++..+...++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 89999999999999999875 55677888888999999999999999999874443 3443333333345666569999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh------HHHHHHHH-----HhcCC---HHH
Q 006437 208 IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA------WTVLIDGF-----RRLRR---LDM 273 (645)
Q Consensus 208 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~li~~~-----~~~~~---~~~ 273 (645)
++++.+.. +-+...+..+..++.+.|-...|.++...-... +.+.... ...+++.- ....+ .+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999874 335777888899999999998888777653321 1111110 01111100 01112 233
Q ss_pred HHHHHHHHHHc-CCCCCh-hc----hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437 274 AGYLWEKMVQN-GCSPNV-VT----YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDV 347 (645)
Q Consensus 274 a~~~~~~m~~~-~~~~~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 347 (645)
|+.-++.+... +-.|.. .. ..-.+-++...+++.++++.|+.+...|.+....+-..+..+|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 44444444431 111221 11 1233445666677777777777777666554445666677777777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----
Q 006437 348 YDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF---- 423 (645)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---- 423 (645)
|..+........ ...++......|..+|...+++++|..+++.+.+...
T Consensus 350 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 350 LSSLYYSDGKTF---------------------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred HHHHhhcccccc---------------------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 777655321100 1122333456677788888888888888888876311
Q ss_pred -------CCCH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 424 -------TPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY 493 (645)
Q Consensus 424 -------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 493 (645)
.|+. ..+..++..+...|++.+|++.++.+....|. |..+...+.+.+...|.+.+|++.++.+....
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~- 480 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA- 480 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-
Confidence 0111 12233444555666666666666666655555 56666666666666666666666665554442
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437 494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533 (645)
Q Consensus 494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 533 (645)
|.+..+....+.++...+++++|..+.+.+.+ ..|+..
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 33455555555566666666666666666655 345433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=5.6e-17 Score=171.23 Aligned_cols=328 Identities=15% Similarity=0.085 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL 198 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 198 (645)
...++..+.+.|++++|..+++...... +-+...+..++.+....|++++|.+.|+++. +.+...+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4455666667777777777777666543 2334444444455555666666666655543 22333444444455555
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006437 199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLW 278 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 278 (645)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 55555555555554431 1123344444444445555555555444443332211 1111111 1234444444444444
Q ss_pred HHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006437 279 EKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVP 358 (645)
Q Consensus 279 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (645)
+.+.+ ....++...+..+...+...|++++|...++++.+.. |
T Consensus 201 ~~~l~-----------------------------------~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p 243 (656)
T PRK15174 201 RALLP-----------------------------------FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--L 243 (656)
T ss_pred HHHHh-----------------------------------cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 44433 2111122222223334444455555555554444321 1
Q ss_pred CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQ----AVKLYNTMLDKGFTPDNYSFVGLL 434 (645)
Q Consensus 359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll 434 (645)
.+...+..+...+...|++++ |+..|++..+.. +.+...+..+.
T Consensus 244 -------------------------------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg 291 (656)
T PRK15174 244 -------------------------------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYA 291 (656)
T ss_pred -------------------------------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 112223333334444444442 444454444431 12233444445
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCH
Q 006437 435 RGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV-VSYTVAIRGLLEGGRT 513 (645)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 513 (645)
..+...|++++|...+++.....+. +...+..+..++.+.|++++|...++++...+ |+. ..+..+..++...|+.
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCH
Confidence 5555555555555555555544433 33344445555555555555555555555432 222 2222334445555555
Q ss_pred HHHHHHHHHHhh
Q 006437 514 EEAYILYSQMKH 525 (645)
Q Consensus 514 ~~A~~~~~~m~~ 525 (645)
++|...|++..+
T Consensus 369 deA~~~l~~al~ 380 (656)
T PRK15174 369 SEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.5e-16 Score=168.96 Aligned_cols=416 Identities=10% Similarity=0.007 Sum_probs=221.0
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM 161 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (645)
++....-.+.+... .|+.++|++++.+..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~d~~~ia~~-~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALW-AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44444444555556 567777777776665522 3455556666667777777777777777766542 33455566666
Q ss_pred HHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437 162 DVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE 238 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 238 (645)
.++...|++++|+..+++.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 66677777777777776654 33344 66666666677777777777777766531 134444555666666677777
Q ss_pred HHHHHHHHHHcCCCcCH------HhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCChh-chH----HHHH
Q 006437 239 AYQLLGLMITLGTSLSV------NAWTVLIDGFR-----RLRRL---DMAGYLWEKMVQN-GCSPNVV-TYT----SLIK 298 (645)
Q Consensus 239 a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~ 298 (645)
|.+.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 7766665443 1111 01112222221 12233 6677777777743 1122221 111 1133
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437 299 GFMEAKMFSIAFSFLDMLESEGHA-PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS 377 (645)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 377 (645)
.+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+++.+.. |..
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~----------------- 305 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETI----------------- 305 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCC-----------------
Confidence 445668888888888888776532 322 12224667888888888888888776532 110
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437 378 LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN 457 (645)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 457 (645)
..........+..++...|++++|..+++.+.+.. ++....+. .....
T Consensus 306 ----------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~---------------------~~~~~ 353 (765)
T PRK10049 306 ----------ADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG---------------------SPTSI 353 (765)
T ss_pred ----------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC---------------------CCCCC
Confidence 00112334455556778888888888888887652 11110000 00000
Q ss_pred CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHH
Q 006437 458 PAVN-AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTY 535 (645)
Q Consensus 458 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 535 (645)
+.++ ...+..+...+...|++++|+++++++.... |.+...+..+...+...|++++|++.+++..+ ..|+ ...+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~ 430 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLE 430 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence 1100 1122333444444455555555555544432 33344455555555555555555555555544 3342 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
......+...|++++|..+++++++
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444455555555555555554
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.2e-16 Score=172.68 Aligned_cols=424 Identities=10% Similarity=0.021 Sum_probs=274.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHH
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIAL 192 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll 192 (645)
+.++....-.+......|+.++|++++....... +.+...+..+..++...|++++|.++|++.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566667777888888999999999999887632 5566678888889999999999999998853 44566677777
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH
Q 006437 193 CNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLD 272 (645)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 272 (645)
..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+..+. +...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 88888899999999998887763 23455 777888888889999999999988886433 5556666777788888888
Q ss_pred HHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---HHHHHHHH
Q 006437 273 MAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY---DDALDVYD 349 (645)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~ 349 (645)
.|.+.++.... .|+.. .-+ ....+....+.. +.......+++ ++|++.++
T Consensus 168 ~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPAEK---RDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHH
Confidence 88888876553 23310 000 000000000000 00000111112 45555555
Q ss_pred HHHHC-CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH
Q 006437 350 GLLEL-KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFT-PDN 427 (645)
Q Consensus 350 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~ 427 (645)
.+.+. ...|+... .+ .......+..+...|++++|+..|+.+.+.+.. |+.
T Consensus 221 ~ll~~~~~~p~~~~--~~-------------------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 221 ALEALWHDNPDATA--DY-------------------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HHHhhcccCCccch--HH-------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 55532 11121100 00 000011122233445666666666666554321 221
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------C
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV---NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK-----------Y 493 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~ 493 (645)
....+..++...|++++|...|+.+....+.. .......+..++.+.|++++|.++++.+.... -
T Consensus 274 -a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 274 -AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 11223445566666666666666655443221 12334445555666666777766666665542 0
Q ss_pred CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437 494 PLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT 569 (645)
Q Consensus 494 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 569 (645)
.|+ ...+..+...+...|+.++|+++++++... .| +...+..+...+...|++++|++.++++.+..+. +...
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l 429 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINL 429 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHH
Confidence 123 235667778889999999999999999874 45 6788899999999999999999999999986654 5778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 570 SIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 570 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+..++..+.+.|++++|.++++++.+ ..|+..
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 88888899999999999999999985 566655
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2e-16 Score=167.12 Aligned_cols=388 Identities=12% Similarity=0.038 Sum_probs=286.6
Q ss_pred HhcCCHhHHHHHHhhcCC------CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437 165 FKIGRVDLGIKVLKETQL------PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE 238 (645)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 238 (645)
.+..+|+.-.-+|...++ .+..-...++..+.+.|++++|..+++........ +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 345566665555555441 12223445667778889999999999888876433 34455566677778999999
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437 239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES 318 (645)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (645)
|...++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998864 3356778888888999999999999999988752 33566778888889999999999999988766
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHH
Q 006437 319 EGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNAL 398 (645)
Q Consensus 319 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 398 (645)
....+ ...+..+ ..+...|++++|...++.+.+.... ++...+..+
T Consensus 173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~--------------------------------~~~~~~~~l 218 (656)
T PRK15174 173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFAL--------------------------------ERQESAGLA 218 (656)
T ss_pred hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC--------------------------------cchhHHHHH
Confidence 53322 2233223 3477889999999998887764211 112233444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437 399 LSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDE----AINVYQGIVMNNPAVNAHVHTAIVDRLIE 474 (645)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (645)
...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++ |...++......+. +...+..+...+.+
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 296 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 567788999999999999998864 3356677788889999999986 89999999988776 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY-TYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 553 (645)
.|++++|...++++.+.. +.+...+..+..++.+.|++++|+..++++.+ ..|+.. .+..+..++...|+.++|..
T Consensus 297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999875 44577788899999999999999999999987 456543 34445778899999999999
Q ss_pred HHHHHHHCCCCcCHHHHH----HHHHHHHhcCChhHHHHHHHHHH
Q 006437 554 LLQDVIDARIELDYHTSI----RLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.++++.+..++-....|. .+..++...+..++......++.
T Consensus 374 ~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 374 VFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 999998765543333443 33344444555554444555543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.4e-15 Score=160.86 Aligned_cols=427 Identities=12% Similarity=0.027 Sum_probs=217.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhH-HHH--HHHHHhcCCcch
Q 006437 129 YWRGEMYGMVLEAFDEMGRFGFTPNT--FARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSF-NIA--LCNLCKLNDVSN 203 (645)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--l~~~~~~g~~~~ 203 (645)
..+.|+++.|+..|++..+.. |+. .++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 346666666776666666543 331 233 666666666777777777766664433332 222 335555677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 204 VKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 204 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
|+++|+++.+... -+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 7777777766532 23455556666677777777777777777654 34444444444444445555557777777776
Q ss_pred cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH------HHHHHHH---H--hcC---CHHHHHHHHH
Q 006437 284 NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFH------NVLIDCL---S--KMG---SYDDALDVYD 349 (645)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~~---~~~~a~~~~~ 349 (645)
.. +-+...+..+..++.+.|-...|+++..+-... +.+...-. ...++.- . ... -.+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 53 234555666677777777777776655542211 11110000 0001000 0 011 1234444444
Q ss_pred HHHHC-CCCCCH-hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006437 350 GLLEL-KLVPDS-YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN 427 (645)
Q Consensus 350 ~~~~~-~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 427 (645)
.+... +-.|.. ..|. ...--.+-++...|+..++++.|+.|...+.+...
T Consensus 276 ~l~~~~~~~p~~~~~~~----------------------------~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQ----------------------------RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhccCCCccchHHH----------------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 44431 111211 1111 01112233445555556666666665555543333
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNP-----AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--------- 493 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------- 493 (645)
.+-..+..+|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 4455555555556666666666665544321 11222234555555556666666666655554210
Q ss_pred --CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 006437 494 --PLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDY 567 (645)
Q Consensus 494 --~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 567 (645)
.|| ...+..++..+...|+..+|++.++++.. ..| |......+...+...|.+.+|+++++.+....+. +.
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~ 484 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SL 484 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cH
Confidence 011 11223344445555666666666666654 233 5555555566666666666666666554443322 44
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 568 HTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.+....+.++...|++++|.++.++..
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455555555555566666655555554
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.2e-14 Score=133.39 Aligned_cols=428 Identities=13% Similarity=0.099 Sum_probs=287.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC--HhHHH-HHHhhcC---CCChhhHHHHHHH
Q 006437 121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR--VDLGI-KVLKETQ---LPNFLSFNIALCN 194 (645)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~-~~~~~~~---~~~~~~~~~ll~~ 194 (645)
+=+.+++ ....|.+.++.-+|+.|.+.|.+.+..+-..|++..+-.+. +.-|. +-|-.|. +.+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 4444444 34678899999999999999999998888877766544332 22111 1122221 2222222
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437 195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA 274 (645)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 274 (645)
+.|... +++-+.. +-+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+
T Consensus 191 --K~G~vA---dL~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---- 257 (625)
T KOG4422|consen 191 --KSGAVA---DLLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---- 257 (625)
T ss_pred --ccccHH---HHHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----
Confidence 122221 1332221 235678888888888888888888888888877667788888888766443222
Q ss_pred HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHH
Q 006437 275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSI----AFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD-ALDVYD 349 (645)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~ 349 (645)
.+++.+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 6788888888888888888888888888887654 45677888888888888888888888888777644 444444
Q ss_pred HHHH----CCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 006437 350 GLLE----LKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG--- 422 (645)
Q Consensus 350 ~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--- 422 (645)
++.. ..++|- ...|...|..-+..|.+..+.+-|.++-.-+....
T Consensus 338 dI~N~ltGK~fkp~----------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPI----------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred HHHHhhccCcccCC----------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 4433 112221 11234455666666777777777766655443221
Q ss_pred -CCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437 423 -FTPD---NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498 (645)
Q Consensus 423 -~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 498 (645)
+.|+ ..-|..+....|+....+.....|+.|+.+-.-|+..+...++++....+.++-.-+++.+++.-|..-+..
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 2333 234667777888999999999999999999888889999999999999999999999999988877655555
Q ss_pred hHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 499 SYTVAIRGLLEGG-RT--------EE-----AYILY-------SQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQD 557 (645)
Q Consensus 499 ~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 557 (645)
.-..++..+++.+ +. .. |..++ .+|.. ..-....++..+-.+.+.|..++|.+++..
T Consensus 470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 5555555555543 11 11 11111 12333 234556677778888999999999999999
Q ss_pred HHHCCC-C---cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006437 558 VIDARI-E---LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGL 598 (645)
Q Consensus 558 ~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 598 (645)
+.+.+- . |.......+++...+.+...+|...++-|...+.
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 965432 2 2334445667777788889999999999876543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=4.2e-13 Score=129.96 Aligned_cols=448 Identities=12% Similarity=0.055 Sum_probs=291.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhc---CCCChhhHHHHHHHHHhcCCcchHHHH
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKET---QLPNFLSFNIALCNLCKLNDVSNVKDV 207 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~ 207 (645)
...+.+.|.-++....+. ++.+...|. +|++..-++.|..++++. .+.+...|-+....--.+|+.+...++
T Consensus 388 elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 344555566666666654 233443333 444555566666666554 356667776666666667777777777
Q ss_pred HHH----HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 208 IGM----MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS--VNAWTVLIDGFRRLRRLDMAGYLWEKM 281 (645)
Q Consensus 208 ~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m 281 (645)
+++ +...|+..+...|..=...|-..|..-.+..+....+..|+... ..+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 34557777777777777777777888888888777777665432 347777777888888888888888877
Q ss_pred HHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006437 282 VQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSY 361 (645)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (645)
.+- .+-+...|......--..|..+....+|++....- +-....|-.....+-..|+...|..++....+.... +..
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 754 23355566666666666777888888888877762 223344444455666778888888888888775422 567
Q ss_pred hHHHHHHHHHhcCCcccHHHHH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHc
Q 006437 362 TFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCG 439 (645)
Q Consensus 362 ~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 439 (645)
.+-..+.......+++.|..+| +.....|+...|.--+...-..++.++|++++++..+. -|+ ...|..+.+.+-+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 7777777778888888888888 33445666667766666666678888888888877775 344 4456666677777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL 519 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 519 (645)
.++++.|...|..-.+.-+. .+..|-.+...--+.|.+-+|..++++..-++ |-+...|-..|+.-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 78888888877776655443 56677777777788888888888888877665 55777888888888888888888877
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 520 YSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 520 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
..+.++. ++.+...|.--|...-+.++-......++ + .+-|++..-.+...+....++++|.+.|.+....
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7666542 22233344444444433333222222222 2 1224455555555555555555555555555533
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.3e-12 Score=124.90 Aligned_cols=511 Identities=12% Similarity=0.055 Sum_probs=397.5
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 006437 68 SFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGR 147 (645)
Q Consensus 68 ~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (645)
++++.+...-+ .|...|..... -.+.+.|+-++++..+. ++.+.+.+. ++++..-++.|..+++...+
T Consensus 367 RVlRKALe~iP--~sv~LWKaAVe-----lE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 367 RVLRKALEHIP--RSVRLWKAAVE-----LEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHhCC--chHHHHHHHHh-----ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 45555544432 35555654432 23455688888877665 344555444 55667788999999999876
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437 148 FGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--------LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 148 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
. ++.+...|-+-...=-..|+.+...++.++.. .-+...|-.=...+-..|..-.+..+....+..|+.-.
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 67888899887777788999999999888653 34455676667777788888888888888887776532
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHH
Q 006437 220 --VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLI 297 (645)
Q Consensus 220 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (645)
..||..-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|++.... ++.....|-...
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence 458889999999999999999999999876 3446678888887778889999999999999875 445667777778
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437 298 KGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS 377 (645)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 377 (645)
..+-..|+...|..++.+..+.... +...|-..+..-..+.+++.|..+|.+... ..|+..+|..-+....-.+..+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence 8888899999999999999887433 667788888888999999999999998876 4678888888888888889999
Q ss_pred cHHHHHh-cCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006437 378 LLPKLVC-GLEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM 455 (645)
Q Consensus 378 ~a~~~~~-~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 455 (645)
+|.++++ .+..-|+. -.|-.+-+.+-+.++.+.|...|..-.+. ++-....|..+...=-+.|.+-.|..+++...-
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999993 34455653 46777777888888899888888765443 333444565666666678899999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437 456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY 535 (645)
Q Consensus 456 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 535 (645)
++++ +...|-..+.+-.+.|+.+.|..+..++++. +|.+...|..-|....+.++-......+++ +.-|++.+
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVl 820 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVL 820 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhH
Confidence 9988 8889999999999999999999999999876 466778888888877777765555544443 35678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhh
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWR 605 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~ 605 (645)
..+...+....++++|++.|.+..+.+.. ...+|.-+...+.++|.-++-.++++...+....-...|.
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 99999999999999999999999987665 6778888999999999999999999999855433334465
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.4e-12 Score=117.35 Aligned_cols=425 Identities=12% Similarity=0.075 Sum_probs=247.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHH
Q 006437 60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKA-QTFLLFLRIYWRGEMYGMV 138 (645)
Q Consensus 60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a 138 (645)
+++.+.|..+|+.+..... .+...|-.-+..-.+ +.....|..++++.... .|-. ..+...+..=-..|++..|
T Consensus 86 q~e~~RARSv~ERALdvd~--r~itLWlkYae~Emk-nk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY--RNITLWLKYAEFEMK-NKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHh-hhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHH
Confidence 4455677778877766543 466677777777777 67778888888877765 2333 2344444444556788888
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC-C
Q 006437 139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK-G 215 (645)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~ 215 (645)
.++|+.-... +|+..+|++.++.=.+...++.|..++++.. .|++.+|-....--.+.|+...+..+|+...+. |
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 8888877654 7888888888888888888888888888765 777777777777777788888888888776543 1
Q ss_pred C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHH--------HHHHHHcC
Q 006437 216 F-YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRLDMAGYL--------WEKMVQNG 285 (645)
Q Consensus 216 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~ 285 (645)
- ..+...+.++...-.++..++.|.-+|.-....-+.. ....|......=-+-|+.....+. |+.+.+.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 1122334444444455667777888877776642211 134555555554555665444332 33333332
Q ss_pred CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHH---HHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 286 CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL-------VFHNV---LIDCLSKMGSYDDALDVYDGLLELK 355 (645)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (645)
+-|-.+|-..++.-...|+.+...++|+..... ++|-. ..|-. .+-.-....+.+.+.++|+..++.
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 346677777777777778888888888887765 33321 11111 111122456777777777777762
Q ss_pred CCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 356 LVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR 435 (645)
Q Consensus 356 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 435 (645)
++....||..+--+|+ ..-.++.+...|.+++...+ |.-|-..+|...|.
T Consensus 396 IPHkkFtFaKiWlmyA----------------------------~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYA----------------------------QFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred cCcccchHHHHHHHHH----------------------------HHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 3334455554433332 22334444555555554332 23445555555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHH
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTE 514 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 514 (645)
.=.+.+.++.+..+++..+.-+|. +..+|......-...|+.++|..+|+-+++... ......|-+.|.--...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 555555555555555555555544 555555555555555555555555555554320 011233444444444555555
Q ss_pred HHHHHHHHHhh
Q 006437 515 EAYILYSQMKH 525 (645)
Q Consensus 515 ~A~~~~~~m~~ 525 (645)
.|..+|+++++
T Consensus 525 kaR~LYerlL~ 535 (677)
T KOG1915|consen 525 KARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=4.4e-12 Score=127.95 Aligned_cols=534 Identities=12% Similarity=0.073 Sum_probs=294.6
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006437 59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMV 138 (645)
Q Consensus 59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 138 (645)
.+|+.+.|.+++..+.++.+ ..+..|.+|..++-. .|+.+.+...+-...... +-|...|..+.....+.|++.+|
T Consensus 151 arg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 44667777777766666554 456666666666666 566666655544333332 23445555555555566666666
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCC-----------------------------------
Q 006437 139 LEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLP----------------------------------- 183 (645)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----------------------------------- 183 (645)
.-.|.+.++.. +++....-.-+..|-+.|+...|.+-|.++...
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666554 334333334455555566666665555544311
Q ss_pred ---------ChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC---------------------------CCCHhhHHHHH
Q 006437 184 ---------NFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF---------------------------YPNVRMFEILL 227 (645)
Q Consensus 184 ---------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll 227 (645)
+...+++++..+.+...++.+......+..... .++... ..+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 112334444444444444444444443333110 111111 0111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCC
Q 006437 228 NCFCKMGRIAEAYQLLGLMITLG--TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKM 305 (645)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (645)
-++...+..+....+...+.... +.-++..|.-+.++|...|++.+|+++|..+.......+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 22222333333333333333333 2234556777888888888899999988888876544566788888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHhcCCcc
Q 006437 306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE--------LKLVPDSYTFCSLLSTVCLSGRFS 377 (645)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~ 377 (645)
++.|.+.|+....... -+...-..|...+-+.|+.++|.+.+..+.. .+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999888888877521 1333344566677788888888888887542 223344434344444445555443
Q ss_pred cHHHH----HhcC-------------------------------------------------CCCC-----------CH-
Q 006437 378 LLPKL----VCGL-------------------------------------------------EVEA-----------DL- 392 (645)
Q Consensus 378 ~a~~~----~~~~-------------------------------------------------~~~~-----------~~- 392 (645)
+-... +... ...+ +.
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 21111 0000 0000 00
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCC--C-
Q 006437 393 ---VVYNALLSYFCKAGFPNQAVKLYNTMLDKGF--TPDN---YSFVGLLRGLCGARKIDEAINVYQGIVMN-NPA--V- 460 (645)
Q Consensus 393 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--~- 460 (645)
..+.-++..+++.+++++|+.+...+..... .++. ..-...+.+++..+++..|...++.++.. +.. +
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1234456677788888888888877766431 1111 11233455666788888888888888766 111 1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML- 539 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll- 539 (645)
-...|+...+.+.+.++-..-.+.+..+.......+..............+.+..|+..+-+... ..|+....+..+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 23445555555555555444444444444332111122222333344567888999998877766 467654444333
Q ss_pred HHHHh---c-------CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 540 LSFCK---E-------RNIKMVKRLLQDVIDARIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 540 ~~~~~---~-------g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
-++.. + -..-.+..++.+..+.... -....+-.++++|...|-..-|...+++.+ ++.|-..
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~~ 854 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCcccc
Confidence 22211 1 1233455555555543221 135667789999999999999999999998 6665444
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.8e-14 Score=129.44 Aligned_cols=452 Identities=13% Similarity=0.112 Sum_probs=300.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH-HHHHHHHhcCCHhHHHHHHhhcC----CCCh----hhHHHH
Q 006437 121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN-IVMDVLFKIGRVDLGIKVLKETQ----LPNF----LSFNIA 191 (645)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l 191 (645)
....|.+-|.......+|+..|+-+.+...-|+.-... .+...+.+.+.+.+|++.+.... .-+. ...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34455667778889999999999999888777765432 35567888899999999887543 2222 234444
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC------------HHhHH
Q 006437 192 LCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS------------VNAWT 259 (645)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~ 259 (645)
.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..|+.....|| ....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 45678999999999999998776 48877666666677778999999999999986533322 22222
Q ss_pred HHH-----HHHHhcCC--HHHHHHHHHHHHHcCCCCChhc-hH------------H--------HHHHHHhcCChhHHHH
Q 006437 260 VLI-----DGFRRLRR--LDMAGYLWEKMVQNGCSPNVVT-YT------------S--------LIKGFMEAKMFSIAFS 311 (645)
Q Consensus 260 ~li-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~-~~------------~--------li~~~~~~~~~~~a~~ 311 (645)
..| .-+-+.++ .++++-.-.++..--+.|+-.. +. . -.-.|.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 222 11222111 1222211122221112222111 00 0 0123677888999988
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCC
Q 006437 312 FLDMLESEGHAPDLVFHNVLIDCL-SK-MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVE 389 (645)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~ll~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 389 (645)
+++-+.++.-+.-...-+.+-..+ .+ ..++..|.+.-+...... .-+......-.......|+++.|.+.+++. ..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea-l~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA-LN 518 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH-Hc
Confidence 888887764332222233222222 22 335666666666554321 111111111122234567888888887442 22
Q ss_pred CCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 006437 390 ADLVVYNALL---SYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT 466 (645)
Q Consensus 390 ~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (645)
.|...-..+. -.+-..|+.++|++.|-++..- +..+......+...|....+...|++++.+....-+. |+.+.+
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ils 596 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILS 596 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHH
Confidence 2322222222 2356789999999999876543 2346667777888888889999999999887665444 888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-Hhc
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF-CKE 545 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~ 545 (645)
-|.+.|-+.|+-..|.+.+-+-- +-+|.|..+..-|..-|....-+++|+.+|++..- ++|+..-|..++..| .+.
T Consensus 597 kl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 99999999999999988766543 23677888988899999999999999999999876 899999999998877 678
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437 546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHS 582 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 582 (645)
|++++|.++++...+. +.-|......|++.+...|-
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999998775 44489999999998887774
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=3e-11 Score=122.10 Aligned_cols=461 Identities=13% Similarity=0.095 Sum_probs=296.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV 176 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 176 (645)
.|++++|.+++.+..+.. +-+...|..|...|-..|+.+++...+-...-.. +.|...|..+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 599999999999999986 5688899999999999999999988776554333 55778999999999999999999999
Q ss_pred HhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437 177 LKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM----FEILLNCFCKMGRIAEAYQLLGLMITL 249 (645)
Q Consensus 177 ~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (645)
|.+.. +++...+-.-...|-+.|+...|.+-|.++.+...+.|..- --.+++.+...++.+.|.+.++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99876 34444444556678889999999999999988753333333 334566677788889999999888763
Q ss_pred -CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCChhchHHHHHHHH
Q 006437 250 -GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ---------------------------NGCSPNVVTYTSLIKGFM 301 (645)
Q Consensus 250 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------------~~~~~~~~~~~~li~~~~ 301 (645)
+-.-+...++.++..+.+...++.|......+.. .++.++... --+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2234566788899999999999999888887766 122334333 12233444
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccH
Q 006437 302 EAKMFSIAFSFLDMLESEG--HAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLL 379 (645)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 379 (645)
..+..+....+..-+.+.. +.-+...|.-+..++...|++..|+.+|..+......-+..+|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4455555555555555554 33345567777788888888888888888888766555677788888888888888888
Q ss_pred HHHHhc-CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------CCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437 380 PKLVCG-LEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLD--------KGFTPDNYSFVGLLRGLCGARKIDEAINV 449 (645)
Q Consensus 380 ~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 449 (645)
.+.++. +...|+ ...--.|...+-+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 877733 334443 33444556667778888888888877432 23556666666666666777777665554
Q ss_pred HHHHHHcC-----C-----------------CCcHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCC--hhh
Q 006437 450 YQGIVMNN-----P-----------------AVNAHVHTAIVDRLIEAGRCHKAIQLFR------RAIVEKYPLD--VVS 499 (645)
Q Consensus 450 ~~~~~~~~-----~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~--~~~ 499 (645)
...|+... + .........+..+-.+.++......-.. .....++.-+ -..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 44433211 0 1111122223333333333222111111 1111111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH---H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY---T-YRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~---~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+.-++.++++.+++++|+.+...+.+....- +.. . -...+.++...+++..|...++.|..
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455566667777777777766665432211 111 2 23344455666777777777666654
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=1.6e-13 Score=137.19 Aligned_cols=528 Identities=10% Similarity=0.016 Sum_probs=262.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 006437 76 QRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTF 155 (645)
Q Consensus 76 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (645)
..+..|+..+|..+|.-|+. .|+.+.|- +|.-|.....+.+...|+.++.+....++.+.+. .|.+.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~-~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCT-KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcc-cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34555667777777777776 67666666 6776666666666666777777666666665554 46666
Q ss_pred hHHHHHHHHHhcCCHhH---HHHHHhhcC---CCCh----hh---------------HHHHHHHHHhcCCcchHHHHHHH
Q 006437 156 ARNIVMDVLFKIGRVDL---GIKVLKETQ---LPNF----LS---------------FNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 156 ~~~~ll~~~~~~g~~~~---A~~~~~~~~---~~~~----~~---------------~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
+|..|..+|...||... ..+.++.+. .+.. .. -...+.-..-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777776433 222222111 0000 00 00011111112222222222222
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV 290 (645)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 290 (645)
+...... . ++..+++-+.. .....+++.+...+..-.|+..+|.++++.-...|+.+.|..++.+|++.|++.+.
T Consensus 165 ~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 165 VPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2111000 0 00001111111 12223333333322211456666666666666666666666666666666666666
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
.-|-.++.+ .++...+..+++.|.+.|+.|+..|+...+..+..+|....+.. |. +...-+.+-+..-
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~tAavrsa 307 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGFTAAVRSA 307 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhhhHHHHHH
Confidence 555555544 55566666666666666666666666655555555443221111 11 1111111111111
Q ss_pred HhcCCcccHHHHHh---------c------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCC-CHhhHHH
Q 006437 371 CLSGRFSLLPKLVC---------G------LEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG--FTP-DNYSFVG 432 (645)
Q Consensus 371 ~~~~~~~~a~~~~~---------~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p-~~~~~~~ 432 (645)
.-.| ..+.+.++ . .+......+|...+. ...+|.-+..+++-..|..-- ..+ +...|..
T Consensus 308 a~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 308 ACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred Hhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 1111 11111110 0 011222233333222 233566666665555553311 111 1122333
Q ss_pred HHHHHHc----------------------CCCHHHHHHHHHHHHHc----------------CCC-------CcHHHHHH
Q 006437 433 LLRGLCG----------------------ARKIDEAINVYQGIVMN----------------NPA-------VNAHVHTA 467 (645)
Q Consensus 433 ll~~~~~----------------------~~~~~~a~~~~~~~~~~----------------~~~-------~~~~~~~~ 467 (645)
++.-|.+ ..+..+..+.......+ ... +-...-+.
T Consensus 385 ~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 385 LLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 3322221 11111111111111000 000 01112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPNAYTYRVMLLSFCKE 545 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~ 545 (645)
++..++..-+..+++..-+.....-+ ...|..||.-+..+.+.+.|..+.++..... +.-|..-+..+.+...+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 44445555555555544444333221 2568888888888888999998888876322 334666778888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhhHHHhhhcccCCcccccc
Q 006437 546 RNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPD-EMWRKLGLLSDETMTPVSLFD 622 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~w~~~~~L~~~~~~~~~~~~ 622 (645)
+....+..+++++.+.-..-+ ..+.-.+.+..+..|+.+...++.+-+...|+.-+ ..|+ .++--++...+.++.+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~-vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWM-VHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceE-EEeeccchhhhhhcch
Confidence 888888888888876322212 45556667777888888888888888888776552 2233 1111277778888888
Q ss_pred ccccccccCCCcchhhcc
Q 006437 623 GFVPCERRAGNANHLLLN 640 (645)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~ 640 (645)
......+..|-.+.+++.
T Consensus 621 ~~~qkyk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCR 638 (1088)
T ss_pred HHHHHhcCChHHHHHHHH
Confidence 877777777777666553
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.2e-11 Score=112.81 Aligned_cols=434 Identities=10% Similarity=0.068 Sum_probs=239.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCCh-hhHHHHHHH
Q 006437 118 KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNF-LSFNIALCN 194 (645)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~ll~~ 194 (645)
+...+....+.=...++++.|..+|+...... ..+...|-..+.+=.++..+..|..++++.. -|-+ ..|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334333344444555555555665555443 3344445445555555555555555555433 1111 122222222
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437 195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA 274 (645)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 274 (645)
--..|++..|.++|+.-.+- .|+...|.+.|+.-.+.++++.|..+++..+- +.|++..|--....=.++|....|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 22344555555555444432 44555555555554455555555555544443 234444444444444444444444
Q ss_pred HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (645)
..+|+...+. -.|... +...+.+...--.+...++.|.-+|+-.++.
T Consensus 227 R~VyerAie~--~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHH--hhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444321 001111 1112222222222334445555555544442
Q ss_pred CCCCC--HhhHHHHHHHHHhcCCcccHHHHH---hc------C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437 355 KLVPD--SYTFCSLLSTVCLSGRFSLLPKLV---CG------L-EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG 422 (645)
Q Consensus 355 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~---~~------~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 422 (645)
++.+ ...|..+...--+-|+.....+.+ +. . ...-|..+|--.+..--..|+.+...++|+..+..
T Consensus 274 -~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 274 -IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred -cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 1111 223333333333344443333332 00 0 12235556666666667778888888888888765
Q ss_pred CCCCHh-------hHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 006437 423 FTPDNY-------SFVGLLRGL---CGARKIDEAINVYQGIVMNNPAVNAHVHTAI----VDRLIEAGRCHKAIQLFRRA 488 (645)
Q Consensus 423 ~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~ 488 (645)
++|-.. .|..+--+| ....+++.+.++++..++.- +....++.-+ .....++.++..|.+++..+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI-PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455321 222222222 24678888888888877742 2244444443 33334678888888888877
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 006437 489 IVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR-IELD 566 (645)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 566 (645)
+ |..|-..+|...|..-.+.++++....+|++.++ ..| |..+|......-...|+.+.|..+|+.+++.. .+..
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 6 4468888888888888888899999999999888 456 67788877777788899999999998887542 3334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 567 YHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 567 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
...|...++.-...|.++.|..+++++++.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 667788888888889999999999888765
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.8e-12 Score=118.95 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=196.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhchHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 006437 264 GFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS--LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY 341 (645)
Q Consensus 264 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 341 (645)
-+.+.|+++.|.++++-..+..-+.-...-+. ++..+...+++..|.+.-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46789999999999988876432221222222 2222223456777777776665431 11222222222334457899
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006437 342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE--VEADLVVYNALLSYFCKAGFPNQAVKLYNTML 419 (645)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 419 (645)
++|.+.|++.....-.-....|+ +.-.+-..|++++|.+.|-.+. ...+....-.+...|-...++.+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999888653222222222 2234567889999999884332 23456666778888889999999999998766
Q ss_pred HCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 006437 420 DKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVS 499 (645)
Q Consensus 420 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 499 (645)
.. ++.|+...+.|...|-+.|+-..|.+.+-.--+- +..+..+...|...|....-++++...|++..-. .|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHH
Confidence 54 5667888999999999999999999887665443 3448888889999999999999999999987654 699999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437 500 YTVAIRGLL-EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN 547 (645)
Q Consensus 500 ~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 547 (645)
|..|+..|. +.|++.+|+.+|+..... ++-|...+..|++.|...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999987665 689999999999998763 55588899999998877763
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.9e-11 Score=110.04 Aligned_cols=364 Identities=12% Similarity=0.101 Sum_probs=259.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhch--H
Q 006437 217 YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTY--T 294 (645)
Q Consensus 217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~ 294 (645)
..|...+-.....+-+.|....|+..|...... -+..|.+-+....-..+.+.+..+.. |.+.|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 345444444445556678888888888777643 12344444433333333333322221 222221111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHh
Q 006437 295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL--VPDSYTFCSLLSTVCL 372 (645)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~ 372 (645)
-+..++....+.+++..-.......|+.-....-+....+.-...++++|+.+|+++.+... --|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 23445666667888888888888888765555555555566677899999999999988632 1255777777655444
Q ss_pred cCCcc-cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006437 373 SGRFS-LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQ 451 (645)
Q Consensus 373 ~~~~~-~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 451 (645)
..++. .|..++.--.. .+.|..++.+.|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 33332 34444432222 34466677788888999999999999998864 2245667888888999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437 452 GIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531 (645)
Q Consensus 452 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 531 (645)
..++.++. |-..|-.|..+|.-.+.+.-|+-.|+++.+.. |.|...|.+|..+|.+.++.++|++.|+.....| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 99998877 88899999999999999999999999998875 5689999999999999999999999999999876 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
...+..|.+.|-+.++.++|.+.+++.++. |...+ .....-|...+.+.+++++|.........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 789999999999999999999999988752 22212 23334466778899999999887777763
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=8.8e-12 Score=125.06 Aligned_cols=286 Identities=13% Similarity=0.041 Sum_probs=176.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh-hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHH
Q 006437 267 RLRRLDMAGYLWEKMVQNGCSPNV-VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLV--FHNVLIDCLSKMGSYDD 343 (645)
Q Consensus 267 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 343 (645)
..|+++.|.+.+.+..+. .|+. ..+-....++...|+++.|.+.+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 456666666666555443 2332 222333445555566666666666655432 2321 22223555566666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437 344 ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF 423 (645)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 423 (645)
|...++.+.+.. | .+......+...+.+.|++++|.+++..+.+.++
T Consensus 172 Al~~l~~l~~~~--P-------------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 172 ARHGVDKLLEMA--P-------------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHHHHhC--C-------------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 666666666542 1 1334455556666667777777777777766653
Q ss_pred CCCHhhHH-HHHHHH---HcCCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437 424 TPDNYSFV-GLLRGL---CGARKIDEAINVYQGIVMNNPA---VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD 496 (645)
Q Consensus 424 ~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 496 (645)
.+. ..+. .-..++ ...+..+.+.+.+..+....+. .+...+..++..+...|+.++|.+++++..+.. ||
T Consensus 219 ~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 219 FDD-EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence 322 2221 111111 2222222233344444444332 377788888889999999999999999988764 33
Q ss_pred hhh---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437 497 VVS---YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NA--YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS 570 (645)
Q Consensus 497 ~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 570 (645)
... ...........++.+.+.+.+++..+ ..| |+ ....++.+.|.+.|++++|.+.|+........|+...+
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 321 11222223345778888888888876 356 44 56778899999999999999999965555566788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006437 571 IRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 571 ~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..+...+.+.|+.++|.+++++..
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999998864
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=1.8e-09 Score=105.14 Aligned_cols=510 Identities=13% Similarity=0.162 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006437 84 QSFDHMISVVTRLTGRFETVRGIVGELARV-GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMD 162 (645)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (645)
..|-.-+..+.+ +++...-...|.+.... .+.-....+...++.....+-++-+..+|+..++. ++..-+-.+.
T Consensus 103 RIwl~Ylq~l~~-Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIK-QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345555566666 67777777777765543 22334456777788888888888999999988854 4445777888
Q ss_pred HHHhcCCHhHHHHHHhhcCCC----------ChhhHHHHHHHHHhcCC---cchHHHHHHHHHHCCCCCCH--hhHHHHH
Q 006437 163 VLFKIGRVDLGIKVLKETQLP----------NFLSFNIALCNLCKLND---VSNVKDVIGMMVRKGFYPNV--RMFEILL 227 (645)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~~--~~~~~ll 227 (645)
.+++.+++++|.+.+...... +-..|..+-....++-+ --....+++.+..+ -+|. ..|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 899999999999988876532 33346655555554433 23344455555443 3454 3688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC
Q 006437 228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR----------------------RLDMAGYLWEKMVQNG 285 (645)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~m~~~~ 285 (645)
+-|.+.|.+++|..+|++.... ..++.-|+.+.++|+.-. +++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999988764 345556666666664321 1222333344333321
Q ss_pred -----------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHH
Q 006437 286 -----------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD------LVFHNVLIDCLSKMGSYDDALDVY 348 (645)
Q Consensus 286 -----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~ 348 (645)
-+-++..|..-+. +..|+..+....+.+.... +.|. ...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1112333333222 2345666667777777654 2222 235777888899999999999999
Q ss_pred HHHHHCCCCCC---HhhHHHHHHHHHhcCCcccHHHHHhcCCCCC--------------------CHHHHHHHHHHHHHc
Q 006437 349 DGLLELKLVPD---SYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA--------------------DLVVYNALLSYFCKA 405 (645)
Q Consensus 349 ~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~li~~~~~~ 405 (645)
++..+...+.- ..+|.....+-.+..+++.|.++++..-..| +...|+..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887554332 3455555566667777888888874332211 344677777777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHh---cCCHHHH
Q 006437 406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA-HVHTAIVDRLIE---AGRCHKA 481 (645)
Q Consensus 406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a 481 (645)
|-++....+|+.+.+..+...... .....-+-...-++++.++|++-+....-|+. .+|+..+.-+.+ ...+++|
T Consensus 491 gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 889999999999998765322222 11222234556788999999988777555553 467776665554 2468999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 482 IQLFRRAIVEKYPLDVVSYTVAIR--GLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQD 557 (645)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 557 (645)
..+|++.++ ++||...-+-.|+- .--+.|-...|++++++.... +.+. ...|+..|.--...=.+...+.++++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999998 66665332222222 222568888899999987643 4442 34677777655555455666777777
Q ss_pred HHHCCCCcCHHH---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh---hhHHHhhh
Q 006437 558 VIDARIELDYHT---SIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM---WRKLGLLS 611 (645)
Q Consensus 558 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---w~~~~~L~ 611 (645)
.++. -||... .....+.-.+.|..+.|..++.-..+- ..|... |++.....
