Query 006437
Match_columns 645
No_of_seqs 690 out of 3637
Neff 11.3
Searched_HMMs 29240
Date Tue Mar 26 00:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-40 8.6E-45 353.5 45.8 475 81-603 82-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-37 8E-42 330.6 43.1 479 53-578 90-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.6E-29 1.2E-33 255.1 27.5 186 187-372 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5E-30 1.7E-34 261.5 21.0 216 101-338 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.1E-30 224.7 47.3 181 394-580 205-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-25 2.4E-29 220.4 48.0 371 97-546 12-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.1E-23 1E-27 216.9 35.9 256 303-563 202-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.7E-22 5.7E-27 211.3 39.3 440 85-535 8-485 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.8E-21 3.3E-25 194.2 39.0 144 391-539 210-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 2.1E-20 7.3E-25 191.7 40.1 331 219-593 25-406 (450)
11 3fp2_A TPR repeat-containing p 99.9 1E-20 3.6E-25 198.8 37.0 254 304-595 216-490 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.9E-20 6.4E-25 196.9 38.7 437 82-564 24-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.6E-17 5.5E-22 164.5 38.6 315 257-603 5-340 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.4E-17 8.2E-22 163.2 39.7 326 187-578 5-351 (359)
15 2xm6_A Protein corresponding t 99.8 4.4E-16 1.5E-20 161.0 48.0 320 198-576 92-449 (490)
16 2xm6_A Protein corresponding t 99.8 7.8E-16 2.7E-20 159.1 47.0 356 182-599 36-435 (490)
17 1xi4_A Clathrin heavy chain; a 99.8 4E-15 1.4E-19 160.7 52.1 416 52-521 990-1440(1630)
18 3hym_B Cell division cycle pro 99.8 5.1E-17 1.7E-21 158.8 33.3 285 254-577 21-314 (330)
19 2ooe_A Cleavage stimulation fa 99.8 5.8E-16 2E-20 161.8 42.8 428 107-595 2-491 (530)
20 1xi4_A Clathrin heavy chain; a 99.8 8.2E-15 2.8E-19 158.3 51.1 422 117-591 983-1440(1630)
21 3hym_B Cell division cycle pro 99.8 1.3E-16 4.4E-21 156.0 34.0 293 217-549 19-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 1.5E-15 5.2E-20 158.7 43.2 423 70-561 2-492 (530)
23 1b89_A Protein (clathrin heavy 99.8 6.6E-18 2.3E-22 163.6 22.6 376 166-591 15-412 (449)
24 1fch_A Peroxisomal targeting s 99.8 6.9E-17 2.4E-21 160.6 28.0 289 268-593 38-356 (368)
25 1b89_A Protein (clathrin heavy 99.8 4.1E-17 1.4E-21 158.1 22.7 290 53-383 9-305 (449)
26 1fch_A Peroxisomal targeting s 99.8 1.3E-16 4.4E-21 158.7 26.6 151 404-558 193-356 (368)
27 4eqf_A PEX5-related protein; a 99.7 5E-16 1.7E-20 154.2 26.6 263 291-592 66-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.3E-20 143.9 27.3 250 266-561 10-264 (291)
29 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 148.6 26.8 155 437-594 148-313 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 7.1E-18 2.4E-22 176.2 10.5 118 220-337 127-248 (1134)
31 4eqf_A PEX5-related protein; a 99.7 6.1E-16 2.1E-20 153.6 23.4 272 256-557 66-352 (365)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.7E-22 174.9 10.3 136 252-387 124-263 (1134)
33 4g1t_A Interferon-induced prot 99.7 5.3E-14 1.8E-18 144.9 36.4 143 442-597 315-460 (472)
34 3mkr_A Coatomer subunit epsilo 99.7 5.1E-15 1.8E-19 140.8 26.0 253 336-603 10-269 (291)
35 3cv0_A Peroxisome targeting si 99.7 4.5E-15 1.6E-19 144.7 24.4 260 86-351 24-312 (327)
36 4g1t_A Interferon-induced prot 99.7 5.8E-14 2E-18 144.6 31.4 199 82-283 50-275 (472)
37 2pl2_A Hypothetical conserved 99.6 4.8E-14 1.6E-18 128.0 22.1 199 390-594 3-212 (217)
38 3e4b_A ALGK; tetratricopeptide 99.6 3E-13 1E-17 137.5 26.1 144 440-595 264-420 (452)
39 3uq3_A Heat shock protein STI1 99.6 3.5E-13 1.2E-17 126.2 24.2 229 291-561 6-236 (258)
40 3uq3_A Heat shock protein STI1 99.6 7E-13 2.4E-17 124.1 25.5 224 256-525 6-235 (258)
41 3e4b_A ALGK; tetratricopeptide 99.6 7.2E-13 2.5E-17 134.6 26.2 381 125-560 9-420 (452)
42 2q7f_A YRRB protein; TPR, prot 99.5 5.3E-13 1.8E-17 123.7 21.5 206 391-603 22-227 (243)
43 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.8E-17 120.2 25.9 206 392-603 37-243 (252)
44 1ouv_A Conserved hypothetical 99.5 2.4E-11 8.1E-16 114.8 32.8 224 324-597 5-252 (273)
45 2vq2_A PILW, putative fimbrial 99.5 4.6E-12 1.6E-16 115.7 26.3 207 391-603 7-216 (225)
46 2pl2_A Hypothetical conserved 99.5 7.3E-13 2.5E-17 120.2 20.4 194 81-280 3-210 (217)
47 3u4t_A TPR repeat-containing p 99.5 2E-12 6.7E-17 122.2 23.8 238 327-603 5-255 (272)
48 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.2E-15 120.4 40.2 439 99-596 47-570 (679)
49 3u4t_A TPR repeat-containing p 99.5 9.3E-12 3.2E-16 117.5 26.2 176 395-574 77-262 (272)
50 4e6h_A MRNA 3'-END-processing 99.5 6.9E-10 2.3E-14 116.5 42.4 448 63-542 48-584 (679)
51 2h6f_A Protein farnesyltransfe 99.5 3.6E-12 1.2E-16 125.3 23.8 242 326-609 98-361 (382)
52 1ouv_A Conserved hypothetical 99.5 6.8E-11 2.3E-15 111.7 31.9 224 290-563 6-253 (273)
53 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-11 4.8E-16 114.8 26.1 129 395-525 108-237 (252)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5.2E-17 123.2 19.3 220 59-283 17-243 (275)
55 2q7f_A YRRB protein; TPR, prot 99.5 3.5E-12 1.2E-16 118.2 21.1 213 324-574 22-234 (243)
56 2h6f_A Protein farnesyltransfe 99.5 1.3E-11 4.6E-16 121.2 25.2 247 291-578 98-364 (382)
57 2vq2_A PILW, putative fimbrial 99.5 4.4E-11 1.5E-15 109.1 27.0 204 324-563 7-213 (225)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.5E-12 8.6E-17 121.7 18.6 243 97-348 18-269 (275)
59 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.5E-16 106.6 22.2 171 426-603 4-175 (184)
60 2ond_A Cleavage stimulation fa 99.4 2.4E-10 8.1E-15 109.9 29.8 188 404-596 69-270 (308)
61 4a1s_A PINS, partner of inscut 99.4 5.1E-12 1.8E-16 127.4 18.8 203 394-596 128-372 (411)
62 3sf4_A G-protein-signaling mod 99.4 5.6E-12 1.9E-16 126.8 18.0 298 258-585 12-365 (406)
63 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.9E-16 124.5 19.5 280 288-596 7-336 (406)
64 3ro2_A PINS homolog, G-protein 99.4 1.3E-11 4.4E-16 120.5 18.2 203 394-596 85-332 (338)
65 3vtx_A MAMA; tetratricopeptide 99.4 9.1E-11 3.1E-15 103.3 22.0 167 391-562 4-171 (184)
66 4a1s_A PINS, partner of inscut 99.4 1.7E-11 5.8E-16 123.6 18.2 274 260-562 53-373 (411)
67 3ulq_A Response regulator aspa 99.3 1.7E-10 5.9E-15 114.9 24.0 237 296-594 109-366 (383)
68 2ond_A Cleavage stimulation fa 99.3 1.3E-09 4.5E-14 104.6 29.0 81 272-353 33-127 (308)
69 3ulq_A Response regulator aspa 99.3 2E-10 6.9E-15 114.4 23.7 162 463-627 185-368 (383)
70 4abn_A Tetratricopeptide repea 99.3 5.7E-11 1.9E-15 121.5 19.8 195 391-592 101-317 (474)
71 3nf1_A KLC 1, kinesin light ch 99.3 8.8E-11 3E-15 113.1 19.9 204 392-595 27-306 (311)
72 3ro2_A PINS homolog, G-protein 99.3 1E-10 3.5E-15 114.0 20.5 264 89-354 11-332 (338)
73 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-10 6.3E-15 122.4 21.6 163 427-594 9-172 (723)
74 4abn_A Tetratricopeptide repea 99.3 1.8E-10 6.2E-15 117.7 20.2 213 306-558 84-318 (474)
75 3as5_A MAMA; tetratricopeptide 99.3 4E-10 1.4E-14 99.1 19.8 162 430-595 11-172 (186)
76 4i17_A Hypothetical protein; T 99.3 1.3E-09 4.5E-14 99.5 22.7 200 390-603 5-214 (228)
77 3q15_A PSP28, response regulat 99.2 2.2E-09 7.6E-14 106.5 25.9 233 331-595 107-364 (378)
78 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-10 4.1E-15 112.2 15.1 172 221-420 28-223 (311)
79 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.9E-14 95.4 20.5 167 392-562 8-174 (186)
80 1hz4_A MALT regulatory protein 99.2 1.3E-08 4.4E-13 100.9 29.6 272 261-560 20-321 (373)
81 3q15_A PSP28, response regulat 99.2 2.2E-09 7.6E-14 106.5 23.8 312 218-560 8-364 (378)
82 4i17_A Hypothetical protein; T 99.2 2.1E-09 7.3E-14 98.2 20.0 155 425-582 5-168 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1.2E-09 4.2E-14 116.1 20.9 165 391-560 8-173 (723)
84 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.9E-13 94.3 24.5 184 411-603 85-287 (310)
85 1hz4_A MALT regulatory protein 99.1 2E-08 6.8E-13 99.5 27.0 271 227-525 21-321 (373)
86 3edt_B KLC 2, kinesin light ch 99.1 5.9E-10 2E-14 105.6 15.3 224 372-595 13-280 (283)
87 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.6E-13 83.7 17.3 129 464-595 3-131 (136)
88 1qqe_A Vesicular transport pro 99.0 6.9E-08 2.4E-12 91.7 22.9 132 394-525 79-227 (292)
89 3edt_B KLC 2, kinesin light ch 99.0 1.3E-08 4.5E-13 96.1 17.8 232 97-353 14-280 (283)
90 1qqe_A Vesicular transport pro 99.0 1.2E-08 4.1E-13 97.0 17.1 207 395-603 40-274 (292)
91 3urz_A Uncharacterized protein 99.0 1.8E-08 6.2E-13 90.3 17.1 179 397-603 9-191 (208)
92 3qky_A Outer membrane assembly 99.0 4.3E-08 1.5E-12 91.5 20.1 166 391-560 14-223 (261)
93 4ga2_A E3 SUMO-protein ligase 99.0 2.6E-09 8.7E-14 90.0 10.2 139 439-582 9-149 (150)
94 2fo7_A Synthetic consensus TPR 99.0 3.9E-08 1.3E-12 80.8 17.3 128 431-561 5-132 (136)
95 2uy1_A Cleavage stimulation fa 99.0 9E-07 3.1E-11 90.2 30.1 383 97-560 7-412 (493)
96 3qky_A Outer membrane assembly 98.9 4.5E-08 1.5E-12 91.4 18.9 175 425-603 13-229 (261)
97 2uy1_A Cleavage stimulation fa 98.9 7.1E-07 2.4E-11 91.0 28.8 187 391-595 212-412 (493)
98 3rjv_A Putative SEL1 repeat pr 98.9 9.5E-08 3.2E-12 85.8 19.8 177 410-600 4-201 (212)
99 3mv2_B Coatomer subunit epsilo 98.9 4.9E-07 1.7E-11 84.1 24.0 145 204-353 85-239 (310)
100 2r5s_A Uncharacterized protein 98.9 2E-08 6.8E-13 87.3 13.8 160 430-594 9-171 (176)
101 3urz_A Uncharacterized protein 98.9 9.1E-08 3.1E-12 85.6 18.2 187 362-573 6-196 (208)
102 3qou_A Protein YBBN; thioredox 98.9 4.6E-08 1.6E-12 92.6 16.8 165 425-594 115-282 (287)
103 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.3E-13 109.0 14.3 173 403-582 402-583 (681)
104 2vsy_A XCC0866; transferase, g 98.9 5.3E-08 1.8E-12 102.3 18.6 155 405-564 2-160 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.4E-12 85.3 19.1 186 392-596 4-213 (225)
106 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 82.5 20.6 183 359-564 3-216 (225)
107 2pzi_A Probable serine/threoni 98.8 5.4E-08 1.8E-12 104.1 16.1 158 438-603 402-568 (681)
108 3rjv_A Putative SEL1 repeat pr 98.8 4.1E-07 1.4E-11 81.6 19.3 166 390-564 16-200 (212)
109 3dra_A Protein farnesyltransfe 98.8 2.9E-06 1E-10 79.7 25.5 211 392-608 67-300 (306)
110 4ga2_A E3 SUMO-protein ligase 98.8 2.3E-08 7.7E-13 84.2 9.9 141 401-547 6-149 (150)
111 3qou_A Protein YBBN; thioredox 98.8 5.4E-07 1.8E-11 85.2 19.7 165 116-282 114-282 (287)
112 2vsy_A XCC0866; transferase, g 98.7 1.8E-07 6.2E-12 98.3 17.0 152 373-527 2-158 (568)
113 2r5s_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 79.1 16.2 159 122-282 9-171 (176)
114 4gco_A Protein STI-1; structur 98.7 4.7E-07 1.6E-11 73.3 14.6 106 464-573 15-121 (126)
115 3dra_A Protein farnesyltransfe 98.7 1.9E-05 6.4E-10 74.3 26.2 214 101-318 50-286 (306)
116 1a17_A Serine/threonine protei 98.6 1.2E-06 4E-11 75.0 16.4 130 462-594 13-144 (166)