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHH
Confidence 7764 233332 233444556778888888877766532 334332 66666555
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.2e-11 Score=123.27 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+..++ |...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3344444555555555555555555555442 223211 1122222335555555555555544443 4444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
.+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555443 244444444555555555555555555443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.3e-11 Score=121.25 Aligned_cols=194 Identities=10% Similarity=0.085 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH 465 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (645)
.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+.-+ .++...
T Consensus 188 ~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~-~~~~~~ 266 (398)
T PRK10747 188 EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR-HQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh-CCHHHH
Confidence 33444445555555555555555555554432211 1222223333333444555555555433322 356666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHh
Q 006437 466 TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCK 544 (645)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 544 (645)
..+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++++..+...+ ..| |+..+..+.+.|.+
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~ 340 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMK 340 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777663 3444221 23333445777777777777776 345 45566677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+.+++-..
T Consensus 341 ~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 341 HGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888887777763 46677777777777778888887777776643
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.7e-14 Score=137.44 Aligned_cols=261 Identities=17% Similarity=0.207 Sum_probs=102.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437 295 SLIKGFMEAKMFSIAFSFLDMLESEGHAPD-LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373 (645)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 373 (645)
.+...+.+.|++++|+++++........|+ ...|..+...+...++.+.|.+.++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 345556666777777777754433321233 333333444555566777777777777654211
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437 374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI 453 (645)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 453 (645)
++..+..++.. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+
T Consensus 77 -----------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 77 -----------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred -----------------ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 22233344444 56777777777776655442 45555666777777788888888888876
Q ss_pred HHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006437 454 VMNN-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA 532 (645)
Q Consensus 454 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 532 (645)
.... ...+...|..+...+.+.|+.++|.+.+++.++.. |.|....+.++..+...|+.+++.++++...+.. +.|+
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 6542 34567777788888888888888888888888764 3357778888888888888888888887776642 4466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..+..+..+|...|+.++|..++++..+.++. |+.....+.+++...|+.++|.++.++..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 67778888888888888888888888876554 78888888888888888888888877654
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=2.9e-11 Score=121.48 Aligned_cols=513 Identities=13% Similarity=0.050 Sum_probs=303.6
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006437 45 PIILAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL 124 (645)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 124 (645)
|...|...+...|...|+.+-|- +|..+..+. ..-....|+.++.+..+ +++.+.+. .|.++||..
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~-And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKE-ANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccc-cccccCCC-----------CCchhHHHH
Confidence 33456666667788888888776 887775542 23467788888888888 67766654 689999999
Q ss_pred HHHHHHhcCChHH---HHHHHHHHh----hCCCCCC--------------HHhHHHHHHHHHhcCCHhHHHHHHhhcCCC
Q 006437 125 FLRIYWRGEMYGM---VLEAFDEMG----RFGFTPN--------------TFARNIVMDVLFKIGRVDLGIKVLKETQLP 183 (645)
Q Consensus 125 li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 183 (645)
+..+|...||+.. ..+.++.+. ..|+... ...-...+......|-++.+++++..++..
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998754 222222221 2222110 011123444555667778888887776621
Q ss_pred Ch-hhHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 006437 184 NF-LSFNIALCNLCKLNDVSNVKDVIGMMVRKGF-YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL 261 (645)
Q Consensus 184 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (645)
.. .++...++-+.... ....++.... +.+. .|++.+|..+++.....|+++.|..++.+|++.|++.+..-|-.|
T Consensus 169 a~~~p~~vfLrqnv~~n--tpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDN--TPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred cccchHHHHHHHhccCC--chHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 11 11111243333222 2233333332 2222 589999999999999999999999999999999999999888887
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--
Q 006437 262 IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMG-- 339 (645)
Q Consensus 262 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 339 (645)
+-+ .++...++.++.-|...|+.|+..|+...+..+..+|....+. .|. +....+.+-...-+-.|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~s-q~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGS-QLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------ccc-chhhhhhHHHHHHHhcccH
Confidence 766 8889999999999999999999999999988888866532221 121 22222222222222223
Q ss_pred ---CHHH-----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC-----CCC-CHHHHHHHHHHHHHc
Q 006437 340 ---SYDD-----ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE-----VEA-DLVVYNALLSYFCKA 405 (645)
Q Consensus 340 ---~~~~-----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~-~~~~~~~li~~~~~~ 405 (645)
+.+. ....+.+..-.|+.....+|.......- .|+-++..++...+. ..+ ++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1111 1111111112233333333333322222 455554444442211 111 222333333322211
Q ss_pred ----------------------CChHHHHHHHHHHHHC----------------CCCC-------CHhhHHHHHHHHHcC
Q 006437 406 ----------------------GFPNQAVKLYNTMLDK----------------GFTP-------DNYSFVGLLRGLCGA 440 (645)
Q Consensus 406 ----------------------g~~~~a~~~~~~m~~~----------------~~~p-------~~~~~~~ll~~~~~~ 440 (645)
....+..++....... ...| -...-+.++..|++.
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1111111111111100 0000 111234455556665
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437 441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
-+..++...-+.....- -...|..|++.++...+.+.|..+.++..... +-.|..-+..+.+.+.+.+....+..
T Consensus 473 ~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 56666654444333222 22678899999999999999999999876542 22355668889999999999999999
Q ss_pred HHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 519 LYSQMKHIA-VPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 519 ~~~~m~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+++++.+.- ..|+ ..++..++...+..|+.+...++.+-+...|+..+ .-++....+.++...|+++.+...
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence 999998632 2332 45677778888899999999999988887776532 223333445555555555555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.3e-11 Score=120.89 Aligned_cols=122 Identities=11% Similarity=0.014 Sum_probs=68.4
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNV-RMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAG 275 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 275 (645)
..|+++.|.+.+....+. .|+. ..+-....++...|+.+.|.+.+....+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356666666666555443 2332 2233344555566666666666666654422222223333455566666666666
Q ss_pred HHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437 276 YLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH 321 (645)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (645)
+.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 6666666553 22445556666666666666666666666666543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.2e-10 Score=107.30 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=170.5
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL 277 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 277 (645)
.|++..|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+....++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544222 2334445555556666666666666666553345555566666666666666666666
Q ss_pred HHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 278 WEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL-------VFHNVLIDCLSKMGSYDDALDVYDG 350 (645)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (645)
++++.+.+ +..........++|.+.|++.....++..+.+.|.-.+. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666543 234455566666666666666666666666666554332 2344444433333333333333333
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 006437 351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF 430 (645)
Q Consensus 351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 430 (645)
... ..+.++..-.+++.-+.+.|+.++|.++..+..+++..|+ .
T Consensus 255 ~pr---------------------------------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L 298 (400)
T COG3071 255 QPR---------------------------------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L 298 (400)
T ss_pred ccH---------------------------------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H
Confidence 322 1233445555666667777888888888777777765555 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG 510 (645)
Q Consensus 431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (645)
. ..-.+.+.++...-.+..+...+..+. ++..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.
T Consensus 299 ~-~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 C-RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQL 374 (400)
T ss_pred H-HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHc
Confidence 1 122345566666666666665555443 4466777777777777777777777766654 36777777777777777
Q ss_pred CCHHHHHHHHHHHhh
Q 006437 511 GRTEEAYILYSQMKH 525 (645)
Q Consensus 511 g~~~~A~~~~~~m~~ 525 (645)
|+.++|.+..++...
T Consensus 375 g~~~~A~~~r~e~L~ 389 (400)
T COG3071 375 GEPEEAEQVRREALL 389 (400)
T ss_pred CChHHHHHHHHHHHH
Confidence 777777777776553
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-09 Score=100.86 Aligned_cols=385 Identities=15% Similarity=0.119 Sum_probs=262.4
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhH--HH
Q 006437 148 FGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMF--EI 225 (645)
Q Consensus 148 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ 225 (645)
.+...|...+-.....+.+.|....|+..|......-+..|.+.+...--..+. +........ ...|...+ --
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~----e~~~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI----EILSILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH----HHHHHHHhc-CcccchHHHHHH
Confidence 344566666655666677788899999988876643334444333322112222 222222221 11111111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhchHHHHHHHHhc
Q 006437 226 LLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC--SPNVVTYTSLIKGFMEA 303 (645)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~ 303 (645)
+..++-.....+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+... --|..+|..++..--.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 3455556667888888888888888877777666666777788999999999999987631 0156667666544322
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437 304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 383 (645)
+- .+..+.+-...--+--..|...+.+-|+-.++.++|...|++..+.+
T Consensus 312 -~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---------------------------- 360 (559)
T KOG1155|consen 312 -KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---------------------------- 360 (559)
T ss_pred -hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----------------------------
Confidence 11 12222221111012234567777888888899999999999888743
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437 384 CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH 463 (645)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (645)
+.....|+.|-.-|...++...|++-++..++-. +-|-..|-.|.++|.-.+...=|.-.|++.....|. |..
T Consensus 361 -----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsR 433 (559)
T KOG1155|consen 361 -----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSR 433 (559)
T ss_pred -----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chH
Confidence 2235568888888999999999999999998863 557788999999999999999999999999888777 899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CC-CCC-CHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IA-VPP-NAYTYRV 537 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p-~~~~~~~ 537 (645)
+|.+|.++|.+.++.++|.+-|++....| ..+...+..|...|-+.++.++|...|++..+ .| +.| .......
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999999876 22458899999999999999999999888654 23 223 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 538 MLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 538 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
|..-+.+.+++++|..+......- .-..++|..+++++..
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHHHHHHH
Confidence 455567778888877665544332 2234567777777654
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=9.7e-11 Score=110.17 Aligned_cols=411 Identities=12% Similarity=0.060 Sum_probs=212.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh---hhHHHHHHHHHhcC
Q 006437 124 LFLRIYWRGEMYGMVLEAFDEMGRFGFTPN-TFARNIVMDVLFKIGRVDLGIKVLKETQLPNF---LSFNIALCNLCKLN 199 (645)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g 199 (645)
....-|.++|.+++|++.|.+.+.. .|+ +..|.....+|...|+|+.+.+.--+..+-++ ..+..-.+++-+.|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445677888999999999988876 566 78888888888889998888887666553332 34555566677777
Q ss_pred CcchHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437 200 DVSNVKDVIGMMV-RKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT-L--GTSLSVNAWTVLIDGFRRLRRLDMAG 275 (645)
Q Consensus 200 ~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~li~~~~~~~~~~~a~ 275 (645)
++++|+.=..-.. -.|+. +..+--.+=+.+-+ .|++-.++-.+ . ..-|+....++....+...
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~------- 264 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD------- 264 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-------
Confidence 7777754333221 11221 11111111111111 11111211111 1 1234443333333322110
Q ss_pred HHHHHHHHcCCCCChhchHHHHHHHHh--cC---ChhHHHHHHHHHHhC-CCC-----CCHh------hHHHHHHHHHhc
Q 006437 276 YLWEKMVQNGCSPNVVTYTSLIKGFME--AK---MFSIAFSFLDMLESE-GHA-----PDLV------FHNVLIDCLSKM 338 (645)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~~~~~-~~~-----~~~~------~~~~ll~~~~~~ 338 (645)
.......+...+...+..++.. .+ .+..|.+.+.+-... -.. .|.. +.......+.-.
T Consensus 265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000111111111111110 11 222222222221100 000 0111 111111122334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006437 339 GSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTM 418 (645)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 418 (645)
|+.-.|..-|+..++....+ ...|--+..+|....+.++....|++.
T Consensus 340 g~~~~a~~d~~~~I~l~~~~---------------------------------~~lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAF---------------------------------NSLYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred CCchhhhhhHHHHHhcCccc---------------------------------chHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 56666666666666532211 111444445566667777777777766
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437 419 LDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498 (645)
Q Consensus 419 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 498 (645)
.+.+ +-++.+|..-.+...-.+++++|..=|++.++..+. +...|-.+.-+..+.+++++++..|++.+++ +|..+.
T Consensus 387 ~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E 463 (606)
T KOG0547|consen 387 EDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE 463 (606)
T ss_pred HhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence 6643 223445555555555566677777777776666554 5555556666666677777777777776654 455566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-------AYTY--RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT 569 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 569 (645)
.|+.....+...++++.|.+.|+...+ +.|+ ..++ -.++..-. .+++..|.+++.+..+.+++ ....
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A 539 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQA 539 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHH
Confidence 777777777777777777777777665 3333 1111 11111111 26777777777777765544 4456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 570 SIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 570 ~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
|..|.....+.|+.++|+++|++..
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777777777777777654
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.3e-13 Score=131.38 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006437 400 SYFCKAGFPNQAVKLYNTMLDKG-FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRC 478 (645)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 478 (645)
..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++..|. +..+...++..+...|+.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDY 196 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCh
Confidence 33344444444444444433221 1223334444444444555555555555555544443 444444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
+++.++++...+.. +.|...|..+..+|...|+.++|+..+++..... +.|+.+...+..++...|+.++|.++.+++
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55555554444332 3344455555555555555555555555555421 224555555555555555555555555544
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=4e-08 Score=96.02 Aligned_cols=519 Identities=9% Similarity=0.051 Sum_probs=330.7
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437 54 HSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE 133 (645)
Q Consensus 54 ~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 133 (645)
.+.+..+++...-...|+.+...-+.......|...+..... .+-++.+.+++++..+. ++..-...|..++..+
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~-~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVES-HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh-CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhcc
Confidence 355667888888888998888877766667789888888888 78899999999998775 4444677788889999
Q ss_pred ChHHHHHHHHHHhhC------CCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcC--CCCh--hhHHHHHHHHHhcCC
Q 006437 134 MYGMVLEAFDEMGRF------GFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQ--LPNF--LSFNIALCNLCKLND 200 (645)
Q Consensus 134 ~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~--~~~~--~~~~~ll~~~~~~g~ 200 (645)
+.++|.+.+..+... ..+.+-..|.-+.+..++.-+ --....++..+. -+|. ..|..|...|.+.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 999999999988632 124555677777776665432 223344555544 2343 468999999999999
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcCC-------
Q 006437 201 VSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG----------------------RIAEAYQLLGLMITLGT------- 251 (645)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~------- 251 (645)
+++|.++|++..+. ..+..-|..+.++|+.-. +++-...-|+.+.....
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999998765 234455566666665322 12223333444333211
Q ss_pred ----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhchHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437 252 ----SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN------VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH 321 (645)
Q Consensus 252 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (645)
+.++..|..-+. ...|+..+-...|.+.... +.|- ...|..+.+.|-.+|+++.|..+|++..+-..
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 112333333222 2346667777777777653 2222 34577888889999999999999999877644
Q ss_pred CCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHhhHHHHHHHHHhcCCcccHHH
Q 006437 322 APD---LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVP-----------------DSYTFCSLLSTVCLSGRFSLLPK 381 (645)
Q Consensus 322 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~~~~a~~ 381 (645)
+-- ..+|......=.+..+++.|+++.++.....-.| +..+|...++..-..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 321 2344444455556778888888887765321111 12233334444445555555555
Q ss_pred HHhcC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHH---cCCCHHHHHHHHHH
Q 006437 382 LVCGL---E-VEADLV-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YSFVGLLRGLC---GARKIDEAINVYQG 452 (645)
Q Consensus 382 ~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~~~~~~a~~~~~~ 452 (645)
+++.+ . ..|-.+ -|..+ +-.+.-++++.++|++-+..--.|+. ..|+..+.-+. ....++.|..+|++
T Consensus 499 vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 55321 1 122211 12222 33456678888888765554334443 34555444443 24578999999999
Q ss_pred HHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437 453 IVMNNPAVNAH--VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV 528 (645)
Q Consensus 453 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 528 (645)
..+ +..|... +|-.....--+-|....|+.+++++... +++. ...||..|.--...=-+.....+|++..+ .
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~ 651 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--S 651 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--h
Confidence 998 4333221 2222233334568888999999997643 3432 46788888665554445667788888887 4
Q ss_pred CCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 529 PPNAYTYRVML---LSFCKERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 529 ~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
-|+...-...+ ..=++.|..+.|+.++..-.+ .++..+...|...-..-.++|+-+...+.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 67766544433 344788999999999987765 46666888899988888999985544333
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.7e-10 Score=102.90 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=131.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 006437 98 GRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVL 177 (645)
Q Consensus 98 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 177 (645)
++.+.|.++|-+|.+.. +-+.++..+|-+.|.+.|.++.|+.+++-+.+. ||...-..+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~----------------- 107 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL----------------- 107 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH-----------------
Confidence 44555666666555532 223444455555555556666666666555542 222111110
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---
Q 006437 178 KETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS--- 254 (645)
Q Consensus 178 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 254 (645)
...-.|..-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|..+-+++.+.+.++.
T Consensus 108 --------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 108 --------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred --------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 112233445666666777777776666543 12344566667777777777777777776666544432
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006437 255 -VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLID 333 (645)
Q Consensus 255 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 333 (645)
...|.-+...+....+.+.|...+.+..+.+ +..+..-..+-+.....|+++.|.+.++...+.+..--..+...+..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 1245555555556677777777777766543 22333444455666777777777777777777654444556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006437 334 CLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~ 354 (645)
+|...|+.++....+..+.+.
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHc
Confidence 777777777777777776664
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=4.4e-10 Score=103.63 Aligned_cols=292 Identities=12% Similarity=0.084 Sum_probs=179.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHH
Q 006437 233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF 312 (645)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (645)
.|++..|++....-.+.+.. ....|..-.++.-..||.+.+-.++.+..+..-.++...+-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999999998877644 35566777788889999999999999998753345566677777888999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCH
Q 006437 313 LDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL 392 (645)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (645)
+.++.+.+.. ..........+|.+.|++.....++..+.+.|.-.+...-. -..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-------------------------le~ 229 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-------------------------LEQ 229 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------------HHH
Confidence 9998887654 55677888899999999999999999999987544322110 012
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL 472 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (645)
.+|+.+++-....+..+.-...|+....+ .+.++..-..++.-+.+.|+.++|.++.++..+++.++.. ...-.+
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 24444544444444444444455444332 2333444445555555556666666665555555544331 111122
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
.+.++.+.-.+..++..+.. +.++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence 33444444444444443331 23344555555555555555555555554444 3455555555555555555555555
Q ss_pred HHHHHHH
Q 006437 553 RLLQDVI 559 (645)
Q Consensus 553 ~~~~~~~ 559 (645)
+..++..
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555443
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.7e-11 Score=120.03 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCcc-cHHHH
Q 006437 306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELK--LVPDSYTFCSLLSTVCLSGRFS-LLPKL 382 (645)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~-~a~~~ 382 (645)
..+|...|..+... +.-+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+.-... .|.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555554333 11122344445566666666666666666665521 1123345554443332211111 12222
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 006437 383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVN 461 (645)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (645)
... .+..+.+|.++-.+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...++ +
T Consensus 414 i~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 414 IDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred Hhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 221 1335788999999999999999999999998875 44 6778888888888888999999999887654433 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
-..|-.+.-.|.+.++++.|+-.|+++.+.+ |.+.+....+...+.+.|+.++|+++++++.. +.| |+..-...+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHH
Confidence 3344457788999999999999999998876 55677778888888899999999999999887 344 6666666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.+...+++++|.+.++++++.-++ +...|..++..|.+.|+.+.|+.-|.-|.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 778889999999999999886544 6778888999999999999999888888743
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.6e-10 Score=100.24 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=85.1
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---HHhHHHHHHHHHhcCCHHHH
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS---VNAWTVLIDGFRRLRRLDMA 274 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 274 (645)
.++.++|.++|-+|.+.. +-+..+-.+|.+.|-+.|++|.|+.+.+.+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466777888887777642 22344556677777777888888888877765311110 11333445556666666666
Q ss_pred HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL----VFHNVLIDCLSKMGSYDDALDVYDG 350 (645)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (645)
+.+|..+.+.| ..-......|+..|-..++|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 66666666543 123344555666666666666666666655554332221 1222333333334445555555554
Q ss_pred HHH
Q 006437 351 LLE 353 (645)
Q Consensus 351 ~~~ 353 (645)
..+
T Consensus 206 Alq 208 (389)
T COG2956 206 ALQ 208 (389)
T ss_pred HHh
Confidence 444
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.6e-09 Score=101.13 Aligned_cols=281 Identities=13% Similarity=0.106 Sum_probs=181.1
Q ss_pred ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS 368 (645)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 368 (645)
+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33334444445556677777777777766652 334444555555666777766666665666553 2334556666666
Q ss_pred HHHhcCCcccHHHHHh-cCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006437 369 TVCLSGRFSLLPKLVC-GLEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEA 446 (645)
Q Consensus 369 ~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 446 (645)
-|...|+.++|++.|. .....|. ...|-.+...|+-.|..++|+..+...-+. ++-....+-.+.--|.+.++++.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 6666677777777772 2233333 346777777788888888888888776653 111222233344456777888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006437 447 INVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--Y----PLDVVSYTVAIRGLLEGGRTEEAYILY 520 (645)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 520 (645)
.++|.+.....|. |+.+.+-+.-.....+.+.+|...|+..+..- + +--..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 8888888776665 77777777777777788888888887766220 0 012345777888888888888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437 521 SQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF 576 (645)
Q Consensus 521 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 576 (645)
++.+... +-+..++.++.-.|...|+++.|.+.|.+... +.|+-.+-..++..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 8877632 33777888888888888888888888887765 44555444444443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.4e-09 Score=103.02 Aligned_cols=501 Identities=12% Similarity=0.081 Sum_probs=296.7
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM 161 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (645)
+..-+..+.+-+.. ..++..|.-+-++....+. ++..-.-+.+++.-.+.++.|..+...-.-. ..|..+.....
T Consensus 15 s~~~~~~~~r~~l~-q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALM-QHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 45555555554444 4566666666666655543 3333344556666666666666655543221 34555555666
Q ss_pred HHHHhcCCHhHHHHHHhhcC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 006437 162 DVLFKIGRVDLGIKVLKETQ-LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAY 240 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 240 (645)
..+.+..+++.|..++.... ..++..|..-=. ...-..+.+. ++.. +......+-.-.+.|....++++|.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHH
Confidence 66666677777777666431 011111100000 0000011111 0000 0111111222234455666788888
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437 241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS----PNVVTYTSLIKGFMEAKMFSIAFSFLDML 316 (645)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (645)
..|.+.... |...|..+...-. . .+-.+.+.|+.+...... -+......+.....-...-+.....-.+.
T Consensus 162 ~~Y~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 162 DKYKEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 888777643 4444433322111 0 111122222222211000 01111111111110000000000000001
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCC-CHHH
Q 006437 317 ESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEA-DLVV 394 (645)
Q Consensus 317 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~ 394 (645)
.-.+..-+......-..-+...+++.+..++.+.+.+. .++....+..-|..+...|+......+-.++ ..-| ...+
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence 11123335555555666778889999999999998875 3445555555566777777755433332111 1233 4678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
|-++.-.|...|+.++|.+.|.+...- .|. ...|.....+|+..+.-+.|...+....+.-+.... -+--+.--|.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~ 391 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYM 391 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHH
Confidence 888888888889999999999987653 222 456788888999999999999999887765332111 1223445678
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC----CHHHHHHHHHHHHhcCC
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI--AVPP----NAYTYRVMLLSFCKERN 547 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~g~ 547 (645)
+.+++..|.+.|.++.... |.|+...+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8999999999999998764 667888888888888889999999999987621 0111 34578999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHhhh
Q 006437 548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS 611 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~ 611 (645)
+++|+..+++.+....+ +..++.+++-.|...|+++.|++.|.+.+ .++|+.. +..-+.
T Consensus 471 ~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~--~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNI--FISELL 529 (611)
T ss_pred HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccH--HHHHHH
Confidence 99999999999988766 89999999999999999999999999998 7899987 444443
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=3.8e-08 Score=96.49 Aligned_cols=460 Identities=11% Similarity=0.023 Sum_probs=249.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437 86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF 165 (645)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (645)
|..++..|-. +++...+.+.+.+.+ +.+-..+|.....-.+...|+.++|........+.. ..+.++|..+.-.+-
T Consensus 11 F~~~lk~yE~--kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYET--KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH--HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 4444444444 566666666666655 334455555555445566777778877777766644 446667777776777
Q ss_pred hcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 006437 166 KIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQ 241 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 241 (645)
...++++|++.|.... +.|...|.-+.-.-++.|+++.....-.+..+. .| ....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888887654 455566666666666777777777777766664 23 34456777777777788888888
Q ss_pred HHHHHHHcC-CCcCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437 242 LLGLMITLG-TSLSVNAWTVLI------DGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD 314 (645)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (645)
+++...+.. ..|+...|.... ....+.|.++.|.+.+..-... +.-....-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888777653 235554444332 2234566666666665544322 11111222233445666777777777777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCH
Q 006437 315 MLESEGHAPDLVFHNVLIDCLS-KMGSYDDAL-DVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADL 392 (645)
Q Consensus 315 ~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (645)
.+... .||...|...+..+. +-.+.-++. .+|....+.- |... .|--
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e---------------------------~p~R 292 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHE---------------------------CPRR 292 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccc---------------------------cchh
Confidence 77765 355555554443333 222222222 4454443321 1000 0000
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH----HcC----------C
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV----MNN----------P 458 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~ 458 (645)
.. ++......-.+..-.++..+.+.|+++-... +...+-.....+-..++.-.+. ..+ -
T Consensus 293 lp----lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 293 LP----LSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cc----HHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 00 0000011223334455566666665543222 2222222111111111111111 110 1
Q ss_pred CCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437 459 AVNAHVHT--AIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY 535 (645)
Q Consensus 459 ~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 535 (645)
.|....|. .++..|-+.|+++.|...++..+.+ +|+ +..|-.=.+.+...|++++|..++++..+.+ .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 33333333 3667777888888888888877754 455 3455555677778888888888888887754 4555444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--C---HH-HHH--HHHHHHHhcCChhHHHHHHHHH
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDARIEL--D---YH-TSI--RLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~-~~~--~l~~~~~~~g~~~~A~~~~~~m 593 (645)
..-..-..+++..++|.++.....+.|... + .. .|- .=+.+|.+.|++..|++=|..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 444555566778888888877777665410 0 00 111 1124566676666666544443
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.5e-09 Score=96.65 Aligned_cols=445 Identities=11% Similarity=0.083 Sum_probs=208.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006437 90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL-FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIG 168 (645)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 168 (645)
+.-+.. ++++..|+.+++.-...+-. ..+.... +..++.+.|++++|...|..+.... .++...+..|...+.-.|
T Consensus 29 Ledfls-~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLS-NRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHh-cccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 444444 58889999888876654422 2223333 3445567889999999888887644 566666666666666677
Q ss_pred CHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 169 RVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
.+.+|..+-.+.+. ++..-..+...-.+.|+-++...+-+.+... ...-.+|.......-.+.+|..++..+..
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888777665432 2223333444444555555555544444321 11122233333333345666666666554
Q ss_pred cCCCcCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437 249 LGTSLSVNAWTV-LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327 (645)
Q Consensus 249 ~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (645)
. .|.....|. +.-+|.+.+-++-+.++++.-.+. ++.+....|.......+.=.-..|++-.+.+.+.+-. .
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 3 222222222 223445555555555555554433 1122222332222222222222233323333222110 0
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHH
Q 006437 328 HNVLIDCLSKMG-----SYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYF 402 (645)
Q Consensus 328 ~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 402 (645)
|. .+.-.++.+ +-+.|++++-.+.+. .| ..--.++-.|
T Consensus 253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP----------------------------------EARlNL~iYy 295 (557)
T KOG3785|consen 253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP----------------------------------EARLNLIIYY 295 (557)
T ss_pred ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch----------------------------------Hhhhhheeee
Confidence 11 111222211 233444444333321 11 1112233345
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HcCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcC
Q 006437 403 CKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGL-----CGARKIDEAINVYQGIVMNNPAVNAH-VHTAIVDRLIEAG 476 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 476 (645)
.+++++++|..+.+++.. ..|-......++.+- .....+.-|.+.|...-+++...|.. --.++..++.-..
T Consensus 296 L~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred cccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 566666666666555422 122222222222211 11123444555555544443322221 1233444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 006437 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM-LLSFCKERNIKMVKRLL 555 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~ 555 (645)
++++.+..++.+..-=...|...| .+..+++..|++.+|+++|-......++ |..+|.++ .++|.+.|..+.|..++
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 566666666655443212222222 3556666667777777776665443222 34444433 34446666666665543
Q ss_pred HHHHHCCCCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 556 QDVIDARIELDYHT-SIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 556 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
++.+...+..+ ...+.+-|.+++.+--|-+.|+.+.
T Consensus 452 ---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 452 ---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred ---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33222223332 2333355666666666666666665
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.2e-10 Score=114.14 Aligned_cols=283 Identities=18% Similarity=0.152 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhchHHHHHHHHhcCChhHHHHH
Q 006437 235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG--CSPNVVTYTSLIKGFMEAKMFSIAFSF 312 (645)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (645)
+..+|...|..+... ..-+..+...+..+|...+++++|+++|+.+.+.. ..-+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 445666666664433 22233555566667777777777777777766532 011445555555443221 11111
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCC-
Q 006437 313 L-DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEA- 390 (645)
Q Consensus 313 ~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 390 (645)
+ +.+.+. -+-...+|.++.++|.-.++.+.|++.|++..+. .|
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----------------------------------dp~ 453 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----------------------------------DPR 453 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------------------------CCc
Confidence 1 111111 1224456666777777777777777777666552 23
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYS---FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTA 467 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 467 (645)
...+|+.+-.-+.....+|.|...|+..+. .|... |..+...|.+.++++.|+-.|+++++.++. +..+...
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhh
Confidence 344555555566677778888888887654 34433 445666788899999999999998888877 7777778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER 546 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 546 (645)
+...+.+.|+.++|+++++++.... +-|+..--..+..+...++.++|+..++++++ +.| +...+..+...|.+.|
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHc
Confidence 8888899999999999999988775 33555544556667778899999999999998 667 5677888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCc
Q 006437 547 NIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~~~~~ 565 (645)
+.+.|+.-|.-+.+.++++
T Consensus 606 ~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDPKG 624 (638)
T ss_pred cchHHHHhhHHHhcCCCcc
Confidence 9999998888887765553
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.5e-08 Score=91.82 Aligned_cols=447 Identities=12% Similarity=0.089 Sum_probs=249.6
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437 57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG 136 (645)
Q Consensus 57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (645)
+....++.-|..+++....... ......+.-|..+.-.-|++++|...+..+.... .++......+.-.+.-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 4456688889999888765433 1222334444434333699999999999887754 466666666666666678889
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437 137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF 216 (645)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 216 (645)
+|..+-... +.++..-..|++.-.+.++-++...+-+.+.... ..--++.+..-..-.+++|++++......+
T Consensus 109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 998877654 3345555566677777788777766665554221 222344444445567899999999998763
Q ss_pred CCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHH
Q 006437 217 YPNVRMFEILLN-CFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS 295 (645)
Q Consensus 217 ~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 295 (645)
|+-...+.-+. +|.+..-++-+.++++...+. ++.+...-|.......+.=.-..|+.-..++...+-. .| .
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~ 254 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-P 254 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-h
Confidence 55555555444 456777788888888877765 3434555555544444433333344444555443211 12 2
Q ss_pred HHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 296 LIKGFMEA-----KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 296 li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
.+.-+++. ++-+.|++++-.+.+. .|.. --.++-.|.+.++..+|..+.+++.- ..|-......++ .
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--F 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--H
Confidence 34444444 4567888888777664 2332 23355668899999999998876532 222222222222 2
Q ss_pred HhcCC-------cccHHHHHhcCC---CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437 371 CLSGR-------FSLLPKLVCGLE---VEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG 439 (645)
Q Consensus 371 ~~~~~-------~~~a~~~~~~~~---~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 439 (645)
...|+ ...|.+.|+-.| ...| ...-.++.+.+.-..++++++..++.+..--..-|.+. ..+.++.+.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHH
Confidence 22222 233444442222 1112 22334455555555666666666666555422222222 234556666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVH-TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAY 517 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~ 517 (645)
.|.+.+|+++|-.+....++ +..+| +.+.++|.+++.++.|+.++-++-. +.+..+. ..+..-|.+.+.+--|-
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555433333 33334 3355666666666666665543321 1122222 22334455556666666
Q ss_pred HHHHHHhhCCCCCCHHHH
Q 006437 518 ILYSQMKHIAVPPNAYTY 535 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~ 535 (645)
+.|+.+.. ..|++.-|
T Consensus 482 KAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEI--LDPTPENW 497 (557)
T ss_pred HhhhHHHc--cCCCcccc
Confidence 66666555 34555554
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.3e-09 Score=98.74 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=99.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437 267 RLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALD 346 (645)
Q Consensus 267 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 346 (645)
-.|+.-.|..-|+..++.... +...|.-+...|....+.++.+..|+...+.+.. +..+|..-.....-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 345555555555555543211 1111444445555555555555555555544322 33344444444444445555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006437 347 VYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD 426 (645)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 426 (645)
-|++.+.. .|+ +...|-.+--+..+.+++++++..|++.+++ ++..
T Consensus 416 DF~Kai~L--~pe-------------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~ 461 (606)
T KOG0547|consen 416 DFQKAISL--DPE-------------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNC 461 (606)
T ss_pred HHHHHhhc--Chh-------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 55554432 111 2223333333444455555666666555554 3334
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 006437 427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-------NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVS 499 (645)
Q Consensus 427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 499 (645)
+..|+.....+...++++.|.+.|+..+...+.. .+.+..+++-.-. .+++..|..++++..+.. |.....
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A 539 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQA 539 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHH
Confidence 4555555555555566666666655555443221 1111112221111 144555555555544433 122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
|..|...-.+.|+.++|+++|++.
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444445555555555555543
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=3.2e-09 Score=98.71 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 35677788889999999999999999988763 334667778888899999999999999999987765 5667888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNI 548 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~ 548 (645)
.+...|++++|.+.++++..... +.....+..+...+...|++++|...+++..+. .| +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999987532 224556777888999999999999999999874 44 567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
++|...+++..+.. ..++..+..++..+...|+.++|.++.+.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998763 34677777888999999999999999888764
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.1e-07 Score=84.47 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=160.7
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 006437 251 TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV-VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHN 329 (645)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (645)
++-|+.....+...+...|+.++|...|+..... .|+. .......-.+.+.|++++...+...+.... +.+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3445555666666666666666666666655542 1211 111112222344555555555555554431 11222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437 330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN 409 (645)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (645)
.-.......++++.|+.+-++.++.. ..+...|-.--..+...|+++
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~---------------------------------~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE---------------------------------PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC---------------------------------cccchHHHhccHHHHhccchH
Confidence 22333334455555555555444321 112222322234566778888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 006437 410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV-DRLI-EAGRCHKAIQLFRR 487 (645)
Q Consensus 410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~ 487 (645)
+|.-.|+..+... +.+...|..|+.+|...|++.+|..+-+...+.-+. +..+.+.+. ..+. ...--++|.+++++
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 8888888777642 345678888888888888888887776665554322 444444332 2221 22235678888877
Q ss_pred HHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 488 AIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 488 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
.+... |+ ....+.+...+...|..++++.++++... ..||....+.|.+.+...+.+++|.+.|..+.+.+++
T Consensus 430 ~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 430 SLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 76653 44 55667777778888888888888888776 6788888888888888888888888888888775544
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=5.1e-07 Score=88.83 Aligned_cols=431 Identities=15% Similarity=0.129 Sum_probs=266.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 006437 121 TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL---PNFLSFNIALCNLCK 197 (645)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 197 (645)
.|..++..| ..+++...+...+.+.+ +.+....+.....-.+...|+-++|......... .+.+.|..+.-.+-.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 355555554 56677778888877776 3344445554444445667888888888877653 445678888877778
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYL 277 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 277 (645)
..++++|++.|......+ +-|...+.-+.-.=++.++++.....-..+.+.. +.....|..+..++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887764 3355666666666667777777776666666542 22445677777778888888888888
Q ss_pred HHHHHHcC-CCCChhchHHHHH------HHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 006437 278 WEKMVQNG-CSPNVVTYTSLIK------GFMEAKMFSIAFSFLDMLESEGHAPDLV-FHNVLIDCLSKMGSYDDALDVYD 349 (645)
Q Consensus 278 ~~~m~~~~-~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~ 349 (645)
+++..+.. ..|+...|..... ...+.|.++.|++.+..-... + .|.. .-..-...+.+.++.++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88887653 2455555543332 345567777777766654433 1 1222 22334456677788888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHh
Q 006437 350 GLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYNTMLDKGFTPDNY 428 (645)
Q Consensus 350 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~ 428 (645)
.++.. .||..-|. ..+..++.+-.+..++. .+|....+. .|...
T Consensus 244 ~Ll~r--nPdn~~Yy-------------------------------~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e 288 (700)
T KOG1156|consen 244 RLLER--NPDNLDYY-------------------------------EGLEKALGKIKDMLEALKALYAILSEK--YPRHE 288 (700)
T ss_pred HHHhh--CchhHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccc
Confidence 88774 23333322 22223332222233333 555555443 11111
Q ss_pred hHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------C
Q 006437 429 SFVGL-LRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI----VEK----------Y 493 (645)
Q Consensus 429 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~ 493 (645)
.-..+ +.......-.+....++..+.+.|+.+- +..+...|-.....+-..++.-.+. ..| -
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 11111 1111222334445566666777775532 3333333332222211111111111 110 1
Q ss_pred CCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437 494 PLDVVSYT--VAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY-TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS 570 (645)
Q Consensus 494 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 570 (645)
+|....|. .++..+-+.|+++.|..+++...+ -.|+.+ -|..=.+.+...|+.++|..++++..+.+.. |...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHH
Confidence 56666565 456678899999999999999987 567754 5556678889999999999999999987653 77776
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006437 571 IRLTKFIFKFHSSSSAVNQLVEMCNLGL 598 (645)
Q Consensus 571 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 598 (645)
..-+.-..++++.++|.++.....+.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6888888999999999999999988775
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.6e-10 Score=100.85 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=177.7
Q ss_pred HHHHhcCCcccHHHHH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHcCCCHHH
Q 006437 368 STVCLSGRFSLLPKLV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV-GLLRGLCGARKIDE 445 (645)
Q Consensus 368 ~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~ 445 (645)
++|.+.|.+.+|.+.+ ..+...|.+.+|-.+-.+|.+..++..|+.++.+-.+. .|-.+||. .+...+...++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHH
Confidence 3344444444444433 22234566677778888888999999999999888775 45555553 45566677788999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
|.++|+...+..+. +.....++...|.-.++++-|+..++++++.|+ -++..|+.+.-+|.-.++++-++.-|++.+.
T Consensus 309 a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 99999988877654 666677778888888999999999999999984 4788899999999999999999999999886
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 526 IAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 526 ~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.--.|+ ..+|..+.......||+..|.+-|+.....+.. ....++.|.-.-.+.|++++|..++.... .+.|+..
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~--s~~P~m~ 463 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK--SVMPDMA 463 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh--hhCcccc
Confidence 554454 457888888888899999999999998877665 78899999999999999999999999987 3556544
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2e-11 Score=80.89 Aligned_cols=50 Identities=38% Similarity=0.765 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 495 LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 495 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.4e-11 Score=80.44 Aligned_cols=50 Identities=44% Similarity=0.873 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG 439 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 439 (645)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.2e-07 Score=87.26 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHH--HHHHHH--hcCCc
Q 006437 126 LRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNI--ALCNLC--KLNDV 201 (645)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--ll~~~~--~~g~~ 201 (645)
+..+...+++++|.+...++...+ +.+..++.+-+.++.+.+++++|+.+.+.-.... +++. +=.+|| +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccH
Confidence 344555566666666666666554 4455555555556666666666665544332111 1111 223333 45666
Q ss_pred chHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437 202 SNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLG 250 (645)
Q Consensus 202 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (645)
++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66666655 2222 22344444555666666666666666665543
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=9.3e-09 Score=107.43 Aligned_cols=146 Identities=10% Similarity=-0.111 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 006437 135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMM 211 (645)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 211 (645)
+++|...+++..+.+ +.+..++..+..++...|++++|...|++.. +.+...+..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555555555443 3344444445455555555555555555433 222334444444555555555555555555
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 212 VRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 212 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
.+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 444211 1112222222333445555555555554433211123334444444555555555555555443
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2.3e-06 Score=86.15 Aligned_cols=427 Identities=13% Similarity=0.058 Sum_probs=266.5
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC---CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CH
Q 006437 145 MGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL---PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NV 220 (645)
Q Consensus 145 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~ 220 (645)
+....+.-+...|..|.-++..+|++..+.+.|++..+ .....|+.+...+...|.-..|..+++.-....-.| |.
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33344556788888888889999999999999998653 344578888888889999999999998776543234 34
Q ss_pred hhHHHHHHHHHh-cCCHHHHHHHHHHHHHc--C--CCcCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHc
Q 006437 221 RMFEILLNCFCK-MGRIAEAYQLLGLMITL--G--TSLSVNAWTVLIDGFRRL-----------RRLDMAGYLWEKMVQN 284 (645)
Q Consensus 221 ~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~ 284 (645)
..+...-+.|.. .+..+++..+-.++.+. + -......|..+.-+|... ....++...+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 444444455544 36677776666666542 1 112334455444444321 1234566777777654
Q ss_pred CCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhH
Q 006437 285 GCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL-KLVPDSYTF 363 (645)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 363 (645)
+ +-|.....-+.--|+..++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |. |-...
T Consensus 474 d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 474 D-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred C-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 3 12333333344456778899999999999888766668888888888888899999999988876652 21 00000
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH------HcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHHH
Q 006437 364 CSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC------KAGFPNQAVKLYNTMLDK-G-FTPDNYSFVGLLR 435 (645)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~------~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~ 435 (645)
..-++.-...++.+++... ...++..+- ..++-...++....+.-. + ..-...++..+..
T Consensus 551 ~~~~~i~~~~~~~e~~l~t------------~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDT------------CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhhhhhhhcccHHHHHHH------------HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 0111111112333332222 222222211 111111122222221110 0 0111223333322
Q ss_pred HHHcCC---CHHHHHHHHHHHHHcC--CCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437 436 GLCGAR---KIDEAINVYQGIVMNN--PAVN------AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504 (645)
Q Consensus 436 ~~~~~~---~~~~a~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 504 (645)
-....+ ..+.. +.... +.|+ ...|......+.+.+..++|..-+.+..... +-....|....
T Consensus 619 l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G 691 (799)
T KOG4162|consen 619 LVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRG 691 (799)
T ss_pred HHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhh
Confidence 221110 11111 11111 1222 2345567778888999999988887776553 44667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKR--LLQDVIDARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g 581 (645)
..+...|..++|.+.|..... +.|+ ......+...+...|+...|.. ++..+.+.++. +...|..|+..+.+.|
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcc
Confidence 888889999999999999988 6774 6688899999999998888887 99999998766 8999999999999999
Q ss_pred ChhHHHHHHHHHHHC
Q 006437 582 SSSSAVNQLVEMCNL 596 (645)
Q Consensus 582 ~~~~A~~~~~~m~~~ 596 (645)
+.++|.+.|....+.
T Consensus 769 d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 769 DSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999998754
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=4e-07 Score=91.33 Aligned_cols=427 Identities=17% Similarity=0.059 Sum_probs=270.4
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--C--CC-hh
Q 006437 112 RVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--L--PN-FL 186 (645)
Q Consensus 112 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~--~~-~~ 186 (645)
......++..|..+.-+..+.|+++.+.+.|++....- -.....|+.+-..|..+|.-..|..+++... . |+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33445678889888889999999999999999987543 3456788888889999999999999998754 2 32 23
Q ss_pred hHHHHHHHHH-hcCCcchHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcC
Q 006437 187 SFNIALCNLC-KLNDVSNVKDVIGMMVRK--GF--YPNVRMFEILLNCFCKM-----------GRIAEAYQLLGLMITLG 250 (645)
Q Consensus 187 ~~~~ll~~~~-~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~ 250 (645)
.+-..-..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 347778888777766551 11 12334555555555432 13456778888887764
Q ss_pred C-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhH
Q 006437 251 T-SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE-GHAPDLVFH 328 (645)
Q Consensus 251 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 328 (645)
. .|++..| +.--|+..++++.|.+...+..+.+-.-+...|..+...+...+++.+|+.+.+...+. |. |-...
T Consensus 475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 3 3433333 33456788999999999999998755668899999999999999999999999887654 21 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCC-----CCCHHHHHHHHHHH
Q 006437 329 NVLIDCLSKMGSYDDALDVYDGLLEL-KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEV-----EADLVVYNALLSYF 402 (645)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~ 402 (645)
..-+..-...++.+++......+..- .-.+.+ ...++-....+....+.. .....++..+..-.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 11222233356677766665555431 000000 001111111222211111 11122222222211
Q ss_pred HHcC---ChHHHHHHHHHHHHCCCCCCH--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 403 CKAG---FPNQAVKLYNTMLDKGFTPDN--------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 403 ~~~g---~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
...+ ..+.. |....+.|+. ..+......+...+..++|...+.+.....+. ....|......
T Consensus 621 a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~ 693 (799)
T KOG4162|consen 621 ASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLL 693 (799)
T ss_pred Hhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHH
Confidence 1111 11111 2211122221 12334455667778888888777777655433 56667777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI--LYSQMKHIAVPP-NAYTYRVMLLSFCKERNI 548 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~ 548 (645)
+...|.+++|.+.|......+ |.++...+++...+.+.|+..-|.. ++..+.+ +.| +...|..+...+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccch
Confidence 888899999999998888765 4457788889999999998877777 8888888 445 788999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q 006437 549 KMVKRLLQDVIDARI 563 (645)
Q Consensus 549 ~~a~~~~~~~~~~~~ 563 (645)
+.|.+.|+...+...
T Consensus 771 ~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 771 KQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999998876543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=6e-09 Score=108.83 Aligned_cols=248 Identities=10% Similarity=0.020 Sum_probs=177.8
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437 62 SDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRL--------TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE 133 (645)
Q Consensus 62 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 133 (645)
+.+.|+.+|+.+....+ .++..|..+..++... .+++++|...+++..+.. +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 46799999999887655 4566676665544321 245789999999998876 457788888888899999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCC-hhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437 134 MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPN-FLSFNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
++++|...|++..+.+ +.+...+..+..++...|++++|+..+++.. .|+ ...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999875 5567888999999999999999999999875 333 23344445556778999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 006437 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNG-CSPN 289 (645)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~ 289 (645)
..+...+-+...+..+..++...|+.++|...+..+.... +.+....+.+...|...| +.|...++.+.+.. ..+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 8765422245567778888899999999999999876542 223445566666777777 47777777766431 1222
Q ss_pred hhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437 290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESE 319 (645)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (645)
...+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2223 33334445565555555 666654
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.9e-06 Score=80.21 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=206.5
Q ss_pred HHHHhcCCcchHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHhcCC
Q 006437 193 CNLCKLNDVSNVKDVIGMMVRKG-FYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS-VNAWTVLIDGFRRLRR 270 (645)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 270 (645)
.+.+-.++-..+...+-.+.... ++-|......+.+.+...|+.++|+-.|+.....+ |+ ...-....-.+.+.|+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccC
Confidence 34455666666666665554333 45577788999999999999999999999987643 22 1111112223457888
Q ss_pred HHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 271 LDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDG 350 (645)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (645)
++....+...+.... .-+...|-.-.......++++.|+.+-+...+.... +...|-.-...+...++.++|.-.|..
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence 888888888776531 123444555555666788999999998887765322 344454445678889999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH
Q 006437 351 LLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF 430 (645)
Q Consensus 351 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 430 (645)
.+.. .| -+..+|.-++..|...|++.+|.-.-+...+. ++.+..+.
T Consensus 360 Aq~L--ap-------------------------------~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 360 AQML--AP-------------------------------YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred HHhc--ch-------------------------------hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 7763 22 24556666777777777777776665554443 23344555
Q ss_pred HHHH-HHHH-cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 431 VGLL-RGLC-GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 431 ~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
..+. ..|. ....-++|..+++...+..|. -....+.+...+...|..+++..++++.+.. .||....+.|...+.
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 4442 2222 233457889999888777665 4556678888999999999999999998875 489999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPNA 532 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~~ 532 (645)
..+.+++|.+.|..... +.|+.
T Consensus 483 A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HhhhHHHHHHHHHHHHh--cCccc
Confidence 99999999999999988 56743
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=7.7e-09 Score=96.10 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHH
Q 006437 120 QTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLC 196 (645)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~ 196 (645)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.. +.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 334444444455555555555555544332 2233444444444444444444444444332 122223333334444
Q ss_pred hcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAG 275 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 275 (645)
..|++++|.+.+++..+....+ ....+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444444443321111 12233334444444555555555555444432 112334444444444445555555
Q ss_pred HHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHH
Q 006437 276 YLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDML 316 (645)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (645)
+.+++..+. .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444433 1222333333344444444444444444433
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.2e-09 Score=94.93 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=171.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437 294 TSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373 (645)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 373 (645)
+-+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..+-+.|.+..++..|+.++.+-.+. .|.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~-------------- 288 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPF-------------- 288 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCc--------------
Confidence 55667777777777777777766665 345556666777777777777777777665552 222
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437 374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI 453 (645)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 453 (645)
++....-+.+.+-..++.++|.++|+...+.. +.+......+...|.-.++.+.|..+|+.+
T Consensus 289 -----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 289 -----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 22223345566667788889999998887753 345556666667777888999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437 454 VMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531 (645)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 531 (645)
...|.. ++..|..+.-+|.-.++++-++.-|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ .-+
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence 988887 788888888888888999999988888876543344 5678888888888899999999999887643 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 532 AYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 532 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
...++.|.-.-.+.|+.+.|..++.......
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 7788888888889999999999998887644
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.5e-08 Score=100.58 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=133.7
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESE-----GH-APDLV-FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF 363 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (645)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++...-..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------ 273 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------ 273 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence 44445666677777777777777665543 21 12222 2334667788889999999999887652000
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-hhHHHHHH
Q 006437 364 CSLLSTVCLSGRFSLLPKLVCGLEVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLD-----KGF-TPDN-YSFVGLLR 435 (645)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~~-~~~~~ll~ 435 (645)
++ . ...|. ..+++.|...|.+.|++++|...++...+ .|. .|.. .-++.+..
T Consensus 274 ------------------~~-G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 274 ------------------VF-G-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ------------------hc-C-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 00 0 01111 23445555556666666666555554432 111 1221 23445555
Q ss_pred HHHcCCCHHHHHHHHHHHHHc---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C---CCChhhHH
Q 006437 436 GLCGARKIDEAINVYQGIVMN---NPAV----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----Y---PLDVVSYT 501 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~ 501 (645)
.|+..+++++|..++....+. -+.+ -..+++.|...|.+.|++++|.+++++++... . .-....++
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 667777777777777755432 1111 23455667777777777777777776665431 1 11133456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh----hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMK----HIAV-PPN-AYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~----~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
.|...|.+.++.++|.++|.+.. ..|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 66666666666666666666532 2221 122 3456666666666666666666666554
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=2.4e-07 Score=93.45 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG 510 (645)
Q Consensus 431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (645)
..+.+.|...|++++|.++++..+.+.|. .+..|..-...+-..|++.+|.+.++...... .-|-..-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 34444455556666666666655555444 34555555556666666666666666655543 22444444555555566
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 511 GRTEEAYILYSQMKHIAVPPNAY------T--YRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p~~~------~--~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
|+.++|.+++......+..|-.. + ..-...+|.+.|++..|++.+..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665444333111 1 1223456667777777666555443
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=2.2e-07 Score=93.79 Aligned_cols=288 Identities=13% Similarity=0.042 Sum_probs=178.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-h-----
Q 006437 264 GFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS-K----- 337 (645)
Q Consensus 264 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~----- 337 (645)
.+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+ |+...|...+..+. -
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554332 22223334445556666666677776666666653 33333333332222 1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHH
Q 006437 338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF-PNQAVKLYN 416 (645)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~ 416 (645)
..+.+...++|+++...- |.......+.- .+..... -..+..++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L--------------------------------~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPL--------------------------------DFLEGDEFKERLDEYLR 135 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhc--------------------------------ccCCHHHHHHHHHHHHH
Confidence 123555666666665432 21111111100 0000001 123455566
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----C----------CCCcHH--HHHHHHHHHHhcCCHHH
Q 006437 417 TMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN----N----------PAVNAH--VHTAIVDRLIEAGRCHK 480 (645)
Q Consensus 417 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~ 480 (645)
.+..+|+++ +|+.+-..|......+-..+++...... + -.|... ++.-+...|...|++++
T Consensus 136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 667777653 3455555555555555555555554432 1 123333 34557888999999999
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 481 AIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 481 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
|++.+++.++.. |+ +..|..-.+.+-+.|++++|.+.++..+... .-|...-+-....+.+.|+.++|.+++....
T Consensus 213 Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 213 ALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999874 65 7788899999999999999999999999854 3477777777888899999999999999998
Q ss_pred HCCCCcCH--------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 560 DARIELDY--------HTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 560 ~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+.+..|.. ......+.+|.+.|++..|++.|....
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 76654422 112455678999999999888776654
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=8.4e-06 Score=79.65 Aligned_cols=445 Identities=13% Similarity=0.081 Sum_probs=243.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH--HHHHHH--
Q 006437 90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI--VMDVLF-- 165 (645)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~-- 165 (645)
++.+.. .+++++|......+...+ +-+.+.+..-+-+..+.+.+++|+.+.+.-.. ..+++. +=.+||
T Consensus 19 ln~~~~-~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGK-NGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhcc-chHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 344445 677888888877777765 45666677777777778888888754443211 111111 234444
Q ss_pred hcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 166 KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP-NVRMFEILLNCFCKMGRIAEAYQLLG 244 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 244 (645)
+.+..++|+..++.....+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-. +... +
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-H
Confidence 56788888888885555555566666677778888888888888887764321 1111111111111 1111 0
Q ss_pred HHHHcCCCcCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------------CCCChh-chHHHHHHHHhcCChh
Q 006437 245 LMITLGTSLSVNAWTVL---IDGFRRLRRLDMAGYLWEKMVQNG-------------CSPNVV-TYTSLIKGFMEAKMFS 307 (645)
Q Consensus 245 ~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~-------------~~~~~~-~~~~li~~~~~~~~~~ 307 (645)
.+......| ..+|..+ ...++..|++.+|+++++.....+ +.-... .-.-+...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 2233332 334567788888888888772211 000000 1112344566778888
Q ss_pred HHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCCHH-HHHHHHHHHHHCC-------C---CCCHhhH-HHHHHHHH
Q 006437 308 IAFSFLDMLESEGHAPDLVF----HNVLIDCLSKMGSYD-DALDVYDGLLELK-------L---VPDSYTF-CSLLSTVC 371 (645)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~~~~-------~---~~~~~~~-~~ll~~~~ 371 (645)
+|..++....+... +|... -|.++..-....-++ .++..++...... + .-..... +.++..|
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888888877643 34322 222222111111111 1111221111000 0 0001111 1222222
Q ss_pred hcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437 372 LSGRFSLLPKLVCGLEVEADLVVYNALLSYFC--KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV 449 (645)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 449 (645)
.+..+.+.++........-...+.+++.... +.....++.+++...-+....-.......+++.....|+++.|.++
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3344455555544333222334444444332 2335777888887776653222234555566677889999999999
Q ss_pred HH--------HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHH----HHHHHhcCCHHH
Q 006437 450 YQ--------GIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE--KYPLDVVSYTVA----IRGLLEGGRTEE 515 (645)
Q Consensus 450 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l----~~~~~~~g~~~~ 515 (645)
+. .+.+.+ ..+.+..+++..+.+.++-+.|-.++.+.+.. ...+.....+++ ...-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 98 333333 34556677888888888877777777766532 011222333333 334457799999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999853 56889999999999876 567776665544
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.3e-07 Score=94.24 Aligned_cols=203 Identities=17% Similarity=0.084 Sum_probs=127.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006437 296 LIKGFMEAKMFSIAFSFLDMLESE-----GH--APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLS 368 (645)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 368 (645)
+...|...+++++|..+|+++... |- +.-..+++.|...|.+.|++++|...++...+---. +.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--------~~- 317 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--------LL- 317 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--------hh-
Confidence 455566666666666666666542 21 112345666667777888887777777665541000 00
Q ss_pred HHHhcCCcccHHHHHhcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcC
Q 006437 369 TVCLSGRFSLLPKLVCGLEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDK---GFTPD----NYSFVGLLRGLCGA 440 (645)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~ 440 (645)
....|.+ ..++.+...++..+++++|..+++...+. -+.++ ..+++.|...|...
T Consensus 318 -----------------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 318 -----------------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred -----------------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 0011111 12344555566677777777766654431 11222 35678888888888
Q ss_pred CCHHHHHHHHHHHHHcC----C---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHH
Q 006437 441 RKIDEAINVYQGIVMNN----P---AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----K--YPLDVVSYTVAIRGL 507 (645)
Q Consensus 441 ~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~ 507 (645)
|++++|.++++.++... . .-....++.+...|.+.+++++|.++|.+.... | .+-...+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 89988888888876542 1 112445677888888888888888888765432 2 122357899999999
Q ss_pred HhcCCHHHHHHHHHHHh
Q 006437 508 LEGGRTEEAYILYSQMK 524 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~ 524 (645)
.+.|+++.|+++.+...
T Consensus 461 ~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHcccHHHHHHHHHHHH
Confidence 99999999999988765
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=8e-08 Score=82.27 Aligned_cols=196 Identities=14% Similarity=0.031 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
+...+.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+-|++.++..++ +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45566778999999999999999999874 335667888888999999999999999999998877 8888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 551 (645)
..|++++|...|++......-+ -..+|..+..+..+.|+.+.|...|++..+ ..| ...+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998763222 367899999999999999999999999998 445 577888999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..+++.....+. ++..+.-..++.-.+.|+.+.|.+.=.++.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999887766 789999899999999999998887766665
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=6.4e-06 Score=83.26 Aligned_cols=226 Identities=10% Similarity=0.065 Sum_probs=146.7
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHc-C-------C-CCCHHHHHHHHHHH
Q 006437 59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARV-G-------C-VIKAQTFLLFLRIY 129 (645)
Q Consensus 59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~-------~-~~~~~~~~~li~~~ 129 (645)
..|+.+.|.+-.+.+ .+-.+|..|.+.+.+ .++.+-|.-++-.|... | . .++ .+=..+....
T Consensus 740 tiG~MD~AfksI~~I-------kS~~vW~nmA~McVk-T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-------KSDSVWDNMASMCVK-TRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EeccHHHHHHHHHHH-------hhhHHHHHHHHHhhh-hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 456777777666555 356789999999999 78888888777776431 1 1 122 2223333344
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCcchHHHHH
Q 006437 130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPN-FLSFNIALCNLCKLNDVSNVKDVI 208 (645)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~ 208 (645)
...|.+++|..+|.+-.+. ..|=+.|-..|.|++|.++-+.-..-. ..||.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 5779999999999988764 345566777899999999887543222 235655566666677777777777
Q ss_pred HHH----------HHCCC---------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC
Q 006437 209 GMM----------VRKGF---------YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR 269 (645)
Q Consensus 209 ~~m----------~~~~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 269 (645)
++. +.... .-|...|.-....+-..|+.+.|+.+|.... .|-++++..|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeecc
Confidence 652 11110 1123334444444445667777777765443 3555666667778
Q ss_pred CHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 270 RLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE 317 (645)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (645)
+.++|-++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888887766542 355666677888888888888888887654
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.6e-06 Score=84.98 Aligned_cols=322 Identities=14% Similarity=0.109 Sum_probs=171.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437 219 NVRMFEILLNCFCKMGRIAEAYQLLGLMITL--GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL 296 (645)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (645)
|+...+..++++...+-..+-.++++.+.-. .+.-+...-|.|+-...+ -+.....++.+++..-+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 3334444455555555555555555555421 111112222333322222 23334444444443221 11 12
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437 297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF 376 (645)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 376 (645)
......++-+++|..+|+... .+....+.++.- .+..+.|.+.-++.. .+.+|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 333444555566666665432 233333333322 234444444433321 345666666666666666
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 006437 377 SLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN 456 (645)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 456 (645)
.+|.+-+-. ..|+..|.-++....+.|.+++-.+++...+++.-.|... +.|+-+|++.+++.+.++++.
T Consensus 1121 ~dAieSyik---adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIK---ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHHHHHHh---cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----
Confidence 666665533 2355666777777777777777777766666554444433 356666777666666555432
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437 457 NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR 536 (645)
Q Consensus 457 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 536 (645)
.|+......+.+-|...|.++.|.-+|. ++.-|..|...+...|++..|....++. .+..||.
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 3445555556666666666666665554 3344666777777777777666554443 2446677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
-+-.+|...+.+..| +|-..++.....-...|++.|...|-+++.+.+++...
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 777777666555433 22233344456666777777777888877777776654
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.7e-05 Score=80.66 Aligned_cols=494 Identities=9% Similarity=0.062 Sum_probs=250.0
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006437 48 LAPHIVHSTLLNCPSDLIALSFFIWCAKQRDY--FHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLF 125 (645)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 125 (645)
.+-..++++..+.|-...|++.|..+..-.+. +.+...=..+...+.+ -.++.+.++++.|...++.-+..+...+
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~--lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGS--LSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34456666677777777788777554332110 0111112234445555 5688999999999988887788888777
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC-----------CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-------------
Q 006437 126 LRIYWRGEMYGMVLEAFDEMGRF-----------GFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ------------- 181 (645)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------------- 181 (645)
..-|...=-.+..+++|+..... ++.-|+.+.-..|.+.++.|++.+..++.++..
T Consensus 685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLke 764 (1666)
T KOG0985|consen 685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 764 (1666)
T ss_pred HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHh
Confidence 77777776667778888776533 346677777788999999999999888765432
Q ss_pred --CC----------------ChhhH------HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh-------------HH
Q 006437 182 --LP----------------NFLSF------NIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-------------FE 224 (645)
Q Consensus 182 --~~----------------~~~~~------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------~~ 224 (645)
-+ |.+.| -..|..|.+.-++...-.+...+...+. +... ..
T Consensus 765 AkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 765 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred ccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChH
Confidence 01 11111 1223334433333322222222222111 1111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHH-HHH---HHHH-----HHH-c----------
Q 006437 225 ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDM-AGY---LWEK-----MVQ-N---------- 284 (645)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~---~~~~-----m~~-~---------- 284 (645)
-|..-.-+.++..--...++.....|.. |+.++|+|...|...++-.+ -++ .|+. ..+ +
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2223333445555555566666666644 66777777666654332111 000 0000 000 0
Q ss_pred -C------------------------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHh
Q 006437 285 -G------------------------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHA--PDLVFHNVLIDCLSK 337 (645)
Q Consensus 285 -~------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 337 (645)
| .+.|...|..++. ..-.--.+++++....++. .|.......+.++..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 0 0011111211110 0000112233333322211 122222333344444
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHH---------------------------HHHhcCCcccHHHHHhcCCC
Q 006437 338 MGSYDDALDVYDGLLELK--LVPDSYTFCSLLS---------------------------TVCLSGRFSLLPKLVCGLEV 388 (645)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~---------------------------~~~~~~~~~~a~~~~~~~~~ 388 (645)
.+-..+-+++++++.-.+ +.-+...-+.|+- .....+-+++|..+|+....
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc
Confidence 444444444444433110 0000001111111 11112223334443322211
Q ss_pred ------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006437 389 ------------------------EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID 444 (645)
Q Consensus 389 ------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 444 (645)
...+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++
T Consensus 1077 n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 123456777777777777777776655322 24556777777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
+-.+++....++.-+|.. -+.|+-+|++.+++.+.++++. .||......+.+-|...|.++.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV- 1220 (1666)
T ss_pred HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-
Confidence 777777666655444333 3567777777777766655432 267666777777777777777666655433
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437 525 HIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 525 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 581 (645)
.-|..|...+...|+++.|...-+++ .+..+|...-.+|...+
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 33566666667777777766554433 24566766666665544
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=1.1e-07 Score=81.54 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=149.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
+...|.-.|...|+...|..-+++.++..+. +..++..+...|.+.|..+.|.+-|++.++.. +.+-.+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4555677899999999999999999998877 78889999999999999999999999999875 557889999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAV 587 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 587 (645)
..|++++|...|++....-.-| -+.||..+..+..+.|+.+.|.+++++.++.+.. .+.....+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988643333 4678999999999999999999999999998766 5667778899999999999999
Q ss_pred HHHHHHHHCCCCCChh
Q 006437 588 NQLVEMCNLGLIPDEM 603 (645)
Q Consensus 588 ~~~~~m~~~g~~p~~~ 603 (645)
..+++....|. ++..
T Consensus 194 ~~~~~~~~~~~-~~A~ 208 (250)
T COG3063 194 LYLERYQQRGG-AQAE 208 (250)
T ss_pred HHHHHHHhccc-ccHH
Confidence 99999987765 5544
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=6.3e-05 Score=85.10 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=90.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHH
Q 006437 397 ALLSYFCKAGFPNQAVKLYNTMLDK----GFT--P-DNYSFVGLLRGLCGARKIDEAINVYQGIVMN----NPAVNAHVH 465 (645)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 465 (645)
.+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... +.......+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 3344455566666666655554331 110 0 1112223333444556666666666554432 111112223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHH
Q 006437 466 TAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSY-----TVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYR 536 (645)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~ 536 (645)
..+...+...|+++.|.+.++++..... ......+ ...+..+...|+.+.|..++........... ...+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 3344455566666666666655533210 0000001 0111233345666666666555432111111 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 537 VMLLSFCKERNIKMVKRLLQDVIDA----RIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 537 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.+..++...|++++|...++++.+. +..+ ...+...+..++.+.|+.++|.+.+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666666666665432 2111 1234455555666666666666666666544
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5e-06 Score=80.39 Aligned_cols=427 Identities=13% Similarity=0.096 Sum_probs=220.7
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437 57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG 136 (645)
Q Consensus 57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (645)
....++++.|+..|..+..-.+ +|-..|.--..+++. .|+++.|..=-.+-++.. +..+..|.....++.-.|+++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~-~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYAS-LGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHH-HhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 4466889999999988777655 588888888888998 688888877666666654 446678999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHH-----HHHHhcCCcchHHHHHHHH
Q 006437 137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIAL-----CNLCKLNDVSNVKDVIGMM 211 (645)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~m 211 (645)
+|+..|.+-.+.. +.+...++.|..++.... .+.+.|. .| ..|..+. +.+... .+....-+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---~p--~~~~~l~~~p~t~~~~~~----~~~~~~l~~ 154 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---KP--YFHEKLANLPLTNYSLSD----PAYVKILEI 154 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---Cc--HHHHHhhcChhhhhhhcc----HHHHHHHHH
Confidence 9999999988764 556677777777771111 1111111 11 1111111 111111 111111111
Q ss_pred HHCCCCCCH-hh---HHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 212 VRKGFYPNV-RM---FEILLNCFCKMGRIAEAYQLLGLMITLG-------TSLSVNAWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 212 ~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
.+.+ |+. .. ...++.+.......+.- .+...+ ..|. .+..+ ......+
T Consensus 155 ~~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~-----------~~~~~---~~~~~~d 213 (539)
T KOG0548|consen 155 IQKN--PTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC-----------KQEHN---GFPIIED 213 (539)
T ss_pred hhcC--cHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc-----------cccCC---CCCccch
Confidence 1111 110 00 01111111111111000 000001 1111 00000 0000000
Q ss_pred HHH-cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437 281 MVQ-NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPD 359 (645)
Q Consensus 281 m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (645)
+.+ .....-..-...+..+..+..+++.|.+-+....+.. -++.-++....+|...|....+...-+...+.|.. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 000 0000112224455666667777777877777776654 35555566667777777777777766665554421 1
Q ss_pred HhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437 360 SYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG 439 (645)
Q Consensus 360 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 439 (645)
..-|+.+..++.+ +-.+|.+.++++.++..|.+.......|+.. .+
T Consensus 291 rad~klIak~~~r-------------------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~ 336 (539)
T KOG0548|consen 291 RADYKLIAKALAR-------------------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SK 336 (539)
T ss_pred HHHHHHHHHHHHH-------------------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HH
Confidence 1122222222211 2234555667777777776655443333221 12
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL 519 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 519 (645)
....+++....+...-.++.. ..-...=.+.+.+.|++..|...|.+++... |-|...|..-..+|.+.|.+..|+.-
T Consensus 337 lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 337 LKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 223333333333333223222 1111122555666777777777777777665 45677777777777777777777777
Q ss_pred HHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 520 YSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 520 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
.+...+. .|+ ...|.-=..++....++++|.+.|++.++.+
T Consensus 415 a~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 415 AKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666663 343 3344444444555566777777777666654
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=5.8e-05 Score=73.16 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 443 IDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYS 521 (645)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 521 (645)
.+....+++++......--..+|-.+++...+..-+..|..+|.++.+.+..+ ++...++++.-||. ++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566666666655333344567777887788888888999999888887666 67777888876665 57788888888
Q ss_pred HHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 522 QMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 522 ~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
--.. ..+| +.--...++-+...++-..++.+|++....++.+| ...|..+++.-..-|+...+.++-+++..
T Consensus 426 LGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7554 2344 33444566777888888888889998887755554 57888888888888888888888777653
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=6.2e-05 Score=75.44 Aligned_cols=192 Identities=19% Similarity=0.180 Sum_probs=111.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 296 LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR 375 (645)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 375 (645)
.+.+....+++.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|.+. ..++-.+.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34555666777777777777766532 2334566677777788888887777543 234456677778888
Q ss_pred cccHHHHHh-cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006437 376 FSLLPKLVC-GLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV 454 (645)
Q Consensus 376 ~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 454 (645)
|+.|.++-. .++.......|-+-..-+-++|++.+|.++|-.+. .|+ ..|+.|-+.|..+...++.++-
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh-
Confidence 877777763 34444455566666666667777777776664322 233 2355666666666666555432
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006437 455 MNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL 519 (645)
Q Consensus 455 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 519 (645)
.+..-..+...+..-|...|++..|.+-|-+.-+ |.+-++.|...+-+++|.++
T Consensus 877 --h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 877 --HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred --ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 1222233444455556666666666665544321 34444445555555555444
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=2.3e-05 Score=78.33 Aligned_cols=58 Identities=5% Similarity=0.085 Sum_probs=32.3
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 006437 50 PHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELA 111 (645)
Q Consensus 50 ~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 111 (645)
.....+++.+.+.+.+|.+....-.. ...|......+..++.+ ..-++.|-++|+.+.
T Consensus 618 ~laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik-~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 618 GLAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIK-GELYDKAGDLFEKIH 675 (1636)
T ss_pred cHHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHh-hHHHHhhhhHHHHhh
Confidence 34445666677777666655422111 12355666666666666 455666666666653
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=3.9e-08 Score=92.23 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=70.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCC
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGR 512 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 512 (645)
+...|++++|.++++.. .+.......+.+|.+.++++.|.+.++.|.+.. .| .+...+..++.. .++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33455555555554321 134444445555556666666666666555432 12 222223332221 124
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 006437 513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSS-SSAVNQLV 591 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 591 (645)
+.+|..+|+++.+. ..+++.+++.+..++...|++++|.+++++..+.+.. ++.+...++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55666666665442 3445555556666666666666666666655544433 445555555555555555 33445555
Q ss_pred HHH
Q 006437 592 EMC 594 (645)
Q Consensus 592 ~m~ 594 (645)
+++
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 555
No 92
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00014 Score=74.94 Aligned_cols=513 Identities=12% Similarity=0.111 Sum_probs=284.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437 60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL 139 (645)
Q Consensus 60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (645)
.++..+|+.-.+...++.|-.+.+.++.++ .+.+ .|+.++|..+++.....+. .|..|...+-.+|...+..++|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r-~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFR-LGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHH-hcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 346778999998888875533333333333 3446 6899999999998877764 38888999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHh----HHHHHHhhcCCCChhhHHHHHHHHHhc-CCc---------chHH
Q 006437 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVD----LGIKVLKETQLPNFLSFNIALCNLCKL-NDV---------SNVK 205 (645)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~ll~~~~~~-g~~---------~~a~ 205 (645)
.+|++..+. -|+......+..+|.+.+.+. .|+++++..+..--.-|+. ++.+.+. ... .-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 999999865 567888888888999887764 4677777655433333443 3332221 111 2345
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 206 DVIGMMVRKG-FYPNVRMFEILLNCFCKMGRIAEAYQLLG-LMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 206 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
+.++.+.+.+ ---+..-...-...+...|.+++|..++. ...+.-..-+...-+--++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666665543 11122223333445567788999999984 333433444555666778889999999999999999988
Q ss_pred cCCCCChhchHHHHHHHHh----------------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCCHHHH
Q 006437 284 NGCSPNVVTYTSLIKGFME----------------AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS---KMGSYDDA 344 (645)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a 344 (645)
.| +|. |...+..+.+ .+..+...+..++..... ....|-+-+.+.. .-|+.+++
T Consensus 255 k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred hC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHH
Confidence 75 343 4443332211 112222222222222211 1122333333333 34666665
Q ss_pred HHHHHHHHHCCCCC----C---------HhhHHHHHHHHHhcCC-cccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---
Q 006437 345 LDVYDGLLELKLVP----D---------SYTFCSLLSTVCLSGR-FSLLPKLVCGLEVEADLVVYNALLSYFCKAGF--- 407 (645)
Q Consensus 345 ~~~~~~~~~~~~~~----~---------~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 407 (645)
...|-+ +-|-.| | ..-...++..+....+ .....+.+.. +...+..-.-.|.
T Consensus 328 ~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~---------h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 328 LSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ---------HLCVLLLLRLLGLYEK 396 (932)
T ss_pred HHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH---------HHHHHHHHHHhhcccc
Confidence 544422 112111 1 1111223333322211 1111111110 1111111111221
Q ss_pred --hHHHHHHHHHHH---HC------CCCCCHh---------hHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCcHHH
Q 006437 408 --PNQAVKLYNTML---DK------GFTPDNY---------SFVGLLRGLCGARKID---EAINVYQGIVMNNPAVNAHV 464 (645)
Q Consensus 408 --~~~a~~~~~~m~---~~------~~~p~~~---------~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 464 (645)
.+....++.+.. ++ +.-|+.. +.+.|+..|.+.++.. +|+-+++......+. |..+
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~ 475 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQT 475 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHH
Confidence 122233332221 12 2334433 3456677787777765 455555555554433 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
--.+++.|+-.|-+..|.++|+.+--+.+.-|...|-. ..-+...|++..+...+......=-..-..+-..+..|| +
T Consensus 476 KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r 553 (932)
T KOG2053|consen 476 KLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-R 553 (932)
T ss_pred HHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-H
Confidence 66788999999999999999998876665555444432 234455677777777776655320011122333334444 5
Q ss_pred cCCHHHHHHHHH---HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 545 ERNIKMVKRLLQ---DVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 545 ~g~~~~a~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.|.+++..++.. ++....-..-..+-+..++.+...++.++-...++.|. .+|...
T Consensus 554 ~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~ 612 (932)
T KOG2053|consen 554 RGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSED 612 (932)
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchh
Confidence 566666655543 22221111124445666677778888888888888876 555433
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.1e-05 Score=75.65 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437 512 RTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTS 570 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 570 (645)
+..+.+.-.+.|.+...-|+ ...|..++..+...++++.|-+.+++|....+..|..+|
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 33344444444444332232 345667777777777777777777777765554444443
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=7.4e-07 Score=85.14 Aligned_cols=201 Identities=11% Similarity=-0.026 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL 472 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (645)
..|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...|+..++..+. +...+..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445666667788888888888888887753 335677888888888888999988888888887766 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
...|++++|.+.|++..+.. |+..........+...++.++|...+.+.... ..|+...+ .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-
Confidence 88889999998888888764 43221122222234567788888888765532 23332221 2223335555444
Q ss_pred HHHHHHHH---CCCC--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 553 RLLQDVID---ARIE--L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 553 ~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+.++.+.+ ..++ | ....|..++..+.+.|++++|...|++..+.+ .|+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~ 271 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFV 271 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHH
Confidence 34444442 1111 1 24578888888889999999999998888543 23444
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=1.2e-06 Score=83.60 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437 62 SDLIALSFFIWCAKQRDYFHD--VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL 139 (645)
Q Consensus 62 ~~~~A~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (645)
..+.++.-+..+....+..|+ +..|..+..++.. .|+++.|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 334455555444432221111 2334444444444 455555555555554443 233444555555555555555555
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 179 (645)
..|+...+.. +.+..++..+..++...|++++|.+.|++
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554432 22334444444444444555555544444
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=8.4e-06 Score=81.09 Aligned_cols=190 Identities=9% Similarity=-0.057 Sum_probs=92.7
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcC
Q 006437 57 LLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL---FLRIYWRGE 133 (645)
Q Consensus 57 l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~ 133 (645)
+...++++.|.+.+.......+-..+......+-.......|+++.|.+.+++..... +.+...+.. ........+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~ 94 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSG 94 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhccccc
Confidence 3344555555555544433322222322222222222222577777777777766553 223333321 111111233
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437 134 MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
....+.+.++... ...+........+...+...|++++|.+.+++.. +.+...+..+..++...|++++|...+++
T Consensus 95 ~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 95 MRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred CchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444311 1112223344445556666777777777776654 33445556666666677777777777766
Q ss_pred HHHCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 211 MVRKGF-YPNV--RMFEILLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 211 m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
..+... .|+. ..|..+...+...|+.++|..+++....
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 655321 1221 2344566666677777777777776643
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=3.4e-05 Score=80.04 Aligned_cols=472 Identities=11% Similarity=0.006 Sum_probs=260.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHh
Q 006437 99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLK 178 (645)
Q Consensus 99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 178 (645)
+...+...|-+..+.. +.=...|..|...|+...+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3444544444444432 1234467777777777778888888888887665 4567778888888888888888888743
Q ss_pred hcCCCCh-----hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 006437 179 ETQLPNF-----LSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL 253 (645)
Q Consensus 179 ~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (645)
...+.+. ..|....-.|.+.++...++.-|+...+.. +-|...|..+..+|...|++..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 3322111 123333344667788888888888887764 2267788888889999999999999888777643 3
Q ss_pred CHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHcC------CCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 006437 254 SVNAWTV--LIDGFRRLRRLDMAGYLWEKMVQNG------CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE------ 319 (645)
Q Consensus 254 ~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 319 (645)
+. .|.. ..-.-+..|.+.+|...+..+.... ..--..++..+...+.-.|-..+|.++++.-.+.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 22 2222 2223456788888888887776421 0111223333333344444444455554443321
Q ss_pred -CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc---c---cHHHHH-hcCCCCCC
Q 006437 320 -GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF---S---LLPKLV-CGLEVEAD 391 (645)
Q Consensus 320 -~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~-~~~~~~~~ 391 (645)
....+...|..+ ..|..+|-... .. .|+......+..-.-..+.. + .+.+.+ .......+
T Consensus 707 h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~ 774 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH 774 (1238)
T ss_pred HhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc
Confidence 101111111111 12222222222 11 12222222222211122221 1 011111 11111222
Q ss_pred HHHHHHHHHHHHH----cC----ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 006437 392 LVVYNALLSYFCK----AG----FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH 463 (645)
Q Consensus 392 ~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (645)
..+|..+...|.+ .| +...|+..+...++.. ..+..+++.|. .....|++.-+...|-+-....+. ...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~-~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPT-CHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcccc-chh
Confidence 3344434333322 11 2236777777766542 23455555554 446667888777777766665554 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--h--hCCCCCCHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM--K--HIAVPPNAYTYRVML 539 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m--~--~~~~~p~~~~~~~ll 539 (645)
+|..+.-.+.+..+++-|...|....... |.|...|--........|+.-++..+|..- . ..|-.|+..-|....
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 77777778888899999999999887664 456777777666667778888888887762 1 223344444444444
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 540 LSFCKERNIKMVKRLLQDV----------IDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
.-....|+.++-+...+++ ....+. +...|...+..+.+.+.+++|.++..+.
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~-~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQ-LCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc-hhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445556655544333332 222222 4566666666666777777666665554
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=4.7e-05 Score=75.74 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 006437 503 AIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
...++...|+.++|..+++.+.
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH
Confidence 3444455556666666665554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.2e-05 Score=71.64 Aligned_cols=193 Identities=14% Similarity=0.170 Sum_probs=114.7
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH-HHHHHH
Q 006437 86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN-IVMDVL 164 (645)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~ 164 (645)
+.+.+.-+.+ ..++.+|++++..-.+.. +.+......+..+|....++..|-..|+++-.. .|...-|. .-...+
T Consensus 13 ftaviy~lI~-d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIR-DARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHH-HhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 5555666666 577778887777665553 236666777777777778888888888877654 34433332 233445
Q ss_pred HhcCCHhHHHHHHhhcCC-CChhhHHHHHH--HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437 165 FKIGRVDLGIKVLKETQL-PNFLSFNIALC--NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ 241 (645)
Q Consensus 165 ~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 241 (645)
-+.+.+.+|+.+...+.. ++...-..-+. ..-..+++..+..++++....| +..+.+...-...+.|+.+.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 567777777777777664 22222222222 2234567777777776654332 33333344444456677777777
Q ss_pred HHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437 242 LLGLMITL-GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS 287 (645)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 287 (645)
-|+...+- |.. ....||..+. +.+.++++.|++...++.++|++
T Consensus 166 kFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 77776654 333 3445655443 33556777777777777777654
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=5.8e-07 Score=84.45 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI-KMVKRL 554 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~ 554 (645)
+.+.+|..+|+++.+. +++++.+.|.+..++...|++++|.+++.+..+.+ +-++.++..++......|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3456666666665433 34566666666666666666666666666655422 22455555666655555655 455556
Q ss_pred HHHHHHC
Q 006437 555 LQDVIDA 561 (645)
Q Consensus 555 ~~~~~~~ 561 (645)
+.++.+.