117 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.9E-11 70.1 15.8 115 462-579 9-123 (125)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 78.3 17.1 124 432-561 11-150 (213)
119 3u3w_A Transcriptional activat 98.6 2.7E-06 9.3E-11 80.7 19.9 162 434-595 82-265 (293)
120 2ifu_A Gamma-SNAP; membrane fu 98.6 4.9E-07 1.7E-11 86.5 14.6 192 394-588 38-253 (307)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.3E-06 7.9E-11 76.7 18.2 123 397-525 11-149 (213)
122 3u3w_A Transcriptional activat 98.6 6.5E-06 2.2E-10 78.0 22.0 166 395-560 78-265 (293)
123 3gyz_A Chaperone protein IPGC; 98.6 8.3E-07 2.8E-11 74.1 12.9 96 497-595 36-132 (151)
124 2vyi_A SGTA protein; chaperone 98.6 2.3E-06 7.9E-11 69.5 15.6 120 461-583 11-130 (131)
125 2qfc_A PLCR protein; TPR, HTH, 98.6 7.2E-06 2.5E-10 77.7 21.1 163 432-594 80-264 (293)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 5.6E-06 1.9E-10 78.5 20.2 167 394-560 77-265 (293)
127 4gco_A Protein STI-1; structur 98.6 2E-06 6.8E-11 69.5 14.5 106 429-538 15-121 (126)
128 3gyz_A Chaperone protein IPGC; 98.5 1.9E-06 6.4E-11 72.0 14.2 93 465-560 39-132 (151)
129 3gw4_A Uncharacterized protein 98.5 9.5E-07 3.3E-11 78.5 13.2 157 439-596 4-176 (203)
130 2lni_A Stress-induced-phosphop 98.5 2.3E-06 7.8E-11 69.9 14.4 118 461-581 15-132 (133)
131 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.8E-11 76.2 12.9 120 439-562 22-145 (177)
132 2vgx_A Chaperone SYCD; alterna 98.5 3.8E-07 1.3E-11 76.3 9.5 94 464-560 23-117 (148)
133 1p5q_A FKBP52, FK506-binding p 98.5 2E-06 7E-11 83.2 15.9 130 461-594 146-292 (336)
134 1a17_A Serine/threonine protei 98.5 4.4E-06 1.5E-10 71.3 16.5 127 429-559 15-144 (166)
135 2vgx_A Chaperone SYCD; alterna 98.5 6.3E-07 2.2E-11 74.9 10.7 97 496-595 20-117 (148)
136 2c2l_A CHIP, carboxy terminus 98.5 7.4E-07 2.5E-11 83.9 11.5 196 391-596 3-199 (281)
137 2ifu_A Gamma-SNAP; membrane fu 98.5 4.4E-06 1.5E-10 79.8 16.8 188 361-553 37-253 (307)
138 2fbn_A 70 kDa peptidylprolyl i 98.5 3.9E-07 1.3E-11 80.8 8.5 133 462-597 38-187 (198)
139 1na0_A Designed protein CTPR3; 98.5 8.3E-06 2.8E-10 65.4 15.7 112 428-543 10-122 (125)
140 2c2l_A CHIP, carboxy terminus 98.4 6.5E-07 2.2E-11 84.2 9.9 190 426-627 3-199 (281)
141 4f3v_A ESX-1 secretion system 98.4 7.7E-06 2.6E-10 75.0 16.3 187 59-250 18-238 (282)
142 4f3v_A ESX-1 secretion system 98.4 6.2E-06 2.1E-10 75.6 15.6 191 404-601 18-240 (282)
143 3upv_A Heat shock protein STI1 98.4 6E-06 2.1E-10 66.7 14.1 95 464-561 6-101 (126)
144 2vyi_A SGTA protein; chaperone 98.4 7.2E-06 2.5E-10 66.5 14.5 116 428-547 13-129 (131)
145 2lni_A Stress-induced-phosphop 98.4 5E-06 1.7E-10 67.7 13.5 97 392-490 16-112 (133)
146 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.5E-11 72.5 9.5 95 464-561 20-115 (142)
147 4gcn_A Protein STI-1; structur 98.4 4.8E-06 1.6E-10 67.4 12.6 95 465-560 11-111 (127)
148 3q7a_A Farnesyltransferase alp 98.4 0.00024 8.4E-09 67.4 25.9 66 445-512 185-257 (349)
149 1p5q_A FKBP52, FK506-binding p 98.4 6E-06 2E-10 79.9 15.4 95 462-559 196-292 (336)
150 2e2e_A Formate-dependent nitri 98.4 2.3E-06 7.9E-11 74.1 11.3 125 403-532 21-148 (177)
151 3q7a_A Farnesyltransferase alp 98.4 0.00022 7.7E-09 67.7 25.4 170 97-270 67-257 (349)
152 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.6E-10 62.9 15.3 94 465-560 7-100 (118)
153 3dss_A Geranylgeranyl transfer 98.4 5.3E-05 1.8E-09 71.6 20.8 201 403-611 40-280 (331)
154 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.1E-10 64.9 13.9 96 428-525 5-100 (126)
155 2xcb_A PCRH, regulatory protei 98.3 2.9E-06 9.8E-11 70.4 10.2 98 496-596 17-115 (142)
156 3gw4_A Uncharacterized protein 98.3 6.1E-06 2.1E-10 73.2 12.7 60 222-281 68-133 (203)
157 1elw_A TPR1-domain of HOP; HOP 98.3 1.7E-05 5.7E-10 62.9 13.8 104 496-603 3-106 (118)
158 3dss_A Geranylgeranyl transfer 98.3 0.00078 2.7E-08 63.7 27.1 180 390-575 106-317 (331)
159 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4E-10 65.0 12.9 106 429-537 10-121 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 1E-05 3.4E-10 69.0 12.5 100 461-563 10-110 (164)
161 1hxi_A PEX5, peroxisome target 98.3 8.5E-06 2.9E-10 65.2 11.0 93 499-594 19-112 (121)
162 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.7E-10 65.4 11.8 109 464-575 6-120 (131)
163 2dba_A Smooth muscle cell asso 98.2 2.7E-05 9.4E-10 64.7 14.5 95 497-594 28-126 (148)
164 3q49_B STIP1 homology and U bo 98.2 2.5E-05 8.4E-10 64.0 13.8 97 461-560 8-105 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 2.3E-05 8E-10 66.7 14.0 94 498-594 12-106 (164)
166 2kck_A TPR repeat; tetratricop 98.2 1.9E-05 6.6E-10 61.8 12.6 100 496-596 5-106 (112)
167 2dba_A Smooth muscle cell asso 98.2 5.3E-05 1.8E-09 62.9 15.5 110 461-575 27-141 (148)
168 3q49_B STIP1 homology and U bo 98.2 2.6E-05 8.9E-10 63.9 13.2 97 496-594 8-104 (137)
169 1elr_A TPR2A-domain of HOP; HO 98.2 1.6E-05 5.6E-10 64.3 11.6 110 429-541 6-121 (131)
170 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.7E-10 62.2 11.3 97 464-562 8-107 (112)
171 2fbn_A 70 kDa peptidylprolyl i 98.1 3.5E-05 1.2E-09 68.0 13.8 93 463-558 89-183 (198)
172 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.7E-10 66.7 11.6 133 463-595 10-157 (164)
173 1hxi_A PEX5, peroxisome target 98.1 2.2E-05 7.5E-10 62.8 11.1 91 467-560 22-113 (121)
174 4b4t_Q 26S proteasome regulato 98.1 0.0001 3.5E-09 74.2 18.1 196 400-595 12-244 (434)
175 1dce_A Protein (RAB geranylger 98.1 0.00017 5.9E-09 74.6 19.8 171 442-616 44-241 (567)
176 1wao_1 Serine/threonine protei 98.1 2.2E-05 7.7E-10 79.7 12.5 114 439-556 18-134 (477)
177 1wao_1 Serine/threonine protei 98.1 1E-05 3.6E-10 82.2 10.0 120 468-591 12-134 (477)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.8E-05 9.5E-10 78.7 13.0 128 463-594 269-413 (457)
179 2xev_A YBGF; tetratricopeptide 98.1 0.00015 5E-09 58.5 15.1 91 468-561 8-105 (129)
180 1ihg_A Cyclophilin 40; ppiase 98.1 4.2E-05 1.4E-09 74.8 13.5 120 465-588 226-362 (370)
181 2xev_A YBGF; tetratricopeptide 98.0 5.9E-05 2E-09 60.9 12.2 100 500-603 5-110 (129)
182 3rkv_A Putative peptidylprolyl 98.0 4.4E-05 1.5E-09 64.8 11.5 99 464-564 13-129 (162)
183 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.5E-10 63.7 7.1 85 475-561 3-90 (117)
184 2hr2_A Hypothetical protein; a 98.0 8.6E-05 3E-09 61.2 11.5 60 534-594 59-129 (159)
185 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.3E-10 76.0 8.2 146 428-595 180-327 (338)
186 3rkv_A Putative peptidylprolyl 97.9 0.00015 5.1E-09 61.4 12.5 70 461-533 62-131 (162)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00015 5.3E-09 73.2 14.5 94 462-558 317-412 (457)
188 4b4t_Q 26S proteasome regulato 97.9 0.00041 1.4E-08 69.7 17.7 156 127-282 12-202 (434)
189 3k9i_A BH0479 protein; putativ 97.9 1.9E-05 6.5E-10 62.7 6.1 88 509-597 2-91 (117)
190 3ro3_A PINS homolog, G-protein 97.9 0.00012 4.1E-09 61.7 11.6 97 464-560 51-157 (164)
191 1dce_A Protein (RAB geranylger 97.9 0.00083 2.9E-08 69.5 19.5 174 405-585 42-244 (567)
192 1ihg_A Cyclophilin 40; ppiase 97.8 0.00018 6.1E-09 70.3 13.3 90 461-553 272-362 (370)
193 1klx_A Cysteine rich protein B 97.8 0.00064 2.2E-08 55.5 14.5 110 477-597 10-127 (138)
194 2hr2_A Hypothetical protein; a 97.7 0.00043 1.5E-08 57.1 11.8 95 465-561 14-131 (159)
195 1klx_A Cysteine rich protein B 97.7 0.0011 3.7E-08 54.1 14.2 110 442-562 10-127 (138)
196 2l6j_A TPR repeat-containing p 97.7 5.8E-05 2E-09 59.0 6.1 91 497-589 4-100 (111)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4E-09 70.8 8.9 150 392-563 179-330 (338)
198 3n71_A Histone lysine methyltr 97.6 0.0002 6.9E-09 72.2 10.5 126 472-597 319-465 (490)
199 2kat_A Uncharacterized protein 97.5 0.00069 2.3E-08 53.2 10.5 77 481-560 4-81 (115)
200 1zu2_A Mitochondrial import re 97.5 0.00017 5.8E-09 59.3 6.9 91 442-536 17-128 (158)
201 2kat_A Uncharacterized protein 97.5 0.00044 1.5E-08 54.4 9.1 79 445-525 3-81 (115)
202 1na3_A Designed protein CTPR2; 97.5 0.00093 3.2E-08 49.6 10.5 81 497-579 9-89 (91)
203 2l6j_A TPR repeat-containing p 97.5 0.00039 1.3E-08 54.1 8.6 90 461-553 3-99 (111)
204 1zu2_A Mitochondrial import re 97.5 0.00024 8E-09 58.5 7.2 88 473-563 13-122 (158)
205 3n71_A Histone lysine methyltr 97.5 0.00088 3E-08 67.6 12.6 97 187-283 353-463 (490)
206 1na3_A Designed protein CTPR2; 97.4 0.0014 4.7E-08 48.6 10.4 80 462-544 9-89 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.6E-08 50.0 8.6 63 496-560 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.1 0.0028 9.4E-08 48.2 8.8 65 531-596 6-70 (100)
209 3ly7_A Transcriptional activat 96.7 0.023 7.9E-07 53.9 13.6 44 424-468 191-239 (372)
210 3qww_A SET and MYND domain-con 96.7 0.011 3.9E-07 58.4 11.5 84 511-594 312-409 (433)
211 3ly7_A Transcriptional activat 96.6 0.023 7.8E-07 53.9 12.7 139 459-603 191-344 (372)
212 3bee_A Putative YFRE protein; 96.5 0.018 6.1E-07 42.8 9.2 65 495-561 4-72 (93)
213 3mkq_A Coatomer beta'-subunit; 96.5 0.041 1.4E-06 60.2 16.2 74 230-318 662-735 (814)
214 1wy6_A Hypothetical protein ST 96.4 0.23 7.8E-06 38.7 14.5 139 404-564 19-157 (172)
215 2kc7_A BFR218_protein; tetratr 96.4 0.0037 1.3E-07 47.2 4.8 53 472-525 10-63 (99)
216 3qwp_A SET and MYND domain-con 96.4 0.028 9.5E-07 55.7 12.3 61 534-594 331-398 (429)
217 3qww_A SET and MYND domain-con 96.3 0.011 3.7E-07 58.6 9.0 86 475-560 311-410 (433)
218 3lvg_A Clathrin heavy chain 1; 96.3 0.00014 4.9E-09 70.1 -4.2 113 120-245 55-169 (624)
219 3qwp_A SET and MYND domain-con 96.2 0.019 6.4E-07 57.0 10.1 91 470-560 295-399 (429)
220 2kc7_A BFR218_protein; tetratr 96.2 0.045 1.5E-06 41.0 10.2 60 503-564 6-67 (99)
221 3bee_A Putative YFRE protein; 96.1 0.03 1E-06 41.6 8.3 64 531-595 5-71 (93)
222 1pc2_A Mitochondria fission pr 96.0 0.035 1.2E-06 45.1 8.9 82 478-561 14-100 (152)
223 1pc2_A Mitochondria fission pr 96.0 0.047 1.6E-06 44.3 9.7 88 513-603 14-105 (152)
224 3mkq_A Coatomer beta'-subunit; 96.0 0.097 3.3E-06 57.2 15.6 99 403-525 610-709 (814)
225 3lvg_A Clathrin heavy chain 1; 95.8 0.0023 7.9E-08 61.9 1.2 212 82-310 82-324 (624)
226 3u64_A Protein TP_0956; tetrat 95.8 0.059 2E-06 48.9 10.1 84 514-599 180-272 (301)
227 3mkq_B Coatomer subunit alpha; 95.6 0.43 1.5E-05 39.7 13.9 127 437-593 15-141 (177)
228 3mkq_B Coatomer subunit alpha; 95.4 0.74 2.5E-05 38.4 14.7 25 220-244 34-58 (177)
229 2v5f_A Prolyl 4-hydroxylase su 95.1 0.11 3.9E-06 39.4 8.6 61 465-525 8-74 (104)
230 3u64_A Protein TP_0956; tetrat 95.1 0.2 6.7E-06 45.6 11.0 83 478-564 179-272 (301)
231 4h7y_A Dual specificity protei 95.0 0.21 7E-06 40.0 9.6 56 546-602 74-129 (161)
232 1wy6_A Hypothetical protein ST 95.0 0.98 3.4E-05 35.3 16.2 140 438-599 18-157 (172)
233 4h7y_A Dual specificity protei 95.0 0.39 1.3E-05 38.4 11.1 113 461-576 12-137 (161)
234 2v5f_A Prolyl 4-hydroxylase su 94.9 0.24 8.3E-06 37.5 10.0 66 498-563 6-77 (104)
235 1nzn_A CGI-135 protein, fissio 94.5 0.38 1.3E-05 37.4 9.9 86 476-563 15-105 (126)
236 1nzn_A CGI-135 protein, fissio 93.8 0.28 9.5E-06 38.2 7.9 89 512-603 16-108 (126)
237 4ady_A RPN2, 26S proteasome re 93.4 10 0.00035 41.0 39.4 153 402-560 500-657 (963)