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6665543
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=0.00015 Score=66.33 Aligned_cols=319 Identities=11% Similarity=0.054 Sum_probs=154.5
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHH---HHHHhcCCcchHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcC
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIAL---CNLCKLNDVSNVKDVIGMMVRKGFYPNVRM-FEILLNCFCKMG 234 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~ 234 (645)
-+...+...|++.+|+.-|......|+..|.++. ..|...|+...|+.-+...++. +||-.. -..-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3445555566666666666666555555554443 3466667777777666666654 455332 222234556777
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437 235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD 314 (645)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (645)
.++.|..-|+.+.+.....+ + ...++.+.--.++-.. ....+..+...|+...|+....
T Consensus 121 ele~A~~DF~~vl~~~~s~~--~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG--L---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc--h---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHH
Confidence 77777777777776532211 0 0011111111111111 1122333444555555555555
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH-hcCCCCCCHH
Q 006437 315 MLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV-CGLEVEADLV 393 (645)
Q Consensus 315 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~ 393 (645)
.+.+.. +-|...|..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.+...+ +.+...||..
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 555542 2355555555556666666666655555444321 112223333333334444443333333 1222333322
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH---HHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH---TAIVD 470 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~ 470 (645)
.+-.. -....+..+.++.|.+ ....+++.++.+-.+...+..+......+ ..+-.
T Consensus 258 ~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 258 LCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 11110 1111222222222221 22344555555555555555544222222 23445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
++...+++.+|++...+.++.. +.|+.++---..+|.-...++.|+.-|+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5556667777777777776653 33466666666677766777777777777766
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=7.1e-05 Score=77.82 Aligned_cols=182 Identities=10% Similarity=0.009 Sum_probs=129.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006437 60 CPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVL 139 (645)
Q Consensus 60 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (645)
..+...|+..|-...+... .=...|..|-..|.. ..+...|...|....+.. ..+..........|++..+++.|.
T Consensus 471 rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDV--SLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence 3466788888877666544 246678888888888 457888999998887765 346677888889999999999999
Q ss_pred HHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 006437 140 EAFDEMGRFG-FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKG 215 (645)
Q Consensus 140 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 215 (645)
.+.-..-+.. ...-..-|....-.|.+.++...|..-|+... +.|...|..+..+|...|++..|.++|.+....
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 8833322211 01112233334445677888999999998765 556678889999999999999999999888765
Q ss_pred CCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006437 216 FYPNVRMFEI--LLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 216 ~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
.|+. +|.. ..-.-+..|.+.++...+..+..
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2322 23345677899999998888764
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=4.5e-06 Score=83.57 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (645)
|...|.+|+..|+..+|..+..+..++ +||..-|..+.+.....--+++|.++.+.... ..-..+.....+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH-------HHHHhhcccccc
Confidence 444444444444444444444444442 34444444444443333334444444333211 111111222222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
.++++++.+.|+...+.+ +....+|-.+..+..+.++++.|.+.|..... ..| +...|+.+-.+|.+.|+-.+|..
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 344444444444444332 22344444444444444444444444444444 333 23344444444444444444444
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 554 LLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
.+++..+.+.+ +...|...+-...+-|.+++|++.+.++
T Consensus 575 ~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 575 KLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 44444444422 3334444444444444444444444443
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.7e-05 Score=70.68 Aligned_cols=194 Identities=17% Similarity=0.210 Sum_probs=108.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH-HH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL-IK 298 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~ 298 (645)
..-+..++..+.+..+++.|++++....+.. +.+......|..+|....++..|-+.++++... .|...-|... ..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3346667777777788888888877766653 226667777777888888888888888887764 3554444322 34
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437 299 GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC--LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF 376 (645)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 376 (645)
.+.+.+.+..|+.+...|.+. ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 556677778888877777653 222211111222 223456666666666554322 222332222233455666
Q ss_pred ccHHHHHhc---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437 377 SLLPKLVCG---LEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF 423 (645)
Q Consensus 377 ~~a~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 423 (645)
+.|.+-|+. .+--.....||.-+. +.+.|+++.|++...+++++|+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 666665522 111122344444333 3345556666666666666554
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=2.2e-06 Score=83.54 Aligned_cols=248 Identities=16% Similarity=0.166 Sum_probs=170.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccH
Q 006437 300 FMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLL 379 (645)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 379 (645)
+.+.|++.+|.-.|+....+... +...|..|.......++-..|+..+.+..+. .|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--------------------
Confidence 45566677777777666665322 4556666666666666666666666666552 221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHcCCCHHHHHH
Q 006437 380 PKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL-----------RGLCGARKIDEAIN 448 (645)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~ 448 (645)
+....-.|.-.|...|.-.+|+..++.-+....+ |..+. ..+.....+....+
T Consensus 352 -----------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 352 -----------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred -----------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHH
Confidence 3445556666677777777777777766543210 00000 11222233445555
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437 449 VYQGIVMN-NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 449 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 527 (645)
+|-++... +..+|..+...|.-.|.-.|++++|..-|+.++..+ |-|..+||-|...++...+.++|+..|.+.++
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-- 492 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ-- 492 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--
Confidence 66665555 435788889999999999999999999999999875 55789999999999999999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 528 VPPNA-YTYRVMLLSFCKERNIKMVKRLLQDVIDARI---------ELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 528 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
++|+. .+...|.-+|...|.+++|.+.|-.++...- .++...|..|=.++.-.++.|-+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 78974 4677788899999999999999887764211 12345777776667777777655443
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=0.00013 Score=82.60 Aligned_cols=329 Identities=12% Similarity=-0.030 Sum_probs=137.3
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CcC--HHhHHHHHHHHHhc
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGT------SLS--VNAWTVLIDGFRRL 268 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~ 268 (645)
..|+.+.+.++++.+.......+..........+...|+++++...+......-. .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455555555554432111111122222333444556677777666665543210 011 11112223344566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCh----hchHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcC
Q 006437 269 RRLDMAGYLWEKMVQNGCSPNV----VTYTSLIKGFMEAKMFSIAFSFLDMLESE----GH-APDLVFHNVLIDCLSKMG 339 (645)
Q Consensus 269 ~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~ 339 (645)
|++++|...+++....--..+. ...+.+...+...|++++|...+++.... |. .....++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 7777777776665542101111 12233444455667777776666665432 10 011123334445566667
Q ss_pred CHHHHHHHHHHHHH----CCCC--C-CHhhHHHHHHHHHhcCCcccHHHHHhcC-------CCCCCHHHHHHHHHHHHHc
Q 006437 340 SYDDALDVYDGLLE----LKLV--P-DSYTFCSLLSTVCLSGRFSLLPKLVCGL-------EVEADLVVYNALLSYFCKA 405 (645)
Q Consensus 340 ~~~~a~~~~~~~~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~li~~~~~~ 405 (645)
+++.|...+++..+ .+.. + ....+..+...+...|++++|...+... +.......+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 77777766665543 1111 0 1122223333444455555555444221 1000122233334444555
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHhhH-----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 006437 406 GFPNQAVKLYNTMLDKGFT-PDNYSF-----VGLLRGLCGARKIDEAINVYQGIVMNNPAVN---AHVHTAIVDRLIEAG 476 (645)
Q Consensus 406 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 476 (645)
|++++|...+.+....... .....+ ...+..+...|+.+.|..++........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 5555555555554321000 000000 0011222334555555555444332111100 001223444455555
Q ss_pred CHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 477 RCHKAIQLFRRAIVE----KYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+.++|...++++... +..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555554432 11111 22333444445555555555555555544
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.2e-05 Score=69.06 Aligned_cols=250 Identities=12% Similarity=0.147 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHH
Q 006437 338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYN 416 (645)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~ 416 (645)
.|++..++..-....... .+...-..+-++|...|.......-...-. .|.......+...+...++.+..+ ++.+
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 445555444433322211 233333334455555555444333332211 333334443434344444444433 3444
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437 417 TMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD 496 (645)
Q Consensus 417 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 496 (645)
.+.......+......-...|++.+++++|.+..+... +......=+..+.+..+++-|.+.+++|.+.. +
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 55554444443444444556889999999999877621 33344444566778889999999999998764 6
Q ss_pred hhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 006437 497 VVSYTVAIRGLLEG----GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIR 572 (645)
Q Consensus 497 ~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 572 (645)
-.+.+.|..++.+. +...+|.-+|++|.+. ..|+..+.+....++...|++++|..+++........ ++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 77788788777643 4788999999999864 5789999999999999999999999999999988776 7888888
Q ss_pred HHHHHHhcCChhHHH-HHHHHHHHCCCCCChh
Q 006437 573 LTKFIFKFHSSSSAV-NQLVEMCNLGLIPDEM 603 (645)
Q Consensus 573 l~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~ 603 (645)
++-+-...|+..++. +.+.+.+. ..|...
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence 888878888876655 57777774 345444
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=0.00013 Score=66.72 Aligned_cols=167 Identities=9% Similarity=0.093 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHH-
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTA- 467 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~- 467 (645)
|...|..-..+|...|.+..|+.=++...+..-. +..++..+-..+...|+.+.+....++..+.++..-. ..|..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 4445555556666667666666655555443221 2333444445555666666666666665554432110 01111
Q ss_pred --HH------HHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HH
Q 006437 468 --IV------DRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AY 533 (645)
Q Consensus 468 --l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 533 (645)
+. ......+++.++.+..+...+.. |. ...+..+-.++...+++.+|++...+.++ +.|+ ..
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~ 342 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHH
Confidence 11 11223445555555555555443 22 12233333444555666666666666655 4443 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
++.--..+|.-..+++.|+.-++.+.+.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 66666666666666666666666665544
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.1e-05 Score=71.18 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=126.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG 510 (645)
Q Consensus 431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (645)
..+-..+...|+-+....+........+. +.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556666777777777776665444433 66677778888888999999999999888765 77889999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 511 GRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
|++++|..-|.+..+ +.| ++..++.+.-.+.-.|+.+.|..++......+.. |..+-..|.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999888 556 5678888888888899999999999888776554 777888888888899999988887
Q ss_pred HHHHH
Q 006437 590 LVEMC 594 (645)
Q Consensus 590 ~~~m~ 594 (645)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 66543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=6.9e-06 Score=72.82 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF-CKERN--IKMV 551 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~--~~~a 551 (645)
++.+++...+++.++.+ +.|...|..+...|...|++++|...|++..+ +.| +...+..+..++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 33444444444444433 33455555555555555555555555555554 233 344444444432 34344 3555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.+++++..+.++. +...+..+...+.+.|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554443 445555555555555555555555555543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=4e-05 Score=82.35 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=154.9
Q ss_pred ChhchHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006437 289 NVVTYTSLIKGFMEAKMFSIAFSFLDMLESE-GHAP---DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFC 364 (645)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (645)
+...|...|....+.++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---------
Confidence 3455666666666666666666666666543 1111 11234445554445555566666666655421
Q ss_pred HHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006437 365 SLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKID 444 (645)
Q Consensus 365 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 444 (645)
.....|..|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+..+-+
T Consensus 1528 -------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1528 -------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred -------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHH
Confidence 12345677778888888888888888888875 2345667888888888888888
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 445 EAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
.|..++.+..+.-++. ......-.+..-.+.|+.+++..+|+..+... |--...|+.+++.-.++|+.+.+..+|++.
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888887765442 34445556677778888888888888887653 446778888888888888888888888888
Q ss_pred hhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 524 KHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 524 ~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
...++.|- ...|...+..=...|+-+.+..+-.++
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 88777763 344555555555556655554443333
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00015 Score=70.53 Aligned_cols=202 Identities=15% Similarity=0.092 Sum_probs=133.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH-------HH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVH-------TA 467 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~ 467 (645)
...+.++..+..+++.|++-+....+.. -+..-++....++...|.+......-+..++.|-. ...-+ ..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456667777788888888888877753 34444455556677777777776666666555432 11112 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHH
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY-------------------------TVAIRGLLEGGRTEEAYILYSQ 522 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~ 522 (645)
+..+|.+.++++.+...|.+.+.....|+...= ..-...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344677778888888888887765544443211 1113345677889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437 523 MKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 523 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
+.... +-|...|..-.-+|.+.|.+..|+.-.+..++.++. ....|..=+.++....++++|.+.|.+.++. .|+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 88754 336778888888888999999888887777776433 3444444455566667888888888887743 4555
Q ss_pred h
Q 006437 603 M 603 (645)
Q Consensus 603 ~ 603 (645)
.
T Consensus 460 ~ 460 (539)
T KOG0548|consen 460 A 460 (539)
T ss_pred H
Confidence 4
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.2e-08 Score=56.99 Aligned_cols=32 Identities=38% Similarity=0.669 Sum_probs=20.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 492 KYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00082 Score=65.53 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
-|..+|+.||+-+.. +..+++++.++++...- +.+...+..-|+.-.+..+++.+..+|.+....- .+...|...
T Consensus 18 ~di~sw~~lire~qt--~~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQT--QPIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHcc--CCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 389999999987776 48999999999998763 4567778888999999999999999999988653 456666666
Q ss_pred HHHHH
Q 006437 161 MDVLF 165 (645)
Q Consensus 161 l~~~~ 165 (645)
++---
T Consensus 93 l~YVR 97 (656)
T KOG1914|consen 93 LSYVR 97 (656)
T ss_pred HHHHH
Confidence 65443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=0.0001 Score=70.41 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=149.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHH
Q 006437 335 LSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG-FPNQAVK 413 (645)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 413 (645)
+...+..++|+.+.+++++. .|+ +..+|+..-..+...| ++++++.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~-------------------------------~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPG-------------------------------NYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--Cch-------------------------------hHHHHHHHHHHHHHcchhHHHHHH
Confidence 34455677788877777763 222 2233444444444555 5688888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 414 LYNTMLDKGFTPDNYSFVGLLRGLCGARK--IDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 491 (645)
.++++.+...+ +..+|+.-...+.+.|+ .+++..+++.+++..++ +..+|+...-++...|+++++++.++++++.
T Consensus 94 ~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 94 FAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888775422 33344433333444454 36678888888887776 7778888888888888888898888888887
Q ss_pred CCCCChhhHHHHHHHHHhc---CC----HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 006437 492 KYPLDVVSYTVAIRGLLEG---GR----TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE----RNIKMVKRLLQDVI 559 (645)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~ 559 (645)
+ +.|...|+.....+.+. |. .+++++...++.. ..| |...|+.+...+... +...+|.+...+..
T Consensus 172 d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 172 D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 6 44677777776666554 22 2456777767766 445 667787777777663 34566878887777
Q ss_pred HCCCCcCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHHHCCCCCChh--hhH
Q 006437 560 DARIELDYHTSIRLTKFIFKFH------------------SSSSAVNQLVEMCNLGLIPDEM--WRK 606 (645)
Q Consensus 560 ~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~g~~p~~~--w~~ 606 (645)
+.++. +......|++.|+... ..++|.++++.+. ...|=.. |.+
T Consensus 249 ~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~~ 312 (320)
T PLN02789 249 SKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYWAW 312 (320)
T ss_pred cccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHHHH
Confidence 65544 6777888888887532 2366888888883 3444333 554
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.4e-05 Score=74.10 Aligned_cols=184 Identities=11% Similarity=-0.007 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--H
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--H 463 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 463 (645)
.....+-.+...+.+.|++++|...|+++.... |+. ..+..+..++...|++++|...++.+.+..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345667777778888889999998888887752 321 35566777888888888888888888877664222 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 006437 464 VHTAIVDRLIEA--------GRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYT 534 (645)
Q Consensus 464 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 534 (645)
.+..+..++.+. |+.++|.+.++++.... |+ ...+..+..... .... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 344455555544 66778888888877653 33 222222211100 0000 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 535 YRVMLLSFCKERNIKMVKRLLQDVIDARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 535 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
...+...+.+.|++++|...++.+.+..+. | ....+..++.++.+.|++++|.+.++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 124556788899999999999998875432 2 467888999999999999999999888864
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.6e-07 Score=55.46 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhc
Q 006437 149 GFTPNTFARNIVMDVLFKIGRVDLGIKVLKET 180 (645)
Q Consensus 149 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 180 (645)
|+.||..+||.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777666665
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=0.00022 Score=71.97 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437 294 TSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLS 373 (645)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 373 (645)
..+...+...|-...|..+++++.. |..++.+|+..|+..+|..+..+..+ -+|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 3444455555556666665555432 33455555555655555555555444 234444444444443333
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437 374 GRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGI 453 (645)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 453 (645)
.-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+.|...
T Consensus 471 s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 3344444443221110 00111111223577778887777655542 224456666666667778888888888877
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 454 VMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
..-.+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 546 vtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 766655 67778888888888888888888888887766 44566677777777788888888888877754
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=4.3e-05 Score=70.82 Aligned_cols=183 Identities=11% Similarity=0.000 Sum_probs=124.6
Q ss_pred CCHhhHHHHHHHHHhcCCcccHHHHHhcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----
Q 006437 358 PDSYTFCSLLSTVCLSGRFSLLPKLVCGL-EVEAD----LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY---- 428 (645)
Q Consensus 358 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 428 (645)
.....+..+...+...|+++.|...++.. ...|+ ...+..+...+...|++++|+..++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34566777888899999999999998543 23333 2466778889999999999999999998853 3222
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006437 429 SFVGLLRGLCGA--------RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY 500 (645)
Q Consensus 429 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 500 (645)
++..+..++... |+.+.|.+.++.+....+. +...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 344444555543 7789999999999988766 3322222211110 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMKHIAV-PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
..+...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678888999999999999876320 12 3567888899999999999999988887654
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00018 Score=69.27 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437 389 EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAI 468 (645)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 468 (645)
.|+...+...+.+......-..+..++.+-.+. .-..--|..-+ .+...|.++.|+..+..++...++ |.......
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHH
Confidence 345555555555444333333333333222221 11222344444 344678899999999998888776 88888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN 547 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 547 (645)
.+.+.+.++..+|.+.+++++... |+ ...+-.+..+|.+.|++.+|+.+++...... +-|+..|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 999999999999999999998874 55 6677778889999999999999999887642 5588899999999999998
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
..++..-.. +.|...|++++|+..+....+..
T Consensus 424 ~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 RAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 887765543 45566788888888888877653
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=1.1e-05 Score=67.47 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER 546 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 546 (645)
....+...|++++|...|+.+.... +.+...|..+..++.+.|++++|+..|++..+ ..| +...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcC
Confidence 3444445555555555555554443 33444555555555555555555555555554 223 4444555555555555
Q ss_pred CHHHHHHHHHHHHHC
Q 006437 547 NIKMVKRLLQDVIDA 561 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~ 561 (645)
+.++|...++...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=5.3e-05 Score=67.21 Aligned_cols=150 Identities=12% Similarity=0.153 Sum_probs=115.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006437 399 LSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRC 478 (645)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 478 (645)
+..|...|+++.+..-.+.+.. |. ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3567888888876444332221 11 0122366778888888888888777 888899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 479 HKAIQLFRRAIVEKYPLDVVSYTVAIRGL-LEGGR--TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 554 (645)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+ ..| +..++..+...+...|++++|...
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998875 45788888888764 67676 5999999999998 445 678888889999999999999999
Q ss_pred HHHHHHCCCC
Q 006437 555 LQDVIDARIE 564 (645)
Q Consensus 555 ~~~~~~~~~~ 564 (645)
|+++.+....
T Consensus 167 ~~~aL~l~~~ 176 (198)
T PRK10370 167 WQKVLDLNSP 176 (198)
T ss_pred HHHHHhhCCC
Confidence 9999886543
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=1.2e-05 Score=67.41 Aligned_cols=112 Identities=5% Similarity=-0.002 Sum_probs=95.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
.++++.++.. |+ .+..+...+.+.|++++|...|+.... ..| +...+..+..++...|++++|...++++.+.
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556665542 43 366678888999999999999999988 455 7889999999999999999999999999997
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 562 RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 562 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
++. ++..+..+..++.+.|++++|.+.+++..+ ..|+..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence 765 889999999999999999999999999984 567655
No 124
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00041 Score=66.28 Aligned_cols=147 Identities=7% Similarity=0.091 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CC----HHHH
Q 006437 409 NQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA---GR----CHKA 481 (645)
Q Consensus 409 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a 481 (645)
++++.+++.+.+.. +-+...|....-++...|+++++.+.++++++.++. +...|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 44555555555542 123445555555555556666666666666665554 444444444333332 21 2456
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----------
Q 006437 482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEG----GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER----------- 546 (645)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------- 546 (645)
.....+++... |-|...|+.+...+... ++..+|.+.+.+....+ ..++..+..|++.|+...
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 66666666654 45778888888877763 34456777777766532 336777888888887532
Q ss_pred -------CHHHHHHHHHHHH
Q 006437 547 -------NIKMVKRLLQDVI 559 (645)
Q Consensus 547 -------~~~~a~~~~~~~~ 559 (645)
..++|.++++.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 2356777777663
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=0.00028 Score=76.14 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437 326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA 405 (645)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (645)
..|-.-|......++.++|.++.+++... +.+. ...--...|.++++.-...
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R---------------------------EeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFR---------------------------EEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc---------------------------hhHHHHHHHHHHHhHHHhh
Confidence 44555566666667777777777666542 1110 0011133566666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLF 485 (645)
Q Consensus 406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (645)
|.-+...++|++..+.- -....|..|...|.+.+.+++|.++++.|.++.- ....+|...+..+.+..+-+.|.+++
T Consensus 1511 G~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred CcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHH
Confidence 77778888888887741 1234577788888888999999999999888744 47778888888888888888888888
Q ss_pred HHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 486 RRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 486 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
+++++.= |- .+......+..-.+.|+.+++..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++
T Consensus 1588 ~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1588 KRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8887642 21 34445555666678888888888888887632 33567888888888888998999999998888777
Q ss_pred CcC--HHHHHHHHHHHHhcCChhHHHHH
Q 006437 564 ELD--YHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 564 ~~~--~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
.|- ...|...+..--+.|+-+.+..+
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 653 34566666655566665544433
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00038 Score=61.12 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR-GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL 472 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (645)
.|..++-+....|+.+-|...++.+.++- |.+.-...+-. -+-..|++++|.++++.+.+.++. |..++---+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence 35555666677888888999999888763 44332222222 234578899999999999888755 667776666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC---CH
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER---NI 548 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g---~~ 548 (645)
-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.- +.| ++..+..+...+...| +.
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 6777777888888877765 567999999999999999999999999999887 567 5556666666665554 56
Q ss_pred HHHHHHHHHHHHCCC
Q 006437 549 KMVKRLLQDVIDARI 563 (645)
Q Consensus 549 ~~a~~~~~~~~~~~~ 563 (645)
..+.+++.+..+...
T Consensus 208 ~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 208 ELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhCh
Confidence 778889988887554
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=9.3e-05 Score=72.56 Aligned_cols=258 Identities=15% Similarity=0.077 Sum_probs=181.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437 265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDA 344 (645)
Q Consensus 265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 344 (645)
+.+.|++.+|.-.|+...+.. +-+...|..|-.....+++-..|+..+++..+.... +....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 467888999999999888764 447788999988889999999999999998886332 566777788889999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHCCC
Q 006437 345 LDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTM-LDKGF 423 (645)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~ 423 (645)
...++..+....+- . .+..+ ...++.+.- +..++.. ......++|-++ .+.+.
T Consensus 373 l~~L~~Wi~~~p~y-~----~l~~a-~~~~~~~~~-------~s~~~~~-------------~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY-V----HLVSA-GENEDFENT-------KSFLDSS-------------HLAHIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHhCccc-h----hcccc-CccccccCC-------cCCCCHH-------------HHHHHHHHHHHHHHhCCC
Confidence 99998887643210 0 00000 000000000 0011111 123344444444 34554
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHH
Q 006437 424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTV 502 (645)
Q Consensus 424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 502 (645)
.+|......|.-.|--.|.+++|...|+.++...|. |..+||-|...++...+.++|...|+++++.. |+ +.+...
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyN 503 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYN 503 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehh
Confidence 567777777777788899999999999999998887 89999999999999999999999999999864 65 677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIA---------VPPNAYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
|.-+|...|.+++|.+.|-..+... ..++...|.+|=.+++-.++.+.+.+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 8889999999999999888765321 11234566666666666666654433
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00013 Score=77.13 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV 502 (645)
Q Consensus 423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 502 (645)
...+...+..|.....+.|..++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4445677777777777888888888888888777666 56666777778888888888888888887764 445666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL 573 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 573 (645)
+..++.+.|++++|+.+|+++... .| +..++..+..++...|+.++|...|++..+..- +....|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 777778888888888888888762 34 467788888888888888888888888776422 233444443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00028 Score=74.60 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAI 468 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 468 (645)
.++..+-.|.....+.|.+++|..+++...+. .|+. .....+...+.+.+++++|....++.....+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34677888889999999999999999999985 5664 45667788899999999999999999999887 88888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI 548 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 548 (645)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|....|+..+. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HH
Confidence 999999999999999999999844 445889999999999999999999999999875 2455566655542 23
Q ss_pred HHHHHHHHHHHH----CCCCcCHHHHHHHHHHHHhc
Q 006437 549 KMVKRLLQDVID----ARIELDYHTSIRLTKFIFKF 580 (645)
Q Consensus 549 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 580 (645)
..-...++.+.- .|...........+-.|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 333444444431 22222345566666666554
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00016 Score=63.91 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437 396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA 475 (645)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 475 (645)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+.....+. |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence 33445556667766666666654432 1223344455677777888888888888887776655 778888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
|+++.|..-|.+..+.. +.+...+|.|.-.|.-.|+.+.|..++......+ .-|+.+-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888877763 3456777888888888888888888888877643 236777777777888888888887775
Q ss_pred HH
Q 006437 556 QD 557 (645)
Q Consensus 556 ~~ 557 (645)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00031 Score=75.09 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=71.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
.+..+..+|.+.|+.+++..+++++++..+. ++.+.|.+...|... ++++|.+++.+++.. +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444455555555555555555555555433 455555555555555 555555555544432 22
Q ss_pred hcCCHHHHHHHHHHHhh------------------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437 509 EGGRTEEAYILYSQMKH------------------I-AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT 569 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~------------------~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 569 (645)
..+++..+.++|.++.. . |..--..++-.+-..|...++++++..+++.+.+...+ +...
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhh
Confidence 22233333333333322 2 22222344555556667778888999999988887666 6666
Q ss_pred HHHHHHHHH
Q 006437 570 SIRLTKFIF 578 (645)
Q Consensus 570 ~~~l~~~~~ 578 (645)
...++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 777777765
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00082 Score=59.08 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=145.3
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437 405 AGFPNQAVKLYNTMLD---KG-FTPDNYS-FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 405 ~g~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (645)
..++++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+....+. +..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 4668888888888775 34 4556543 455666777889999999999999887754 3333333344456789999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
+|.++++.+++.+ |-|..++--=+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 556777776666777788888999988887763 55699999999999999999999999999999
Q ss_pred HCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 006437 560 DARIELDYHTSIRLTKFIFKFH---SSSSAVNQLVEMCNL 596 (645)
Q Consensus 560 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 596 (645)
-..+. ++..+..+.+.+.-.| +.+-|.+.+.+..+.
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 86554 6777788888766555 455688899988854
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00064 Score=60.19 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=58.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----c
Q 006437 228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----A 303 (645)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 303 (645)
..|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+- -+..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555665555554311 2222222233444555555666666655542 233444444444332 2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 304 KMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (645)
+.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++.....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555666665543 3455555555555555666666666666655553
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=6.7e-05 Score=62.51 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
...+...+...|++++|.+.++.+...+ +.+...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444455555555555444432 2244444444445545555555555555444421 2233444444444455
Q ss_pred cCCHHHHHHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVID 560 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~ 560 (645)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=9.1e-05 Score=61.69 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
.....+...+...|++++|.+.++.+...++. +...+..+...+.+.|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 44555666777888999999999888887655 77788888888999999999999999887765 55677888888889
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPPNAYTYRVM 538 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 538 (645)
...|++++|...|++..+ ..|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 999999999999998888 55765554433
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00098 Score=71.36 Aligned_cols=150 Identities=8% Similarity=0.072 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437 327 FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG 406 (645)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (645)
.+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... +.++|.+++.. .+..|...+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------------AV~~~i~~k 183 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK------------AIYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH------------HHHHHHhhh
Confidence 34444555555555555555555555543 33344444444444444 44444444321 223366667
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 407 FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN-NPAVNAHVHTAIVDRLIEAGRCHKAIQLF 485 (645)
Q Consensus 407 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (645)
++.++.++|.++.... |+...+ -.++.+.+... +..--..++-.+...|....+++++..++
T Consensus 184 q~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 8888888888887752 332222 11222222222 22223444555666777777788888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH
Q 006437 486 RRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
+.+++.. +-|.....-++.+|.
T Consensus 247 K~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcC-CcchhhHHHHHHHHH
Confidence 8877764 335556666666665
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00045 Score=66.69 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=108.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER 546 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 546 (645)
..-.+...|++++|+..++.++... |.|+..+......+.+.++.++|.+.++++.. ..|+ ....-.+..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 3445667899999999999988763 56788888888999999999999999999998 6786 666778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 547 NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
++++|..+++......+. |+..|..|..+|...|+..+|.....++...
T Consensus 389 ~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 389 KPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 999999999999887766 9999999999999999999999887777644
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00021 Score=69.67 Aligned_cols=126 Identities=12% Similarity=0.120 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
-....+|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+.... .| +...+..-..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3344556677777888999999999988764 44 3445777787888888899998888763 34 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.|.+.++++.|.++.+++.+..+. +..+|..|+.+|.+.|+++.|+..++.|.
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788899999999999999886554 67789999999999999999999888876
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=1.1e-05 Score=48.63 Aligned_cols=33 Identities=36% Similarity=0.660 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN 531 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 531 (645)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777775
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00048 Score=67.21 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRL 472 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (645)
.....++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++++.+...+. +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344566777778899999999999999874 553 445777787888899999999999987665 677777788889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
.+.++++.|+++.+++.+.. |-+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999874 4457799999999999999999999888775
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00049 Score=57.86 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIK 549 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~ 549 (645)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+...+....|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666553 222 12223344556667777777777777776441221 223444566667777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 550 MVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 550 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
+|+..++...... ..+..+...+++|.+.|+.++|.+.|++.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777776543222 23556666777777777777777777654
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.6e-05 Score=47.46 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP 530 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 530 (645)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.7e-05 Score=47.74 Aligned_cols=33 Identities=30% Similarity=0.616 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006437 257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN 289 (645)
Q Consensus 257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 289 (645)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00067 Score=57.05 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEE 515 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 515 (645)
.++...+...++.+....+... ....-.+...+...|++++|...|+.+......|+ ....-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666544421 12223345566666777777777777666541111 1233345566666777777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
|+..++..... ......+......+.+.|++++|...|+..
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777554321 223445556667777777777777776653
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.3e-05 Score=46.71 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006437 568 HTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIP 600 (645)
Q Consensus 568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 600 (645)
.+|+.++++|.+.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.061 Score=56.43 Aligned_cols=445 Identities=11% Similarity=0.085 Sum_probs=246.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRI--YWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGI 174 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 174 (645)
.+++..|......+.+.. |+.. |..++.+ ..+.|..++|..+++.....+.. |..+...+-..|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 478899999888887763 4443 3444444 46889999999999988766644 8889999999999999999999
Q ss_pred HHHhhcCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------CHHHHHHH
Q 006437 175 KVLKETQL--PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG----------RIAEAYQL 242 (645)
Q Consensus 175 ~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~ 242 (645)
.+|++... |+..-...+..+|.+.+++.+-.+.--+|-+. ++-+...+=.+++...+.- -..-|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99999874 44444455566777777765544444444332 2334455555555554431 13346677
Q ss_pred HHHHHHcC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006437 243 LGLMITLG-TSLSVNAWTVLIDGFRRLRRLDMAGYLWEK-MVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEG 320 (645)
Q Consensus 243 ~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (645)
++.+.+.+ .--+..-...-....-..|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++..+|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77776553 222222222333445678889999999943 3333222334444456777888899999999999998886
Q ss_pred CCCCHhhHHHHHHHH----------------HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCcccHHH
Q 006437 321 HAPDLVFHNVLIDCL----------------SKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC---LSGRFSLLPK 381 (645)
Q Consensus 321 ~~~~~~~~~~ll~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~ 381 (645)
.. | |...+... ...+..+...+...+....+ ....|-+-+.++. .-|+.+++..
T Consensus 257 ~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 257 ND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred Cc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 43 2 22222211 11222333333333332221 1223333333333 3466665444
Q ss_pred HH-hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHHcCC-----CHHHHHH
Q 006437 382 LV-CGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-------SFVGLLRGLCGAR-----KIDEAIN 448 (645)
Q Consensus 382 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~-----~~~~a~~ 448 (645)
.+ +..+..|- |..=+..|...=..++-..++....... ++.. -+...+..-...| .-+....
T Consensus 330 ~y~~kfg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 330 YYFKKFGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHHhCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 33 55554442 2222222222223333334443333221 1111 0111111111112 1122222
Q ss_pred HHHHHH---HcC------CCCc---------HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 449 VYQGIV---MNN------PAVN---------AHVHTAIVDRLIEAGRCH---KAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 449 ~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
++.+.. ++| ..|+ .-+.+.+++.+.+.++.. +|+-+++...... +-|..+--.+|+.|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence 222211 112 1111 113456788888888765 4555555544432 33455556688899
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.-.|-+..|.++|+.+.-..+..|..-|. +.+.+...|.+..+...+....+
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999999987655665544332 34455667788887777776553
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00067 Score=66.49 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=79.7
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006437 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN--NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSY 500 (645)
Q Consensus 423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 500 (645)
.+.+...+..++..+....+++.+..++.+.... ....-..+..++++.|.+.|..+.+.++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445566666666666666677777776666554 22222333457777777777777777777776667777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE 545 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 545 (645)
|.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766555555666666555555444
No 148
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.72 E-value=0.051 Score=52.29 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK-YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY-RVM 538 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l 538 (645)
-..+|...++...+..-++.|..+|-++.+.+ +.+++..+++++.-++. |+...|..+|+--.. ..||...| .-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34556777887788888999999999999888 67889999999987765 678889999987554 35655544 345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHHhhh-cccCC
Q 006437 539 LLSFCKERNIKMVKRLLQDVIDARIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLGLLS-DETMT 616 (645)
Q Consensus 539 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~-~~~~~ 616 (645)
+.-+...++-+.|..+|+..+..--. --...|..+++.-..-|+...|..+-++|.. +-|... +..+.. ..-.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen--~~evF~Sry~ik 548 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN--LIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh--HHHHHHHHHhhh
Confidence 66668889999999999966542111 1267899999998999999999988888873 566665 333332 34444
Q ss_pred ccccccccccccccCCCcchhhccCCCC
Q 006437 617 PVSLFDGFVPCERRAGNANHLLLNGGVG 644 (645)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (645)
+..++..+-...........|-+.+|-|
T Consensus 549 ~da~~~~le~t~~~n~rE~sv~~~ggnG 576 (660)
T COG5107 549 ADAILPPLEPTYMYNEREHSVQMEGGNG 576 (660)
T ss_pred ccccCCCCCchhhhhhhhhheeecccCC
Confidence 4444444444444444444454666665
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0015 Score=52.85 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 006437 503 AIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
+..++.+.|++++|...++.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3333444444444444444433
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.0006 Score=66.82 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRK--GFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDG 264 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 264 (645)
....++..+....+.+.+..++-..... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3344444444444445555555444432 11122234445555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh
Q 006437 265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME 302 (645)
Q Consensus 265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (645)
+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555544444444444444444333
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00076 Score=51.76 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF 580 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (645)
.+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.++...+.... +...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 3444445555555555555555442 22 2344445555555555555555555555544332 334555555555555
Q ss_pred CChhHHHHHHHHHH
Q 006437 581 HSSSSAVNQLVEMC 594 (645)
Q Consensus 581 g~~~~A~~~~~~m~ 594 (645)
|++++|.+.+++..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666655555554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00081 Score=51.59 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556666777777777777776553 3344566667777777777777777777776632 2244566677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVID 560 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~ 560 (645)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776654
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.00089 Score=55.18 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER 546 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 546 (645)
+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|...... .| |+..+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHcC
Confidence 3334444455555555555444433 223444444444444455555555555554442 22 3444444444555555
Q ss_pred CHHHHHHHHHHHH
Q 006437 547 NIKMVKRLLQDVI 559 (645)
Q Consensus 547 ~~~~a~~~~~~~~ 559 (645)
+.+.|++-|+..+
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554444
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0013 Score=53.20 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHH
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSI 571 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 571 (645)
.++..++..+.+.|++++|.+.++++.+. .|+ ...+..+..++.+.|+++.|...++.+....+.. ....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34566777888999999999999999863 343 4567778999999999999999999998754332 356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 572 RLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 572 ~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
.+..++.+.|+.++|.+.++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 88899999999999999999998653
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00011 Score=55.01 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 510 GGRTEEAYILYSQMKHIAV-PPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|.+++++ .+.+.. +....-.++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 3566666666666665321 01333444466666666777777666666 222222 22333344666667777777776
Q ss_pred HHHH
Q 006437 589 QLVE 592 (645)
Q Consensus 589 ~~~~ 592 (645)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=8e-05 Score=43.19 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 527 (645)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.082 Score=53.76 Aligned_cols=376 Identities=14% Similarity=0.109 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH----------HhcCCHhHHHHHHhhcCCCCh
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL----------FKIGRVDLGIKVLKETQLPNF 185 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----------~~~g~~~~A~~~~~~~~~~~~ 185 (645)
.|.+..|..+.......-.++.|...|-+.... +.......|-... +--|++++|.++|-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 466666766666655555666666655544321 1111111111111 113566666666655554442
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH
Q 006437 186 LSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYP----NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL 261 (645)
Q Consensus 186 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (645)
.+..+.+.|++-.+.++++. -|-.. -...++.+...++....+++|.+.|..-.. -...
T Consensus 766 -----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 23444455555444444332 11111 123455555556655566666665543221 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 006437 262 IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY 341 (645)
Q Consensus 262 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 341 (645)
++++.+..++++.+.+-..+ +-+......+...+...|.-++|.+.+-+.-. | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 44444444444444433333 23444555566666666666666655433211 1 1234455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHH-HHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006437 342 DDALDVYDGLLELKLVPDSYTFCSLL-STVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD 420 (645)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 420 (645)
.+|.++-+... -|...|.-+-- .-+...++..+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~e-------------------aIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHME-------------------AIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHH-------------------HHHHhhhcccchhHHHHHHHHhH
Confidence 66665544322 12222211100 00111111111 23345667777777777777765
Q ss_pred C----CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437 421 K----GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD 496 (645)
Q Consensus 421 ~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 496 (645)
. +.+|-..--..++.++.- .+..++.+-.+....+|...+... +...|-.+++-++.+..-. | ..
T Consensus 952 ~e~~K~~p~lr~KklYVL~AlLv-E~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AE 1020 (1189)
T KOG2041|consen 952 REQEKYVPYLRLKKLYVLGALLV-ENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AE 1020 (1189)
T ss_pred HHhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HH
Confidence 3 333332222222222211 112222222222222332211110 1122223333333332221 1 13
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHI-AVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
...|-.|..--...|.++.|++..-.+.+- .+-|-...|..+.-+.+....+...-+.|-++.
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 344444445555678888888765555421 255667777777665555555544444444443
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00062 Score=61.62 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIK 549 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~ 549 (645)
-+.+.+++.+|+..|.++++.. |-|.+.|..-..+|.+.|.++.|++-.+.... +.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 3566777777887777777764 44666677777777777777777777777776 5564 457777777777778888
Q ss_pred HHHHHHHHHHHCCCCcCHHHH
Q 006437 550 MVKRLLQDVIDARIELDYHTS 570 (645)
Q Consensus 550 ~a~~~~~~~~~~~~~~~~~~~ 570 (645)
+|.+.|++.++. .|+-.+|
T Consensus 167 ~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHH
Confidence 777777777663 3443344
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00095 Score=50.82 Aligned_cols=75 Identities=23% Similarity=0.404 Sum_probs=39.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 297 IKGFMEAKMFSIAFSFLDMLESEGH-APDLVFHNVLIDCLSKMG--------SYDDALDVYDGLLELKLVPDSYTFCSLL 367 (645)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 367 (645)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|++|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544432 1234455566666666666666666655
Q ss_pred HHHH
Q 006437 368 STVC 371 (645)
Q Consensus 368 ~~~~ 371 (645)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0012 Score=50.27 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHhhCCCCCCHHhHH
Q 006437 88 HMISVVTRLTGRFETVRGIVGELARVGC-VIKAQTFLLFLRIYWRGE--------MYGMVLEAFDEMGRFGFTPNTFARN 158 (645)
Q Consensus 88 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (645)
..|.-+.. .+++...-.+|+.+++.|+ .|+..+|+.++.+.+++. .+-..+.+|++|+..+++|+..+|+
T Consensus 30 ~~I~~~~~-~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFE-NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHh-hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 34455555 5899999999999999999 899999999999987664 3557788999999999999999999
Q ss_pred HHHHHHHh
Q 006437 159 IVMDVLFK 166 (645)
Q Consensus 159 ~ll~~~~~ 166 (645)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0017 Score=63.72 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=57.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 516 (645)
+...|+++.|...|+++++..+. +...+..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34456666666666666665554 45555566666666666666666666666553 33455566666666666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHH
Q 006437 517 YILYSQMKHIAVPPNAYTYRVM 538 (645)
Q Consensus 517 ~~~~~~m~~~~~~p~~~~~~~l 538 (645)
+..|++..+ +.|+...+..+
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHH
Confidence 666666665 44543333333
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0023 Score=62.87 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN 547 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 547 (645)
...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+ +.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 455677899999999999999875 45688888999999999999999999999998 456 67788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437 548 IKMVKRLLQDVIDARIELDYHTSIRL 573 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~~~~~~~~~l 573 (645)
+++|...+++.++.++. +......+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999999986654 44444443
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.0026 Score=52.51 Aligned_cols=94 Identities=7% Similarity=-0.017 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF 578 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (645)
.-.+..-+...|++++|.++|+-+.. +.| +..-|..|.-+|-..|++++|+..+......++. |+..+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34444555677788888888777766 455 4555666666667777888888888777776654 7777777777788
Q ss_pred hcCChhHHHHHHHHHHHC
Q 006437 579 KFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 579 ~~g~~~~A~~~~~~m~~~ 596 (645)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888877777766544
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00011 Score=42.55 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437 257 AWTVLIDGFRRLRRLDMAGYLWEKMVQN 284 (645)
Q Consensus 257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 284 (645)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0023 Score=60.49 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE-AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554322 2233333333333222 33444455555555543 334455555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPPNA---YTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555442 22211 2444444444555555555555555444
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0067 Score=55.47 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHH
Q 006437 494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE---RNIKMVKRLLQDVIDARIELDYHTS 570 (645)
Q Consensus 494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 570 (645)
|-|...|-.|..+|...|+.+.|..-|.+..+.. .+|+..+..+..++... .+..++..+++++.+.+.. |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4467777777777777777777777777776621 23556666666555333 2455677777777766554 66667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 571 IRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 571 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777777777777777777777753
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0033 Score=54.45 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML 539 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 539 (645)
..+..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+ +.| ...++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 344555555666666666666666665442111 123566666666666667777666666665 233 233444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 006437 540 LSFC-------KERNIKMVKRLLQ 556 (645)
Q Consensus 540 ~~~~-------~~g~~~~a~~~~~ 556 (645)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 4555554444443
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0021 Score=60.76 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 393 VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRG-LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.-+. +...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 467778888888888999999999998643 2233334333333 33357778899999999887555 77888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDV---VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF 542 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 542 (645)
+.+.++.+.|..+|++.+.. ++++. ..|...+.--.+.|+.+.+..+.+++.+ ..|+...+..+.+-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 99999999999999999865 33332 4899999988999999999999999987 566655555555544
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0017 Score=58.87 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 516 (645)
+.+.+++++|...|.+.+...+. |...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 45678888888888888887766 77777778888999999999988888888764 23467889999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437 517 YILYSQMKHIAVPPNAYTYRVMLLSF 542 (645)
Q Consensus 517 ~~~~~~m~~~~~~p~~~~~~~ll~~~ 542 (645)
++.|++.++ +.|+..+|..=+...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999888 788777776555444
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0054 Score=53.35 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 344455555555666666666655554321111 23455555555555555555555555554 233 3334444444
Q ss_pred HHHhcCCHHH
Q 006437 541 SFCKERNIKM 550 (645)
Q Consensus 541 ~~~~~g~~~~ 550 (645)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 4544444333
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.014 Score=60.02 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
...|..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|.+.++++...+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444444444445555555555555555 33555555555555555555555555555555533
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.026 Score=53.58 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHc----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----Chh-chHHHHHHHHh
Q 006437 234 GRIAEAYQLLGLMITL----GTSL-SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSP-----NVV-TYTSLIKGFME 302 (645)
Q Consensus 234 ~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~ 302 (645)
|+++.|.+.|+...+. +... -..++..+...+.+.|++++|.++|+++...-... +.. .+...+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555554421 1000 12244455556666666666666666665432111 111 12222334445
Q ss_pred cCChhHHHHHHHHHHhC
Q 006437 303 AKMFSIAFSFLDMLESE 319 (645)
Q Consensus 303 ~~~~~~a~~~~~~~~~~ 319 (645)
.|+...|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 56666666666665543
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00042 Score=51.82 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ .+ ..| +......+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555443210 1222333345555555555555555554 21 122 12333333444555555555555
Q ss_pred HHHH
Q 006437 554 LLQD 557 (645)
Q Consensus 554 ~~~~ 557 (645)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0091 Score=51.93 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIK--AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
....+..+...+.. .|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 45556666677777 7999999999998876543222 3577788888889999999999999888753 335666677
Q ss_pred HHHHHHhcCCHhHHHH
Q 006437 160 VMDVLFKIGRVDLGIK 175 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~ 175 (645)
+..++...|+...+..
T Consensus 112 lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 112 IAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHcCChHhHhh
Confidence 7777777776544443
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.03 Score=46.98 Aligned_cols=125 Identities=11% Similarity=0.091 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHH
Q 006437 460 VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP---NAYTYR 536 (645)
Q Consensus 460 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~ 536 (645)
|+....-.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. | ++.+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 34444445666666666666666666666544344456666666666666666666666666665522 3 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.+.+.+...|.+..|..-|+...+.-+ ++..-......+.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHH
Confidence 555666666666666666666665433 33333334455666665555443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.11 Score=47.72 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 006437 89 MISVVTRLTGRFETVRGIVGELARVGCVIKAQT---FLLFLRIYWRGEMYGMVLEAFDEMGRFG 149 (645)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~ 149 (645)
....+.. .|+++.|.+.|+.+..... -+... ...+..++.+.+++++|...+++..+..
T Consensus 38 ~A~~~~~-~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQ-DGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333444 5778888888888776532 12222 2345567777788888888888777553
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.056 Score=51.51 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHH
Q 006437 265 FRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLD 314 (645)
Q Consensus 265 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (645)
+.+..++..|+..+....+.. +-+..-|..-...+...+++++|.--.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar 107 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDAR 107 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchh
Confidence 444555556666666555543 2233344444444555555555554433
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.28 Score=50.16 Aligned_cols=172 Identities=13% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-CCChhhHHHH----------HHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437 151 TPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-LPNFLSFNIA----------LCNLCKLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 151 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l----------l~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
.|.+..|..|.......-.++-|+..|-+.. -+....-..+ ...-+--|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 6788888888877777777777777665432 1111100000 111122466666666666654432
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS----VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS 295 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 295 (645)
..+..+.+.|++-.+.++++. -|-..| ...|+.+.+.++....+++|.+.|..-.. -..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 234445555666555444432 111111 23566666666666666666666654321 112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 006437 296 LIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVY 348 (645)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (645)
.+.++.+..++++-+.+-+.+.+ +....-.+..++.+.|.-++|.+.|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 34555555555554444443332 4444555666666667666666655
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.0064 Score=52.75 Aligned_cols=104 Identities=16% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 006437 218 PNVRMFEILLNCFCKM-----GRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT 292 (645)
Q Consensus 218 p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 292 (645)
-+-.+|..+++.+.+. |.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 3555666666666543 5566666666667777777777777777766543 2211 0011111100
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS 340 (645)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 340 (645)
-.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0012344566666777777777777777766666655543
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.02 Score=52.47 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=86.5
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 006437 450 YQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHI 526 (645)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 526 (645)
++.-...++. |..-|-.|...|...|+.+.|..-|.+..+.. ++|+..+..+..++.... ...++..+++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~- 221 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA- 221 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence 3444555666 88889999999999999999999999888764 567777777777766433 46678889999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 527 AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 527 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
..| |..+...|...+...|++.+|...|+.|.+....
T Consensus 222 -~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 222 -LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 445 6777888888889999999999999999886543
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.21 Score=47.88 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC
Q 006437 362 TFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR 441 (645)
Q Consensus 362 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 441 (645)
+.+.-+.-+...|+...|.++.....+ |+-..|-..+.+++..+++++..++-.. . -++.-|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 444445555666777777777666554 6777777778888888888776665432 1 13466777778887788
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFR 486 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (645)
+..+|..+...+ . +..-+..|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 877777776652 1 2445667777777777766543
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.011 Score=51.16 Aligned_cols=81 Identities=10% Similarity=-0.115 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 83 VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVI--KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
...|..+...+.. .|++++|...|++.......+ ...++..+...+...|++++|+..++...+.. +.....++.+
T Consensus 35 a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4455555555555 677888887777776553222 22466667777777778888877777777542 3334555555
Q ss_pred HHHHH
Q 006437 161 MDVLF 165 (645)
Q Consensus 161 l~~~~ 165 (645)
..++.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.21 E-value=0.031 Score=57.55 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhhC
Q 006437 460 VNAHVHTAIVDRLIE--A---GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG--------GRTEEAYILYSQMKHI 526 (645)
Q Consensus 460 ~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~ 526 (645)
.+...|...+.+... . +..+.|..+|+++++.. |-+...|..+..++... ++...+.+..++....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 344555555444322 1 22556666677666653 22244444443333221 1233444444444332
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437 527 A-VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 527 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
. ...++..+..+.-.....|++++|...++++.+.+ |+...|..++.++...|+.++|.+.+++... +.|..
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 1 23356778877777778899999999999999976 5788999999999999999999999999885 45543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0019 Score=45.39 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
..+.+.|++++|.+.|+++++.. |-+...+..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554443 22344444555555555555555555555444
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.4 Score=49.58 Aligned_cols=341 Identities=13% Similarity=0.085 Sum_probs=182.2
Q ss_pred HcCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHHHHhhcCC-
Q 006437 112 RVGCVIKAQTFLL-----FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIKVLKETQL- 182 (645)
Q Consensus 112 ~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~- 182 (645)
+.|++.+-.-|.. +|..+...+.+..|+++-..+...-..- ..+|.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666655543 4667777888899999888776321111 5667777777776533 2333334444444
Q ss_pred -CChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh
Q 006437 183 -PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFY----PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA 257 (645)
Q Consensus 183 -~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (645)
....+|..+.+--...|+.+-|..+++.=...+-+ .+..-+...+.-+...|+.+-...++-.+... .+...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence 45567888877777889988888887653322211 12233455566667777777777776666542 12222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHH-HHHHH----hCCCCCCHhhHHHHH
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSF-LDMLE----SEGHAPDLVFHNVLI 332 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~----~~~~~~~~~~~~~ll 332 (645)
|... ..+...|..+|.+..+.. |..+ +-..|-...+...+-.+ ++... ..|..|+. ....
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a 645 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAA 645 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHH
Confidence 2211 123344555555544321 1111 11111111222211111 11100 11222222 2223
Q ss_pred HHHHhcCCH---HH-------HHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHH
Q 006437 333 DCLSKMGSY---DD-------ALDVYDGLLE-LKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSY 401 (645)
Q Consensus 333 ~~~~~~~~~---~~-------a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 401 (645)
..+.+.... ++ -.++.+.+.. .|..-..-+.+--+.-+...|+...|.++-.+.. -||-..|-.-+.+
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTA 724 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHH
Confidence 333333321 11 1112222221 2223333444555555666677777777766544 4566667777778
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006437 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKA 481 (645)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 481 (645)
++..+++++-+++-+.+. .+.-|...+.+|.+.|+.++|.+++.+... .. -.+.+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHH
Confidence 888888877776655443 245577778888888888888888766532 11 356778888888887
Q ss_pred HHHHHH
Q 006437 482 IQLFRR 487 (645)
Q Consensus 482 ~~~~~~ 487 (645)
.++--+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 766443
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.13 E-value=0.29 Score=47.52 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=58.8
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 006437 55 STLLNCPSDLIALSFFIWCAKQRDYFHD----VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRI-- 128 (645)
Q Consensus 55 ~~l~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-- 128 (645)
.+|..+++..+|-++|..+-....-.|. -...+.++++|.. ++.+.....+....+.. | ...|..+..+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl--~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL--NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH--hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 5677889999999999887665432222 2234567777777 56888888777776653 2 2234444443
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 006437 129 YWRGEMYGMVLEAFDEMGRF 148 (645)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~ 148 (645)
+.+.+.+.+|.+.+..-...
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 35778889998888776543
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0013 Score=46.19 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
..+.+.|++++|++.|+++.+. .| +...+..+..++...|++++|...++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555442 23 334444444444555555555555554443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.0019 Score=45.95 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
.|++++|.++|+++.... |-+...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22344444444444444444444444444443
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.0097 Score=51.65 Aligned_cols=88 Identities=11% Similarity=0.320 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHH
Q 006437 82 DVQSFDHMISVVTRL----TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE----------------MYGMVLEA 141 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~~ 141 (645)
+-.+|..++..+.+. .|..+-....+..|.+.|+.-|..+|+.|+..+=+.. +-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 777788888777752 5778888899999999999999999999998775422 45678999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 142 FDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
+++|...|+-||..++..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999966553
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.072 Score=50.63 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=45.1
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hHH
Q 006437 434 LRGLCGA-RKIDEAINVYQGIVMNNP---AV--NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VV-SYT 501 (645)
Q Consensus 434 l~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~ 501 (645)
...|... |+++.|.+.|++...... .+ -...+..+...+.+.|++++|.++|+++.......+ +. .|-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3345555 677777777776554310 11 122334456666667777777777766655422111 11 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
..+-++...|+...|...+++...
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223344455666666666666654
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0024 Score=45.51 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER-NIKMVKRLLQDVI 559 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~ 559 (645)
.|..+...+...|++++|+..|++..+ +.| +...|..+..++...| ++++|.+.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444 223 2334444444444444 3444444444443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0027 Score=45.21 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG-RTEEAYILYSQMKH 525 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 525 (645)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45567777777888888888888888887765 445777788888888888 68888888887765
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.01 E-value=0.38 Score=46.75 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH-------HHHHHHHc----CCCHHHHHHHHHHHHHcCCCC
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV-------GLLRGLCG----ARKIDEAINVYQGIVMNNPAV 460 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 460 (645)
..++..++....+.++...|.+.+.-+.-. .|+...-. .+.+..+. .-+...-..+|+......++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 346777888888888888888888776653 33332111 11222221 123344455565555544442
Q ss_pred cHHHH--HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHhc---CCHHHHHHHHHHHhhCCCCC
Q 006437 461 NAHVH--TAIVDRLIEAGR-CHKAIQLFRRAIVEKYPLDVVSYTVAI----RGLLEG---GRTEEAYILYSQMKHIAVPP 530 (645)
Q Consensus 461 ~~~~~--~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~m~~~~~~p 530 (645)
..-+. ---..-+.+.|. -++|+.+++.+.+-. +-|..+-|.+. .+|.+. ....+-+.+-+-+.+.|++|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 21111 112334555565 788999999887642 22444333332 223222 22333344444455778877
Q ss_pred ----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 531 ----NAYTYRVMLLSF--CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 531 ----~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+...-+.|.+|= ...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|...+.++.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 344555565543 578999988766555544 67899999999999999999999999998874
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.037 Score=49.26 Aligned_cols=163 Identities=9% Similarity=-0.036 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHhhcCCCC----------hhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH
Q 006437 156 ARNIVMDVLFKIGRVDLGIKVLKETQLPN----------FLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEI 225 (645)
Q Consensus 156 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 225 (645)
-++.|.+.+.-..-+++.+..++.-..|. ...-+.++..+...|.+.-..+++.+.++...+.++.....
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 35666666665555555555555433211 12334555555666667667777777766655556666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHH
Q 006437 226 LLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVL-----IDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300 (645)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (645)
+.+.-.+.|+.+.|...|+...+..-..|..+++.+ ...|.-.+++..|...++++...+ +.|...-|.=.-+.
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCL 296 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHH
Confidence 677777777777777777766554333333333332 233445566666666666665432 12333333333333
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 006437 301 MEAKMFSIAFSFLDMLESE 319 (645)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~ 319 (645)
.-.|+...|++.++.|...
T Consensus 297 lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4456666666666666654
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.063 Score=54.02 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----------
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY---------- 533 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------- 533 (645)
+...+...+.+...+.-|-++|.+|-+. ..++......+++.+|..+.++..+ +.||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3333444444455566666666655322 2344555666677777776666554 344422
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 534 -TYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 534 -~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
-|.-.-.+|.++|+.++|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 133334577788888888888888764
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.18 Score=42.57 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=103.4
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHH
Q 006437 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYT 501 (645)
Q Consensus 423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 501 (645)
..|+...-..|..++...|+..+|...|++...--..-|..+.-.+.++....+++..|...++++.+.+. ..++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45777777788888999999999999999887766666888888888999999999999999998877640 01344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
.+.+.|...|+..+|+.-|+...+ ..|+...-......+.++|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 677888999999999999999988 66776665555566677887776665444443
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.037 Score=44.06 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---H-HHHHHHHHH
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---A-YTYRVMLLS 541 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~-~~~~~ll~~ 541 (645)
...++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++.... .|+ . .....+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34445556666666666666666553332 234444555566666666666666665542 232 1 112222334
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006437 542 FCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 542 ~~~~g~~~~a~~~~~~~~ 559 (645)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 455566666666554443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.051 Score=45.73 Aligned_cols=69 Identities=29% Similarity=0.557 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK-----HIAVPPNAYT 534 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 534 (645)
...++..+...|++++|..+.+.+.... |.|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555556666666666666666554 4455566666666666666666666666543 3355555444
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0035 Score=44.47 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=37.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
..|++++|.++|+.+....+. +..+...+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456777777777777776666 66666677777777777777777777776653
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.05 Score=48.45 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----
Q 006437 430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI----- 504 (645)
Q Consensus 430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----- 504 (645)
...++..+...+.+.-...++++.++..++.++...+.+++.-.+.|+.+.|...|++..+..-..|...++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555556666777777777777777666677777777777777777777777777665443233333333332
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
..|.-.+++.+|...+.++...+ ..|+...+.-.-.....|+...|.+.++.|.+..+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23445567777777777776533 224444444444445567777788777777765443
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.76 E-value=0.047 Score=43.47 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=53.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCH
Q 006437 97 TGRFETVRGIVGELARVGCVIK--AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPN----TFARNIVMDVLFKIGRV 170 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~ 170 (645)
.|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+..++...|+.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCH
Confidence 5777777777777777664332 2344555566667777777777777766532 22 22222233345556666
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHH
Q 006437 171 DLGIKVLKETQLPNFLSFNIALCNL 195 (645)
Q Consensus 171 ~~A~~~~~~~~~~~~~~~~~ll~~~ 195 (645)
++|++.+-....++...|..-|..|
T Consensus 92 ~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 92 KEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666544333333444444433
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.12 Score=43.35 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
..++..+...|++++|..+.+.+....+- |...|..++.+|.+.|+..+|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555554332 4555555555555555555555555544
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.70 E-value=0.49 Score=43.58 Aligned_cols=176 Identities=11% Similarity=0.051 Sum_probs=104.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDN-YS---FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
....+.+.|++++|++.|+++...- |+. .. .-.+..++.+.++++.|...+++.++..|.....-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4445667899999999999988753 332 22 23456677888999999999999988876544433433333332
Q ss_pred h--cC---------------C---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437 474 E--AG---------------R---CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533 (645)
Q Consensus 474 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 533 (645)
. .+ + ..+|...|+++++.- |+. .-..+|...+..+.+ .--..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~ya~~A~~rl~~l~~---~la~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QYTTDATKRLVFLKD---RLAKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hhHHHHHHHHHHHHH---HHHHH
Confidence 1 11 1 233445555555442 322 223334333333321 00011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVIDA--RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.+ .+.+-|.+.|.+..|..-++.+++. +..........++.+|.+.|..++|.+....+.
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 4456677888888888888888763 223345666777788888888888887766553
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.34 Score=49.12 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=107.9
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
--++++.+.|-.|+... +...++-.|++.+|-++|.+ .|.-..|+++|..|.--
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----- 674 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----- 674 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-----
Confidence 34556677776677643 44566778888898888875 45555555555544321
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CcCHHhHHHHHHHHHhcCCHHHHHHH-------------HHHHHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLMITL--GT-SLSVNAWTVLIDGFRRLRRLDMAGYL-------------WEKMVQ 283 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~~~~~~a~~~-------------~~~m~~ 283 (645)
-...-+...|..++-..+.+.-.+. +. +|. +....+...|+.++|..+ -.++..
T Consensus 675 -----D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 675 -----DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred -----HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 0122233333333322222211110 00 111 122333344444444433 322221
Q ss_pred cCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437 284 NGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF 363 (645)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (645)
.+..+...+..-+.+...+..|-++|..|-+. ..++......+++.+|..+-+...+ +.||+ |
T Consensus 745 ----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y 807 (1081)
T KOG1538|consen 745 ----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--Y 807 (1081)
T ss_pred ----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--c
Confidence 13334444444445556666777777666432 3455666777778887777666544 23332 2
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006437 364 CSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK 421 (645)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 421 (645)
-....-++...++++|.+ +|.+.|+-.+|.++++++...
T Consensus 808 ~pyaqwLAE~DrFeEAqk-------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQK-------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred chHHHHhhhhhhHHHHHH-------------------HHHHhcchHHHHHHHHHhhhh
Confidence 223333344444444443 456778888888888887654
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.34 Score=46.96 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006437 430 FVGLLRGLCGARKIDEAINVYQGIVMNN---PAVNAHVHTAIVDRLIE---AGRCHKAIQLFRRAIVEKYPLDVVSYTVA 503 (645)
Q Consensus 430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 503 (645)
...++-+|....+++...++.+.+...- +.-...+-....-++.+ .|+.++|++++..++.....+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556777778888888877776541 11122222334445556 78888888888886655556777788777
Q ss_pred HHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH----HHHHHCCC---
Q 006437 504 IRGLLE---------GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN----IKMVKRLL----QDVIDARI--- 563 (645)
Q Consensus 504 ~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----~~~a~~~~----~~~~~~~~--- 563 (645)
.+.|.. ....++|+..|.+.-+ +.||...=-.++..+...|. -.+..++- ..+.+.|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 776642 1246778888888766 44654432222222222332 11222222 11222332
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 564 ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 564 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
..|-.-+.+++.+..-.|+.++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 224455667788888899999999999999854
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.045 Score=50.78 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+-.+..+|...|++++|...|+.+.+. .|+ ...+..+...+...|+.++|.++++.+++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444431 121 22233333334444444444444444443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.61 E-value=0.046 Score=50.72 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=51.4
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCH
Q 006437 438 CGARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRT 513 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 513 (645)
.+.|++++|...|+.+++..+... ...+-.+..+|...|++++|...|+.+.+.. .+.....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444556666666666655544321 2344556666666666666666666666432 011233444445556666777
Q ss_pred HHHHHHHHHHhhCCCCCCH
Q 006437 514 EEAYILYSQMKHIAVPPNA 532 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p~~ 532 (645)
++|..+|+++.+ ..|+.
T Consensus 234 ~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHHHH--HCcCC
Confidence 777777777665 34543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.015 Score=41.92 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
.|.+.+++++|.++++.++..+ |.++..|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444444444444442 22344444444444455555555555554444
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.57 E-value=0.022 Score=54.00 Aligned_cols=133 Identities=8% Similarity=-0.072 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCC-CCHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAI----VEKYP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMK----HIAVP-PNAY 533 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~ 533 (645)
.|..|.+.|.-.|+++.|....+.-+ +-|-+ .....+..+.++++-.|+++.|.+.|+.-. +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555566678888877654322 11211 124567778888888899999988888743 33322 2345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID----A-RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
+..+|..+|.-..++++|+.++.+-.. . +..-....+.+|..++...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677788888888889999888775432 1 11224677888999999999999988887766544
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.48 E-value=0.51 Score=42.22 Aligned_cols=171 Identities=17% Similarity=0.101 Sum_probs=95.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFT--PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA 475 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 475 (645)
....+...|++.+|+..|+.+...... -.....-.++.++.+.|+++.|...++.+++..|.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344567789999999999998875211 112345567778888999999999999998887654433333222222211
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437 476 -------------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF 542 (645)
Q Consensus 476 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 542 (645)
+...+|...|+.++ .-|-......+|...+..+.+. --.. -..+.+-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHH
Confidence 11233444444443 3333344445555444444320 0011 12245667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChhHHH
Q 006437 543 CKERNIKMVKRLLQDVIDARIE--LDYHTSIRLTKFIFKFHSSSSAV 587 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 587 (645)
.+.|.+..|..-++.+++.=+. ........++.+|.+.|..+.|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888888764222 12345667777888888777443
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.47 E-value=0.099 Score=43.63 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
..|++++|..+|+-+.-.+ .-|..-+..|..+|-..+++++|...+......+.. |+..+-....+|...|+.+.|.+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 4555555555555544421 113334444444444555555555555555443332 44444445555555555555555
Q ss_pred HHHHHHH
Q 006437 589 QLVEMCN 595 (645)
Q Consensus 589 ~~~~m~~ 595 (645)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555543
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.09 Score=50.31 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF 576 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 576 (645)
..+++.+..+|.+.+++.+|++...+.++.+ ++|...+.-=..+|...|+++.|+..|+++++..+. |...-+.|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4467788889999999999999999999865 568888888899999999999999999999997665 67778888887
Q ss_pred HHhcCChhHH-HHHHHHHHHC
Q 006437 577 IFKFHSSSSA-VNQLVEMCNL 596 (645)
Q Consensus 577 ~~~~g~~~~A-~~~~~~m~~~ 596 (645)
-.+..+..+. .++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 7776666654 6788888644
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.41 E-value=0.014 Score=42.01 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.|.+.+++++|.+.++.+.. +.| +...+......+...|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555555555555544 223 333444444444455555555555555444
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.34 E-value=0.35 Score=38.32 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
....+..+...|+-+.-.+++.++... -.+++..+..+..||.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555432 245555555666666666666666666665555554
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=1.1 Score=43.21 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=40.2
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437 403 CKAGFPNQAVKLYNTMLDK---GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (645)
.+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+..+|+.--+...+.... -+..+..-..++...++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555442 12333334444444445556666655555444332211 1111112223333445566
Q ss_pred HHHHHHHHHHHC
Q 006437 480 KAIQLFRRAIVE 491 (645)
Q Consensus 480 ~a~~~~~~~~~~ 491 (645)
+|.+-|++..+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 666666655543
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.23 E-value=0.12 Score=41.75 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
..++..++.++++.|+++....+++..-..+ ++.. ...+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456667777777777777766665543221 1110 00000 11233477899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcC
Q 006437 542 FCKERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 542 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 581 (645)
|+..|++..|.++++.+.+ .+++.+..+|..|++-....-
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999874 678888999999987655443
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.22 E-value=0.078 Score=51.97 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV----VSYTVAIRGLLEGGRTEEAYILYSQMKHI 526 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 526 (645)
+...++.+..+|.+.|++++|...|++.++.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677888888888888888888888888764 542 35888888888888888888888888774
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=1.3 Score=42.34 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=22.5
Q ss_pred hcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437 166 KIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMV 212 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 212 (645)
+.|..+.|...-+... +.-...+...+...|..|+++.|+++++.-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455555555444332 1122344555555555555555555555443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.018 Score=42.18 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LD-YHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.+++.+...|...|++++|+..+++..+. |.. |+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555566666666555555431 111 11 4455666666666666666666666554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.98 E-value=1.1 Score=40.07 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=33.1
Q ss_pred cCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 006437 97 TGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF 148 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (645)
.|++.+|...|+.+..... +-.......++.++.+.|+++.|...++..++.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4778888888877766531 223345556677777778888887777777654
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.98 E-value=1.4 Score=42.76 Aligned_cols=33 Identities=3% Similarity=0.054 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 530 PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
.+..-+.+++.++.-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 466677777888888888888888888887653
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=95.89 E-value=0.7 Score=38.71 Aligned_cols=90 Identities=11% Similarity=-0.044 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI 548 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 548 (645)
..-+...|++++|..+|+-+.-.+ +-|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 344556788888888888777654 3356667777777777888888888888766533 23555566677788888888
Q ss_pred HHHHHHHHHHHH
Q 006437 549 KMVKRLLQDVID 560 (645)
Q Consensus 549 ~~a~~~~~~~~~ 560 (645)
+.|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.78 E-value=0.74 Score=36.57 Aligned_cols=140 Identities=13% Similarity=0.200 Sum_probs=82.7
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006437 438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAY 517 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 517 (645)
.-.|.+++..++..+...+. +..-+|.++--....-+-+-..++++.+-+ --|.. ..|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 34678888888888777654 344445444444443333334444443322 22322 234444444
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
..+-.+ ..++.-+...+.....+|+-+.-.++...+.+ +-++++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443332 23456667778888999999999999988876 446789999999999999999999999999999998
Q ss_pred CC
Q 006437 598 LI 599 (645)
Q Consensus 598 ~~ 599 (645)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.73 E-value=0.84 Score=46.79 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAI-RGLLEGGRTEEAYILYSQMKHIA--V-PPNAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~ll~~~~~~g~~~~a 551 (645)
...+.|.++++.+.++- |+...|...- +.+...|++++|++.|++..... . +.....+.-+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34566666666666542 4544443332 33445566666666666544211 1 11233444555666666667777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCCh-------hHHHHHHHHHH
Q 006437 552 KRLLQDVIDARIELDYHTSIRLT-KFIFKFHSS-------SSAVNQLVEMC 594 (645)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~ 594 (645)
.+.+..+.+.+-- ...+|..+. .++...|+. ++|.+++++..
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666654322 233332222 334455555 66666666553
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.31 Score=45.30 Aligned_cols=154 Identities=14% Similarity=0.041 Sum_probs=108.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHH--HHHHHHHHhcCCHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN-NPAVNAHVH--TAIVDRLIEAGRCHK 480 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~~~ 480 (645)
..|+..+|-..|+++.+. .+.|...+...-.+|...|+...-...+++++.. +......+| ..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 478888888888888876 5667777777888899999999988888888876 444433333 345556678899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA---VPPNAYTYRVMLLSFCKERNIKMVKRLLQD 557 (645)
Q Consensus 481 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 557 (645)
|++.-++..+.+ +.|.-.-.+....+--.|++.++.++..+-...- --.-..-|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999888775 4455555667777777889999988866654321 111123344445555666889999999985
Q ss_pred HH
Q 006437 558 VI 559 (645)
Q Consensus 558 ~~ 559 (645)
=+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
No 226
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.69 E-value=2.1 Score=41.12 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 337 (645)
.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. +-.+..|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334445555666666655544443 25666666666666666666655554321 1133556666666666
Q ss_pred cCCHHHHHHHHHH
Q 006437 338 MGSYDDALDVYDG 350 (645)
Q Consensus 338 ~~~~~~a~~~~~~ 350 (645)
.|+..+|..+...
T Consensus 250 ~~~~~eA~~yI~k 262 (319)
T PF04840_consen 250 YGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHh
Confidence 6666666655544
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.66 E-value=0.023 Score=41.61 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHI--AVP---PN-AYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666666666666666666665421 011 11 34566667777777777777777776543
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.55 E-value=0.14 Score=48.83 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCChh
Q 006437 222 MFEILLNCFCKMGRIAEAYQLLGLMI----TLGTS-LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ----NG-CSPNVV 291 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~ 291 (645)
.|..|...|.-.|+++.|+...+.-. +.|-. .....+..+.++++-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56667777777889999988776543 22321 1234677888899999999999998887543 22 122345
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 292 TYTSLIKGFMEAKMFSIAFSFLDMLESE-----GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (645)
+..++...|.-..++++|+.++.+-... ...-....+.++..++...|..++|+...+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667778888888899999887654321 1123456788899999999999999988776654
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=4.1 Score=43.25 Aligned_cols=148 Identities=10% Similarity=0.082 Sum_probs=86.7
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHH----HHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006437 49 APHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMI----SVVTRLTGRFETVRGIVGELARVGCVIKAQTFLL 124 (645)
Q Consensus 49 ~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 124 (645)
+.......+..-.-+..|+.+-..- + .+...-..+. +.+-+ .|++++|...|-+-...- .| ..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~--~d~d~~~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~l-e~-----s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----H--LDEDTLAEIHRKYGDYLYG-KGDFDEATDQYIETIGFL-EP-----SE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----C--CCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHcccC-Ch-----HH
Confidence 3344445555556677777765432 2 2333333333 33334 688999888776654321 11 23
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChh-hHHHHHHHHHhcCCcch
Q 006437 125 FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFL-SFNIALCNLCKLNDVSN 203 (645)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~ 203 (645)
+++-|........-...++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+........ -....+..+.+.+-.++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 455666666777777788888888854 4444467888999988888887777765521111 24455555555555555
Q ss_pred HHHHHHH
Q 006437 204 VKDVIGM 210 (645)
Q Consensus 204 a~~~~~~ 210 (645)
|..+-..
T Consensus 482 a~~LA~k 488 (933)
T KOG2114|consen 482 AELLATK 488 (933)
T ss_pred HHHHHHH
Confidence 5554433
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.45 E-value=0.99 Score=46.29 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----hhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKG-FTPDN-----YSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHV 464 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (645)
...+++...-.|+-+.+++.+.+-.+.+ +.-.. -.|...+..++. ....+.|.++++.+....|+ ....
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHH
Confidence 3445555666788888888887765532 22111 134444444433 45788899999999887765 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEK--YP-LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
.-.-.+.+...|++++|.+.|++..... .+ .....+--+...+.-.+++++|...|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3345667778899999999999766421 11 123345556667788899999999999998743 3355566665555
Q ss_pred H-HhcCCH-------HHHHHHHHHHH
Q 006437 542 F-CKERNI-------KMVKRLLQDVI 559 (645)
Q Consensus 542 ~-~~~g~~-------~~a~~~~~~~~ 559 (645)
| ...|+. ++|.++++++-
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 5 456777 78888888775
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.39 E-value=0.25 Score=39.80 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHH
Q 006437 458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE-KYPLDVVSYTVAIRG 506 (645)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 506 (645)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555555555555555555555555555443 333345555555543
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.37 E-value=2.7 Score=40.28 Aligned_cols=254 Identities=13% Similarity=0.055 Sum_probs=137.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhchHHHHH----HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 006437 267 RLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK----GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYD 342 (645)
Q Consensus 267 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 342 (645)
-.|+++.|.+-|+.|.. |..+-..=++ ...+.|..+.|..+-+..-..... -.-.....+...|..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChH
Confidence 35666666666666664 2222211122 223445666666655555443211 2234555666677777777
Q ss_pred HHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 006437 343 DALDVYDGLLELKL-VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYF---CKAGFPNQAVKLYNTM 418 (645)
Q Consensus 343 ~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m 418 (645)
.|+++++.-+...+ .++..-- .-..|+.+- .-..+...|...-.+.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR------------------------------~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAER------------------------------SRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHH------------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 77777765544221 1111100 000111100 0112234444443333
Q ss_pred HHCCCCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCC
Q 006437 419 LDKGFTPDNYS-FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI-QLFRRAIVEKYPLD 496 (645)
Q Consensus 419 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 496 (645)
.+ +.||..- -.....++.+.|++.++-.+++.+-+..+.|++. .+..+.+.|+..... +-.+.+...+ +.+
T Consensus 256 ~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk-~nn 328 (531)
T COG3898 256 NK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLK-PNN 328 (531)
T ss_pred hh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcC-ccc
Confidence 33 3455332 2233456788888888888888888877766543 233344555432211 1122222222 235
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCc
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC-KERNIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~ 565 (645)
..+.-.+..+-...|++..|..--+.... ..|....|..|.+.-. ..||-.++..++.+..+..-+|
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 66666777777788888888877777766 6788888888877764 4488889988888887654333
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=95.33 E-value=1.9 Score=42.82 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437 478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQ 556 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 556 (645)
..+|.++.++.++.+ +.|......+..+....++++.|..+|++... +.|| ..+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555555554 34555555555555556666666666666665 4454 3445555555566666666666666
Q ss_pred HHHH
Q 006437 557 DVID 560 (645)
Q Consensus 557 ~~~~ 560 (645)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6554
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=2.6 Score=38.99 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE 515 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 515 (645)
.....|++.+|..+|.......++ +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 446678888888888888877655 4556667888888889999998888876544211111112223334444444444
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 006437 516 AYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID--ARIELDYHTSIRLTKFIFKFHSSSSAVNQL 590 (645)
Q Consensus 516 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 590 (645)
...+-.+... .| |...-..+...+...|+.+.|.+.+-.+.+ .+.. |...-..|++.+.-.|.-+.+...+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444444443 45 666777778888888888888877766654 3444 6667777777777777555443333
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1.6 Score=36.27 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437 430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE 509 (645)
Q Consensus 430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (645)
...++..+...+.......+++.+...+. .+...++.++..|++.+ .++..+.++. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 33455555556666777777776666653 46666677777776543 3333344332 1 233445556677777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437 510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE-RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF 578 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (645)
.+.++++.-++.++.. ..... ..+... ++++.|.++..+. .++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al----~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAI----VTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHH----HHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766532 11122 222222 6777777766641 25666766666554
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.06 E-value=0.74 Score=46.46 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=87.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV 176 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 176 (645)
+++++.+.+..+.=.-.. ..+......+++.+-+.|..+.|+++-.+- ..-.....+.|+.+.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHH
Confidence 466666655553110000 123555777777777778888877764432 1234556677888888777
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 006437 177 LKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN 256 (645)
Q Consensus 177 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (645)
.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------ 403 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------ 403 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence 76654 455777777777777777777777765432 4556666777777777777766666544
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 257 AWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 257 ~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
-+|....++.-.|++++..+++.+
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244445555556676666666554
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=5.9 Score=42.12 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
++..+.+..+.+.+..+.+..-+ -++..|..++..+.+.+..+.-.++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v 759 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIV 759 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHH
Confidence 44455555566666655555432 15566666666666666444433333
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.95 E-value=0.66 Score=45.75 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTAIVDRLIEAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 491 (645)
+.+...+..+..+|...|++++|...|++.++.++.... ..|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888999999999999999999999998776332 46899999999999999999999999885
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.78 Score=42.76 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=102.1
Q ss_pred hcCCcccHHHHHhcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHcCCCHHH
Q 006437 372 LSGRFSLLPKLVCGL--EVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSF----VGLLRGLCGARKIDE 445 (645)
Q Consensus 372 ~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~ 445 (645)
-.|+..+|...++++ ..+.|...++..=.+|...|+.+.....++++... ..||...| ..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666655444322 23457788888888999999999999999988765 23343333 333345567899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-D---VVSYTVAIRGLLEGGRTEEAYILYS 521 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~ 521 (645)
|++.-++..+.+.. |.-...+..+.+--.|++.++.++..+-... ... + ..-|=...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99998888877655 7777788889999999999999987764322 010 0 1112222334556689999999998
Q ss_pred HHh
Q 006437 522 QMK 524 (645)
Q Consensus 522 ~m~ 524 (645)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 743
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.94 E-value=0.59 Score=36.96 Aligned_cols=91 Identities=20% Similarity=0.168 Sum_probs=54.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCC
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKERN 547 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~ 547 (645)
+....|+++.|++.|.+.+..- |-....||.-..++.-.|+.++|+.-+.+..+..-.-+ ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777666542 34566677777777777777777776666655321111 1223333344566667
Q ss_pred HHHHHHHHHHHHHCC
Q 006437 548 IKMVKRLLQDVIDAR 562 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~ 562 (645)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777776666666655
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.65 Score=44.71 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
..++..+.-++.+.+++..|++.-++.+..+ ++|+...--=..+|...|+++.|...|+++++ +.|+......=+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456678889999999999999999999886 67888888888999999999999999999999 78865555544444
Q ss_pred H-HhcCC-HHHHHHHHHHHHH
Q 006437 542 F-CKERN-IKMVKRLLQDVID 560 (645)
Q Consensus 542 ~-~~~g~-~~~a~~~~~~~~~ 560 (645)
| .+... .+...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 4 33333 3344677777753
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.70 E-value=0.46 Score=43.07 Aligned_cols=89 Identities=12% Similarity=0.225 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 006437 81 HDVQSFDHMISVVTRL----TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE----------------MYGMVLE 140 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 140 (645)
.+-.+|-+++..|... .+..+-....++.|...|+.-|.++|..|+..+-+.. .-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4778888888887752 4667777788899999999999999999998765432 2345788
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 141 AFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
++++|..+|+.||..+-..|++++.+.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 99999999999999999999999977664
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.57 E-value=2.3 Score=35.29 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=67.5
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006437 48 LAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLR 127 (645)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 127 (645)
+.+..+...+...+.+.....+++++....+ .++...+.++..+++ . +.....+.++. . .+......+++
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~-~-~~~~ll~~l~~---~---~~~yd~~~~~~ 77 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK-Y-DPQKEIERLDN---K---SNHYDIEKVGK 77 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH-H-CHHHHHHHHHh---c---cccCCHHHHHH
Confidence 3455555566666677777777777766543 566777777777777 2 23333344332 1 12233444666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-CCHhHHHHHHhhcCCCChhhHHHHHHHH
Q 006437 128 IYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI-GRVDLGIKVLKETQLPNFLSFNIALCNL 195 (645)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 195 (645)
.|.+.+.++++..++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 66666666666666655432 11122223333 5566666655542 2333444444443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.56 E-value=0.96 Score=44.87 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=12.0
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006437 474 EAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~ 491 (645)
.+....++.+++++.++.