238 4ady_A RPN2, 26S proteasome re 93.1 11 0.00039 40.6 33.5 204 371-581 501-720 (963)
239 3o48_A Mitochondria fission 1 91.2 2.9 9.8E-05 32.7 10.4 73 529-603 37-112 (134)
240 2ff4_A Probable regulatory pro 90.7 2.7 9.3E-05 40.8 12.6 56 467-523 176-231 (388)
241 4gns_B Protein CSD3, chitin bi 90.7 2.6 8.9E-05 44.5 13.0 51 542-593 347-397 (754)
242 2ff4_A Probable regulatory pro 90.4 1.2 3.9E-05 43.4 9.6 76 500-577 174-255 (388)
243 1y8m_A FIS1; mitochondria, unk 89.9 5.4 0.00018 31.6 11.1 73 529-603 36-111 (144)
244 1v54_E Cytochrome C oxidase po 88.8 2.3 7.8E-05 31.2 7.4 46 238-283 28-73 (109)
245 4fhn_B Nucleoporin NUP120; pro 88.7 8.6 0.00029 43.5 16.4 130 464-595 901-1049(1139)
246 4gns_B Protein CSD3, chitin bi 88.7 2.2 7.6E-05 45.0 10.6 50 473-523 348-397 (754)
247 1qsa_A Protein (soluble lytic 87.9 27 0.00092 36.1 30.1 346 73-451 62-437 (618)
248 1v54_E Cytochrome C oxidase po 87.9 5.5 0.00019 29.2 8.9 63 99-163 25-88 (109)
249 4b4t_P 26S proteasome regulato 87.1 24 0.00084 34.7 20.2 95 189-283 141-246 (445)
250 4b4t_P 26S proteasome regulato 87.0 25 0.00085 34.7 19.2 57 467-523 142-203 (445)
251 3o48_A Mitochondria fission 1 85.2 9.6 0.00033 29.8 9.8 27 534-560 80-106 (134)
252 1y8m_A FIS1; mitochondria, unk 84.2 14 0.00048 29.3 11.2 70 494-563 36-108 (144)
253 4fhn_B Nucleoporin NUP120; pro 83.2 34 0.0012 38.6 17.6 52 159-211 817-868 (1139)
254 3esl_A Checkpoint serine/threo 82.8 13 0.00044 31.6 10.4 56 510-565 92-148 (202)
255 2uwj_G Type III export protein 82.1 12 0.00043 27.2 8.4 79 133-215 20-98 (115)
256 2y69_E Cytochrome C oxidase su 81.9 8 0.00027 30.1 7.9 45 239-283 72-116 (152)
257 2p58_C Putative type III secre 81.6 13 0.00045 27.1 8.9 79 133-215 21-99 (116)
258 2wpv_A GET4, UPF0363 protein Y 81.3 34 0.0011 31.6 19.3 139 402-559 63-215 (312)
259 2y69_E Cytochrome C oxidase su 79.6 14 0.00049 28.8 8.6 64 99-163 68-131 (152)
260 1wdy_A 2-5A-dependent ribonucl 79.5 14 0.00049 33.3 11.0 10 472-481 226-235 (285)
261 3ffl_A Anaphase-promoting comp 78.9 5.1 0.00017 32.8 6.4 116 467-595 25-150 (167)
262 3ffl_A Anaphase-promoting comp 78.6 22 0.00076 29.1 10.1 26 156-181 124-149 (167)
263 2p58_C Putative type III secre 78.5 17 0.00058 26.6 8.1 76 512-597 22-99 (116)
264 1qsa_A Protein (soluble lytic 77.9 67 0.0023 33.1 37.0 188 398-603 291-486 (618)
265 1wdy_A 2-5A-dependent ribonucl 76.8 16 0.00056 32.9 10.6 23 337-359 191-213 (285)
266 3ltm_A Alpha-REP4; protein eng 76.1 36 0.0012 29.0 21.2 142 81-235 31-172 (211)
267 1zbp_A Hypothetical protein VP 75.0 46 0.0016 29.7 14.2 145 472-642 7-164 (273)
268 2uwj_G Type III export protein 74.6 17 0.00056 26.6 7.2 76 512-597 21-98 (115)
269 4a1g_A Mitotic checkpoint seri 74.2 28 0.00096 28.0 9.5 53 551-603 84-137 (152)
270 3lpz_A GET4 (YOR164C homolog); 73.7 58 0.002 30.3 22.2 139 402-559 65-214 (336)
271 2wvi_A Mitotic checkpoint seri 70.8 40 0.0014 27.6 9.8 51 516-566 79-130 (164)
272 4b4t_R RPN7, 26S proteasome re 69.6 25 0.00084 34.5 10.2 61 429-489 133-195 (429)
273 3ltm_A Alpha-REP4; protein eng 69.3 52 0.0018 28.0 20.2 153 117-282 31-183 (211)
274 4b4t_R RPN7, 26S proteasome re 68.6 46 0.0016 32.5 11.9 97 187-283 133-236 (429)
275 4g8k_A 2-5A-dependent ribonucl 68.5 75 0.0026 29.5 14.4 17 126-142 29-45 (337)
276 1k1a_A B-cell lymphoma 3-encod 67.0 27 0.00093 30.5 9.3 23 228-250 14-36 (241)
277 3eu9_A Huntingtin-interacting 65.4 42 0.0014 29.0 10.3 20 161-180 46-65 (240)
278 3eu9_A Huntingtin-interacting 65.4 30 0.001 30.1 9.2 9 334-342 115-123 (240)
279 3lpz_A GET4 (YOR164C homolog); 65.0 90 0.0031 29.1 20.5 142 91-248 63-215 (336)
280 4g8k_A 2-5A-dependent ribonucl 63.1 69 0.0024 29.7 11.8 49 508-567 281-329 (337)
281 1zbp_A Hypothetical protein VP 62.1 88 0.003 28.0 15.8 114 435-561 5-129 (273)
282 3hra_A Ankyrin repeat family p 60.4 56 0.0019 27.3 9.8 15 165-179 13-27 (201)
283 3kea_A K1L; tropism, ANK repea 59.6 72 0.0025 28.8 10.9 63 260-327 163-225 (285)
284 4a1g_A Mitotic checkpoint seri 57.0 47 0.0016 26.7 7.6 55 138-192 84-139 (152)
285 3txn_A 26S proteasome regulato 56.9 1.4E+02 0.0048 28.6 22.9 58 225-282 104-166 (394)
286 3kea_A K1L; tropism, ANK repea 56.6 79 0.0027 28.5 10.6 142 162-315 36-183 (285)
287 2wpv_A GET4, UPF0363 protein Y 56.0 1.3E+02 0.0043 27.8 23.0 25 359-383 133-157 (312)
288 3esl_A Checkpoint serine/threo 55.0 97 0.0033 26.2 11.4 56 475-530 92-148 (202)
289 1k1a_A B-cell lymphoma 3-encod 54.6 80 0.0027 27.3 10.1 19 130-148 17-35 (241)
290 3t8k_A Uncharacterized protein 53.6 92 0.0032 25.9 9.7 23 197-219 47-69 (186)
291 4b4t_S RPN3, 26S proteasome re 52.1 1.2E+02 0.0041 30.3 11.2 60 154-213 231-298 (523)
292 3ltj_A Alpharep-4; protein eng 51.8 1E+02 0.0036 25.7 20.8 141 82-235 27-167 (201)
293 1n11_A Ankyrin; clathrin, BAND 51.5 1.2E+02 0.0041 29.4 11.7 11 584-594 390-400 (437)
294 3ltj_A Alpharep-4; protein eng 51.4 1.1E+02 0.0036 25.6 21.0 123 151-282 56-178 (201)
295 4aez_C MAD3, mitotic spindle c 50.8 52 0.0018 28.4 7.4 52 514-565 131-183 (223)
296 1ug3_A EIF4GI, eukaryotic prot 50.4 1.3E+02 0.0046 28.1 11.1 9 395-403 275-283 (339)
297 3mv2_A Coatomer subunit alpha; 50.0 97 0.0033 28.5 9.4 54 511-564 184-239 (325)
298 3eiq_C Programmed cell death p 48.0 1.3E+02 0.0044 28.4 10.4 238 224-479 58-305 (358)
299 3jxi_A Vanilloid receptor-rela 44.4 35 0.0012 30.3 6.0 49 97-145 15-72 (260)
300 2d2s_A Exocyst complex compone 41.3 1.4E+02 0.0049 26.0 9.1 22 468-489 24-45 (235)
301 3jxi_A Vanilloid receptor-rela 41.0 28 0.00096 30.9 4.7 27 127-153 10-36 (260)
302 4aez_C MAD3, mitotic spindle c 40.1 96 0.0033 26.8 7.4 60 136-195 131-191 (223)
303 3t8k_A Uncharacterized protein 38.3 1.7E+02 0.0058 24.2 9.5 131 225-355 40-181 (186)
304 3utm_A Tankyrase-1; tankyrase, 38.1 2.4E+02 0.0082 25.9 11.7 12 232-243 33-44 (351)
305 1n11_A Ankyrin; clathrin, BAND 37.7 1.6E+02 0.0056 28.4 10.2 18 162-179 52-69 (437)
306 2d2s_A Exocyst complex compone 37.6 2.1E+02 0.0071 25.0 9.9 89 262-353 25-119 (235)
307 3ljn_A Hypothetical protein; a 37.1 1.3E+02 0.0044 28.2 9.0 16 334-349 250-265 (364)
308 2keb_A DNA polymerase subunit 35.8 1.2E+02 0.0043 21.9 6.8 58 516-573 28-88 (101)
309 2wvi_A Mitotic checkpoint seri 35.4 1.8E+02 0.0062 23.7 10.1 51 103-153 79-130 (164)
310 2rfa_A Transient receptor pote 34.9 2.1E+02 0.0072 24.3 10.8 17 334-350 203-219 (232)
311 3kae_A CDC27, possible protein 34.7 1.6E+02 0.0054 24.2 7.3 28 567-594 114-141 (242)
312 1oyz_A Hypothetical protein YI 33.8 2.5E+02 0.0086 24.9 21.9 18 253-270 140-157 (280)
313 3b7b_A Euchromatic histone-lys 33.3 59 0.002 28.1 5.5 17 438-454 218-234 (237)
314 2nsz_A Programmed cell death p 32.3 1.3E+02 0.0044 23.3 6.6 24 259-282 11-34 (129)
315 2nsz_A Programmed cell death p 31.6 1.8E+02 0.0061 22.5 7.4 26 158-183 11-36 (129)
316 2fe3_A Peroxide operon regulat 31.4 1.7E+02 0.006 23.0 7.5 15 201-215 37-51 (145)
317 3b7b_A Euchromatic histone-lys 31.3 2.4E+02 0.0083 23.9 9.6 21 333-353 215-235 (237)
318 1s6c_A KV4 potassium channel-i 31.0 2.1E+02 0.0072 23.1 12.1 65 82-146 37-102 (183)
319 4ets_A Ferric uptake regulatio 30.6 1.3E+02 0.0045 24.4 6.7 44 125-168 38-83 (162)
320 1bpo_A Protein (clathrin); cla 30.3 4E+02 0.014 26.1 12.3 123 50-179 332-454 (494)
321 2zu6_B Programmed cell death p 29.3 3.3E+02 0.011 24.9 10.3 69 293-362 169-239 (307)
322 3c1d_A Protein ORAA, regulator 28.2 2.3E+02 0.008 22.8 9.5 49 237-287 47-95 (159)
323 3hra_A Ankyrin repeat family p 28.2 2.1E+02 0.0073 23.5 8.2 16 164-179 46-61 (201)
324 1mzb_A Ferric uptake regulatio 28.1 1.8E+02 0.0061 22.6 6.9 60 416-476 7-67 (136)
325 2fu4_A Ferric uptake regulatio 28.0 1.5E+02 0.0051 20.4 6.5 11 551-561 36-46 (83)
326 3aji_A 26S proteasome non-ATPa 28.0 2.2E+02 0.0074 24.2 8.4 13 97-109 16-28 (231)
327 2fu4_A Ferric uptake regulatio 27.4 1.5E+02 0.0052 20.3 6.4 58 418-476 8-66 (83)
328 2xig_A Ferric uptake regulatio 26.8 2.4E+02 0.0082 22.4 7.6 41 192-232 33-73 (150)
329 2ion_A PDCD4, programmed cell 26.8 1.4E+02 0.0048 23.9 6.0 26 158-183 13-38 (152)
330 2fe3_A Peroxide operon regulat 26.8 2.3E+02 0.008 22.3 8.1 61 108-169 11-71 (145)
331 3aji_A 26S proteasome non-ATPa 26.7 2.9E+02 0.0099 23.3 10.3 18 162-179 11-28 (231)
332 3mkr_B Coatomer subunit alpha; 26.5 1.3E+02 0.0046 27.6 6.4 50 514-563 178-229 (320)
333 2qx5_A Nucleoporin NIC96; mRNA 26.3 5.6E+02 0.019 26.5 24.2 33 567-602 533-570 (661)
334 4ets_A Ferric uptake regulatio 25.9 2E+02 0.0069 23.3 7.0 45 190-234 37-83 (162)
335 1bd8_A P19INK4D CDK4/6 inhibit 25.5 86 0.0029 24.7 4.8 9 301-309 141-149 (156)
336 2f6m_A Suppressor protein STP2 25.2 1.3E+02 0.0046 19.9 4.5 47 85-133 4-50 (65)
337 4b4t_S RPN3, 26S proteasome re 24.9 5.3E+02 0.018 25.7 13.1 62 292-353 233-298 (523)
338 2ion_A PDCD4, programmed cell 24.8 1.2E+02 0.004 24.4 5.2 25 258-282 12-36 (152)
339 2o03_A Probable zinc uptake re 24.6 1.4E+02 0.0048 23.1 5.6 45 89-134 16-60 (131)
340 3eyy_A Putative iron uptake re 24.5 2.5E+02 0.0085 22.1 7.2 33 201-233 33-65 (145)
341 4fke_A Aminopeptidase N; zinc 24.1 7.2E+02 0.025 27.0 17.3 157 190-352 691-858 (909)
342 3twr_A Tankyrase-2; ankyrin re 24.1 2.3E+02 0.0077 22.4 7.3 15 229-243 14-28 (165)
343 1wty_A Hypothetical protein TT 24.1 2.3E+02 0.008 21.3 6.8 28 477-506 3-30 (119)
344 2w57_A Ferric uptake regulatio 23.7 1.9E+02 0.0066 22.9 6.4 62 414-476 4-66 (150)
345 2jul_A Calsenilin; EF-hand, ca 23.6 3.7E+02 0.013 23.5 11.3 27 220-246 229-255 (256)
346 3eyy_A Putative iron uptake re 23.6 2.6E+02 0.0088 22.0 7.1 34 100-133 33-66 (145)
347 3bge_A Predicted ATPase; struc 23.3 3.3E+02 0.011 22.9 9.3 37 510-546 20-56 (201)
348 2rfa_A Transient receptor pote 23.3 3.4E+02 0.012 22.9 9.9 25 332-356 158-182 (232)
349 3mkr_B Coatomer subunit alpha; 22.8 4.5E+02 0.015 24.2 10.1 49 498-561 199-247 (320)
350 3mwm_A ZUR, putative metal upt 22.8 1.3E+02 0.0045 23.6 5.2 45 89-134 19-63 (139)
351 2pnn_A Transient receptor pote 22.7 2E+02 0.0067 25.4 7.2 49 97-145 23-80 (273)
352 3mv2_A Coatomer subunit alpha; 21.9 4.7E+02 0.016 24.1 13.0 51 477-527 185-237 (325)
353 3ctd_A Putative ATPase, AAA fa 21.7 3.8E+02 0.013 22.8 9.6 55 509-563 47-106 (213)
354 2xig_A Ferric uptake regulatio 21.6 2.5E+02 0.0085 22.3 6.7 62 314-376 16-77 (150)
355 2b7e_A PRE-mRNA processing pro 21.5 1.1E+02 0.0038 19.8 3.5 29 272-300 3-31 (59)
356 2cos_A Serine/threonine protei 21.3 99 0.0034 19.5 3.1 36 553-593 11-48 (54)
357 3pvs_A Replication-associated 20.9 5.8E+02 0.02 24.8 15.2 162 407-587 166-350 (447)
358 3pvs_A Replication-associated 20.9 5.9E+02 0.02 24.8 12.6 29 218-248 192-220 (447)
359 3mwm_A ZUR, putative metal upt 20.3 1.9E+02 0.0063 22.7 5.6 46 190-235 18-63 (139)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-40 Score=353.53 Aligned_cols=475 Identities=9% Similarity=0.029 Sum_probs=378.6
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
++...|+.++..+.+ .|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+... ++++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALM-QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 578899999999999 89999999999999865 578899999999999999999999999998754 6889999999