T Consensus 212 eA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKA 229 (539)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 345577788888776544
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=0.71 Score=42.07 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIR 572 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 572 (645)
.|+.-+.. .+.|++..|..-|....+. -|+ ...+..|..++...|++++|..+|..+.+.-++- -+..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 3456677777777777663 232 3456667777777788888777777776533221 2466667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 006437 573 LTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 573 l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
|.....+.|+.++|...|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777778888887777777643
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.12 E-value=0.15 Score=32.09 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 006437 503 AIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
+...|.+.|++++|+++|+++.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=1.8 Score=43.68 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF 407 (645)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (645)
.+.++.-+-+.|-.+.|+++-.+-.. -.+...++|+++.|.++.+.. .+...|..|.....+.|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcCC
Confidence 44555555555555555555432211 123334445555555544332 245566666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006437 408 PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFR 486 (645)
Q Consensus 408 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (645)
++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666654432 44455555556666655555555444431 2333334444455555555444
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.09 E-value=4.5 Score=36.77 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=83.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-HHHhc
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDK-GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD-RLIEA 475 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 475 (645)
....+...+....+...+...... ........+......+...++...+...+.........+ ......... .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHc
Confidence 333444444444444444444321 112223333333444444444555555555544433222 111111111 45555
Q ss_pred CCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKY--PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a 551 (645)
|+++.|...+++...... ......+......+...++.+.|...+.+.... .++ ...+..+...+...++++.+
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHH
Confidence 555555555555533110 011222222223344455556666665555542 222 44555555555555556666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 552 KRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
...+......... ....+..+...+...+..+++...+.+..
T Consensus 222 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 222 LEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665555543222 22333333333334445555555555544
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.07 E-value=5.6 Score=37.82 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CcCHHhHHHHHHHHHhcCC--
Q 006437 202 SNVKDVIGMMVRKGFYPNVRMFEILLNCFCK--MG----RIAEAYQLLGLMITLGT---SLSVNAWTVLIDGFRRLRR-- 270 (645)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~-- 270 (645)
++...+++.|.+.|+.-+..+|.+..-.... .. ....|.++|+.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556678888888888777776654333333 22 35568888888887643 2344556655544 3333
Q ss_pred --HHHHHHHHHHHHHcCCCCChh-chHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006437 271 --LDMAGYLWEKMVQNGCSPNVV-TYTSLIKGFMEAKM---FSIAFSFLDMLESEGHAPDLVFHNVLI 332 (645)
Q Consensus 271 --~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll 332 (645)
.+.++.+|+.+.+.|...+.. -+.+-+-+++.... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 356677788888777655332 23333333332221 446778888888888887777766554
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.03 E-value=2.7 Score=41.71 Aligned_cols=123 Identities=12% Similarity=0.023 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437 477 RCHKAIQLFRRAIVE-KYPLD-VVSYTVAIRGLLE---------GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE 545 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 545 (645)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356677777777721 12233 4444444444332 234667888888888854 44899999999988889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
++++.|...|++....++. ....|......+.-+|+.++|.+.+++.. ...|-..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al--rLsP~~~ 406 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL--QLEPRRR 406 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCchhh
Confidence 9999999999999987665 56777777788888999999999999966 3666555
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.99 E-value=13 Score=41.57 Aligned_cols=172 Identities=16% Similarity=0.060 Sum_probs=90.2
Q ss_pred HhcCChhHHHHHHHHHHhC-----CCCCCH--hhHHHHHHHHHhcC--CHHHHHHHHHHHH--HCC---CCCCHhhHHHH
Q 006437 301 MEAKMFSIAFSFLDMLESE-----GHAPDL--VFHNVLIDCLSKMG--SYDDALDVYDGLL--ELK---LVPDSYTFCSL 366 (645)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~-----~~~~~~--~~~~~ll~~~~~~~--~~~~a~~~~~~~~--~~~---~~~~~~~~~~l 366 (645)
..++++.+-+-+++++.+. .++.|. .-|...+..+...| -+++++.+.++-. ..+ ..|+...+..+
T Consensus 862 ~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred HhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence 3445666666666666532 011111 12334444444444 3444444433210 000 24555555544
Q ss_pred HHHH----HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHcC
Q 006437 367 LSTV----CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY--SFVGLLRGLCGA 440 (645)
Q Consensus 367 l~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~ 440 (645)
..+| .....+++|.-+|+..+. ..--+.+|...|++.+|+.+..++... -+.. +-..|+..+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 4443 345666666666544331 123456666777777777776665432 1211 124566667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
++.-+|-++..+.... ..-.+..|++...+++|.++.....
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7777777777665432 2335667788888888888766543
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=4.5 Score=36.25 Aligned_cols=176 Identities=8% Similarity=0.041 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006437 83 VQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMD 162 (645)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (645)
...|..-..+|-. .++++.|...+.+..+- ..-+...|. ....++.|.-+.+++.+. +--+..++.-..
T Consensus 31 as~yekAAvafRn-Ak~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRN-AKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 4445555555555 67777777776665432 112222221 122335555555555543 222334455556
Q ss_pred HHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC---C--CCCCHhhHHHHHHHHHhcCCHH
Q 006437 163 VLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK---G--FYPNVRMFEILLNCFCKMGRIA 237 (645)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~~~~~ 237 (645)
+|..+|..+.|-..+++.- -..++.++++|++++++.... + .+--...+..+-+.+.+...++
T Consensus 100 lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666666665555544321 122344555666665554321 1 0011123344444555555555
Q ss_pred HHHHHHHHHHHc----CCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 238 EAYQLLGLMITL----GTSLS-VNAWTVLIDGFRRLRRLDMAGYLWEKM 281 (645)
Q Consensus 238 ~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 281 (645)
+|-..+..-... .--++ ...|-..|-.|.-..|+..|.+.++.-
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 554444332211 00111 122334444444455555565555553
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.91 E-value=4.8 Score=36.53 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARN 158 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (645)
|-...|+.-+..+-+ |++++|.+.|+.+.+... +....+...++-++-+.+++++|+...++..+.........|.
T Consensus 33 p~~~LY~~g~~~L~~--gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQK--GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 334555655555544 899999999999986532 3355677778888889999999999998887553333334555
Q ss_pred HHHHHHH
Q 006437 159 IVMDVLF 165 (645)
Q Consensus 159 ~ll~~~~ 165 (645)
..|.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 5566655
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.90 E-value=0.77 Score=41.70 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=73.0
Q ss_pred CCCHhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437 424 TPDNYSFVGLLRGLCG-----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498 (645)
Q Consensus 424 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 498 (645)
.-|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 4466777777777653 3567777777788888888888888888887665432 1221 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN 547 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 547 (645)
.+....-.|-+ +-+-++.++++|...|+.||..+-..|+.++.+.+-
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22222222322 235689999999999999999999999999987764
No 255
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=11 Score=39.72 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=61.7
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437 427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG 506 (645)
Q Consensus 427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (645)
..+.+--+..+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344555555666677777766654432 3456666666666666666666555444321 24556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 554 (645)
|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.+.
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 6777777777666554422 11 345556666666666544
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=1.2 Score=40.57 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=36.0
Q ss_pred HcCChHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFT--PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 479 (645)
+.|++..|...|...++.... -....+-.|.+++...|+++.|..+|..+.+..++. -+..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555443210 011223344444444555555555554444443221 1223333344444444444
Q ss_pred HHHHHHHHHHH
Q 006437 480 KAIQLFRRAIV 490 (645)
Q Consensus 480 ~a~~~~~~~~~ 490 (645)
+|..+|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.54 E-value=0.94 Score=41.99 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH-----IAVPPNAYTYR 536 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 536 (645)
..++..++..+..+|+.+.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667778888888888888888888765 55778888888888888888888888887653 56777666655
Q ss_pred HHHHH
Q 006437 537 VMLLS 541 (645)
Q Consensus 537 ~ll~~ 541 (645)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.50 E-value=10 Score=38.89 Aligned_cols=185 Identities=15% Similarity=0.065 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+...|..-+......|+.+.+.-+|+...-. +..-...|-..+.-....|+.+.|..++....+-..+..+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4557777778788888888888888776531 111122233333333344888888777776655544322222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHHHhhCCCCCCHHHHHHHHHHH----
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAY---ILYSQMKHIAVPPNAYTYRVMLLSF---- 542 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~ll~~~---- 542 (645)
..-..|+++.|..+++.+.+.- |+ +..-..-+....+.|+.+.+. +++....+. .-+..+...+.--+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 2334578999999998888764 44 222223334455677777777 444433331 22333333333222
Q ss_pred -HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437 543 -CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 543 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 581 (645)
.-.++.+.|..++.++.+..+ ++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCC
Confidence 345778888888888877543 36777888887776655
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.36 E-value=2.1 Score=34.06 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCH---HHHHHHHHHHHhcC
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA-RIELDY---HTSIRLTKFIFKFH 581 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g 581 (645)
+...|+.+.|++.|.+... +.| +...|+.-..++.-+|+.++|+.-+.+..+. |.+ .. ..|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3455556666666655554 333 4555555556666566666665555555542 222 21 22333333455555
Q ss_pred ChhHHHHHHHHHHHCC
Q 006437 582 SSSSAVNQLVEMCNLG 597 (645)
Q Consensus 582 ~~~~A~~~~~~m~~~g 597 (645)
+.+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555555444
No 260
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.28 E-value=7.7 Score=36.89 Aligned_cols=131 Identities=14% Similarity=0.200 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--C----CCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCC-
Q 006437 408 PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG--A----RKIDEAINVYQGIVMNNPA---VNAHVHTAIVDRLIEAGR- 477 (645)
Q Consensus 408 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~- 477 (645)
+++.+.+++.|.+.|+.-+..+|.+....... . .....|..+|+.|.+..+- ++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888887777666553333222 1 2345677778888777542 233333333322 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437 478 ---CHKAIQLFRRAIVEKYPLDV--VSYTVAIRGLLEGG--RTEEAYILYSQMKHIAVPPNAYTYRVMLL 540 (645)
Q Consensus 478 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 540 (645)
.++++..|+.+.+.|+..+- ...+.++...-... ...++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34556666666666655432 22222222211111 13456677777777776665555544433
No 261
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.20 E-value=14 Score=39.60 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhc
Q 006437 224 EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRL 268 (645)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (645)
=.+|-.|.+.|++++|.++.....+. .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34677788889999998888555433 344556677777777765
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.19 E-value=3.4 Score=33.86 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 439 GARKIDEAINVYQGIVMNNPA--VNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 491 (645)
+.|++++|.+.|+.+....+. -....--.++.+|.+.++++.|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444443221 12222333444444444444444444444443
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=7.3 Score=36.19 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=82.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-hhHH---HHHHHHHhcCCcc
Q 006437 127 RIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-LSFN---IALCNLCKLNDVS 202 (645)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~ll~~~~~~g~~~ 202 (645)
......|++..|..+|....... +-+...--.|...|...|+++.|..++..++.... ..+. .-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888877654 33455666777888888888888888888773221 1222 2344455555555
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHhHHHHHHHHHhcC
Q 006437 203 NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLG-TSLSVNAWTVLIDGFRRLR 269 (645)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~ 269 (645)
+..++-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555544432 1255566666777777777777766655554431 1223444445555544444
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.14 E-value=17 Score=40.54 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY--TYRVMLLSF 542 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~ 542 (645)
|.+..+.+...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++.. .-+.. +-..|...+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 34444444555566666555554322 12334556666677777666666542 11211 124555666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006437 543 CKERNIKMVKRLLQDVI 559 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~ 559 (645)
..+++.-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 66666666666665543
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.12 E-value=8 Score=36.62 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437 222 MFEILLNCFCKMGRIA---EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK 298 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (645)
++..++.+|...+..+ +|..+++.+.+.. +-.+.++-.-++.+.+.++.+++.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 5566677777666544 4555555554432 2234555556677777888888888888888652 213445555555
Q ss_pred HHHh--cCChhHHHHHHHHHHhCCCCCCH
Q 006437 299 GFME--AKMFSIAFSFLDMLESEGHAPDL 325 (645)
Q Consensus 299 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 325 (645)
.+-. ......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5422 23344555555555544344433
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.10 E-value=0.34 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVA 503 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 503 (645)
++..+...|...|++++|.++|+++++.. |-|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566777777777777777777777664 3345555444
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.89 E-value=8.7 Score=36.40 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437 428 YSFVGLLRGLCGARKI---DEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 504 (645)
.++..++.++...+.. ++|..+++.+....+. .+.++-.-++.+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3556677777766654 4566666666555544 34444455566666888999999999988752 21344555555
Q ss_pred HHHHh--cCCHHHHHHHHHHHhhCCCCCCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHHH-CCCCcCHHHH
Q 006437 505 RGLLE--GGRTEEAYILYSQMKHIAVPPNAY-TYRVM-L---LSFCKERN------IKMVKRLLQDVID-ARIELDYHTS 570 (645)
Q Consensus 505 ~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l-l---~~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~ 570 (645)
..+.. ......|...+..+....+.|... ....+ + ......++ .+...++++.+.+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 55522 233456667777766544566543 11111 1 11122211 4444455554332 2223333332
Q ss_pred HH---H----HHHHHhcCChhHHHHHHHHHH
Q 006437 571 IR---L----TKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 571 ~~---l----~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.. | +..+.+.+++++|.++|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 2 234667899999999988543
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.75 E-value=1.2 Score=41.40 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID-----ARIELDYHTS 570 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 570 (645)
..++..++..+...|+.+.+.+.++++.. ..| +...|..++.+|.+.|+...|+..++.+.+ .|+.|.+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 44555555556666666666666666655 233 555666666666666666666666555542 3444444444
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.54 E-value=0.19 Score=29.51 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=19.1
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 006437 556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAV 587 (645)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 587 (645)
++.++.++. ++..|..|..+|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 444554444 5666667777777777666664
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.49 E-value=13 Score=37.40 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=25.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGI 453 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 453 (645)
+..+.-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344455555555555555433111 11223344455555555555555555443
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.27 E-value=3.1 Score=39.44 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=23.8
Q ss_pred HhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437 301 MEAKMFSIAFSFLDMLESE--GHAPDLVFHNVLIDCLSKMGSYDDALD 346 (645)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~ 346 (645)
....+.++|+..+..-..+ ...---.++..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666555443 011122345555566666666665544
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.10 E-value=8.7 Score=34.53 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIA--VPP-NAYTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
|-..|-.+.-..++..|...++..-+.+ ..| +..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444555556667888888887754322 112 566777777776 456666665554
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.05 E-value=9.3 Score=34.77 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF--TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV 469 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 469 (645)
...|+.-+. -.+.|++++|.+.|+.+..+-. +-...+...++.++-+.++++.|....++.+...+...-.-|-..+
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444433 4578899999999998886521 1224455566677788899999999999888886654444455545
Q ss_pred HHHHhc-------CCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006437 470 DRLIEA-------GRC---HKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML 539 (645)
Q Consensus 470 ~~~~~~-------g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 539 (645)
.+++.- .+. ..|..-|++++.+- ||.. -...|..-...+... - ..-=..+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~---L-A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA---L-AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH---H-HHHHHHHH
Confidence 444421 122 22333334444331 2211 001111111111000 0 00011234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 540 LSFCKERNIKMVKRLLQDVIDARIEL---DYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+-|.+.|.+-.|..-++.|++. ..- ....+-.+.++|.+.|-.++|.+.-+-+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 5566677777777777777664 211 23344455566777777777766655554
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.94 E-value=2.5 Score=36.66 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL- 540 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~- 540 (645)
.+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--.+.......=+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455667777777777777777777666543332 34556666666777777777776666543211111111111111
Q ss_pred ----HHHhcCCHHHHHHHHHHHH
Q 006437 541 ----SFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 541 ----~~~~~g~~~~a~~~~~~~~ 559 (645)
.+...+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1234567777666665543
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.70 E-value=7.6 Score=33.03 Aligned_cols=134 Identities=10% Similarity=0.136 Sum_probs=84.0
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 006437 205 KDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLR--RLDMAGYLWEKMV 282 (645)
Q Consensus 205 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~ 282 (645)
.+.++.+.+.++.|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 356666777888999999999999999999877655544 4444445444433332222211 1233444444443
Q ss_pred HcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 283 QNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 283 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (645)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+.
T Consensus 90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13566778888999999999988775332 2233455777777777776666666655553
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.34 E-value=8.1 Score=32.66 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=53.4
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-hHHHH--HHHHHhcCCH
Q 006437 196 CKLNDVSNVKDVIGMMVRKGFYPNVR-MFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN-AWTVL--IDGFRRLRRL 271 (645)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~ 271 (645)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-+....|-.. -..-| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666665554321111 11122333445566666666666665433222221 00001 1122344555
Q ss_pred HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437 272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES 318 (645)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (645)
+....-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55544444443332222222333444444455555555555555544
No 277
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.23 E-value=16 Score=36.00 Aligned_cols=456 Identities=11% Similarity=0.094 Sum_probs=250.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006437 66 ALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEM 145 (645)
Q Consensus 66 A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 145 (645)
-+++=+.+...|. |..+|-.|+..+.. .+..+...+.+++|.+.- +.-+..+..-+..=....++..+..+|.+.
T Consensus 28 ~lrLRerIkdNPt---nI~S~fqLiq~~~t-q~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 28 ELRLRERIKDNPT---NILSYFQLIQYLET-QESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHHhhcCch---hHHHHHHHHHHHhh-hhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 3455566666654 89999999999999 899999999999996643 445567777777777788999999999998
Q ss_pred hhCCCCCCHHhHHHHHHHHHhcC-----C----HhHHHHHHhh-c-C-CCChhhHHHH---HHHHHhcCC------cchH
Q 006437 146 GRFGFTPNTFARNIVMDVLFKIG-----R----VDLGIKVLKE-T-Q-LPNFLSFNIA---LCNLCKLND------VSNV 204 (645)
Q Consensus 146 ~~~~~~~~~~~~~~ll~~~~~~g-----~----~~~A~~~~~~-~-~-~~~~~~~~~l---l~~~~~~g~------~~~a 204 (645)
....+ +...|...+.--.+.+ + .-+|.++.-. + . +.....|+.. +...-..|. ++..
T Consensus 103 L~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 103 LKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred Hhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 87644 4556666665444432 1 2222222211 1 1 2222333333 333223333 3444
Q ss_pred HHHHHHHHHCCCC------CCHhhHHHHHHHHHh-------cCCHHHHHHHHHHHHH--cCCC----cCHHhHHHHHH--
Q 006437 205 KDVIGMMVRKGFY------PNVRMFEILLNCFCK-------MGRIAEAYQLLGLMIT--LGTS----LSVNAWTVLID-- 263 (645)
Q Consensus 205 ~~~~~~m~~~~~~------p~~~~~~~ll~~~~~-------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~li~-- 263 (645)
.+.+..|...-+. -|-..|..=+.-... ..-+-.|.+.++++.. .|.. .+..++|-.-+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 5555555543110 011122222211111 1124456666666643 2321 12333333211
Q ss_pred ---------HHHhc-----CC-H-HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437 264 ---------GFRRL-----RR-L-DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327 (645)
Q Consensus 264 ---------~~~~~-----~~-~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (645)
.=... |+ . ....-++++.... +.-....|--.-.-+...++-+.|+.....-... .|.
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--- 334 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--- 334 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---
Confidence 10000 00 0 0111112221111 1112222322223334455666666655443221 233
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437 328 HNVLI-DCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC---LSGRFSLLPKLVCGLEVEADLVVYNALLSYFC 403 (645)
Q Consensus 328 ~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 403 (645)
....+ ..|.-..+.+.+...|+..... ...--..+.+-. ..|+++...+++-.. ...=...|...+..-.
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr-~~k~t~v~C~~~N~v~ 408 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR-INKLTFVFCVHLNYVL 408 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH-HhhhhhHHHHHHHHHH
Confidence 22222 3333344555555555544321 000000000000 122333333333110 0122446677777777
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKG-FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI 482 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 482 (645)
+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-....++ ++.--.-.+..+...++-+.|.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCcHHHHH
Confidence 7788999999999999988 6788888999998765 58888999999987777655 3333355667778889999999
Q ss_pred HHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006437 483 QLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE 545 (645)
Q Consensus 483 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 545 (645)
.+|+..+.+ +..+ ...|..+|.--..-|+...+..+-+.|.+ +-|...+.......|.-.
T Consensus 487 aLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 487 ALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 999966543 1223 46788999888899999999999999988 678777777777666543
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.95 E-value=7.8 Score=31.80 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
....|..-...+.+ |+++.|...|+.+...-. +-....-..++.+|.+.+++++|...+++.++.+..-....|..
T Consensus 10 ~~~ly~~a~~~l~~--~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQK--GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 44455554444444 888888888888877532 22455667778888888888888888888887653333345555
Q ss_pred HHHHHHhc
Q 006437 160 VMDVLFKI 167 (645)
Q Consensus 160 ll~~~~~~ 167 (645)
.+.+++.-
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55555543
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.57 E-value=3.5 Score=35.80 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 188 FNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN--VRMFEILLNCFCKMGRIAEAYQLLGLMI 247 (645)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (645)
+..+..-|++.|+.+.|.+.|.++.+....+. ...+..+|+.....+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555555555555555555554432222 2344555555566666666655555544
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.56 E-value=9.4 Score=32.05 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=21.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+.++.+++..++..+.-. .|..... ..-...+.+.|++.+|+.+++++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554433 2322211 1112233445555555555555443
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.53 E-value=0.63 Score=27.69 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQ 522 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~ 522 (645)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444445555555554444
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.42 E-value=0.61 Score=27.75 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 569 TSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 569 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.21 E-value=10 Score=32.04 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=53.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH---H--HHHHhcCC
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVS-YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM---L--LSFCKERN 547 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---l--~~~~~~g~ 547 (645)
+.+..++|+.-|..+.+.|...-+.. --.+.....+.|+...|...|++.-.- .|.+....-+ - ..+...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHHHhcccc
Confidence 34445555555555554432211111 111112233455555555555555442 2222222111 1 12234455
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437 548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
++....-.+-+...+-......-..|.-+-.+.|++.+|.++|+.+.+....|..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 5555544444432222212233344555555666666666666666544444433
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.82 E-value=0.5 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=12.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAY 517 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~ 517 (645)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.52 E-value=16 Score=33.03 Aligned_cols=168 Identities=19% Similarity=0.164 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR-GLCGARKIDEAINVYQGIVMNNP--AVNAHVHTAI 468 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 468 (645)
...+......+...+++..+...+.........+ ......... .+...|+++.+...+.......+ ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 3445555566666777888888888777653332 122222222 67788899999988888855332 1233444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER 546 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 546 (645)
...+...++.+.+...+.+..... +. ....+..+...+...++.+.|...+..... ..|+ ...+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcC
Confidence 555777889999999999888764 33 367788888888888899999999999887 4454 455555555555677
Q ss_pred CHHHHHHHHHHHHHCCC
Q 006437 547 NIKMVKRLLQDVIDARI 563 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~~~ 563 (645)
..+.+...+.+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 251 RYEEALEALEKALELDP 267 (291)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 78999988888876543
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.34 E-value=13 Score=31.72 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 006437 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
+..+.+.+.+++|+...+..+++.+.+.|++.....++..-.-+|.......+-.+ .+....+.++=-.|.++ =
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR----L 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR----L 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH----h
Confidence 44444556677777777777777777777776666666654444433332222111 12223333333333322 0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLM 246 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 246 (645)
...+..++..+...|++-+|.++....
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 012444555666666666666666554
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.27 E-value=0.86 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 288
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.01 E-value=27 Score=35.13 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK--ERNIKMVKRLLQDVID-ARIELDYHTSIRLTKFI 577 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 577 (645)
+.++.-+.+.|-.++|...+..+.... +|+...|..++..-.. .-+...++++++.|.. .| -|+..|...+..-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 445555556666666666666666521 2345555555432211 1125666777777764 45 4677777776666
Q ss_pred HhcCChhHHHHHHHHH
Q 006437 578 FKFHSSSSAVNQLVEM 593 (645)
Q Consensus 578 ~~~g~~~~A~~~~~~m 593 (645)
...|..+.+-.++-++
T Consensus 541 ~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRA 556 (568)
T ss_pred ccCCCcccccHHHHHH
Confidence 6777777776654443
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.00 E-value=0.051 Score=45.51 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=68.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 006437 261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS 340 (645)
Q Consensus 261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 340 (645)
++..+.+.+.++...++++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455556666677777777777655445566667777777777666766666651 111223446666667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437 341 YDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF 407 (645)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (645)
++++.-++.++....-.. ..+...++++.|.+.+.. ..+...|..++..+...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~al---------~i~~~~~~~~~a~e~~~~---~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEAL---------EILHKLKDYEEAIEYAKK---VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTCS---------STSSSTHCSCCCTTTGGG---CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHHH---------HHHHHHccHHHHHHHHHh---cCcHHHHHHHHHHHHhcCc
Confidence 777766666543321100 012233444444444433 2345566666666555443
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.62 E-value=32 Score=35.47 Aligned_cols=130 Identities=6% Similarity=-0.015 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTF-LLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNI 159 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (645)
.+...|..++.--.. ....+.+..++..+... .|....| ......=.+.|..+.+..+|++-.+ |++.++..|..
T Consensus 43 ~~f~~wt~li~~~~~-~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDS-IEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCc-hhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 455566666655444 34456666666666654 3555443 3333333567888889999988875 45677777776
Q ss_pred HHHHHHh-cCCHhHHHHHHhhcCC------CChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437 160 VMDVLFK-IGRVDLGIKVLKETQL------PNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK 214 (645)
Q Consensus 160 ll~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 214 (645)
.+..+.. .|+.+.....|+.... ....-|...|.--...+++.....+++..++.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6655544 4677777777776541 22334666676666777778888888877764
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.47 E-value=13 Score=30.71 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSY-TVAIRGLLEGGRTEEAYILYSQMKHI 526 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 526 (645)
.++++++..+++.+.-. .|+..-. ..-...+...|++++|.+++++..+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 56666666666666543 2332211 11223345666666666666666653
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.47 E-value=37 Score=35.97 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=69.5
Q ss_pred cCCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437 439 GARKIDEAINVYQGIVM-------NNPAVNAHVHTAIVDRLIEAG-----RCHKAIQLFRRAIVEKYPLDVVSYTVAIRG 506 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (645)
...+.+.|..+++.+.+ .+ .......+..+|.+.. +.+.|..++....+.| .|+... .+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHH
Confidence 34566666666666554 22 2223344555555432 4555666666666665 222222 22222
Q ss_pred HHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437 507 LLE---GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF--CKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 507 ~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 581 (645)
+.. ..+...|.++|......|. +....+..+.-.. ....+...|..++++.-+.| .|....-...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 221 2345667777776666552 2222221111111 12235666666666666665 2221111122222333 5
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 006437 582 SSSSAVNQLVEMCNLGLI 599 (645)
Q Consensus 582 ~~~~A~~~~~~m~~~g~~ 599 (645)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 555555555555554443
No 293
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.19 E-value=41 Score=36.22 Aligned_cols=345 Identities=10% Similarity=0.012 Sum_probs=171.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 006437 75 KQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNT 154 (645)
Q Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 154 (645)
..++.+.....-..-+..+++ .+++....+.+.. .+.+...-.....+....|+.++|......+-..| ...+
T Consensus 91 ~~~~~P~~~~Lr~~~l~~La~-~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p 163 (644)
T PRK11619 91 ANPTLPPARSLQSRFVNELAR-REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLP 163 (644)
T ss_pred HCCCCchHHHHHHHHHHHHHH-ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCC
Confidence 333333333344444555666 5666666552211 13455555566677777777777766666665554 3345
Q ss_pred HhHHHHHHHHHhcCC------------------HhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 006437 155 FARNIVMDVLFKIGR------------------VDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF 216 (645)
Q Consensus 155 ~~~~~ll~~~~~~g~------------------~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 216 (645)
..++.++..+.+.|. ...|..+...+.+........++..+ .+...+..++.. +
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~ 235 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----T 235 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----c
Confidence 556666666665443 22222222222111111111111111 112222221111 1
Q ss_pred CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcC-CCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 006437 217 YPNVRMFEILLNCFC--KMGRIAEAYQLLGLMITLG-TSLS--VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV 291 (645)
Q Consensus 217 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 291 (645)
.|+...-..++.++. ...+.+.|..++....... ..+. ..++..+.......+...+|...++..... ..+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcH
Confidence 123211111222222 3346688888888775432 2222 123444443333443255666666654432 13455
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006437 292 TYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVC 371 (645)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 371 (645)
....-+......++++.+...+..|....- -...-.--+.+++...|+.++|...|+.+... .+|-.++.+-
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~- 385 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQ- 385 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHH-
Confidence 556666677788999999999988865422 23344455777877799999999999987431 2333333221
Q ss_pred hcCCcccHHHHHhcCCCCCC-H-H---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006437 372 LSGRFSLLPKLVCGLEVEAD-L-V---VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEA 446 (645)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~-~-~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 446 (645)
+.|..-... . . ...+. . . .--.-+..+...|....|...+..+.+. .+......+.......|..+.+
T Consensus 386 ~Lg~~~~~~-~-~--~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 386 RLGEEYPLK-I-D--KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred HcCCCCCCC-C-C--CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 122210000 0 0 00000 0 0 0112234566778888888888887764 2344445555555566777766
Q ss_pred HHHHH
Q 006437 447 INVYQ 451 (645)
Q Consensus 447 ~~~~~ 451 (645)
.....
T Consensus 459 i~~~~ 463 (644)
T PRK11619 459 VQATI 463 (644)
T ss_pred HHHHh
Confidence 65544
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.11 E-value=17 Score=31.66 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHH
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFC 543 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 543 (645)
+-+.+.|++++|..-|.+++..- ++. ...|..-..++.+.+.++.|+.-..+..+ +.|+ ...+.--..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 34667888888888888887763 332 34555566678888899999988888887 4453 334444466788
Q ss_pred hcCCHHHHHHHHHHHHHCCCC
Q 006437 544 KERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 544 ~~g~~~~a~~~~~~~~~~~~~ 564 (645)
+...+++|++-++++.+..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcc
Confidence 888999999999999886544
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.87 E-value=8.8 Score=29.14 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437 100 FETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV 163 (645)
Q Consensus 100 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~ 163 (645)
.-+..+-+..+....+.|++....+.+++|.+.+++..|+++++-+. +.| .....|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 33555666666667778888888888888888888888888888776 333 222266666543
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.74 E-value=4.4 Score=30.33 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437 99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV 163 (645)
Q Consensus 99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~ 163 (645)
+.-++.+-+..+....+.|++....+.+++|.+.+|+..|+++++-+. +.|. +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 444566667777777788888889999999988899999999988776 4432 44466665543
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.63 E-value=7.5 Score=33.71 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=67.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPPN-----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK 579 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (645)
+-+.+.|++++|..-|.+.++. +++. +..|..-..++.+.+.++.|+.--.+.++.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3456789999999999999874 2332 234555556778999999999998888887654 33344455678889
Q ss_pred cCChhHHHHHHHHHHHC
Q 006437 580 FHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 580 ~g~~~~A~~~~~~m~~~ 596 (645)
..++++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999854
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.38 E-value=12 Score=35.75 Aligned_cols=126 Identities=8% Similarity=0.013 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-----CH
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYP-----LDVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IAVPP-----NA 532 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p-----~~ 532 (645)
++..++...+.++++++.|+...+--.. .....+-.|...|.+..++++|.-+..+..+ .++.- ..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3444555555555555555554432100 1123455555556666666665555444322 11111 01
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVID----ARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVE 592 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 592 (645)
.....|.-++...|..-.|.+.-++..+ .|-.+ .....-.+.+.|...|+.|.|..-|++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1233444555566666555555555433 22111 122334455566666666666655554
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.26 E-value=1.4 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
.+...+.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33334444444444444444443
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.04 E-value=4.1 Score=30.83 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666654
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.97 E-value=17 Score=30.53 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=39.5
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
...++.+++..++..+.-..|. ....-..-...+...|++.+|..+|+++.... |....-..|+..|.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 4566777777777777665544 22222333445667788888888888876553 33333334443333
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.84 E-value=6.6 Score=29.46 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHH
Q 006437 514 EEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID-ARIELDYHTSIRLT 574 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 574 (645)
-++.+-+..+....+-|++.+....++||.+.+|+..|.++++-++. .+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34555556666666888888888889999999999999998887763 332 344555544
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=11 Score=38.65 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=45.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHH
Q 006437 232 KMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFS 311 (645)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (645)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+..+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555443321 344455555555555555555555544332 3344444555555444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 312 FLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYD 349 (645)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (645)
+-....+.|.. |...-++...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444443321 222233444555555555543
No 304
>PRK09687 putative lyase; Provisional
Probab=86.03 E-value=31 Score=32.61 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
++.......+.++...|..+ +......+.+ .+|+..-..-+.++...|+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
Confidence 45555555555555555422 2222222322 2344444445555555554
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.94 E-value=20 Score=33.40 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC--ChHHHHH
Q 006437 64 LIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELAR-VGCVIKAQTFLLFLRIYWRGE--MYGMVLE 140 (645)
Q Consensus 64 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~ 140 (645)
++-+.|++-+..+....++.. |..|+. + +....+|+.+|+.... ..+--|......+++...... ....-.+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~-N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLVK---R-NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHHH---h-hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 466667766655544333333 555543 2 3446677777774322 234557777777777776522 2233333
Q ss_pred HHHHHh-hCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-----CCChhhHHHHHHHHHhcCCcchHHHHHHH----
Q 006437 141 AFDEMG-RFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-----LPNFLSFNIALCNLCKLNDVSNVKDVIGM---- 210 (645)
Q Consensus 141 ~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---- 210 (645)
+.+.+. ..|-.++..+.-.++..+++.++++.-.++++... ..|...|..+|......|+..-...+.++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL 267 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL 267 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence 334443 33456777788889999999999999999888654 45778899999999999997666555543
Q ss_pred -HHHCCCCCCHhhHHHH
Q 006437 211 -MVRKGFYPNVRMFEIL 226 (645)
Q Consensus 211 -m~~~~~~p~~~~~~~l 226 (645)
+++.|+..+...-..+
T Consensus 268 wikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 268 WIKRNNVDVTDELRSQL 284 (292)
T ss_pred EeeecCCcCCHHHHHHH
Confidence 2233444444443333
No 306
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.28 E-value=59 Score=35.05 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=96.4
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC-----HhhHHHHHHH--HHcCCCHHHHHHHHH--------HHHHcCCCCcHHHHH
Q 006437 403 CKAGFPNQAVKLYNTMLDKGF-TPD-----NYSFVGLLRG--LCGARKIDEAINVYQ--------GIVMNNPAVNAHVHT 466 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~~ll~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 466 (645)
+-.+++..|...++.|.+..- .|+ ...+...+.+ +-..|+++.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457889899999998886421 111 1222233332 335699999999997 455556665655554
Q ss_pred HH--HHHHHh--cCCHHH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcC--CHHHHHHHHHHHh-hC--CCCCC
Q 006437 467 AI--VDRLIE--AGRCHK--AIQLFRRAIVE-KYPL--DVVSYTVA-IRGLLEGG--RTEEAYILYSQMK-HI--AVPPN 531 (645)
Q Consensus 467 ~l--~~~~~~--~g~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~m~-~~--~~~p~ 531 (645)
.+ +-.+.. ....++ +.++++.+... .-.| +..+++.+ +.++.... ...++...+.+.. .. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 42 222222 222333 66666655432 1112 23334444 33333221 1224444433322 11 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHH-----HHHHHHHhcCChhHHHHHHHHHH
Q 006437 532 ---AYTYRVMLLSFCKERNIKMVKRLLQDVIDA---RIELDYHTSI-----RLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 532 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..+++.+...+. .|+..+..++.....+. ..+.....|. .+.+.+...|+.++|.+...+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 223333333334 68877766665554321 1111334443 34455778899999998887764
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.96 E-value=19 Score=30.83 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
+++|...|++..+ ..|+..+|..-+..+. +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4445555555555 5677777766665552 3455555555443
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.69 E-value=8.7 Score=35.87 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437 405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN 457 (645)
Q Consensus 405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 457 (645)
.-++++++.++..=++-|+-||.++++.+++.+.+.+++.+|..+...|+...
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44677888888888888999999999999999999999999988888777654
No 309
>PRK09687 putative lyase; Provisional
Probab=84.43 E-value=37 Score=32.10 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=16.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRG 436 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 436 (645)
.+.++...|.. +|...+..+.+. .||...-...+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 44455555553 455555555543 2344444333333
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.06 E-value=1.6 Score=36.35 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
+..+.+ .+.+..+..+++.+...+...+....+.++..|++.+..+...++++.. +.+-...+++.+.+.|-
T Consensus 14 i~~~~~-~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEE-RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTT-TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHh-CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 333444 4555555555555554443344555555555555555545444444411 11222334444555555
Q ss_pred HhHHHHHHhh
Q 006437 170 VDLGIKVLKE 179 (645)
Q Consensus 170 ~~~A~~~~~~ 179 (645)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.06 E-value=3.6 Score=38.70 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
-.+-|.+.|.+++|+..|.+..... +-|.+++..-..+|.+..++..|+.-......
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3566778888888888887766543 22777777777788888777777666665544
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.96 E-value=37 Score=31.72 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=64.8
Q ss_pred HhHHHHHHhhcC-----CCChhhHHHHHHHHHh-cC-CcchHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437 170 VDLGIKVLKETQ-----LPNFLSFNIALCNLCK-LN-DVSNVKDVIGMMVR-KGFYPNVRMFEILLNCFCKMGRIAEAYQ 241 (645)
Q Consensus 170 ~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 241 (645)
+-+|+.+|+... -.|...-..+++.+.. .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 455666666322 2344444455554443 11 22222333333332 2345667777777888888888888777
Q ss_pred HHHHHHHc-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 242 LLGLMITL-GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
+++..... ++..|...|..+|+.-...||..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77776654 5566777788888877777777655555443
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.90 E-value=3.3 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.125 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+|..+..+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555444
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.90 E-value=2.6 Score=25.75 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 568 HTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777788888888888888877765
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.74 E-value=64 Score=34.22 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------cCCCCChhchHHHHHHHHhcC-
Q 006437 236 IAEAYQLLGLMITLGTSLSVNAWTVLI--DG-FRRLRRLDMAGYLWEKMVQ-------NGCSPNVVTYTSLIKGFMEAK- 304 (645)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~- 304 (645)
...+.++++...+.|.. ........+ .+ +....|.+.|..+|+.... .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 34566666666655421 111111111 22 3355677777777777755 33 3334555666665543
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 006437 305 ----MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK-MGSYDDALDVYDGLLELKL 356 (645)
Q Consensus 305 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~ 356 (645)
+.+.|..++...-+.|.+ +....-..+..... ..+...|.++|....+.|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 556688888777776643 43333222222222 2356788888888777663
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.63 E-value=68 Score=34.49 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhc
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKL 198 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 198 (645)
.++--+.++|++++|.++..+.. ......+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34555667777777777773322 33334556666666554
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.97 E-value=13 Score=32.58 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHhcCChhH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID---ARIELDYHTSIRLTKFIFKFHSSSS 585 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 585 (645)
+.|+ ++|.+.|-.+...+.--++.....|..-|. ..|.+++.+++-++.+ .+-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 667777777776654445555555444444 6678888888877764 2335678888888888888888877
Q ss_pred HH
Q 006437 586 AV 587 (645)
Q Consensus 586 A~ 587 (645)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.74 E-value=32 Score=30.00 Aligned_cols=91 Identities=7% Similarity=0.011 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR-----VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK 579 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (645)
..+...|++++|+.-++.... .|....+. -|.+.....|.+++|...++...+.+.. ......-.+++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 446677788888877777664 23222222 2344556778888888888776554432 4444555677888
Q ss_pred cCChhHHHHHHHHHHHCCCCC
Q 006437 580 FHSSSSAVNQLVEMCNLGLIP 600 (645)
Q Consensus 580 ~g~~~~A~~~~~~m~~~g~~p 600 (645)
.|+.++|..-|++....+-.|
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 888888888888888776333
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.59 E-value=52 Score=32.35 Aligned_cols=65 Identities=5% Similarity=-0.003 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP---NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-++.....|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777777777777777766532111 233333445555666777777777766655
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.09 E-value=1.1 Score=27.99 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=11.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 006437 573 LTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 573 l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.00 E-value=3.3 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444555555555555555555544
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.00 E-value=14 Score=36.68 Aligned_cols=134 Identities=12% Similarity=-0.098 Sum_probs=89.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437 434 LRGLCGARKIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR 512 (645)
Q Consensus 434 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 512 (645)
|.--...|++-.|-+-+....+..+ .|+... .....+...|+++.+...+...... +.....+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 4444567888877666666555543 344333 3344567789999999888765432 23356678888999899999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 006437 513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSI 571 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 571 (645)
+++|..+...|....+. ++.............|-++++...|+++...+.+-+....+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 99999999888865543 44444444445556788899999999887655443443333
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.86 E-value=4.3 Score=23.28 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 570 SIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 570 ~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+..+...+.+.|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444445555555555555555544
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.25 E-value=83 Score=33.81 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=71.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcc
Q 006437 126 LRIYWRGEMYGMVLEAFDEMGRFGFTP---NTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVS 202 (645)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 202 (645)
++.+.+.+.+++|+.+-+..... .+ -..+...++..+.-.|++++|-...-.|...+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 56677788888888877665432 33 34567778888888899999988888888888888888887777777665
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 203 NVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232 (645)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 232 (645)
....+ +.......+...|..++..+..