Q ss_pred HHHHHhcCCHhHHHHHHhhcCCCC-------------------hhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh
Q 006437 161 MDVLFKIGRVDLGIKVLKETQLPN-------------------FLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVR 221 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 221 (645)
+.+|.+.|++++|+++|+++.+.+ ..+|+.++.+|.+.|++++|+++|++|.+.+. .+..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence 999999999999999999755443 67888999999999999999999999887642 2344
Q ss_pred hHHHHHHHHHhcCCHHH--HHHH-HHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437 222 MFEILLNCFCKMGRIAE--AYQL-LGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK 298 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (645)
.+..+...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55555544433322221 1111 444444445555667777788888889999999999888765 578888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCccc
Q 006437 299 GFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSL 378 (645)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 378 (645)
+|.+.|++++|..+|+++.+.+. .+..++..++.++.+.|+.++|.++++++.+..
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------- 369 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH----------------------- 369 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------------------
Confidence 99999999999999998887653 367788888889999999999999998887632
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 006437 379 LPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP 458 (645)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 458 (645)
..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|.++|+++.+.++
T Consensus 370 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 370 ----------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp ----------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred ----------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 2346667777788888888888888888887642 33567888888888888888888888888887765
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC--H
Q 006437 459 AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPN--A 532 (645)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~ 532 (645)
. +..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ .
T Consensus 439 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 439 G-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp T-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 4 67778888888888888888888888888764 456788888888888888888888888888764 55776 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.+|..++.+|.+.|++++|.++++++.+.++. +..+|..++.+|.+.|++++|.+.++++.+ ..|+..
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~ 584 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCh
Confidence 78888888888888888888888888876543 788888888888888888888888888885 455544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=330.57 Aligned_cols=479 Identities=11% Similarity=-0.009 Sum_probs=404.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006437 53 VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRG 132 (645)
Q Consensus 53 ~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 132 (645)
....+.+.++++.|+.+|+.+.... |+..++..++.++.+ .|++++|..+|+.+... +++..+++.++..|.+.
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCC-TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHH-cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHH
Confidence 3355668899999999999987542 577899999999999 89999999999988654 67899999999999999
Q ss_pred CChHHHHHHHHHHhhC---------------CCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC---CCChhhHHHHHHH
Q 006437 133 EMYGMVLEAFDEMGRF---------------GFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ---LPNFLSFNIALCN 194 (645)
Q Consensus 133 ~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~ 194 (645)
|++++|.++|+++... |.+.+..+|+.++.+|.+.|++++|+++|+++. +.+...+..+...
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN 243 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence 9999999999954322 234468999999999999999999999999986 3344555556554
Q ss_pred HHhcCCcchHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCH
Q 006437 195 LCKLNDVSNVK--DV-IGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRL 271 (645)
Q Consensus 195 ~~~~g~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 271 (645)
+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 44333222211 11 455555555556667888899999999999999999999875 57999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGL 351 (645)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (645)
++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++
T Consensus 322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999765 4478899999999999999999999999998653 447889999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006437 352 LELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV 431 (645)
Q Consensus 352 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 431 (645)
.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus 400 ~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 400 STMD---------------------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HHHC---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred HHhC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 8742 2356788899999999999999999999998864 44778899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHH
Q 006437 432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPLD--VVSYTVAIR 505 (645)
Q Consensus 432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~ 505 (645)
.++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 9999999999999999999999988766 7889999999999999999999999999876 55676 789999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 006437 506 GLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIF 578 (645)
Q Consensus 506 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (645)
+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+. +...+..+..+|.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 9999999999999999998854 348899999999999999999999999999987665 6777877776653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.6e-29 Score=255.15 Aligned_cols=186 Identities=15% Similarity=0.079 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCcCHHh
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR---------IAEAYQLLGLMITLGTSLSVNA 257 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 257 (645)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666666666666666666666666655432 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 337 (645)
|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 338 MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCL 372 (645)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 372 (645)
.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666665554
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5e-30 Score=261.48 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437 101 ETVRGIVGELARVGCVIKAQ-TFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 101 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 179 (645)
..+..+.+++.+.+...++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777665554 58889999999999999999999999999999999999999999887764332
Q ss_pred cCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHH
Q 006437 180 TQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWT 259 (645)
Q Consensus 180 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (645)
.+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 006437 260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKM 338 (645)
Q Consensus 260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 338 (645)
++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-25 Score=224.71 Aligned_cols=181 Identities=18% Similarity=0.114 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
.|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 34444444455555555555555544431 112444455555555555555555555555554433 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
+.|++++|.+.|+++.+.. +.+..+|+.+...+.+.|++++|...++++.+ ..| +..++..+...+.+.|++++|.
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555442 34455555555555555555555555555554 223 3455555555555555555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 006437 553 RLLQDVIDARIELDYHTSIRLTKFIFKF 580 (645)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (645)
+.++++.+..+. +...|..+...+...
T Consensus 360 ~~~~~a~~~~p~-~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 360 MHYKEAIRISPT-FADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCC-CHHHHHhHHHHHHHc
Confidence 555555553332 344555555444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.9e-25 Score=220.38 Aligned_cols=371 Identities=18% Similarity=0.135 Sum_probs=204.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKV 176 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 176 (645)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++++|++.
T Consensus 12 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666766666665553 3344555555566666666666666666666543 44566666666666666666666666
Q ss_pred HhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437 177 LKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITLGTS 252 (645)
Q Consensus 177 ~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (645)
|+++. +.+..+|..+..++.+.|++++|.+.|+++.+.+ |+ ...+..+...+...|++++|.+.|+.+.+.. +
T Consensus 90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 66543 3334456666666666666666666666665542 32 3344555555555666666666666665543 2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006437 253 LSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLI 332 (645)
Q Consensus 253 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 332 (645)
.+..+|..+...+...|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+... .+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence 234555556666666666666666666655432 12334444444555555555555555554444311 1233444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437 333 DCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV 412 (645)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (645)
..+.+.|++++|...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~-------------------------------------------------------------- 262 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRR-------------------------------------------------------------- 262 (388)
T ss_dssp HHHHHTTCHHHHHHHHHH--------------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHH--------------------------------------------------------------
Confidence 444444444444444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
+.+.. +.+..++..+...+.+.|++++|...++++.+..+. +..++..+...+.+.|++++|.+.++++.+..
T Consensus 263 -----al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 263 -----AIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp -----HHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred -----HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44431 112334444444555555555555555555444332 44555556666666666666666666665542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437 493 YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER 546 (645)
Q Consensus 493 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 546 (645)
+.+..++..+...|.+.|++++|...++++.+ +.| +...|..+...+...|
T Consensus 336 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 336 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 33455666666666666666666666666665 344 4556666666555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-23 Score=216.90 Aligned_cols=256 Identities=11% Similarity=0.005 Sum_probs=172.6
Q ss_pred cCChhHHHHHHHHHHh-----CCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437 303 AKMFSIAFSFLDMLES-----EGHA--------PDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLST 369 (645)
Q Consensus 303 ~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 369 (645)
.|++++|...|+++.+ ..-. .+...+..+...+...|++++|...++++.+... +...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHH
Confidence 6788888888888776 3111 2345667777888888999999999988887542 26666667777
Q ss_pred HHhcCCcccHHHHHhc-CCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 006437 370 VCLSGRFSLLPKLVCG-LEVE-ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAI 447 (645)
Q Consensus 370 ~~~~~~~~~a~~~~~~-~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 447 (645)
+...|++++|.+.++. .... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776632 1222 245567777777777777777777777777653 224556666677777777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHh---cCCHHHHHHH
Q 006437 448 NVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLE---GGRTEEAYIL 519 (645)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~ 519 (645)
..++.+.+..+. +...+..+...+.+.|++++|...++++.+.... ++ ...|..+...+.. .|++++|...
T Consensus 359 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 359 TLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 777777766544 4556667777777777777777777776654200 11 2267777777777 7777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 520 YSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 520 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
++++.+.. +.+..++..+...+...|++++|.+.++++.+..+
T Consensus 438 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 438 LEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 77776632 22566667777777777777777777777776543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-22 Score=211.31 Aligned_cols=440 Identities=10% Similarity=-0.060 Sum_probs=240.3
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006437 85 SFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVL 164 (645)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 164 (645)
.+......+.+ .|++++|+..|+++.... |+..++..+..+|...|++++|...++++.+.+ +.+..++..+..+|
T Consensus 8 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFR-NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHH-TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 34444455555 566666666666666553 456666666666666666666666666666543 34455666666666
Q ss_pred HhcCCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006437 165 FKIGRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQ 241 (645)
Q Consensus 165 ~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 241 (645)
...|++++|...|+++. +++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 66666666666665543 222223333333222222112222222111111100100000000000000000000000
Q ss_pred HHHHHHHcCC---------CcCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhchHHH
Q 006437 242 LLGLMITLGT---------SLSVNAWTVLIDGFRR---LRRLDMAGYLWEKMVQ-----NGC--------SPNVVTYTSL 296 (645)
Q Consensus 242 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l 296 (645)
+...+..... +.+...+......+.. .|++++|.++|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0000000000 0112222222222222 4455555555555444 100 1122334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437 297 IKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF 376 (645)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 376 (645)
...+...|++++|...++++.+... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 4445555555555555555444322 24444444555555555555555555544431 22334444455555555555
Q ss_pred ccHHHHHhcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006437 377 SLLPKLVCGL-E-VEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIV 454 (645)
Q Consensus 377 ~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 454 (645)
++|...++.. . .+.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555554221 1 12356788889999999999999999999998763 3356778888999999999999999999998
Q ss_pred HcCCCC-c----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437 455 MNNPAV-N----AHVHTAIVDRLIE---AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526 (645)
Q Consensus 455 ~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 526 (645)
...+.. + ...+..+..++.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD- 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 765432 1 3478899999999 999999999999998875 45688899999999999999999999999998
Q ss_pred CCCCCHHHH
Q 006437 527 AVPPNAYTY 535 (645)
Q Consensus 527 ~~~p~~~~~ 535 (645)
+.|+....
T Consensus 478 -~~~~~~~~ 485 (514)
T 2gw1_A 478 -LARTMEEK 485 (514)
T ss_dssp -HCSSHHHH
T ss_pred -hccccHHH
Confidence 56765433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.8e-21 Score=194.24 Aligned_cols=144 Identities=12% Similarity=0.153 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHH------------HHHHHcCCCHHHHHHHHHHHHHcC
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL------------LRGLCGARKIDEAINVYQGIVMNN 457 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 457 (645)
+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+ ...+...|++++|...++.+....
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4555666666677777777777777766653 233 2222222 566777777777777777777755
Q ss_pred CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 006437 458 PAVN---AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY 533 (645)
Q Consensus 458 ~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 533 (645)
+... ...+..+..++.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+ +.| +..
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 4411 3356677777778888888888888777653 34677777788888888888888888888776 455 345
Q ss_pred HHHHHH
Q 006437 534 TYRVML 539 (645)
Q Consensus 534 ~~~~ll 539 (645)
.+..+.
T Consensus 365 ~~~~l~ 370 (450)
T 2y4t_A 365 IREGLE 370 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.1e-20 Score=191.72 Aligned_cols=331 Identities=12% Similarity=0.057 Sum_probs=235.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHH
Q 006437 219 NVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIK 298 (645)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (645)
+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..+|...|++++|.+.|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445555555555555555555555555432 2245555555555555555555555555555442 223445555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHH------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006437 299 GFMEAKMFSIAFSFLDMLESEGHAPDL----VFHNV------------LIDCLSKMGSYDDALDVYDGLLELKLVPDSYT 362 (645)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (645)
.|...|++++|...|+++.+.. |+. ..+.. +...+...|++++|...|+++.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 173 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------- 173 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 5555555555555555555432 221 22222 3445777888899988888887642
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006437 363 FCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK 442 (645)
Q Consensus 363 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 442 (645)
+.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 174 --------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 174 --------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred --------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 2355677888888999999999999999988753 4467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHH
Q 006437 443 IDEAINVYQGIVMNNPAVNAHVHTAI------------VDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIR 505 (645)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 505 (645)
+++|...++.+....+. +...+..+ ...+.+.|++++|...|+++.+.. |+ ...|..+..
T Consensus 227 ~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 99999999999987665 44445444 889999999999999999998864 44 447888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH--------
Q 006437 506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF-------- 576 (645)
Q Consensus 506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------- 576 (645)
.+.+.|++++|+..++++.+. .| +..++..+..+|...|++++|.+.++++.+..+. +...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhccc
Confidence 999999999999999999873 45 7899999999999999999999999999986654 67777777743
Q ss_pred ----HHhcC-----ChhHHHHHHHHH
Q 006437 577 ----IFKFH-----SSSSAVNQLVEM 593 (645)
Q Consensus 577 ----~~~~g-----~~~~A~~~~~~m 593 (645)
|...| +.+++.+.++++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33344 556777777763
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1e-20 Score=198.83 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=138.6
Q ss_pred CChhHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcc
Q 006437 304 KMFSIAFSFLDMLESEGHAPD------LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFS 377 (645)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 377 (645)
+++++|..+++++.+...... ..++..+...+...|++++|...++++.+.. |+...+.
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~------------- 280 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI------------- 280 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHH-------------
Confidence 467777777777776532110 2245566677888889999999998888742 3334444
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 006437 378 LLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN 457 (645)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 457 (645)
.+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++....
T Consensus 281 -------------------~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 281 -------------------FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp -------------------HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------------HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44444455555555555555555432 2234445555555555555555555555555554
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCH
Q 006437 458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA-----VPPNA 532 (645)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~ 532 (645)
+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .....
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 43 33445555555555666666666665555543 3344555555555555666666666555554311 00111
Q ss_pred HHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 533 YTYRVMLLSFCKE----------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 533 ~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
..+......+... |++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++++.+
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2233333444444 5566666666655554332 455555555666666666666666665554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.9e-20 Score=196.90 Aligned_cols=437 Identities=10% Similarity=-0.032 Sum_probs=307.7
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM 161 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (645)
.+..|..+...+.+ .|+++.|...|+++.... +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFT-AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHH-TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 34566777778888 799999999999998875 4578888899999999999999999999998775 55788888999
Q ss_pred HHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHH
Q 006437 162 DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGF--YPNVRMFEILLNCFCKMGRIAEA 239 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a 239 (645)
.++...|++++|+..|+.+. .++...+..+..+...+....|...++.+..... .+........+..+....+.+.+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999997443 2222223334455555666788888888855310 11111122334445555565555
Q ss_pred HHHHHHHHHcCCCcCH-HhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC--------hhchHHHHHHHHh
Q 006437 240 YQLLGLMITLGTSLSV-NAWTVLIDGFRR--------LRRLDMAGYLWEKMVQNGCSPN--------VVTYTSLIKGFME 302 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~li~~~~~ 302 (645)
...+..... ..+.. .....+...+.. .|++++|..+++++.+.. |+ ..++..+...+..
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 444433221 11111 133333333322 247888999999888643 43 2246666677888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHH
Q 006437 303 AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKL 382 (645)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 382 (645)
.|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+..
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 306 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--------------------------- 306 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---------------------------
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---------------------------
Confidence 89999999999998886 4557788888888999999999999999888742
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 006437 383 VCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA 462 (645)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (645)
+.+...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+..+. +.
T Consensus 307 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 378 (537)
T 3fp2_A 307 ------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LP 378 (537)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CT
T ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 2245567777788888888999999988888753 234567788888888999999999999998887665 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHhhCC
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-----PLDVVSYTVAIRGLLEG----------GRTEEAYILYSQMKHIA 527 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 527 (645)
..+..+...+...|++++|.+.++++.+... ......+..+...+.+. |++++|...++++.+..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 6788888999999999999999988876530 01122244455667777 99999999999988742
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
+.+..++..+...|...|++++|.+.++++.+....
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 336788889999999999999999999999886544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.6e-17 Score=164.49 Aligned_cols=315 Identities=12% Similarity=0.049 Sum_probs=211.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006437 257 AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLS 336 (645)
Q Consensus 257 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 336 (645)
.+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 34444444444555555555555444332 12334444444555555555555555555444321 13344555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437 337 KMGSYDDALDVYDGLLELKLVP----DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV 412 (645)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (645)
..|++++|...++++.+. .| +...+..+...+. ...+..+...+...|++++|+
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--------------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE--------------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH--------------------HHHHHHHHHHHHHccCHHHHH
Confidence 555555555555555542 22 1111111111000 112333456788899999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
..++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999988763 346777888888999999999999999999887665 77888899999999999999999999998764
Q ss_pred CCCChhhHHH------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 006437 493 YPLDVVSYTV------------AIRGLLEGGRTEEAYILYSQMKHIAVPPN-A----YTYRVMLLSFCKERNIKMVKRLL 555 (645)
Q Consensus 493 ~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~ 555 (645)
+.+...+.. +...+.+.|++++|...++++.+. .|+ . ..+..+...+...|++++|.+.+
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 334444432 366688999999999999998873 454 3 23556778889999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 556 QDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+++.+..+. ++..+..++.++.+.|++++|.+.++++.+ ..|+..
T Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 999886544 788999999999999999999999999984 567655
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.4e-17 Score=163.24 Aligned_cols=326 Identities=14% Similarity=0.073 Sum_probs=207.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFR 266 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (645)
.+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444445555555555555555554432 1234445555555555555555555555554432 113344455555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 006437 267 RLRRLDMAGYLWEKMVQNGCSP----NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYD 342 (645)
Q Consensus 267 ~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 342 (645)
..|++++|.+.|++..+. .| +...+..+...+. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555554432 12 1111111111000 011223357788899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437 343 DALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG 422 (645)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 422 (645)
+|...++++.+.. +.+...+..+...+...|++++|+..+++..+..
T Consensus 138 ~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 138 AAITFLDKILEVC---------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184 (359)
T ss_dssp HHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC---------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999887742 2234556667777778888888888888877653
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHT------------AIVDRLIEAGRCHKAIQLFRRAIV 490 (645)
Q Consensus 423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~ 490 (645)
+.+...+..+...+...|++++|...++...+..+. +...+. .+...+.+.|++++|...++++.+
T Consensus 185 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 185 -SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667777777788888888888888888776654 223222 236678889999999999999887
Q ss_pred CCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437 491 EKYPLDV----VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 491 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 565 (645)
.. +.+. ..+..+...+.+.|++++|+..+++..+. .| +..++..+...+...|++++|.+.++++.+..+.
T Consensus 263 ~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~- 338 (359)
T 3ieg_A 263 TE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN- 338 (359)
T ss_dssp HC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred cC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 64 2233 23556778889999999999999999874 45 7888999999999999999999999999886654
Q ss_pred CHHHHHHHHHHHH
Q 006437 566 DYHTSIRLTKFIF 578 (645)
Q Consensus 566 ~~~~~~~l~~~~~ 578 (645)
+...+..+..+..
T Consensus 339 ~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 339 DQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5666666666544
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=4.4e-16 Score=161.03 Aligned_cols=320 Identities=15% Similarity=0.107 Sum_probs=209.3
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHh----cC
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRR----LR 269 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 269 (645)
.++.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+...+.| +...+..+...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 445555555555554443 34444555555555 556666666666665544 34455555555555 56
Q ss_pred CHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCH
Q 006437 270 RLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----AKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK----MGSY 341 (645)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 341 (645)
++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 6666666666666543 45555566666665 566677777776666653 34455555555554 5667
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 006437 342 DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCK----AGFPNQAVKLYNT 417 (645)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~ 417 (645)
++|...|++..+.+ +...+..+...|.. .+++++|+..|++
T Consensus 240 ~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG-----------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHHHHTTT-----------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 77777777666542 22233334444444 6778888888887
Q ss_pred HHHCCCCCCHhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 006437 418 MLDKGFTPDNYSFVGLLRGLCGA-----RKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG---RCHKAIQLFRRAI 489 (645)
Q Consensus 418 m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~ 489 (645)
..+.| +...+..+...+... ++.++|...+++..+.+ +...+..+...|...| ++++|.+.|++..