T Consensus 441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 44333 3332223456677777777766
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.01 E-value=30 Score=28.63 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
.++.+++..+++.+.-..|+ ....-..-.-.+...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 56666666666666554443 11222222334556677777777777766543
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.75 E-value=22 Score=26.93 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437 135 YGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK 214 (645)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 214 (645)
.++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+....||...|-++-.. +.|--++...-+..|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45566666665544311 222222333456678888888888888888888887776553 556666666666666665
Q ss_pred C
Q 006437 215 G 215 (645)
Q Consensus 215 ~ 215 (645)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.74 E-value=88 Score=33.75 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChH
Q 006437 64 LIALSFFIWCAKQRDYFH--DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQ-----TFLLFLRIYWRGEMYG 136 (645)
Q Consensus 64 ~~A~~~f~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~~ 136 (645)
..|++-++.+.+....+| .+.++-.+..++..-..+++.|...+++.....-.++-. .-..+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356777777665444333 345566667777754788999999988765543222221 1224456666665555
Q ss_pred HHHHHHHHHhhC----CCCCCHHhHHHH-HHHHHhcCCHhHHHHHHhhcC-----CCCh--hhHHHHHHHHH--hcCCcc
Q 006437 137 MVLEAFDEMGRF----GFTPNTFARNIV-MDVLFKIGRVDLGIKVLKETQ-----LPNF--LSFNIALCNLC--KLNDVS 202 (645)
Q Consensus 137 ~a~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~ll~~~~--~~g~~~ 202 (645)
|....++.++. +..+-...+..+ +..+...++...|.+.++.+. ..|. ..+-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88887776633 212223333333 333333478888888887664 2333 23334444433 456667
Q ss_pred hHHHHHHHHHHCCC---------CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006437 203 NVKDVIGMMVRKGF---------YPNVRMFEILLNCFC--KMGRIAEAYQLLGLMI 247 (645)
Q Consensus 203 ~a~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 247 (645)
++.+.++.+..... .|-..+|..+++.++ ..|+++.+...++.+.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776633211 234556777776665 4566666666655553
No 328
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.74 E-value=40 Score=29.89 Aligned_cols=155 Identities=16% Similarity=0.035 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-----hhHHHHHH
Q 006437 119 AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-----LSFNIALC 193 (645)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~ 193 (645)
++.||-+.-.+...|+++.|.+.|+...+.+..-+-...|.=|..| --|++..|.+-|-..-..|. ..|--+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4456666666666777777777777776654222222223222222 24666666665554432221 12222221
Q ss_pred HHHhcCCcchHHHHHH-HHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC------CcCHHhHHHHHHHH
Q 006437 194 NLCKLNDVSNVKDVIG-MMVRKGFYPNVRMFEILLNCFCK-MGRIAEAYQLLGLMITLGT------SLSVNAWTVLIDGF 265 (645)
Q Consensus 194 ~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~ 265 (645)
+.-++.+|..-+. +... .|..-|...|-.+.- .=..+ .+++.+....- +.=..+|-.+...+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2233444443332 2222 233333333222211 11111 12222221100 01135677777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006437 266 RRLRRLDMAGYLWEKMVQN 284 (645)
Q Consensus 266 ~~~~~~~~a~~~~~~m~~~ 284 (645)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.68 E-value=17 Score=31.94 Aligned_cols=73 Identities=11% Similarity=-0.094 Sum_probs=52.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC-------CCChhhHHHHHHHHHhcCCcch
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ-------LPNFLSFNIALCNLCKLNDVSN 203 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~ 203 (645)
+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+.. ..|+..+..|++.+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3355 678888888887776666666667666666 567777777776542 4667788888888888888887
Q ss_pred HH
Q 006437 204 VK 205 (645)
Q Consensus 204 a~ 205 (645)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 330
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.38 E-value=23 Score=29.24 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHhhcC---------CCChhhHHHHHHHHHhcCC-cchHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 158 NIVMDVLFKIGRVDLGIKVLKETQ---------LPNFLSFNIALCNLCKLND-VSNVKDVIGMMVRKGFYPNVRMFEILL 227 (645)
Q Consensus 158 ~~ll~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 227 (645)
|.++.-....+++.....+++.+. ..+..+|++++.+...... --.+..+|+.|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444544444455555444444432 1233456666665544333 224455666666655666666666666
Q ss_pred HHHHhc
Q 006437 228 NCFCKM 233 (645)
Q Consensus 228 ~~~~~~ 233 (645)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665544
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.21 E-value=2.9 Score=24.11 Aligned_cols=24 Identities=17% Similarity=-0.022 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
..+...|...|++++|...|++..
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444443
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.85 E-value=32 Score=35.45 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=76.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ 483 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 483 (645)
-.|+++.|..++-.+. ...-+.+..-+.+.|-.++|.++ ..+|+.. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r-----Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL-------STDPDQR-----FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc-------CCChhhh-----hhhhhhcCcHHHHHH
Confidence 3455655555443221 22233444445555555555443 2222221 233445667777766
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
+..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655432 555677777777777777777777666654 33455555555655554444444444332
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437 564 ELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592 (645)
Q Consensus 564 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 592 (645)
. |.-.-+|...|++++..+++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2222344555666666655544
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.57 E-value=14 Score=32.62 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
..++.+.+.+.+.+++...+.-++.++. +...-..++..++-.|++++|..-++-.-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3344455555666666665555555544 44444556666666666666665555443
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.07 E-value=68 Score=31.50 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP---DNYSFVGLLRGLCGARKIDEAINVYQGIVMN 456 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 456 (645)
...+|..+...+.+.|+++.|...+..+...+... +......-....-..|+..+|...++..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778888888888888888888877643211 2233334455566778888888888877763
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.89 E-value=20 Score=30.79 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC----CHHHHHH-------HHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437 513 TEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER----NIKMVKR-------LLQDVIDARIELDYHTSIRLTKFIFKF 580 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g----~~~~a~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (645)
+++|+.-|++.+. +.|+ ..++..+..+|...+ +..+|.+ .|++..+ .+|+-..|+.-++...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 4455555666666 6786 467878887776543 3334444 4444444 5678888887777663
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 006437 581 HSSSSAVNQLVEMCNLGLIPD 601 (645)
Q Consensus 581 g~~~~A~~~~~~m~~~g~~p~ 601 (645)
+|-++..++.+++..+.
T Consensus 125 ----kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ----THHHHHHHHHHSSS---
T ss_pred ----hhHHHHHHHHHHHhhhh
Confidence 46677777766655443
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.87 E-value=2.6 Score=22.77 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 006437 570 SIRLTKFIFKFHSSSSAVNQLV 591 (645)
Q Consensus 570 ~~~l~~~~~~~g~~~~A~~~~~ 591 (645)
...+...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666554
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.86 E-value=34 Score=32.22 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=54.1
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 006437 422 GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN---PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV 498 (645)
Q Consensus 422 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 498 (645)
|......+...++..-....+++.+...+-++...- ..++... ..+++.+ -.-++++++.++..-++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334444555555555455566666666655554331 0111111 1112222 2234556666666666666667777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+++.+|+.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666655543
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.74 E-value=67 Score=31.21 Aligned_cols=77 Identities=6% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHH
Q 006437 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE---GGRTEEAYILYS 521 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 521 (645)
.-..+++++++.++. +......++..+.+..+.+...+.+++++... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 334555555555442 44455555555555555555555555555543 2245555555544333 123445555444
Q ss_pred HH
Q 006437 522 QM 523 (645)
Q Consensus 522 ~m 523 (645)
+.
T Consensus 127 ~~ 128 (321)
T PF08424_consen 127 KC 128 (321)
T ss_pred HH
Confidence 43
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.92 E-value=61 Score=30.30 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 535 YRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 535 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
++...+.|...|.+.+|.++.++.+..++ .+...+-.|+..|...|+--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445566666666666666666665443 25566666666666666655555555554
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.77 E-value=84 Score=31.84 Aligned_cols=204 Identities=12% Similarity=0.114 Sum_probs=99.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--hHHHHHHHHHhcCCHhH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQT--FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTF--ARNIVMDVLFKIGRVDL 172 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~ 172 (645)
.|+.+.+..+ .+.|..|+... -.+.+..++..|+.+-+ +.+.+.|..|+.. ....-+...+..|+.+.
T Consensus 12 ~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 12 FGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred hCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 3665544444 34565554322 23445555666776533 4444555544422 11234556667888888
Q ss_pred HHHHHhhcCCCChh---hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 173 GIKVLKETQLPNFL---SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM--FEILLNCFCKMGRIAEAYQLLGLMI 247 (645)
Q Consensus 173 A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (645)
+..+++.....+.. .-...+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll---- 155 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI---- 155 (413)
T ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----
Confidence 88887764321110 011222333345554 45555666676654332 123455556677766544444
Q ss_pred HcCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc---hHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006437 248 TLGTSLS---VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT---YTSLIKGFMEAKMFSIAFSFLDMLESEGH 321 (645)
Q Consensus 248 ~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (645)
+.|..++ ..-.+.+ ...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|.
T Consensus 156 ~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 156 DHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred hcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 3443332 2222233 3344556654 3444555665554332 224444445556554 4444455666
Q ss_pred CCCH
Q 006437 322 APDL 325 (645)
Q Consensus 322 ~~~~ 325 (645)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 5553
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.72 E-value=1.9e+02 Score=35.87 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh
Q 006437 225 ILLNCFCKMGRIAEAYQLLGLMITLG--TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME 302 (645)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (645)
++..+-.+.+.+..|.-.++.-.... -......|-.+...|...+++|...-+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 34445556677777777777631110 011233444555588888888877666654221 122 2333445566
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCcccHHH
Q 006437 303 AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFC-SLLSTVCLSGRFSLLPK 381 (645)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~ 381 (645)
.|++..|...|+.+.+.+. +...+++-++......|.++.+.-..+..... ..+....++ .=+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7888888888888877632 23566777777777777777766655544432 222222222 22333355666665555
Q ss_pred HH
Q 006437 382 LV 383 (645)
Q Consensus 382 ~~ 383 (645)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 54
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.57 E-value=87 Score=31.89 Aligned_cols=179 Identities=12% Similarity=0.177 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
|....-+++..+..+-...-+..+..+|..-| -+...|..++++|... .-+.-..+|+++.+...+ |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445566677777777777777778887754 4667778888888777 556677778877777665 6666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPL--D---VVSYTVAIRGLLEGGRTEEAYILYSQMKH-IAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~ 544 (645)
.|.+ ++.+.+...|.++...=++. + ...|..+.... ..+.+....+..++.. .|..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6666 77778888887776542221 1 22455544321 3456666777666653 3433445666667777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI 577 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (645)
..++++|++++..+.+.+-+ |...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 88899999988888776544 555555555544
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.47 E-value=57 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=21.8
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHHCCCCCChhhhHHHhhh
Q 006437 572 RLTKFIFKFHSSSSAVNQLVE----MCNLGLIPDEMWRKLGLLS 611 (645)
Q Consensus 572 ~l~~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~w~~~~~L~ 611 (645)
.++.++.+.|++.+|+.++.. ++..+-+|+-+ .+++|.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li--~vhllE 171 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI--TVHLLE 171 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee--ehhhhh
Confidence 455667777777777765443 34344455544 455554
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.41 E-value=14 Score=35.01 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006437 401 YFCKAGFPNQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQG 452 (645)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 452 (645)
-|.++|.+++|+..|..-... .| +.+++..-..+|.+..++..|..=.+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 366777777777777655543 33 556666666666666666655544433
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.24 E-value=33 Score=31.79 Aligned_cols=86 Identities=6% Similarity=-0.003 Sum_probs=48.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDK--GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE- 474 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 474 (645)
=|.+++..+++.+++...-+--+. .++|.. ...-|-.|.+.+.+..+.++-.......-+-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367777777777776544333321 233332 333344466777777777776666655333344446665555543
Q ss_pred ----cCCHHHHHHHH
Q 006437 475 ----AGRCHKAIQLF 485 (645)
Q Consensus 475 ----~g~~~~a~~~~ 485 (645)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777665
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.79 E-value=54 Score=28.64 Aligned_cols=114 Identities=13% Similarity=0.106 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-----HHHHHHHhcCCHHHHH
Q 006437 445 EAINVYQGIVMNNPAVNAHVHT--AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYT-----VAIRGLLEGGRTEEAY 517 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~ 517 (645)
+.....+.+...+....-..+. .+...+..++++++|...++...... -| ..+. .|.+...+.|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--~D-e~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT--KD-ENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc--hh-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444445555444332222222 24566778888888888888776431 12 2222 3445566788888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.+++...+.+. .+.....-.+.+...|+-++|+.-|++.++.+.
T Consensus 147 ~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 88887765432 333444556788888999999999988887753
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.79 E-value=8.2 Score=22.13 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 568 HTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677777777888888877777653
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.25 E-value=11 Score=23.66 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006437 226 LLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555554443
No 349
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.55 E-value=75 Score=28.33 Aligned_cols=164 Identities=17% Similarity=0.193 Sum_probs=92.0
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCC-CcH
Q 006437 387 EVEAD-LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR--GLCGARKIDEAINVYQGIVMNNPA-VNA 462 (645)
Q Consensus 387 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 462 (645)
.+.|+ +..||-+--.+...|+++.|.+.|+...+.. |. .-|..+-+ ++.--|++..|.+=+...-...++ |-.
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 34554 4567777777888999999999999888753 22 12322222 233468888888777777666543 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------HHH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFR-RAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-------AYT 534 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~ 534 (645)
..|--+. ...-++.+|..-+. +... .|..-|...|-.|.- |+.. ...+++++... -.-+ ..|
T Consensus 170 ~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEt 239 (297)
T COG4785 170 SLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTET 239 (297)
T ss_pred HHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHH
Confidence 2222222 22335556654433 3322 244555554444332 1111 12233333321 1111 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 535 YRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 535 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
|-.+.+-+...|+.++|..+|+..+..++
T Consensus 240 yFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 240 YFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 77788888888899999888888776543
No 350
>PF15469 Sec5: Exocyst complex component Sec5
Probab=71.26 E-value=70 Score=27.90 Aligned_cols=116 Identities=14% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhc
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP--NAYTYRVMLLSFCKE 545 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~ 545 (645)
++..-.+...+..+..++++.. -....-.-+.-+.+.|+++.++..|.+....--.. ....+..+.
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~------flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~------ 130 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNR------FLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVW------ 130 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH------
Confidence 3333344444555555555433 12223345566777888888888888776421011 222332222
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhhHHH
Q 006437 546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEMWRKLG 608 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~w~~~~ 608 (645)
+++..+.+.+.+ ..|..|... ....++..++++.+.+.|..+|++|.++.
T Consensus 131 ---~eve~ii~~~r~-------~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 131 ---SEVEKIIEEFRE-------KLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred ---HHHHHHHHHHHH-------HHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 222222222211 111111111 14566777888888888898899987653
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.78 E-value=78 Score=28.26 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP----NAYTYRVMLL 540 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~ 540 (645)
.+..++.+.+.+.+.+++...++-++.+ |-|...-..++..|+-.|++++|..-++-.-. +.| -..+|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 3445667788899999999998887765 44677778899999999999999887776655 344 3556666665
Q ss_pred H
Q 006437 541 S 541 (645)
Q Consensus 541 ~ 541 (645)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.65 E-value=56 Score=26.57 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 530 PNAYTYRVMLLSFCKER---NIKMVKRLLQDVID-ARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 530 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
++..+-..+.+++.+.. +.++.+.+++.+.+ ..+.-+....-.|.-++++.++++.++++++.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444455554433 34445555555554 1111122333344445555666666666665555
No 353
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.22 E-value=4.9 Score=22.81 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.1
Q ss_pred HHHHHH
Q 006437 478 CHKAIQ 483 (645)
Q Consensus 478 ~~~a~~ 483 (645)
+++|.+
T Consensus 16 ~~~A~~ 21 (33)
T PF13174_consen 16 YDEAIE 21 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.70 E-value=45 Score=25.38 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 512 RTEEAYILYSQMKHIAVPPNAYTYRVM--LLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
..++|..+.+-+...+ +..-...| +..+...|+|++|..+.+.. ..||...|-.| +-.+.|-.+.+..-
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHH
Confidence 4566666666655422 21222222 33445667777777666544 45666666555 33456666666666
Q ss_pred HHHHHHCC
Q 006437 590 LVEMCNLG 597 (645)
Q Consensus 590 ~~~m~~~g 597 (645)
+.+|..+|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 66666554
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.36 E-value=68 Score=29.82 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=23.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 192 LCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMI 247 (645)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (645)
|.+++..+++.+++...-+.-+.--+.-......-|-.|.+.++...+.++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45555555555555444333221111112223333334455555555555544444
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.21 E-value=57 Score=27.06 Aligned_cols=89 Identities=8% Similarity=0.088 Sum_probs=68.2
Q ss_pred CCCCCH--HHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCC
Q 006437 78 DYFHDV--QSFDHMISVVTRLTGRFETVRGIVGELARVGC-----VIKAQTFLLFLRIYWRGEM-YGMVLEAFDEMGRFG 149 (645)
Q Consensus 78 ~~~~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~ 149 (645)
...++. ...|.++.-++. .+++...+.+++.+..... ..+.+.|..++++...... --.+..+|..+.+.+
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~-~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLAS-YQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred ccChhHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 444443 345778877777 7899999999998854321 3466789999999977665 556788999999988
Q ss_pred CCCCHHhHHHHHHHHHhc
Q 006437 150 FTPNTFARNIVMDVLFKI 167 (645)
Q Consensus 150 ~~~~~~~~~~ll~~~~~~ 167 (645)
.+.++.-|..++.++.+-
T Consensus 111 ~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 899999999999988764
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.39 E-value=28 Score=27.71 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 006437 101 ETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMD 162 (645)
Q Consensus 101 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (645)
-+..+-+..+....+.|++......+++|.+.+|+..|+++|+-+... +.+....|-.+++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 355566667777788899999999999999999999999999988732 2233335555543
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.20 E-value=10 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHHHH
Q 006437 543 CKERNIKMVKRLLQDV 558 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~ 558 (645)
.+.|++++|.+.|+++
T Consensus 11 ~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 3333333333333333
No 359
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.51 E-value=58 Score=29.36 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL 164 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 164 (645)
.|++.....+++.|. .+++++|.+++.++-+.|+.|.... +.+.++.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 577777777777664 4577888888888888887765432 3344443
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.13 E-value=57 Score=25.24 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437 133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV 212 (645)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 212 (645)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-++-. .+.|--+++...+..+-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777776542 222232333444566777777744444455666666665544 35666666666666665
Q ss_pred HCC
Q 006437 213 RKG 215 (645)
Q Consensus 213 ~~~ 215 (645)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 544
No 361
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.80 E-value=1.8e+02 Score=30.99 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 006437 78 DYFHDVQSFDHMISVVTRLTGRFETVRGIVGEL 110 (645)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 110 (645)
+..+++.-|+.+.....+ |.++.|..+++..
T Consensus 144 p~~~~p~FW~~v~~lvlr--G~~~~a~~lL~~~ 174 (566)
T PF07575_consen 144 PYEHDPDFWDYVQRLVLR--GLFDQARQLLRLH 174 (566)
T ss_dssp SCSGSHHHHHHHHHHHHT--T-HHHHHHHH-TT
T ss_pred CCccchhHHHHHHHHHHc--CCHHHHHHHHHhc
Confidence 444557778765555555 9999999988443
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.00 E-value=12 Score=20.28 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m 523 (645)
+...+...|++++|...++..
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333334444444444444433
No 363
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.80 E-value=1.9e+02 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHhhcC
Q 006437 154 TFARNIVMDVLFKIGRVDLGIKVLKETQ 181 (645)
Q Consensus 154 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 181 (645)
+..|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 56776 5666777788888888885443
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.72 E-value=87 Score=28.21 Aligned_cols=67 Identities=1% Similarity=-0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHHHCCCCc-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006437 534 TYRVMLLSFCKERNIKM-------VKRLLQDVIDARIEL-----DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIP 600 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 600 (645)
.+--+.+.|...|+.+. |.+.|++..+..-.| +....-.++....+.|+.++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 44455666666666433 444455444322111 13344456667777888888888888887654433
No 365
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.43 E-value=1.5e+02 Score=29.60 Aligned_cols=336 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---
Q 006437 158 NIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG--- 234 (645)
Q Consensus 158 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--- 234 (645)
|-++.-|...|+..+|.+..+++.. +.+.-...-+++...+.-..|..+.-.+...+...+...-+.+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHH
Q 006437 235 -----RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIA 309 (645)
Q Consensus 235 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (645)
+...|...|+.+....+.-+--.-+++-..-...|+.+....+=+.+.. +|+-|...|+..+.
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~------------IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTP------------IIQEYFLSGDTPEV 364 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHH------------HHHHHHhcCChHHH
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc------------
Q 006437 310 FSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS------------ 377 (645)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~------------ 377 (645)
.+.++.+-.-...|-...+..-+..=.+...-+.|-.++..+--. +-++...-+.....+-...+..
T Consensus 365 i~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~elal 443 (645)
T KOG0403|consen 365 IRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQELAL 443 (645)
T ss_pred HHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHHHH
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh---------------hHHHHHHHHHcCC
Q 006437 378 -LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY---------------SFVGLLRGLCGAR 441 (645)
Q Consensus 378 -~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------------~~~~ll~~~~~~~ 441 (645)
.|+.+....-...+...+..-+..-......-+.-+.+-.|...|-+.... -...|+.-|...|
T Consensus 444 FlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~G 523 (645)
T KOG0403|consen 444 FLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSG 523 (645)
T ss_pred HHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhcc
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR 512 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 512 (645)
++.+|.+.++++---.+. ...++.+++.+..+.|+-...+.+++..-.. ...|-+.|-.+|.+..+
T Consensus 524 disEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 524 DISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYD 589 (645)
T ss_pred chHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhc
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.45 E-value=24 Score=25.47 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPP-N-AYTYRVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~ 554 (645)
...+.++|+..|+...+.-..| + -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655432222 1 22455556666666666655544
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.44 E-value=40 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
.+-++.+...++.|++.+-...++++.+.+|+..|.++|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444555566666666666666666666666666666553
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.42 E-value=2.2e+02 Score=30.96 Aligned_cols=398 Identities=7% Similarity=-0.092 Sum_probs=186.9
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006437 155 FARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234 (645)
Q Consensus 155 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 234 (645)
..-...+..+.+.+++..... |..-.+.+...-.....+....|+.++|......+=..|. ..+..+..++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 334445556666777777776 3322334444445555666667776666666655544432 23334455555444443
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-chHHHHHHHHhcCChhHHHHHH
Q 006437 235 RIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV-TYTSLIKGFMEAKMFSIAFSFL 313 (645)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 313 (645)
.+... ..+. -+......|+...|..+...+. ++.. ....++..+ .+...+..++
T Consensus 178 ~lt~~----------------d~w~-R~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~---~~p~~~~~~~ 232 (644)
T PRK11619 178 KQDPL----------------AYLE-RIRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQ---NDPNTVETFA 232 (644)
T ss_pred CCCHH----------------HHHH-HHHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHH---HCHHHHHHHh
Confidence 32221 1111 1222334445555544444331 1111 111222221 1222222221
Q ss_pred HHHHhCCCCCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH--hhHHHHHHHHHhcCCcccHHHHHhcCC
Q 006437 314 DMLESEGHAPDLVFHN---VLIDCLSKMGSYDDALDVYDGLLELK-LVPDS--YTFCSLLSTVCLSGRFSLLPKLVCGLE 387 (645)
Q Consensus 314 ~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (645)
... .++...-. ..+.-+ ...+.+.|..++..+.... ..+.. .+...+.......+..+.+...+....
T Consensus 233 ~~~-----~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 233 RTT-----GPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hcc-----CCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 111 11111111 111112 2345567777776654322 22211 122222222222222444555553321
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 006437 388 -VEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT 466 (645)
Q Consensus 388 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (645)
...+......-+..-...++++.+...+..|.... .-...-.--+..++...|+.++|..+|+.+... .+ .|.
T Consensus 307 ~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG 380 (644)
T PRK11619 307 MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYP 380 (644)
T ss_pred cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHH
Confidence 22244444444555558899999988888886532 224445556777777789999999999987432 12 222
Q ss_pred HHHHHHHhcCCHHHH-HH---HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006437 467 AIVDRLIEAGRCHKA-IQ---LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSF 542 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a-~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 542 (645)
.+... +.|..-.- .. .-... +..+ .--.-+..+...|+...|...+..+.+. .+......+....
T Consensus 381 ~LAa~--~Lg~~~~~~~~~~~~~~~~----~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A 449 (644)
T PRK11619 381 MVAAQ--RLGEEYPLKIDKAPKPDSA----LTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYA 449 (644)
T ss_pred HHHHH--HcCCCCCCCCCCCCchhhh----hccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 22211 11211000 00 00000 0000 0112234556778888998888888763 3445555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 543 CKERNIKMVKRLLQDVIDAR---IELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
...|.++.+..........+ .. =+..|...+..+.+.-.++.++-.---..++++.|+.+
T Consensus 450 ~~~g~~~~ai~~~~~~~~~~~~~~r-fp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 450 FNQQWWDLSVQATIAGKLWDHLEER-FPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHCCCHHHHHHHHhhchhHHHHHHh-CCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 67788887776654332210 00 01235556666666666666554434444566777654
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.00 E-value=25 Score=25.41 Aligned_cols=50 Identities=4% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHH
Q 006437 539 LLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 539 l~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
+..| ...+.++|+..|+.+.+.-..+. -.++..|+.+|+..|++++++++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 67788999999999987655432 34567788899999999998875
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.08 E-value=1.4e+02 Score=28.42 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNA---YTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
|.-+..+.|+..+|.+.++.+.+. .|=. .+...|+.+|.....+.+...++.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444667777777777765542 2311 233455666665555555555554443
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.95 E-value=2.3e+02 Score=30.76 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHhcCCHhHHHHHHhhcCC--C---ChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 161 MDVLFKIGRVDLGIKVLKETQL--P---NFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
++.+.+.+.+++|+.+.+.... + -...+...+..+...|++++|-...-.|... +..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 4556677778888887776541 2 1234666777777778887777777666543 34444444444444444
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh
Q 006437 236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRR 267 (645)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (645)
..... .-+.......+..+|..++..+..
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 33322 222222222456677777777666
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.73 E-value=1.2e+02 Score=27.55 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVV-SYTVAIRGLLEGGRTEEAY 517 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 517 (645)
....++.|...|.+.+..++.+ ..-|+.=+.++.+..+++.+..--.+.++. .||.+ ..-.+..+......+++|+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 3344455555444444333221 122233333444444444444444443332 23322 2222223333444445555
Q ss_pred HHHHHH
Q 006437 518 ILYSQM 523 (645)
Q Consensus 518 ~~~~~m 523 (645)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 444443
No 373
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.01 E-value=1.5e+02 Score=28.01 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHH-HHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437 337 KMGSYDDALDVYD-GLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV 412 (645)
Q Consensus 337 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (645)
+...+++.....+ +|++.+ -|+..+...+-.+......|..-.++... ..-...-.|..++.+++..|+.+-.+
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~-qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAE-QALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHH-HHHHHHHhhhHHHHHHhcCChHHHHH
Confidence 3344555554443 444444 34444333333333333333322222211 01123446888888888888766543
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.58 E-value=42 Score=29.65 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=16.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 564 ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 564 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.|++.+|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.11 E-value=85 Score=25.37 Aligned_cols=43 Identities=9% Similarity=-0.107 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437 550 MVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVE 592 (645)
Q Consensus 550 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 592 (645)
.+.++|+.|...++-- -+..|......+.+.|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666544432 355666666666666777766666654
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.95 E-value=1.7e+02 Score=27.86 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=109.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cC
Q 006437 405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AG 476 (645)
Q Consensus 405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 476 (645)
.+++..+...+......+. ......+...+.. ..+...|.+++......+.. .....|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 4455666666666555332 1233333333332 34577788888866665532 233335555554 34
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----C---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 006437 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG----G---RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----E 545 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~ 545 (645)
+..+|...++++.+.|..+-..+...+...|..- + +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 7888888999888887433222244444444432 1 3347888888888766 44444445555533 3
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHHHHCCCCCChh
Q 006437 546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH---------------SSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.+.++|..+|++.-+.|. ......+. .+...| +...|...+......|......
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 478899999999988775 33333333 444444 6677888888887776655544
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.05 E-value=2.2e+02 Score=28.87 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=8.3
Q ss_pred HHHHHhcCCHhHHHHHHhh
Q 006437 161 MDVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~ 179 (645)
+...+..|+.+-+.-+++.
T Consensus 39 L~~A~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMKH 57 (413)
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344444555444444443
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.43 E-value=1.7e+02 Score=27.54 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=26.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 298 KGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGL 351 (645)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (645)
..|..+|.+.+|.++.+....-. +.+...+-.++..++..|+--.+.+-++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555555555555555554432 223444445555555555554554444444
No 379
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.61 E-value=5e+02 Score=32.64 Aligned_cols=316 Identities=11% Similarity=0.052 Sum_probs=162.5
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcC----CCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQ----LPN--FLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 232 (645)
.|..+-.+++.+.+|.-.+++-. +.+ ..-|-.+...|...+++++...+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 44456667888999999998832 111 12344555588899999988887764211 122 2334556677
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHH-HHHHHHhcCChhHHHH
Q 006437 233 MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTS-LIKGFMEAKMFSIAFS 311 (645)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~ 311 (645)
.|+++.|...|+.+.+.+ ++...+++-++..-...|.++.+.-..+-...+. .+....+++ =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999864 3346677777777777788887777665555431 222223332 2334455666766666
Q ss_pred HHHHHHhCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHH--------CCCCCC-HhhHHHHHHHHHhcCCccc
Q 006437 312 FLDMLESEGHAPDLVFHNVL--IDCLSKMG--SYDDALDVYDGLLE--------LKLVPD-SYTFCSLLSTVCLSGRFSL 378 (645)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l--l~~~~~~~--~~~~a~~~~~~~~~--------~~~~~~-~~~~~~ll~~~~~~~~~~~ 378 (645)
.+. .. +..+|... .....+.. +.-.-.+..+.+++ .+..-+ ...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 554 11 22223222 22222211 11111122222221 111111 1334444443332221111
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCC-----CHhhHHHHHHHHHcCCCHHHHHHH
Q 006437 379 LPKLVCG---LEVEADLVVYNALLSYFCKAGFPNQAVKLYN-TMLDKGFTP-----DNYSFVGLLRGLCGARKIDEAINV 449 (645)
Q Consensus 379 a~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~ 449 (645)
...+... ....-+..-|..-+..-....+..+-+--++ .+......| -..+|....+.+..+|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111100 0001111122222211111111111111111 111111111 235677777777779999999887
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 450 YQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
+-...+.+ -+..+--.+......|+...|+.++++.++..
T Consensus 1693 ll~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77666655 33455667778889999999999999888664
No 380
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.61 E-value=54 Score=21.02 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVIDARIELDYHTSIRL 573 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 573 (645)
.|-.+++...+++|.+.|+..+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444445555444444444444433
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.20 E-value=44 Score=21.42 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=17.1
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILL 227 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 227 (645)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555566665555555555555444
No 382
>PRK10941 hypothetical protein; Provisional
Probab=53.61 E-value=2e+02 Score=27.08 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+.+-.+|.+.++++.|+++.+.+.. +.| ++.-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444556666666666666666665 344 344444455556666666666666666554
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.92 E-value=57 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006437 504 IRGLLEGGRTEEAYILYSQMKHIAVPPNA 532 (645)
Q Consensus 504 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 532 (645)
.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 3345555555555555555555 44543
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.59 E-value=76 Score=29.40 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID----AR-IELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
....+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+.=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455666677777777777776642 11 1223445556666667777777666654444
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.27 E-value=2e+02 Score=26.67 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC----c-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 224 EILLNCFCKMGRIAEAYQLLGLMITLGTS----L-------SVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
..|...|...+++.+..+++.++....-. . =...|..=|..|....+-.....+|++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34555566666666666666666532110 0 12345555666666666555555665544
No 386
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.87 E-value=2.8e+02 Score=28.32 Aligned_cols=110 Identities=10% Similarity=0.017 Sum_probs=70.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CC--CC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHh-------hCCCCCCHH-
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVE---KY--PL---DVVSYTVAIRGLLEGGRTEEAYILYSQMK-------HIAVPPNAY- 533 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-------~~~~~p~~~- 533 (645)
..+.-.|++.+|.+++...--. |. .| .-..||.|.-.+.+.|.+.-+..+|.+.. ..|++|...
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455678899998887654222 21 11 12335667666677788777777777765 346555321
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437 534 ---------TYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF 580 (645)
Q Consensus 534 ---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (645)
......-.|...|+.-.|.+.|.+..+- +.-++..|-.|.++|..+
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2223344567889999999998887753 445788999999888754
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.56 E-value=82 Score=32.61 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 554 (645)
.|+...|...+..+....-.-.-+..-.|...+.+.|...+|..++.+.+... ...+-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 56777777766665543211123344455566666677777777777766543 44566777777888888888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHH
Q 006437 555 LQDVIDARIELDYHTSIRLT 574 (645)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~ 574 (645)
|+.+.+...+ ++..-+.|.
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHH
Confidence 8877765544 444444433
No 388
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.55 E-value=1e+02 Score=22.80 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 530 PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
|+..+|..-++.-..... ++. ++|+-....|+..|+..|..+++.+.-.=-++...++++.|...
T Consensus 8 ~~~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA-EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred ChHHHHHHHHHHHhccCH-HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 344555554443333322 222 67777778888888888888888877777777777888887643
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.32 E-value=2.1e+02 Score=26.48 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCcchHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CcCHHhHHHHHHHHHhcCC
Q 006437 199 NDVSNVKDVIGMMVRKGFYPN---VRMFEILLNCFCKMGRIAEAYQLLGLMITL---GT--SLSVNAWTVLIDGFRRLRR 270 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~ 270 (645)
.++++|+.-|++..+..-.-. -.....++....+.+++++....+.++... .+ .-+..+.|++++.-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355566666665554321111 123444566666777777777766666421 11 1234456677766666666
Q ss_pred HHHHHHHHHHHHHc-CCCCCh----hchHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------CCHhhHHHHHHH
Q 006437 271 LDMAGYLWEKMVQN-GCSPNV----VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHA-----------PDLVFHNVLIDC 334 (645)
Q Consensus 271 ~~~a~~~~~~m~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ll~~ 334 (645)
.+-..++|+.-.+. .-..+. .|-+.+-..|...+.+.+..++++++...--. .-...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66555555443221 001122 23345667777778888888887777543110 012456666777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006437 335 LSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~ 353 (645)
|....+-.+-..+|++...
T Consensus 201 YT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 7777777777777776654
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.09 E-value=69 Score=21.94 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006437 261 LIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 261 li~~~~~~~~~~~a~~~~~~m~ 282 (645)
+|.++...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444455555544444443
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.57 E-value=1.1e+02 Score=22.71 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHh
Q 006437 133 EMYGMVLEAFDEMG 146 (645)
Q Consensus 133 ~~~~~a~~~~~~~~ 146 (645)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.38 E-value=60 Score=22.23 Aligned_cols=44 Identities=9% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+...++++.+... .-|....-.++.+|...|++++|.++++++.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444331 1144445566677777777777777777664
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.16 E-value=2.4e+02 Score=26.41 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 153 NTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232 (645)
Q Consensus 153 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 232 (645)
++.....+...|.+.|++.+|+.-|-....++...+-.++..+...|...++ |...-.. +--|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HHHHHH
Confidence 6778888889999999999988877654444443333333333333333322 2222222 333555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006437 233 MGRIAEAYQLLGLMITL 249 (645)
Q Consensus 233 ~~~~~~a~~~~~~~~~~ 249 (645)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67788888877766644
No 394
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.11 E-value=4.3e+02 Score=29.35 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCC-HHHHHHHHHHHHHcCChH
Q 006437 331 LIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEAD-LVVYNALLSYFCKAGFPN 409 (645)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 409 (645)
....+...|+.+....+-.-+.+ |..++.-+...+.+++|.+++... ..|. ..-|... .....+.
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~-~~~el~yk~ap~----Li~~~p~ 575 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ-RNPELFYKYAPE----LITHSPK 575 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHhhhH----HHhcCcH
Confidence 33444455555555554444333 344555556666666666666332 1111 1111111 1123344
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006437 410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA---RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRC 478 (645)
Q Consensus 410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 478 (645)
+....|..+.+. . +..-...++..+.+. .....+...++-....-...++..+|.++..|++..+-
T Consensus 576 ~tV~~wm~~~d~--~-~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 576 ETVSAWMAQKDL--D-PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred HHHHHHHHcccc--C-chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 444444443332 1 122222333333333 23344555555444444455778888888888765443
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.36 E-value=2.7e+02 Score=26.87 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006437 478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE------GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 551 (645)
++++..++++....+ .|-++.....|.++-. .-+|.....+|+-+.. +.|++++--.=.-+..+....+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 456677777776666 3666666666655432 1256777777777776 456554322223344455556667
Q ss_pred HHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 552 KRLLQDVIDA-RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 552 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
+.+.+.+.+. .++--...+..-...+.+.|+.++|..-|++....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 7777666543 22211122334456678888888888888888744
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.79 E-value=1.6e+02 Score=30.70 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHh
Q 006437 103 VRGIVGELARVGCV--IKAQTFLLFLRIYWRG-EMYGMVLEAFDEMGRFGFTP-NTFARNIVMDVLFKIGRVDLGIKVLK 178 (645)
Q Consensus 103 a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~ 178 (645)
..+....|...|.+ +..-.+..+...|.+. |+..+|...+....-..-+- .....-+|...+-+.|...+|--++.
T Consensus 194 ~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 194 SIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 44556666665543 3334456666777765 88888888887665321111 12344567777888888877777665
Q ss_pred hcC-CCChh--hHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 006437 179 ETQ-LPNFL--SFNIALCNLCKLNDVSNVKDVIGMMVRKG 215 (645)
Q Consensus 179 ~~~-~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 215 (645)
... ..+.+ .+-.+..+++..+++.....-|+...+.|
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 443 12222 14456666777777777777777766654
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.65 E-value=93 Score=31.09 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH-------HhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQ-------MKHIAVPP-----NAYTYRVMLLSFCKERNIKMVKRLLQDVI---- 559 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-------m~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---- 559 (645)
++..--.++.++....+..+-++..+. ..+.|-.| -..+...|++.++-.||+..|+++++.+.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred ---HCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 560 ---DARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 560 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..-+.-.+.+|-.++-+|...+++.+|.+.|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.44 E-value=1.1e+02 Score=25.48 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437 414 LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476 (645)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (645)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..+.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555666665543 23455556666566777777777777776665544443444444443
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.95 E-value=1.4e+02 Score=27.12 Aligned_cols=95 Identities=6% Similarity=-0.031 Sum_probs=51.6
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 006437 59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMV 138 (645)
Q Consensus 59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 138 (645)
-.++++.|++.+-. |...|+ .-..++.++.. .|+.+.|.++++.+.... .+......++.. ..++.+.+|
T Consensus 90 D~~~~~~A~~~L~~----ps~~~~--~~~~Il~~L~~-~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 90 DHGDFEEALELLSH----PSLIPW--FPDKILQALLR-RGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred ChHhHHHHHHHhCC----CCCCcc--cHHHHHHHHHH-CCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 34567777777622 221111 12246777777 688888877776653332 233333333333 556777777
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 006437 139 LEAFDEMGRFGFTPNTFARNIVMDVLFK 166 (645)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 166 (645)
...-+...+. .....+..++..+..
T Consensus 160 f~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 160 FSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 7766655542 123455566666554
No 400
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.91 E-value=5.2e+02 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 006437 441 RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG--RCHKAIQLFRRAIVE 491 (645)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 491 (645)
+++....+.+......... .......++.+|.+.+ ++++|+....++.+.
T Consensus 792 ~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444444444443332112 3334456777777777 777888777777654
No 401
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.83 E-value=3.2e+02 Score=27.22 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437 257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNG--CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES 318 (645)
Q Consensus 257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (645)
.+.-+.+.|..+|+++.|.+.|.+...-- ..-....|-.+|..-.-.++|..+..+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34445555555666666666655533210 011223334444444445555555555444443
No 402
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.70 E-value=2.4e+02 Score=25.73 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006437 474 EAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~ 491 (645)
..+++.+|..+|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.29 E-value=3.3e+02 Score=27.24 Aligned_cols=55 Identities=5% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 006437 436 GLCGARKIDEAINVYQGIVMNNPAVNAH--VHTAIVDRLI--EAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 491 (645)
.+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888887776 333333 3333444443 456677777777776543
No 404
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.08 E-value=2.6e+02 Score=25.99 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=105.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE-AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTE- 514 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 514 (645)
+.+......|.++.+..+..++. +-.+|.---..+.. ..++.+-++.++++.+.. +-|-..|..--......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCccc
Confidence 45667788888888888877654 33333221111111 234667777788877764 446666655444455566776
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCh-----hHHHH
Q 006437 515 EAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK-FHSS-----SSAVN 588 (645)
Q Consensus 515 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~-----~~A~~ 588 (645)
.=+++.+.|.... .-|.+.|..=-+++..-++++.=+.+..++++.++. +-..|+.-.-.... .|-. +.-+.
T Consensus 131 rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 6778888888743 557888888888888888899999999999887665 33444433222222 2222 22333
Q ss_pred HHHHHHHCCCCCChh--hhHHHhhhc
Q 006437 589 QLVEMCNLGLIPDEM--WRKLGLLSD 612 (645)
Q Consensus 589 ~~~~m~~~g~~p~~~--w~~~~~L~~ 612 (645)
+..++. -+.|+.. |+++.-+..