T Consensus 285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 77654 444555666666665 78888888888887765 4456677777777756 7888888888888
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 006437 490 VEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 490 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 561 (645)
+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|..++++..+.
T Consensus 359 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 359 AKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 77888888888888 788999999999888754 56778888888887 78999999999988886
Q ss_pred CCC-c-CHHHHHHHHHH
Q 006437 562 RIE-L-DYHTSIRLTKF 576 (645)
Q Consensus 562 ~~~-~-~~~~~~~l~~~ 576 (645)
+.. | ++.....+...
T Consensus 433 ~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 433 DMNLFGTENRNITEKKL 449 (490)
T ss_dssp HCCHHHHHHHHHHHTTS
T ss_pred CCCCcCCHHHHHHHHhc
Confidence 643 1 33344444433
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=7.8e-16 Score=159.12 Aligned_cols=356 Identities=10% Similarity=0.001 Sum_probs=260.9
Q ss_pred CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCc
Q 006437 182 LPNFLSFNIALCNLCK----LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSL 253 (645)
Q Consensus 182 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 253 (645)
..+...+..+...|.. .+++++|++.|++..+.| +...+..+...|.. .++.++|.+.|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4455555666555555 566666666666666543 44556666666666 666666666666666544
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 006437 254 SVNAWTVLIDGFRR----LRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFME----AKMFSIAFSFLDMLESEGHAPDL 325 (645)
Q Consensus 254 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 325 (645)
+...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555556666655 566666666666666543 44455555555555 556666666666666553 44
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHH
Q 006437 326 VFHNVLIDCLSK----MGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSY 401 (645)
Q Consensus 326 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 401 (645)
..+..+...|.. .++.++|.+.|++..+.+ +...+..+...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~ 228 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------------------------------DELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHH
Confidence 555555556655 566666666666665532 34455556666
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 402 FCK----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 402 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
|.. .+++++|...|++..+.| +...+..+...+.. .++.++|...|++..+.+ +...+..+...|.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 665 789999999999988875 45566667777776 899999999999998765 5567778888888
Q ss_pred hc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 006437 474 EA-----GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK- 544 (645)
Q Consensus 474 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 544 (645)
.. +++++|...|++..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 87 89999999999999876 6778888888888866 8899999999999853 67888899999988
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC
Q 006437 545 ---ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLGLI 599 (645)
Q Consensus 545 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 599 (645)
.+++++|.+++++..+.+ ++..+..|...|.+ .++.++|.+.|++..+.|..
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 899999999999999875 57888899999998 89999999999999988755
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=4e-15 Score=160.66 Aligned_cols=416 Identities=15% Similarity=0.118 Sum_probs=310.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006437 52 IVHSTLLNCPSDLIALSFFIWCAKQRD-YFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYW 130 (645)
Q Consensus 52 ~~~~~l~~~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 130 (645)
...+.+...+.+.+|+++++.+...+. |..+....+.++....+ . +.....+..++.... + ...+...|.
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk-a-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK-A-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH-h-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 344667789999999999999876544 56677888888877777 3 556666666655422 1 344777888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 006437 131 RGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGM 210 (645)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 210 (645)
..|.+++|..+|++.. -.....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|++.|.+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999853 1222233333 37789999999999774 467788999999999999999999965
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 006437 211 MVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV 290 (645)
Q Consensus 211 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 290 (645)
. -|...|..++..+.+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 3 477788999999999999999999999888764 34444556999999999998655443 2 3566
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
..|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 77888999999999999999999985 37899999999999999999999876 3568888899999
Q ss_pred HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--CCCHHHHHH
Q 006437 371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG--ARKIDEAIN 448 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~ 448 (645)
...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ .+++.++.+
T Consensus 1261 ve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999887754 44456677799999999999999999998776543 2233455555555554 445555666
Q ss_pred HHHHHHHcCC----CCcHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437 449 VYQGIVMNNP----AVNAHVHTAIVDRLIEAGRCHKAIQL-------------FRRAIVEKYPLDVVSYTVAIRGLLEGG 511 (645)
Q Consensus 449 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~g 511 (645)
.|..-..... --+...|..++-.|.+.|+++.|... |++.+.. ..|+..|...+.-|...+
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 5553322110 12567789999999999999998832 3332222 346777777777777665
Q ss_pred ---------------CHHHHHHHHH
Q 006437 512 ---------------RTEEAYILYS 521 (645)
Q Consensus 512 ---------------~~~~A~~~~~ 521 (645)
+++++.++++
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHHHH
Confidence 6677766666
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.1e-17 Score=158.85 Aligned_cols=285 Identities=13% Similarity=0.001 Sum_probs=169.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006437 254 SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLID 333 (645)
Q Consensus 254 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 333 (645)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 44455555555666666666666666665442 22344455555566666666666666666655421 23445555566
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 006437 334 CLSKMG-SYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV 412 (645)
Q Consensus 334 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (645)
.+...| ++++|...|+++.+.. | .+...|..+...+...|++++|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE--K-------------------------------TYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC--T-------------------------------TCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC--C-------------------------------ccHHHHHHHHHHHHHccCHHHHH
Confidence 666666 6666666666665431 1 12334555555666666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 413 KLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
..+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 6666666542 123344555666666666666666666666665544 45666666667777777777777776665431
Q ss_pred --------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 493 --------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 493 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
.+.+...|..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 12235566777777777777777777777776632 225566777777777777777777777776665433
Q ss_pred cCHHHHHHHHHHH
Q 006437 565 LDYHTSIRLTKFI 577 (645)
Q Consensus 565 ~~~~~~~~l~~~~ 577 (645)
+...+..+..++
T Consensus 303 -~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 -DTFSVTMLGHCI 314 (330)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -chHHHHHHHHHH
Confidence 566666666666
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=5.8e-16 Score=161.82 Aligned_cols=428 Identities=9% Similarity=0.033 Sum_probs=275.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCC
Q 006437 107 VGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPN 184 (645)
Q Consensus 107 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~ 184 (645)
|++..+.. +-+...+..++. +.+.|+++.|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.. .|+
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444443 447788888888 477899999999999998763 5677889999999999999999999999876 456
Q ss_pred hhhHHHHHHHH-HhcCCcchHHH----HHHHHHH-CCCCC-CHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 006437 185 FLSFNIALCNL-CKLNDVSNVKD----VIGMMVR-KGFYP-NVRMFEILLNCFCK---------MGRIAEAYQLLGLMIT 248 (645)
Q Consensus 185 ~~~~~~ll~~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 248 (645)
...|...+... ...|+.++|.+ +|+.... .|..| +...|...+..... .|+++.|..+|+...+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666666433 34577777765 6665543 35443 45566666665544 5677778888877776
Q ss_pred cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHH------hCC--
Q 006437 249 LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE------SEG-- 320 (645)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~-- 320 (645)
.........|..........+. ..+. .++. ...+++..|..+++.+. +..
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2111111222222111100000 0000 1110 01233445554444421 111
Q ss_pred -CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHH
Q 006437 321 -HAPD--------LVFHNVLIDCLSKM----GSY----DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 321 -~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 383 (645)
+.|+ ...|...+...... ++. +.+..+|++.....
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------------------------- 268 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------------------------- 268 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC----------------------------
Confidence 1222 12222222111111 111 24444555544421
Q ss_pred hcCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437 384 CGLEVEADLVVYNALLSYFCK-------AGFPN-------QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV 449 (645)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 449 (645)
+.+...|......+.+ .|+++ +|..+|++..+.-.+-+...+..++..+.+.|++++|..+
T Consensus 269 -----p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 269 -----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2245556666655554 67776 8899999887632233567788888888889999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhhCCC
Q 006437 450 YQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LLEGGRTEEAYILYSQMKHIAV 528 (645)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~ 528 (645)
|+++++..+......|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+.
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-- 420 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-- 420 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence 9999986554223578888888899999999999999998763 2233333332222 33689999999999998873
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 529 PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-EL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 529 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.| +...|..++..+.+.|+.++|..+|+++...+. .| ....|...+....+.|+.+.+.++.+++.+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45 678899999999999999999999999998643 22 355888888988999999999999999875
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.2e-15 Score=158.29 Aligned_cols=422 Identities=11% Similarity=0.091 Sum_probs=312.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHH
Q 006437 117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG--FTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCN 194 (645)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 194 (645)
.+++-....+++|...|++.+|+++++++.-.+ +..+....+.|+....+. +..+..+..++...-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 355666778899999999999999999998432 123456667777777766 4455666555544323 4457777
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437 195 LCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA 274 (645)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 274 (645)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 8889999999999998521 1222233322 6788999999988652 577899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 275 GYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLEL 354 (645)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (645)
.+.|.+. .|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++..... +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999653 477888899999999999999999999887764 33333445888999999888644432 2
Q ss_pred CCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 355 KLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLL 434 (645)
Q Consensus 355 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 434 (645)
.++...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 345667778889999999999999999763 47999999999999999999999876 3568888899
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--C
Q 006437 435 RGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG--R 512 (645)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 512 (645)
.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++..+... +-+...|+-+...|++.. +
T Consensus 1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 999999999999886653 33366677889999999999999999999887665 446778888888887753 5
Q ss_pred HHHHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCcCHHHHHHHHH
Q 006437 513 TEEAYILYSQMKHIAVPP------NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA-----------RIELDYHTSIRLTK 575 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~ 575 (645)
..++.++|..-.. ++| +...|.-+.-.|.+.|+++.|...+-+-... .-..++..|...+.
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 5556666554332 333 5677889999999999999988432211100 11236777777777
Q ss_pred HHHhcC---------------ChhHHHHHHH
Q 006437 576 FIFKFH---------------SSSSAVNQLV 591 (645)
Q Consensus 576 ~~~~~g---------------~~~~A~~~~~ 591 (645)
.|...+ +.+.+.++++
T Consensus 1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777666 6666666665
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-16 Score=156.00 Aligned_cols=293 Identities=11% Similarity=0.032 Sum_probs=199.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437 217 YPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL 296 (645)
Q Consensus 217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (645)
..+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3445566666667777777777777777776653 2244555566666777777777777777776542 2355666677
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 297 IKGFMEAK-MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR 375 (645)
Q Consensus 297 i~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 375 (645)
...+...| ++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. |
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~----------------- 156 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--K----------------- 156 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--T-----------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--c-----------------
Confidence 77777777 77777777777766532 245566677777777777777777777776632 1
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006437 376 FSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVM 455 (645)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 455 (645)
.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++..
T Consensus 157 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 157 --------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp --------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 122334445666677777777777777776653 33456667777777777777777777777765
Q ss_pred cCC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437 456 NNP--------AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 456 ~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 527 (645)
... .....++..+..++.+.|++++|...++++.+.. +.+...|..+...+.+.|++++|...++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 298 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG-- 298 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence 421 2245677888888888899999999988888764 44677888888899999999999999998887
Q ss_pred CCC-CHHHHHHHHHHH-HhcCCHH
Q 006437 528 VPP-NAYTYRVMLLSF-CKERNIK 549 (645)
Q Consensus 528 ~~p-~~~~~~~ll~~~-~~~g~~~ 549 (645)
+.| +...+..+..++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 456 567777777777 3445443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.5e-15 Score=158.66 Aligned_cols=423 Identities=11% Similarity=0.063 Sum_probs=270.6
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 006437 70 FIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFG 149 (645)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 149 (645)
|+......+ .+...|..++.. .+ .|+++.|..+|+++.... +-+...+...+..+.+.|+++.|..+|+++.+..
T Consensus 2 le~al~~~P--~~~~~w~~l~~~-~~-~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 2 AEKKLEENP--YDLDAWSILIRE-AQ-NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHH-HH-SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred hhhHhhhCC--CCHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 344444333 489999999984 66 799999999999998864 5678889999999999999999999999999874
Q ss_pred CCCCHHhHHHHHHHH-HhcCCHhHHHH----HHhhcC------CCChhhHHHHHHHHHh---------cCCcchHHHHHH
Q 006437 150 FTPNTFARNIVMDVL-FKIGRVDLGIK----VLKETQ------LPNFLSFNIALCNLCK---------LNDVSNVKDVIG 209 (645)
Q Consensus 150 ~~~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~ 209 (645)
|+...|..++... ...|+.+.|.+ +|++.. .++...|...+..... .|+++.|..+|+
T Consensus 77 --p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 --LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 6888888777644 45677777665 666542 3455677777766544 688999999999
Q ss_pred HHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 006437 210 MMVRKGFYPNV---RMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV---- 282 (645)
Q Consensus 210 ~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---- 282 (645)
+.++. |+. ..|..........|. ..+..+ +. .+.++++.|..++..+.
T Consensus 155 ~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 155 RGCVN---PMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHH
Confidence 99873 332 233322221111110 011111 10 12234555555555422
Q ss_pred --HcC---CCCC--------hhchHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 006437 283 --QNG---CSPN--------VVTYTSLIKGFMEA----KMF----SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK---- 337 (645)
Q Consensus 283 --~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 337 (645)
+.. ++|+ ...|...+...... ++. +++..+|++..... +.+...|......+.+
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 111 2232 12343333322221 122 36667777776642 2345566666666554
Q ss_pred ---cCCHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 006437 338 ---MGSYD-------DALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF 407 (645)
Q Consensus 338 ---~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (645)
.|+++ +|..+|++..+. +.| .+...|..++..+.+.|+
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-------------------------------~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAIST-LLK-------------------------------KNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-------------------------------SCHHHHHHHHHHHHHTTC
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHH-hCc-------------------------------ccHHHHHHHHHHHHhcCC
Confidence 57765 677777776641 111 235566666777777788
Q ss_pred hHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCCHHHHHHH
Q 006437 408 PNQAVKLYNTMLDKGFTPDN--YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR-LIEAGRCHKAIQL 484 (645)
Q Consensus 408 ~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~ 484 (645)
+++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+..+. +...+...+.. +...|+.++|..+
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence 88888888887774 3432 36677777777778888888888887766433 22333222222 3357888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA-VPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
|++.++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88887653 3467788888888888888888888888887642 2232 446777777777788888888888888764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=6.6e-18 Score=163.62 Aligned_cols=376 Identities=15% Similarity=0.122 Sum_probs=154.5
Q ss_pred hcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 166 KIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGL 245 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (645)
+.|+.++|.+.++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456667777777766444 3666777777777777777777643 24555677777777777777777776665
Q ss_pred HHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 006437 246 MITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDL 325 (645)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (645)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5553 3345666777777777777777666663 256667777777777777777777777755
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437 326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA 405 (645)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (645)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHC
Confidence 35677777777777777777777766 25667777777777777777776655544444433 44577888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHhcCC
Q 006437 406 GFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA--RKIDEAINVYQGIVMNNPAV------NAHVHTAIVDRLIEAGR 477 (645)
Q Consensus 406 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 477 (645)
|++++|+.+++...... +-....|+.+..++++- +++.+..+.|..- .++++ +...|..++-.|..-++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 88888888888876543 33455566665555543 3333444433311 12222 45667888888888888
Q ss_pred HHHHHHHHHHHHHCC-C-------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437 478 CHKAIQLFRRAIVEK-Y-------------PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC 543 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~-~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 543 (645)
++.|.... .+.. . ..+...|-..+.-|... + ..++.-+.......+ |. +-.+..+.
T Consensus 298 ~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~-p~~l~~ll~~l~~~l--d~---~r~v~~~~ 367 (449)
T 1b89_A 298 YDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-K-PLLLNDLLMVLSPRL--DH---TRAVNYFS 367 (449)
T ss_dssp HHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-C-GGGHHHHHHHHGGGC--CH---HHHHHHHH
T ss_pred HHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHhcc--Cc---HHHHHHHH
Confidence 88887643 2221 0 12344455555544421 1 111222222211111 11 23344556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006437 544 KERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLV 591 (645)
Q Consensus 544 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 591 (645)
+.|....+..++..++..+ ...+-.+|-+.|....+++.-..-++
T Consensus 368 ~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 368 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6677777777776666544 35555666677777777765444433
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=6.9e-17 Score=160.64 Aligned_cols=289 Identities=14% Similarity=0.070 Sum_probs=198.8
Q ss_pred cCCHHHHHH-HHHHHHHcCC-CC--ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437 268 LRRLDMAGY-LWEKMVQNGC-SP--NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD 343 (645)
Q Consensus 268 ~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 343 (645)
.|++++|.+ .+++...... .| +...+..+...+...|++++|...|+++.+... .+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332110 01 234455666666666666666666666665432 245556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006437 344 ALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF 423 (645)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 423 (645)
|...|+++.+.. +.+...+..+...|...|++++|+..++++.+...
T Consensus 117 A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 117 AISALRRCLELK---------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 666666665532 11344455556666666666666666666665431
Q ss_pred CCCHhhHHH---------------HHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 424 TPDNYSFVG---------------LLRGLCGARKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRR 487 (645)
Q Consensus 424 ~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (645)
. +...+.. .+..+...|++++|...++++.+..+.. +..++..+...|.+.|++++|...+++
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 1111110 2333347899999999999999886653 578889999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--
Q 006437 488 AIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-- 565 (645)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 565 (645)
+.+.. +.+..+|..+...+...|++++|+..++++.+.. +.+..++..+...|.+.|++++|...++++.+..+..
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 98864 4568899999999999999999999999998742 3368899999999999999999999999998754331
Q ss_pred --------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 566 --------DYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 566 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
....|..+..+|.+.|+.++|..++++.
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 2788999999999999999999887643
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.1e-17 Score=158.11 Aligned_cols=290 Identities=9% Similarity=0.047 Sum_probs=126.4
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006437 53 VHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRG 132 (645)
Q Consensus 53 ~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 132 (645)
+..++...++.+.|.++++.+ +++.+|..+..++.+ .|++++|++.|.+. ++..+|..++.++...
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~-~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQ-KGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHH-cCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 445666888999999999888 234599999999999 89999999999652 5777999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437 133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV 212 (645)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 212 (645)
|++++|+..++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999999988777764 56678899999999999999999988864 77789999999999999999999999976
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 006437 213 RKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVT 292 (645)
Q Consensus 213 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 292 (645)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ....-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhh
Confidence 47999999999999999999999988 278999999999999999999966655433 23333
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHhhHHH
Q 006437 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE-LKLVP------DSYTFCS 365 (645)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~ 365 (645)
...++..|.+.|.+++|..+++...... ......|+-+.-.|++- ++++..+.++.... .+++| +...|..
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5578899999999999999999987653 33455666666666654 33333333332221 22222 3455666
Q ss_pred HHHHHHhcCCcccHHHHH
Q 006437 366 LLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 366 ll~~~~~~~~~~~a~~~~ 383 (645)
++-.|..-++++.|...+
T Consensus 288 ~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHH
Confidence 666666677766665554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1.3e-16 Score=158.66 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=98.5
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAI 482 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 482 (645)
..|++++|+..++++.+.... ++..++..+...+...|++++|...++++....+. +...+..+..++.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 555666666666666554211 13555666666666666666666666666665444 4556667777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-C-----------HHHHHHHHHHHHhcCCHHH
Q 006437 483 QLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-N-----------AYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~-----------~~~~~~ll~~~~~~g~~~~ 550 (645)
..|+++.+.. +.+...+..+..+|.+.|++++|...++++.+. .| + ..+|..+..+|...|++++
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 7777776653 345667777777777777777777777776652 22 1 5677777778888888887
Q ss_pred HHHHHHHH
Q 006437 551 VKRLLQDV 558 (645)
Q Consensus 551 a~~~~~~~ 558 (645)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 77776543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5e-16 Score=154.21 Aligned_cols=263 Identities=12% Similarity=0.087 Sum_probs=186.3
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
..+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 129 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------- 129 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 3455555556666666666666666555421 245556666666666666666666666665531
Q ss_pred HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----------HhhHHHHHHHHHc
Q 006437 371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-----------NYSFVGLLRGLCG 439 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~ 439 (645)
+.+...|..+...|...|++++|+..++++.+.. |+ ...+..+...+..
T Consensus 130 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 130 ------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------C
T ss_pred ------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhh
Confidence 1134445555666666666666666666665532 22 2233445778888
Q ss_pred CCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
.|++++|...++++....+.. +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|+.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999886652 67888999999999999999999999998875 5578899999999999999999999
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------cCHHHHHHHHHHHHhcCChhHH
Q 006437 519 LYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE-----------LDYHTSIRLTKFIFKFHSSSSA 586 (645)
Q Consensus 519 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A 586 (645)
.++++.+ ..| +..++..+..+|...|++++|...++++.+..+. .+...|..+..++...|+.+.|
T Consensus 269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999988 445 5889999999999999999999999999864322 1357889999999999999888
Q ss_pred HHHHHH
Q 006437 587 VNQLVE 592 (645)
Q Consensus 587 ~~~~~~ 592 (645)
.+..++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877654
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.8e-15 Score=143.90 Aligned_cols=250 Identities=13% Similarity=0.070 Sum_probs=113.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh--hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006437 266 RRLRRLDMAGYLWEKMVQNGCSPNV--VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDD 343 (645)
Q Consensus 266 ~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 343 (645)
...|+++.|+..++..... .|+. .....+.++|...|+++.|...++. .-.|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3455566665555544322 1221 2334445566666666666554433 123445555556666666666666
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006437 344 ALDVYDGLLELKLVPDS-YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG 422 (645)
Q Consensus 344 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 422 (645)
|++.++++...+..|+. ..+..+...+...|++++|.+.++. ..+...+..+...+.+.|++++|.+.|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 66666666654433322 2222222333333333333333322 1233444444455555555555555555554432
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006437 423 FTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV 502 (645)
Q Consensus 423 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 502 (645)
|+.. ...+. ..++..+...|++++|..+|+++.+.. |.+...|+.
T Consensus 161 --p~~~-~~~l~-------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~ 205 (291)
T 3mkr_A 161 --EDAT-LTQLA-------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNG 205 (291)
T ss_dssp --TTCH-HHHHH-------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred --cCcH-HHHHH-------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 2221 11111 112222223344555555555554442 334445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKM-VKRLLQDVIDA 561 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 561 (645)
+..++.+.|++++|+..+++..+ ..| +..++..++..+...|+.++ +.++++++.+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55555555555555555555444 223 34455555555555555433 34455555443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.3e-15 Score=148.61 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=132.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 516 (645)
+...|++++|...++++.+..+. +...+..+...+.+.|++++|.+.++++.+.. +.+...|..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 66778899999999999887765 77888899999999999999999999998764 45688899999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCChhH
Q 006437 517 YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-----------DYHTSIRLTKFIFKFHSSSS 585 (645)
Q Consensus 517 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 585 (645)
...++++.+.. +.+..++..+...+...|++++|.+.++++.+..+.. +...+..+..++.+.|+.++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999988742 3368889999999999999999999999998754432 47788999999999999999
Q ss_pred HHHHHHHHH
Q 006437 586 AVNQLVEMC 594 (645)
Q Consensus 586 A~~~~~~m~ 594 (645)
|.+++++..
T Consensus 305 A~~~~~~~l 313 (327)
T 3cv0_A 305 VELTYAQNV 313 (327)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHHHHH
Confidence 999887543
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=176.25 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=79.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLMIT---LGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSL 296 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (645)
..||+++|++||+.|++++|.++|+.|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44666777777777777777777666542 356677777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437 297 IKGFMEAKMF-SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337 (645)
Q Consensus 297 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 337 (645)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777776653 5666777777777777777777766654433
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=6.1e-16 Score=153.58 Aligned_cols=272 Identities=11% Similarity=0.015 Sum_probs=189.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006437 256 NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCL 335 (645)
Q Consensus 256 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 335 (645)
..+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666655442 2345556666666666666666666666665542 12455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006437 336 SKMGSYDDALDVYDGLLELKLVPDSY-TFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKL 414 (645)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 414 (645)
...|++++|...++++.+.. |+.. .+..+ ......+..+...+...|++++|+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNK----------------------KGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhh----------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777777777766531 2110 00000 01123345566778889999999999
Q ss_pred HHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 415 YNTMLDKGFT-PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY 493 (645)
Q Consensus 415 ~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 493 (645)
++++.+.... ++..++..+...+...|++++|...++++.+..+. +..++..+..+|.+.|++++|...|+++.+..
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 9999886422 15778899999999999999999999999988766 78889999999999999999999999999874
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 494 PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-------------NAYTYRVMLLSFCKERNIKMVKRLLQD 557 (645)
Q Consensus 494 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 557 (645)
+.+..+|..+..+|.+.|++++|...|+++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 446889999999999999999999999998762 23 257899999999999999988877654
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=174.89 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=123.2
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 006437 252 SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV---QNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFH 328 (645)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (645)
..-..+||++|++|++.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4446699999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCC
Q 006437 329 NVLIDCLSKMGS-YDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLE 387 (645)
Q Consensus 329 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 387 (645)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999997 58899999999999999999999999988888777777766654444
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.3e-14 Score=144.94 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHH-HHHhcCCHHHHHH
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV--VSYTVAIR-GLLEGGRTEEAYI 518 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~ 518 (645)
..+.|...++......+. +...+..+...|...|++++|.+.|++.++....+.. ..+..+.. .+.+.|+.++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 457788888888777655 5566788999999999999999999999887533221 12233332 3457789999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 519 LYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 519 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
.|++..+ +.|+....... ...+.+++++..+.++. ++.+|..|+.+|...|++++|++.|++..+.|
T Consensus 394 ~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 394 HFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999988 66765433222 34455666666665554 78899999999999999999999999998765
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=5.1e-15 Score=140.80 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=191.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006437 336 SKMGSYDDALDVYDGLLELKLVPDS--YTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVK 413 (645)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 413 (645)
...|++..|+..++.... ..|+. .....+..+|...|+++.|...++. ...|+..++..+...+...++.++|++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 344555555555544332 12222 2223344555555555555555533 234566778888899999999999999
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 414 LYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 414 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
.++++...+..|+ ...+..+...+...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998775565 45556666889999999999999987 3477889999999999999999999999999875
Q ss_pred CCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 006437 493 YPLDVVSY---TVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHT 569 (645)
Q Consensus 493 ~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 569 (645)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|.+.++++.+..+. ++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 553211 22334444568999999999999985 3558889999999999999999999999999987765 8889
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCChh
Q 006437 570 SIRLTKFIFKFHSSSS-AVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 570 ~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 603 (645)
+..++..+...|+.++ +.++++++.+ ..|+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 9999999999999976 5689999884 567766
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=4.5e-15 Score=144.69 Aligned_cols=260 Identities=8% Similarity=-0.032 Sum_probs=161.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006437 86 FDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLF 165 (645)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (645)
+..+...+.. .|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLK-LANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3344444444 455555555555555443 2344455555555555555555555555555442 334455555555555
Q ss_pred hcCCHhHHHHHHhhcC---CCChhhHHHH--------------HH-HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 006437 166 KIGRVDLGIKVLKETQ---LPNFLSFNIA--------------LC-NLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILL 227 (645)
Q Consensus 166 ~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 227 (645)
..|++++|.+.|++.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 5555555555555433 1111122221 22 2666777888888888877653 23566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChh
Q 006437 228 NCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFS 307 (645)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (645)
..+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 88888888888888888877654 3356777788888888888888888888877653 235667777777888888888
Q ss_pred HHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 308 IAFSFLDMLESEGHAP-----------DLVFHNVLIDCLSKMGSYDDALDVYDGL 351 (645)
Q Consensus 308 ~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (645)
+|...++++.+..... +...+..+..++.+.|+.++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888887776542221 3566777777788888888887777643
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.8e-14 Score=144.63 Aligned_cols=199 Identities=12% Similarity=-0.004 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----C
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARV--------GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF----G 149 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ 149 (645)
....||.+..++.. .|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+. .