T Consensus 209 yt~~~I--~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 209 YTKDKI--LLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHH--HhCCCCccHHHHHHHHHH
Confidence 455555 4566655 998876663
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.72 E-value=59 Score=28.69 Aligned_cols=33 Identities=3% Similarity=-0.176 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF 148 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (645)
.|++..|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578888888888888888888888888877754
No 406
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.19 E-value=3e+02 Score=26.52 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCC----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHH
Q 006437 236 IAEAYQLLGLMITLGT----SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFS 311 (645)
Q Consensus 236 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (645)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5566777777665311 335555666666667777766655555555542 456666777777777777777777
Q ss_pred HHHHHHhCC
Q 006437 312 FLDMLESEG 320 (645)
Q Consensus 312 ~~~~~~~~~ 320 (645)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777777653
No 407
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.14 E-value=3e+02 Score=29.97 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 479 HKAIQLFRRAIV-EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 479 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
++....+....+ .|+..+......++... .|+...|+.+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 444444444433 35555555555555433 5777778777777654
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.07 E-value=5.1e+02 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 222 MFEILLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
-|..|+..|...|+.++|++++.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467777777888888888888777765
No 409
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.86 E-value=4.4e+02 Score=28.24 Aligned_cols=18 Identities=17% Similarity=-0.084 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCChhHHHH
Q 006437 294 TSLIKGFMEAKMFSIAFS 311 (645)
Q Consensus 294 ~~li~~~~~~~~~~~a~~ 311 (645)
...|+++.+.|.......
T Consensus 464 ~~~LkaLGN~g~~~~i~~ 481 (574)
T smart00638 464 QLYLKALGNAGHPSSIKV 481 (574)
T ss_pred eeHHHhhhccCChhHHHH
Confidence 445666666666554433
No 410
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.43 E-value=3.9e+02 Score=27.57 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Q 006437 396 NALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-----NYSFVGLLRGLCGARKIDEAINVYQGIVMN-NPAVNAHVHTAIV 469 (645)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 469 (645)
..+...|-+ ++.+.+..+|......-++-. ...|..+... -..+.+....+...+... |...-...+.-+-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 334333333 666667777766655422100 1122222221 134555555555555444 3333344444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
.-|....++.+|.+++..+.+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc
Confidence 55666666666666666666554
No 411
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.25 E-value=33 Score=32.76 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY-TYRVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 554 (645)
|.++.|.+.|...+..+ ++....|..-...+.+.+++..|++=+....+ +.||.. -|-.=-.+....|++++|...
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHHH
Confidence 33444444444444432 22333333333444444444455444444443 333321 222222233344555555555
Q ss_pred HHHHHHCCC
Q 006437 555 LQDVIDARI 563 (645)
Q Consensus 555 ~~~~~~~~~ 563 (645)
+....+.++
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 555544444
No 412
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.97 E-value=1.4e+02 Score=31.48 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHcCCCHH------HHHHHHHHHHHcCCCCcHHHHHHH
Q 006437 397 ALLSYFCKAGFPNQAVKLYNTMLDK--GFTPDNYSFVGLLRGLCGARKID------EAINVYQGIVMNNPAVNAHVHTAI 468 (645)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 468 (645)
.++.+|..+|++..+.++++.+... |-+.-...++..+..+.+.|.++ .|.+.++... ..-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888899999998888888764 22223445777777778877654 3344444333 44466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 006437 469 VDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~ 489 (645)
..+-...-.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 655444333333334444444
No 413
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.82 E-value=3.7e+02 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=18.9
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 490 VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 490 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+.|+..+......++.. ..|+...|..+++++..
T Consensus 193 ~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia 226 (509)
T PRK14958 193 EENVEFENAALDLLARA--ANGSVRDALSLLDQSIA 226 (509)
T ss_pred HcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHh
Confidence 34555555555444433 24677777777766544
No 414
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.73 E-value=3e+02 Score=31.52 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEM 145 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~ 145 (645)
....++.+...+++.+|..+.+.-
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHh
Confidence 445667777888888887766543
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.67 E-value=38 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.6
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCF 230 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (645)
..|.-.+|-.+|+.|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45777889999999999998887 466666543
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.87 E-value=1.5e+02 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=10.6
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 006437 575 KFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~m~ 594 (645)
......|++++|.+.+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555543
No 417
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.67 E-value=38 Score=33.96 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 006437 469 VDRLIEAGRCHKAIQLFRRAIVEKYPLDVV-SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKER 546 (645)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 546 (645)
++.+.+.+.++.|..++.++++.. ||.. .|..=..++.+.+++..|+.=+.+..+ ..|+ ...|.-=..+|.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 344555666777777777777654 4433 333333666677777777766666665 3343 223333334555555
Q ss_pred CHHHHHHHHHHHHH
Q 006437 547 NIKMVKRLLQDVID 560 (645)
Q Consensus 547 ~~~~a~~~~~~~~~ 560 (645)
.+.+|...|+....
T Consensus 87 ~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666665544
No 418
>PRK09857 putative transposase; Provisional
Probab=41.62 E-value=1.8e+02 Score=27.84 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..++.-....++.++..++++.+.+.. ........+++.-+.+.|.-++++++.++|...|+.++.+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I 276 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADI 276 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 334443345566555666666555442 2233344456666666666677888888888888877655
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.58 E-value=54 Score=30.88 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY 535 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 535 (645)
-|+..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3556666666777777777777777766654434443
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.52 E-value=1.6e+02 Score=24.58 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006437 105 GIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIG 168 (645)
Q Consensus 105 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 168 (645)
++.+.+.+.|..++.. -..+++.+...++.-.|.++|+++.+.+...+..+--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445556666655543 33556666666666777888888877665555544444455555555
No 421
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.25 E-value=4e+02 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=9.7
Q ss_pred CCcchHHHHHHHHHHCCCCCC
Q 006437 199 NDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~ 219 (645)
++.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444444433
No 422
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.15 E-value=1.3e+02 Score=22.87 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 549 KMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 549 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+...+.++++...+....+.....|.-.|.+.|+.+.|.+-|+.=+
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3344555666655555555566667777777777777777666544
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.58 E-value=2.9e+02 Score=25.29 Aligned_cols=118 Identities=10% Similarity=0.051 Sum_probs=71.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCHH
Q 006437 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSF-VGLLRGLCGARKIDEAINVYQGIVMNNPAVNA-HVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 479 (645)
|....+++.|+..|.+.+.. .|+..+| ..=+.++.+..+++.+..=-...++. .|+. .....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55566788888888777664 5666444 44555666777777776655555443 3333 23344566667778889
Q ss_pred HHHHHHHHHHH----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 480 KAIQLFRRAIV----EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 480 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
.|...+.+..+ ..+++-...+..|..+--+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99998888733 233444555666655443333444555555544
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.30 E-value=2.3e+02 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006437 470 DRLIEAGRCHKAIQLFRRAIV 490 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~ 490 (645)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555544
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.18 E-value=2.1e+02 Score=24.94 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=27.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER 546 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 546 (645)
.+..|.+.|.+++|.+++++... .|+......-+....+.+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 34568899999999999999875 455555555554444443
No 426
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.15 E-value=4e+02 Score=28.72 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=18.4
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 490 VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 490 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
+.|+..+......++. ...|+...|+.++++..
T Consensus 198 ~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i 230 (618)
T PRK14951 198 AENVPAEPQALRLLAR--AARGSMRDALSLTDQAI 230 (618)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 3455555555555544 23467777777666544
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.97 E-value=56 Score=30.81 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006437 389 EADLV-VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGL 433 (645)
Q Consensus 389 ~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 433 (645)
.||.. -|+..|..-.+.|++++|+.++++..+.|+.--..+|-..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34444 4678899999999999999999999998876555555443
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.57 E-value=2.1e+02 Score=23.44 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=40.1
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 495 LDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHIAVPP--NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 495 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
++..+--.+..++.+.. +..+.+.++++..+.. .| .......|.-++.+.|++++++++.+.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 34444445555666554 3455667777776522 33 33445556667777778888877777776643
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.15 E-value=3.7e+02 Score=26.10 Aligned_cols=97 Identities=8% Similarity=0.176 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 006437 391 DLVVYNALLSYFCKAGF------------PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP 458 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 458 (645)
|+.+|-.++..--..-. .+.-+.++++..+.. +-+......++..+.+..+.+...+.++.+....+
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 57777777754332211 345566777777663 23455566677777777888888888888888766
Q ss_pred CCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 006437 459 AVNAHVHTAIVDRLIE---AGRCHKAIQLFRRAI 489 (645)
Q Consensus 459 ~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 489 (645)
. +..+|...++.... .-.++....+|.+.+
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 5 67777776665544 234666666666554
No 430
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.15 E-value=3.1e+02 Score=25.18 Aligned_cols=58 Identities=9% Similarity=-0.057 Sum_probs=34.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG-ARKIDEAINVYQGIVM 455 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 455 (645)
++...-+.|+++++...++++.+.+...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 455667788888888888888887666666555555555522 2344445555554443
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.70 E-value=3.7e+02 Score=25.93 Aligned_cols=109 Identities=10% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHc-CC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437 443 IDEAINVYQGIVMN-NP---AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 443 ~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
.+.|.+.|+..... .. ..++.....+.....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45667777777664 22 456666667777777777766655555555543 366677788888888888888788
Q ss_pred HHHHHhhCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 006437 519 LYSQMKHIA-VPPNAYTYRVMLLSFCKERN--IKMVKRLLQ 556 (645)
Q Consensus 519 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~ 556 (645)
+++.....+ +++.. . ..++.++...+. .+.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888877643 44332 2 333334432332 355555544
No 432
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.56 E-value=4.5e+02 Score=26.94 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=64.2
Q ss_pred HcCCCHHHHHHHHHHHHH---cCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC------
Q 006437 438 CGARKIDEAINVYQGIVM---NNPAVN-----AHVHTAIVDRLIEAGRCHKAIQLFRRAIV-------EKYPLD------ 496 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~------ 496 (645)
...|++.+|.+++...-- .|...+ ...+|.+.-.+.+.|.+..+..+|.+.++ .|++|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 346788888777654311 121112 12234455555566666666666666553 354442
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 497 -----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 497 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
..+||. .-.|...|++-.|.+.|.+.... +..++..|--|..+|..
T Consensus 331 ~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 123443 33577889999999999987753 56788999999998853
No 433
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.29 E-value=1.1e+02 Score=21.29 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRG 132 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 132 (645)
|....++.++...++ ..-.++++..+.+....|. .+.++|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Ae-d~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAE-DHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 456677888888888 5667888888888888874 6777887777776543
No 434
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.25 E-value=4.5e+02 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 478 CHKAIQLFRRAIV-EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 478 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
.++..+.++++.+ .++..+......+.. ...|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 4445555555443 344444444444433 335777788877776543
No 435
>PRK10941 hypothetical protein; Provisional
Probab=38.21 E-value=3.5e+02 Score=25.48 Aligned_cols=76 Identities=13% Similarity=-0.022 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHH
Q 006437 466 TAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI-AVPPNAYTYRVMLLSF 542 (645)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~ 542 (645)
+.+-.+|.+.++++.|+++.+.+.... |.++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 445566778888888888888887764 445666666667788888888888877777652 1223444444444333
No 436
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.14 E-value=3.1e+02 Score=26.21 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
+....+.++.....+.+..+. ....-...+......|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444444444444444443 222333445555566777777776666554
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.02 E-value=71 Score=17.49 Aligned_cols=14 Identities=7% Similarity=0.501 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHH
Q 006437 547 NIKMVKRLLQDVID 560 (645)
Q Consensus 547 ~~~~a~~~~~~~~~ 560 (645)
+.+.|..+++++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555544
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.19 E-value=3.1e+02 Score=24.68 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 514 EEAYILYSQMKHIAVPP----NAYT-YRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p----~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
..|.+.|.+..+..-.| +..+ .-.+...+.+.|+.++|.++|.++...+-.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34555555554332222 2233 334445557788888888888888765433
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.87 E-value=31 Score=27.92 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 576 FIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 576 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.+.+.|.-.+|-.+|++|++.|-.||+-
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW 131 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDW 131 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccH
Confidence 3445678888999999999999888765
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.62 E-value=2.3e+02 Score=22.91 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437 119 AQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPN-TFARNIVMDVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 179 (645)
..-|..+=-.|+..- ..+.++|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 65 D~RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444433444332 378888888887666443 56677777778888888888888764
No 441
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.61 E-value=4.7e+02 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437 478 CHKAIQLFRRAI-VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526 (645)
Q Consensus 478 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 526 (645)
.++....+.... +.|+..+......++.. ..|+...|...++++...
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhc
Confidence 344455554433 34655555555555433 357777787777776543
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.53 E-value=1.8e+02 Score=21.67 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT 513 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 513 (645)
.|+.+.|.+++..+. +| +..|...+.++...|+-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 345555555555544 32 22344445555444443
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.18 E-value=1.8e+02 Score=21.57 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhc
Q 006437 140 EAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKET 180 (645)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 180 (645)
++|+-....|+..|+.+|..+++.+.-.=-.+...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555555555556666655555554444444444444443
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.01 E-value=4.6e+02 Score=26.21 Aligned_cols=172 Identities=12% Similarity=0.138 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------CCC
Q 006437 83 VQSFDHMISVVTRLTGRFETVRGIVGELARVGC--VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF---------GFT 151 (645)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~ 151 (645)
...+.-+..-|.. .|+++.|.+.|.+.+.--. .-....|..+|..-.-.|++......-.+..+. .++
T Consensus 150 Rra~~Dl~dhy~~-cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLD-CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHH-hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4556677777777 7889999999888544221 224456667777767777777666666555433 245
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHhhc----------CCC-ChhhHHHHHHHHHhcCCcchHHH-----HHHHHHHCC
Q 006437 152 PNTFARNIVMDVLFKIGRVDLGIKVLKET----------QLP-NFLSFNIALCNLCKLNDVSNVKD-----VIGMMVRKG 215 (645)
Q Consensus 152 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----------~~~-~~~~~~~ll~~~~~~g~~~~a~~-----~~~~m~~~~ 215 (645)
+...++..|.....+ ++..|.+.|-.. ..| |+.+|. .+.+++-.++-+--+. .|+...+
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle-- 303 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE-- 303 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh--
Confidence 667777777777665 666666655332 222 333333 2333332222211111 1222222
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCcCHHhHHHHHHH
Q 006437 216 FYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITL-----GTSLSVNAWTVLIDG 264 (645)
Q Consensus 216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~ 264 (645)
..+.....+.+.| .+++....++++++... -+.|.+.+.-.+|+-
T Consensus 304 --l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 304 --LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRN 353 (466)
T ss_pred --cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHH
Confidence 2333334344333 24677777777777643 234555555555543
No 445
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.71 E-value=4.5e+02 Score=26.06 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 006437 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFR-RLRRLDMAGYLWEKMV 282 (645)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 282 (645)
+..+.+.|.+..|.++.+.+.+.++.-|+..-..+|+.|+ +.++++-.+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4455566666666666666666554445555555555553 4555665555555543
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.51 E-value=2.4e+02 Score=26.86 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----------CCHHHH
Q 006437 412 VKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA----------GRCHKA 481 (645)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a 481 (645)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+.....+|+.+.. |..-+..++..||.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHH
Q 006437 482 IQLFR 486 (645)
Q Consensus 482 ~~~~~ 486 (645)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.71 E-value=2.2e+02 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 223 FEILLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 223 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
|..++..|...|..++|.+++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554443
No 448
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.57 E-value=3.2e+02 Score=26.11 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHh
Q 006437 260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLES 318 (645)
Q Consensus 260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (645)
.++..+.+.+++....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566666666666666664 233445567778889999999999888765
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.56 E-value=3.5e+02 Score=24.49 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL---DVVSY--TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTY 535 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 535 (645)
...-++.|+--|.-...+.+|-+.|..- .++.| |..++ ..-|....+.|+.++|++......-.-+..|...+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 3333444443343333344444444432 23333 23333 23455667778888887777766432233344333
Q ss_pred HHHHH----HHHhcCCHHHHHHHHHH
Q 006437 536 RVMLL----SFCKERNIKMVKRLLQD 557 (645)
Q Consensus 536 ~~ll~----~~~~~g~~~~a~~~~~~ 557 (645)
..|.. -..+.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322 12455666666665553
No 450
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.41 E-value=1.1e+02 Score=31.00 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHcCCCHHHHHHHHHHHHH
Q 006437 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFV-GLLRGLCGARKIDEAINVYQGIVM 455 (645)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 455 (645)
+.+.+.++.|..++.+.++. .|+-..|- .=..++.+.+++..|..=...+++
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444455555555555543 23322221 112344444444444444444433
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.28 E-value=26 Score=33.42 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
..|.+++|++.|....... +|....|..-..++.+.++...|++=+....+.+.+ ...-|-.-..+-...|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4578999999999998843 446667777788889999999999888888775544 23344444455666799999999
Q ss_pred HHHHHHHCCCCCChh
Q 006437 589 QLVEMCNLGLIPDEM 603 (645)
Q Consensus 589 ~~~~m~~~g~~p~~~ 603 (645)
.+....+.++.+...
T Consensus 204 dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 204 DLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHhccccHHHH
Confidence 999999988887655
No 452
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.41 E-value=99 Score=17.89 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006437 516 AYILYSQM 523 (645)
Q Consensus 516 A~~~~~~m 523 (645)
|..+|++.
T Consensus 6 AR~IyeR~ 13 (32)
T PF02184_consen 6 ARSIYERF 13 (32)
T ss_pred HHHHHHHH
Confidence 33333333
No 453
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.26 E-value=2.6e+02 Score=22.59 Aligned_cols=41 Identities=10% Similarity=-0.068 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 006437 551 VKRLLQDVIDARIELD-YHTSIRLTKFIFKFHSSSSAVNQLV 591 (645)
Q Consensus 551 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 591 (645)
..++|..|...++--. +..|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555432 4455666666667777777766664
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=7.4e+02 Score=27.72 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=54.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHH---------------hcCCHHHHHHHHHHHhhCCCCCC
Q 006437 473 IEAGRCHKAIQLFRRAIVEK------YPLDVVSYTVAIRGLL---------------EGGRTEEAYILYSQMKHIAVPPN 531 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~m~~~~~~p~ 531 (645)
...|++.+|.+.|+.++-.- -.-+..--..++..+. ..+..+++.++..-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 45788999998888876431 0112222233333221 12345555555555555556663
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 006437 532 --AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDY 567 (645)
Q Consensus 532 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 567 (645)
.-++.+.+..+.+.+++..|..+-.++++.+..|+.
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 335556677777777777777777777776666553
No 455
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.57 E-value=2.5e+02 Score=23.43 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437 513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER 546 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 546 (645)
.-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4455555555555443334444444444444444
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.12 E-value=2.9e+02 Score=25.56 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMKH----IA-VPPNAYTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344555566666666666666531 12 1123444555555556666666555443
No 457
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.72 E-value=8.4e+02 Score=27.99 Aligned_cols=247 Identities=12% Similarity=-0.012 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
+++.+-...+..+.+ .+. ..+...+..+.+ .++...-...+.++.+.+........+..+.. .+|..+-...
T Consensus 633 ~d~~VR~~Av~~L~~-~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 633 PDPGVRRTAVAVLTE-TTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCHHHHHHHHHHHhh-hcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 455666666666666 343 333344444433 23444444444444433221111122222222 2455555555
Q ss_pred HHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH-H
Q 006437 161 MDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAE-A 239 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a 239 (645)
+.++...+..+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchh
Confidence 55554433211 2233344445555555555555555443321 111211 2445555555555555544322 2
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006437 240 YQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE 319 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (645)
...+..+.+ .+|...-...+.++.+.|..+.+...+..+.+. ++...-...+.++...+.. ++...+-.+.+.
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D 849 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAAD-VAVPALVEALTD 849 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcccc-chHHHHHHHhcC
Confidence 233333332 345556666666666666554443333333332 3444444455555555442 333444443332
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 320 GHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 320 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (645)
++...-...+.++.+.+....+...+..+.+
T Consensus 850 ---~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 850 ---PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred ---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 3444444445555554222334444444433
No 458
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.56 E-value=8.4e+02 Score=27.97 Aligned_cols=255 Identities=11% Similarity=0.004 Sum_probs=113.9
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 006437 175 KVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLS 254 (645)
Q Consensus 175 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (645)
.+.+.+..+|...-...+..+.+.+..+ +...+....+. ++...-...+.++.+.+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 3334444555555555555555555433 33444344332 3433333444444433221111122222222 134
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006437 255 VNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDC 334 (645)
Q Consensus 255 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 334 (645)
..+-...+..+...+.-+ ...+.. ..+ .+|...-...+.++...+..+. + ..... .++...-.....+
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~---D~~~~VR~~aa~a 765 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAAT---DENREVRIAVAKG 765 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHhc---CCCHHHHHHHHHH
Confidence 444445555554432111 112222 222 2344444445555554433321 1 12222 2344444445555
Q ss_pred HHhcCCHHH-HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006437 335 LSKMGSYDD-ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVK 413 (645)
Q Consensus 335 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 413 (645)
+...+..+. +...+..+.+ .++..+-...+.++...|..+.+...+...-..++...-...+.++...+. +++..
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 555554332 2333334333 245666666667776666654432222221223455555556666666664 34555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006437 414 LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM 455 (645)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 455 (645)
.+..+.+ .|+...-...+.++.+......+...+....+
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555543 34555555666666665334455555555554
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.51 E-value=2.2e+02 Score=30.15 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=54.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHhhHHHH
Q 006437 295 SLIKGFMEAKMFSIAFSFLDMLESE--GHAPDLVFHNVLIDCLSKMGSYD------DALDVYDGLLELKLVPDSYTFCSL 366 (645)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 366 (645)
++..+|..+|++..+.++++..... |-+.=...||..|+...+.|.++ .+.+++++ ..+.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 7899999999999999999998765 33333457888889999999754 33333333 3366788888888
Q ss_pred HHHHHh
Q 006437 367 LSTVCL 372 (645)
Q Consensus 367 l~~~~~ 372 (645)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776543
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.33 E-value=2.7e+02 Score=23.89 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=16.3
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 234 (645)
.++.-.|.++++.+.+.+..++..|.-..|+.+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334445555555555444444444333344444433
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.31 E-value=1.6e+02 Score=32.43 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
...+|+++.|++.-+++ .+..+|..|.......|+.+-|+-.|++.+.
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34566777666655443 2566677777777777777777666666543
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.77 E-value=2.6e+02 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEMGR 147 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (645)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777665
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.71 E-value=2.5e+02 Score=21.51 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYR 536 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 536 (645)
|.-.|.+.|+.+.|.+-|+.=+. +-|.+.+|.
T Consensus 78 LGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 34445555555555555555444 445544443
No 464
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.69 E-value=6.5e+02 Score=26.40 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 479 HKAIQLFRRAI-VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 479 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
++....++... +.|+..+......++. ...|+...|...++++.
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai 234 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 34444444333 3344445555444443 23466777777766654
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.66 E-value=5.9e+02 Score=25.85 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=61.1
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006437 424 TPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVA 503 (645)
Q Consensus 424 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 503 (645)
..+......++..+ .|+...+..+++.+...+...+ .+...+++...... ...+...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~-~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAAR-YDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhc-cCCCccHHHHH
Confidence 34444444444432 6788888877777654321111 12222222221111 11112223334
Q ss_pred HHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCC
Q 006437 504 IRGLLE---GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN-----IKMVKRLLQDVIDARIE 564 (645)
Q Consensus 504 ~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 564 (645)
+.++.+ .++.+.|+..+..|.+.|..|....-..+..++...|. ...|...++.....|..
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 444443 46788888888888888877776555555555544442 22334444444455543
No 466
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=4.3e+02 Score=24.19 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=37.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH---HHH--HH-HhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHH
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVPPNAYTYRV---MLL--SF-CKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTK 575 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll~--~~-~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 575 (645)
-...+++.+|+.+|++.....+.-+.--|.. ++. .| .-..|.-.+...+++..+..+.. |..-+..|-+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~ 239 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKD 239 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 3467889999999999876544333222221 121 12 12255566667777777654433 3344444433
No 467
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=3e+02 Score=26.55 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-L--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVML 539 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 539 (645)
.|.-=.+-|.+..++..|...|.+-++.+.. | +.+.|+.-..+-...|++..|+.=....+. +.|+ ...|.-=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 4445577788888888888888887776532 2 356677666666677888888877777766 5664 33444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 006437 540 LSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~ 559 (645)
.++.....+++|..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55556666777776666553
No 468
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.94 E-value=1.4e+02 Score=26.21 Aligned_cols=64 Identities=6% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437 64 LIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY 129 (645)
Q Consensus 64 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 129 (645)
-++.++|..++++|+|.|=...-..+=.+.+- |-.-.-..+.+.+....+..+...|...+..+
T Consensus 15 ~E~mevfk~vPQ~PHF~pL~~~~e~~REg~A~--Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl 78 (190)
T PF05266_consen 15 IESMEVFKKVPQSPHFSPLQEFKEELREGMAV--GLMVTFANLAEKVKKLQIDDSRSSFESLMKTL 78 (190)
T ss_pred HHHHHHHHcCCCCCCChhhhcCcHHhhhHHHH--HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHH
Confidence 37899999999999987754433333333333 55556667777888877776777776655543
No 469
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.75 E-value=6.4e+02 Score=26.03 Aligned_cols=206 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCHHhHHH--HHHH-----HHhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHH
Q 006437 139 LEAFDEMGRFGFTPNTFARNI--VMDV-----LFKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVI 208 (645)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~--ll~~-----~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~ 208 (645)
.++++.+.+.|..++...... .+.. .+..|+.+-+.-+++... ..+....+.+..+.. ....-.+++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~---~~~~~~~iv 124 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS---KKSNSYSIV 124 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh---cccChHHHH
Q ss_pred HHHHHCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437 209 GMMVRKGFYPNVRMFE--ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAW--TVLIDGFRRLRRLDMAGYLWEKMVQN 284 (645)
Q Consensus 209 ~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~ 284 (645)
+.+.+.|..++..... +.+..++..|. .-.++.+.+.+.|..++.... .+.+...+..| -.++.+.+.+.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ 198 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDN 198 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHc
Q ss_pred CCCCChhch--------HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 285 GCSPNVVTY--------TSLIKGFMEAKM--FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 285 ~~~~~~~~~--------~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (645)
|..++.... ...+...+..|. .+-+.-+++.-..-+.. |....+.+..+..... .++++.+.+.
T Consensus 199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~-d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ 272 (480)
T PHA03100 199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIK-DVYGFTPLHYAVYNNN-----PEFVKYLLDL 272 (480)
T ss_pred CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCC-----HHHHHHHHHc
Q ss_pred CCCCC
Q 006437 355 KLVPD 359 (645)
Q Consensus 355 ~~~~~ 359 (645)
|..++
T Consensus 273 gad~n 277 (480)
T PHA03100 273 GANPN 277 (480)
T ss_pred CCCCC
No 470
>PRK09857 putative transposase; Provisional
Probab=29.69 E-value=4e+02 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVP 529 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~ 529 (645)
+.+.|.-+++.++.++|...|+.
T Consensus 250 L~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 250 LRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333334444444555444433
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.35 E-value=1.6e+02 Score=23.11 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006437 89 MISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMY 135 (645)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 135 (645)
++..+.. .+..-.|.++++.+.+.+..++..|....++.+...|-+
T Consensus 6 Il~~l~~-~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLE-SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHh-CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444 344556666666666665555666666666666555543
No 472
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.16 E-value=6e+02 Score=25.45 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChh--chHHHHHHHHh--cCChhHHHHHHHHHHhC
Q 006437 264 GFRRLRRLDMAGYLWEKMVQNGCSPNVV--TYTSLIKGFME--AKMFSIAFSFLDMLESE 319 (645)
Q Consensus 264 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~~~~~ 319 (645)
.....+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334677777777777777765 444443 33344444433 23556666666665543
No 473
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.11 E-value=1.4e+02 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006437 88 HMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM 134 (645)
Q Consensus 88 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 134 (645)
.++..+.. .+..-.|.++++.|.+.+...+..|....+..+...|-
T Consensus 12 ~Il~~l~~-~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKE-SPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHH-HSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHc-CCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34444555 34456666666666666655566665555555555553
No 474
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.39 E-value=8.8e+02 Score=27.16 Aligned_cols=358 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHhhcC--------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HhhHH
Q 006437 154 TFARNIVMDVLFKIGRVDLGIKVLKETQ--------LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN-VRMFE 224 (645)
Q Consensus 154 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 224 (645)
...-..|.+.+....+-...++-++... .++.+.|..+.. +++..-.+.+..++ .....
T Consensus 284 ~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFa------------eFL~~r~~~~~~~~~~~lH~ 351 (894)
T COG2909 284 SRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFA------------EFLRQRLQRELAARLKELHR 351 (894)
T ss_pred HHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHH------------HHHHhhhccccCCchhHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHH
Q 006437 225 ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGF----RRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300 (645)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (645)
.....+...|..++|.+-.-... |+..-..++.-+ ...+++.......+.+...-+..+....-.-+-..
T Consensus 352 ~Aa~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~ 425 (894)
T COG2909 352 AAAEWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL 425 (894)
T ss_pred HHHHHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 301 MEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK--------MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCL 372 (645)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 372 (645)
....++++|..++.++...-..|+...-..+...+.. .|+++.|.++-+..... +..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~------------- 491 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEA------------- 491 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccc-------------
Q ss_pred cCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHcCC--CHHH
Q 006437 373 SGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRG-----LCGAR--KIDE 445 (645)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~--~~~~ 445 (645)
...+..+.+..+..+..-.|++++|..+..+..+.--.-+...+...... +...| ...+
T Consensus 492 --------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 492 --------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred --------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHc-CCCCcH-----HHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 006437 446 AINVYQGIVMN-NPAVNA-----HVHTAIVDRLIE-AGRCHKAIQLFRRAIVEKYPLDVVSYT--VAIRGLLEGGRTEEA 516 (645)
Q Consensus 446 a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 516 (645)
....+...... ...... .++..+..++.+ .+...++..-++-.......|-...+. .|+......|+.++|
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Q 006437 517 YILYSQMKHIAVPPNAYTYRVMLLSFCKE------RNIKMVKRLLQD 557 (645)
Q Consensus 517 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~ 557 (645)
...++++......+....+..-.....+. |+...+.....+
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.95 E-value=3.6e+02 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=30.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 111 ARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 111 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
...|...+..-. .++..+...+..-.|.++++.+.+.+...+..+.-.-|+.+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 444554444333 4444444445555667777777666655555544445555555553
No 476
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.84 E-value=3.1e+02 Score=22.45 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 006437 120 QTFLLFLRIYWRGEMYGMVLEAFDEMGRFGF 150 (645)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 150 (645)
..+..++-.+...|+++.|+++.+.++++|.
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3455666666777777777777777777764
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.66 E-value=1.6e+02 Score=20.43 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
..++.+++.+++..-.++++..+.++...|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445555555555555555555555544
No 478
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.66 E-value=7.8e+02 Score=26.87 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 479 HKAIQLFRRAI-VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 479 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
++..+.+..+. +.|+..+......++.. ..|+...|+.+++++..
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 44444444433 33544455554444432 35777777777766543
No 479
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.58 E-value=4.7e+02 Score=23.74 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHhhH--HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 006437 389 EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTP---DNYSF--VGLLRGLCGARKIDEAINVYQGIVMN 456 (645)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~ 456 (645)
.+...-+|.|+--|.-...+.+|...|.. +.|+.| |..++ ..-|......|+++.|.+....+-..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Confidence 33334444544444444444444444432 233333 22222 23344455666666666666655433
No 480
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.41 E-value=8.9e+02 Score=26.89 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=23.6
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 234 (645)
+.++++.|+..+..|.+.|..|....-..++.+.-..|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 45677888888888888776665544444444443333
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.16 E-value=2.4e+02 Score=21.95 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcCCC
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQLP 183 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~~~ 183 (645)
.++.-|...|+.++|...++++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3444455555555555555554433
No 482
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.11 E-value=5.2e+02 Score=24.14 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=12.7
Q ss_pred CHhhHHHHHHHHHhcCCcccHHHHH
Q 006437 359 DSYTFCSLLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 359 ~~~~~~~ll~~~~~~~~~~~a~~~~ 383 (645)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4444555555556666655555554
No 483
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.85 E-value=5.3e+02 Score=24.10 Aligned_cols=157 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY-----DDALDVYDGLLELKLVPDSYTFCSLL 367 (645)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll 367 (645)
.+.++..+.+.+....|..+.+.+... +.=..+...++......... ......+....+ +--....|..++
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~~l~Iv 160 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPEYLEIV 160 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcchHHHH
Q ss_pred HHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHcCC
Q 006437 368 STVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD------NYSFVGLLRGLCGAR 441 (645)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~ 441 (645)
..|.|.-+...-..+|...+ .|. .++..|.+.|+.+.|-.++--+...+-... ......++......+
T Consensus 161 v~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 161 VNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 006437 442 KIDEAINVYQGIVMNNPA 459 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~ 459 (645)
+++.+.++.+-+...+..
T Consensus 235 ~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 235 DWDLCFELVRFLKALDPE 252 (258)
T ss_pred cHHHHHHHHHHHHHhCcc
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.74 E-value=5.9e+02 Score=24.62 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCChhhHHHHHH-HHHhcCCHHH
Q 006437 442 KIDEAINVYQGIVMN-NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIV----EKYPLDVVSYTVAIR-GLLEGGRTEE 515 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~g~~~~ 515 (645)
.+++-.+..+...+. |-.--...+......||+.|+-+.|.+.+++..+ .|.+.|+..+..=+. .|..+.-+.+
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~ 162 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTE 162 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHH
Confidence 344444445555444 2222344556677889999999998887766543 466666655443332 2333333455
Q ss_pred HHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 516 AYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
-++-.+.+.+.|..-+ ..+|..+- |....++.+|..+|-...
T Consensus 163 ~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 163 SIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 5555566666664433 23444332 334567788887776665
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.29 E-value=4.5e+02 Score=23.16 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006437 230 FCKMGRIAEAYQLLGLMI 247 (645)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~ 247 (645)
....|++++|..-++.+.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 344555666665555543
No 486
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.19 E-value=2.6e+02 Score=21.91 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006437 125 FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI 167 (645)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (645)
++..+.+....++|+++.+.|.+.| ..+...-+.|-..+.+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 4445566677888888888888888 66666666655555443
No 487
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.09 E-value=2.3e+02 Score=20.17 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006437 134 MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI 167 (645)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (645)
+.+.|..++.++.... ..++..||++.+.+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4456666666665432 55666777766666543
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.07 E-value=2e+02 Score=22.53 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=29.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 191 ALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555556666778888888777666666666556666666654
No 489
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.86 E-value=7.1e+02 Score=25.25 Aligned_cols=235 Identities=8% Similarity=-0.068 Sum_probs=110.5
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 90 ISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
|.++.. .| ..++..+....... ++...+.....++....+......+.+.+. .++..+.....+++...+.
T Consensus 45 LdgL~~-~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVL-AG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHH-hh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 445555 45 34555554444332 333444444444433322222222333222 3455566677777777766
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006437 170 VDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITL 249 (645)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (645)
......+..-...++.......+.++...+. .+...+....+ .+|...-...+.++...+..+..-. +..+..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~-L~~al~- 188 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSEST-LRLYLR- 188 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH-HHHHHc-
Confidence 6655555555555555555455555554332 23333333333 3455555566666666655433222 223322
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 006437 250 GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHN 329 (645)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (645)
..|..+-..-+.+....|. .+|...+...... ++....-.+...+... ..+++...+..+.+. +. +-.
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d---~~--vr~ 256 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA---AA--TRR 256 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcC---hh--hHH
Confidence 3455555556666666666 5555544442221 2222222222222222 233555555555443 11 444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006437 330 VLIDCLSKMGSYDDALDVYDGLL 352 (645)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~ 352 (645)
..+.++.+.|+...+.-+.+.|.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhc
Confidence 55566666666665555555443
No 490
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=25.76 E-value=36 Score=26.53 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=15.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006437 540 LSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~~ 560 (645)
..+...|+.-+|+++++++..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 456677888888888888774
No 491
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.76 E-value=7.7e+02 Score=25.62 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437 531 NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 531 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 565 (645)
+...+..++.+....+....|..+++++.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555566777777777766654
No 492
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.23 E-value=2.1e+02 Score=18.89 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
-.+.-++.+.|++++|.+..+.+.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555667777777777777777764
No 493
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=6.9e+02 Score=26.26 Aligned_cols=77 Identities=8% Similarity=0.054 Sum_probs=41.1
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA-YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
+++..+..+ .|....+.++......+.-++- -++++...+.+..-...-|..+++++...++.+.|.++++++.+.+
T Consensus 161 iie~~l~~~--~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 161 IIEKYLSDG--NDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred HHHHHHhCC--CcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhh
Confidence 344444444 2344445555444433322222 2344444443322222334556777788889999999999887654
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.59 E-value=4.4e+02 Score=23.40 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 222 MFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN-AWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
..+.++..|...|+++.|-++|..+.... +.|.. .|..-+..+.+.+.-....+.++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~ 101 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEW 101 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHH
Confidence 35566777777777777777777776542 22322 344444444444433333333333
No 495
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=9.6e+02 Score=26.28 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=75.2
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHH-HcCCCCC-HHHHHHH
Q 006437 48 LAPHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELA-RVGCVIK-AQTFLLF 125 (645)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~~~~~-~~~~~~l 125 (645)
+...++..++...+.+++|+++--.+...-...++...+.+++.-+.. .-.+.+.+.++.-. ..++++- ......+
T Consensus 60 ~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id--~yi~~~~~~~~~~~~~~~iD~rL~~iv~rm 137 (929)
T KOG2062|consen 60 LAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCID--MYIETASETYKNPEQKSPIDQRLRDIVERM 137 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHH--HHHHHHHHHhcCccccCCCCHHHHHHHHHH
Confidence 444667788889999999998775554333334455555555543333 01122222222111 1111111 1234444
Q ss_pred HHHHHhcCChHHHHH---------HHHH-HhhCCCCCCHHhHHHHHHHHHh-----cCCHhHHH---HHHhhcCCCChhh
Q 006437 126 LRIYWRGEMYGMVLE---------AFDE-MGRFGFTPNTFARNIVMDVLFK-----IGRVDLGI---KVLKETQLPNFLS 187 (645)
Q Consensus 126 i~~~~~~~~~~~a~~---------~~~~-~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~A~---~~~~~~~~~~~~~ 187 (645)
+..|...+++..|+- ++++ +.+..-. ....+.++..+.. ..+.+.-. +.|..++.||
T Consensus 138 i~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~--~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD--- 212 (929)
T KOG2062|consen 138 IQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSV--IGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD--- 212 (929)
T ss_pred HHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---
Confidence 555554444444433 2333 1222112 2233333333322 22222222 2333344554
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437 188 FNIALCNLCKLNDVSNVKDVIGMMVRK 214 (645)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 214 (645)
|-.+..+|.-..+.+.+.++++.+.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 334555666777888888888888764
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.14 E-value=4.2e+02 Score=22.03 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 110 LARVGCVIKAQTFLLFLRIYWRG-EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 110 m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
+.+.|..++..- ..++..+... +..-.|.++++.+.+.+...+..+.-.-++.+...|-
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344455444332 2334444433 3455667777777666655555554455555555553
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.03 E-value=2.1e+02 Score=22.67 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006437 189 NIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMG 234 (645)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 234 (645)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455566666667777777877777766666655444455555444
No 498
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.83 E-value=3.2e+02 Score=20.51 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006437 538 MLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 538 ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777776653
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=1.2e+03 Score=27.18 Aligned_cols=192 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+.+.--.+..+|...|...+|+..|.+.... +.-+...........-....+..+...-.... -.+-|..+++
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t------~lhYYlkv~r 991 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSG-FGEGNALRKLVYFLLPKRFSVADGKTPSEELT------ALHYYLKVVR 991 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhc-cccHHHHHHHHHHhcCCCCchhcCCCCCchHH------HHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER 546 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 546 (645)
.+-+.+..+.+.++-..+++. ++++ ..+++++.+.....|.+-+|...+-.-.+ ..-....+.-++...+..|
T Consensus 992 lle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 992 LLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhcc
Q ss_pred CHHH------------HHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437 547 NIKM------------VKR-LLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592 (645)
Q Consensus 547 ~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 592 (645)
.++. ... +++..-+....-....|+.|...+...+++.+|-.+.-+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 500
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.50 E-value=6.7e+02 Score=24.17 Aligned_cols=162 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HhHHHHHHhhcCCCChhhHHHHHHHHHhcCCc
Q 006437 123 LLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR-VDLGIKVLKETQLPNFLSFNIALCNLCKLNDV 201 (645)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 201 (645)
..+++...+.++..+-++.-.... ..|+.+-.+++-..-.... +.+|.++|++..+....+|+ +..+.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~AL----eIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr-------~sqq~ 256 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQAL----EINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYR-------QSQQC 256 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH----hcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh-------hHHHH
Q ss_pred chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 202 SNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN-AWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
..--...+.+.+++...-...-..+.-+.-+.|+..+|.+.++++.+.-.-.+.. ....|+.++....-+.+...++.+
T Consensus 257 qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 257 QHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred hhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHcCCCCChhchHH
Q 006437 281 MVQNGCSPNVVTYTS 295 (645)
Q Consensus 281 m~~~~~~~~~~~~~~ 295 (645)
..+-..+.+.....+
T Consensus 337 YDdislPkSA~icYT 351 (556)
T KOG3807|consen 337 YDDISLPKSAAICYT 351 (556)
T ss_pred hccccCcchHHHHHH
Done!