T Consensus 50 ~a~~yn~Lg~~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556666666666 56666666666654331 11223445556666666666666666666555421 0
Q ss_pred --C-CCCHHhHHHHHHHHHhc--CCHhHHHHHHhhcC---CCChhhHHHHHHH---HHhcCCcchHHHHHHHHHHCCCCC
Q 006437 150 --F-TPNTFARNIVMDVLFKI--GRVDLGIKVLKETQ---LPNFLSFNIALCN---LCKLNDVSNVKDVIGMMVRKGFYP 218 (645)
Q Consensus 150 --~-~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~---~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~p 218 (645)
. .....++..+..++... +++++|++.|++.. +.+...+..+..+ +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 11223333333333332 23555555555432 2222222222222 223344445555554444432 11
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 219 NVRMFEILLNCFCK----MGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 219 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
+..++..+...+.. .++.++|.+.++...... +.+..++..+...|...|++++|.+.+++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 22333333322222 233444444444444332 22333444444444444444444444444443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4.8e-14 Score=128.03 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=161.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV 469 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 469 (645)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 455677778888999999999999999988763 345777888888999999999999999999998876 777888899
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006437 470 DRLIEA-----------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVM 538 (645)
Q Consensus 470 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 538 (645)
.++.+. |++++|...+++.++.. |.+...|..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 99999999999998875 4468889999999999999999999999998866 788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 539 LLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 539 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..++...|++++|...++++.+..+. +...+..+..++.+.|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999987655 78889999999999999999999988765
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=3e-13 Score=137.48 Aligned_cols=144 Identities=6% Similarity=-0.062 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG-----RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----G 510 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 510 (645)
.+++++|...|++..+.+ +...+..+..+|. .| ++++|.+.|++.. .| ++..+..|...|.. .
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCC
Confidence 455555555555555444 3444444554444 33 5666666666555 32 55555555555554 2
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437 511 GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA 586 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 586 (645)
.+.++|...|++..+.|. ......|...|.. ..+.++|..+++...+.|.. +.......+......++..+|
T Consensus 336 ~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a 411 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEG 411 (452)
T ss_dssp CCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHH
Confidence 366666666666665442 2233444444442 34666677776666665532 222221222222233455566
Q ss_pred HHHHHHHHH
Q 006437 587 VNQLVEMCN 595 (645)
Q Consensus 587 ~~~~~~m~~ 595 (645)
.++.++..+
T Consensus 412 ~~~~~~~~~ 420 (452)
T 3e4b_A 412 QRLVQQELA 420 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-13 Score=126.22 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=151.9
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKL--VPDSYTFCSLLS 368 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~ 368 (645)
..|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++.+... .++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch--------
Confidence 445666666777777777777777776665 5666777777777778888888887777665210 0000
Q ss_pred HHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006437 369 TVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAIN 448 (645)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 448 (645)
......+..+...+...|++++|+..|++..+. .|+. ..+...|++++|..
T Consensus 76 --------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 76 --------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 001356677778888889999999999888874 3442 23445566777777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437 449 VYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV 528 (645)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 528 (645)
.++.+....+. +...+..+...+...|++++|...++++.+.. +.+...|..+...+.+.|++++|+..++++.+..
T Consensus 127 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 203 (258)
T 3uq3_A 127 KAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD- 203 (258)
T ss_dssp HHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 77777665443 45566667777777777777777777776654 3456667777777777777777777777766632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 529 PPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
+.+..++..+...+...|++++|.+.++++.+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 224666666777777777777777777766653
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7e-13 Score=124.09 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=152.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HhhHH
Q 006437 256 NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGH--APD----LVFHN 329 (645)
Q Consensus 256 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 329 (645)
..+..+...+...|++++|.+.|++..+.. .+...|..+..++...|++++|...+++..+... .++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665544 4555566666666666666666666665554311 111 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437 330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN 409 (645)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (645)
.+...+...|++++|...|+++.+.. |+. ..+.+.|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~---------------------------------------~~~~~~~~~~ 122 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA---------------------------------------DILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH---------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh---------------------------------------HHHHHHhHHH
Confidence 67777777777777777777776632 211 2244556677
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
+|...++.+.... +.+...+..+...+...|++++|...++++....+. +...+..+..++.+.|++++|...++++.
T Consensus 123 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777777642 223456667777777888888888888888777655 66778888888888888888888888888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 490 VEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 490 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+.. +.+...|..+..++.+.|++++|...+++..+
T Consensus 201 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 201 EKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 764 44577888888888888999999888888776
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=7.2e-13 Score=134.63 Aligned_cols=381 Identities=8% Similarity=-0.037 Sum_probs=195.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCH---hHHHHHHhhcCCCChhhHHHHHHHHHhcC--
Q 006437 125 FLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRV---DLGIKVLKETQLPNFLSFNIALCNLCKLN-- 199 (645)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g-- 199 (645)
+...+.+.|++++|.++|++..+.| ++.++..|..+|...|+. ++|.+.|++....+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555666777777777777776655 233334455555555555 56666665544334444444444333322
Q ss_pred ---CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 006437 200 ---DVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGY 276 (645)
Q Consensus 200 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 276 (645)
++++|+..|++..+.|. ...+..|...|...+..+++ .++.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~--------------------------------~~a~~ 130 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPN--------------------------------VNAQQ 130 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTT--------------------------------CCHHH
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCC--------------------------------HHHHH
Confidence 34455555555444331 11333344444333222211 12223
Q ss_pred HHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 006437 277 LWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMG---SYDDALDVYDGLLE 353 (645)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~ 353 (645)
.+......| +...+..+...|...+.++++......+.+.-...+...+..+...|...| +.++|++.|++..+
T Consensus 131 ~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 131 QISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 333333222 233444445555555533333332222211111112225555555566666 56666666666665
Q ss_pred CCCCCCHhhHHHHHHHHHhc----CCcccHHHHHhcCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCC
Q 006437 354 LKLVPDSYTFCSLLSTVCLS----GRFSLLPKLVCGLEVEADLVVYNALLSY-F--CKAGFPNQAVKLYNTMLDKGFTPD 426 (645)
Q Consensus 354 ~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~ 426 (645)
.| .++...+..+...|... ++.++|.+.|+... ..++..+..+... + ...+++++|+..|++..+.| +
T Consensus 208 ~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 208 RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 54 22333333444444333 45556666664433 4456666666665 3 45888999999999988876 5
Q ss_pred HhhHHHHHHHHHcCC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 006437 427 NYSFVGLLRGLCGAR-----KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AGRCHKAIQLFRRAIVEKYPLDV 497 (645)
Q Consensus 427 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 497 (645)
...+..+...|. .| ++++|...|++.. .+ +...+..+..+|.. ..++++|...|++..+.| +.
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~ 354 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QN 354 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CT
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hH
Confidence 566666666665 44 8999999998887 32 66677777777776 348999999999988876 56
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 498 VSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 498 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.....|...|.. ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 667777777764 458888999888888766 23222222222222223345555555555443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.3e-13 Score=123.70 Aligned_cols=206 Identities=9% Similarity=0.069 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++....+. +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45567777888889999999999999998753 346778888888999999999999999999888765 7788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 550 (645)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998875 4578889999999999999999999999998742 3468889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 551 VKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
|...++++.+.... +...+..+..+|.+.|++++|.+.++++.+. .|+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 227 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM 227 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence 99999999886554 6889999999999999999999999999864 45544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.3e-12 Score=120.22 Aligned_cols=206 Identities=14% Similarity=0.045 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5667888889999999999999999988763 346778888899999999999999999999988765 67888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 550 (645)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732234 57788899999999999999999999998743 3368889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 551 VKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
|...++++.+.... +...+..+...+.+.|+.++|.+.++++.+. .|+..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCH
Confidence 99999999886553 7888899999999999999999999999864 45544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.4e-11 Score=114.82 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=177.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437 324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC 403 (645)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 403 (645)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------------------ENSGCFNLGVLYY 49 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHH
Confidence 34555666677777777777777777776622 2334455566666
Q ss_pred H----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-
Q 006437 404 K----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG----ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE- 474 (645)
Q Consensus 404 ~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 474 (645)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 50 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 50 QGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred cCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 7 788888888888887765 56677777778888 888899988888888775 66778888888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 006437 475 ---AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK--- 544 (645)
Q Consensus 475 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--- 544 (645)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...|..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCS
T ss_pred CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 899999999999988876 67778888888887 889999999999988754 56778888888888
Q ss_pred -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006437 545 -ERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 545 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 597 (645)
.+++++|.+.+++..+.+ +...+..+..+|.+ .+++++|.+.+++..+.|
T Consensus 198 ~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 899999999999988865 36778888889988 899999999999998765
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=4.6e-12 Score=115.68 Aligned_cols=207 Identities=9% Similarity=-0.011 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++....+. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45678888899999999999999999988863 345778888999999999999999999999988765 6778899999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437 471 RLIEA-GRCHKAIQLFRRAIVEKYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN 547 (645)
Q Consensus 471 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 547 (645)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.+. .| +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 99999 99999999999998832223 3678899999999999999999999999874 45 58889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 548 IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+.. ..|+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~ 216 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence 999999999998865523777888888899999999999999999874 356554
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=7.3e-13 Score=120.17 Aligned_cols=194 Identities=9% Similarity=0.034 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
+++..+..+...+.+ .|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA-LGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 355556666666666 566666666666666554 3455666666666666666666666666666553 3445566666
Q ss_pred HHHHHhc-----------CCHhHHHHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 006437 161 MDVLFKI-----------GRVDLGIKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEIL 226 (645)
Q Consensus 161 l~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 226 (645)
..++... |++++|+..|++.. +.+...+..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666655 55555555554432 2233344444444444444444444444444443 344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
..++...|++++|...|+...+.. +.+...+..+...+...|++++|.+.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444444444432 11334444444444444444444444443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2e-12 Score=122.24 Aligned_cols=238 Identities=15% Similarity=0.087 Sum_probs=188.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437 327 FHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG 406 (645)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (645)
.+......+...|++++|...|+++.+.. |+ +...+..+...|...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-------------------------------~~~~~~~l~~~~~~~~ 51 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YN-------------------------------SPYIYNRRAVCYYELA 51 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC-------------------------------CSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-------------------------------cHHHHHHHHHHHHHHh
Confidence 44556677888899999999999888742 21 2234666777888999
Q ss_pred ChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 407 FPNQAVKLYNTMLDKGFTPD--NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL 484 (645)
Q Consensus 407 ~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 484 (645)
++++|+..+++..+.+..|+ ...+..+...+...|++++|...+++..+..+. +...+..+..+|...|++++|...
T Consensus 52 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999888432222 234788888999999999999999999988766 667899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 006437 485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN---IKMVKRLLQDVID 560 (645)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~ 560 (645)
+++..+.. +.+...|..+...+...+++++|++.++++.+ ..| +...+..+...+...|+ +++|...++++.+
T Consensus 131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 99998763 45677888888344445699999999999988 455 57788888888888888 8889999998876
Q ss_pred CC-CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 561 AR-IELD------YHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 561 ~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.. -.|+ ...|..+...|.+.|++++|.+.++++.+ +.|+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~ 255 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA--LDPTNK 255 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHH
Confidence 32 1122 36788899999999999999999999985 456655
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=2.1e-10 Score=120.37 Aligned_cols=439 Identities=12% Similarity=0.009 Sum_probs=254.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC---HhHHHH
Q 006437 99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR---VDLGIK 175 (645)
Q Consensus 99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~ 175 (645)
...+.+..|++..... +-|..+|..+++.+.+.+.++.+..+|+.+... ++.+...|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566667666665 569999999999999999999999999999876 47788889999988888888 999999
Q ss_pred HHhhcC--C---CChhhHHHHHHHHHhcCCc--------chHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH--------
Q 006437 176 VLKETQ--L---PNFLSFNIALCNLCKLNDV--------SNVKDVIGMMVR-KGF-YPN-VRMFEILLNCFC-------- 231 (645)
Q Consensus 176 ~~~~~~--~---~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~-------- 231 (645)
+|++.. . |++..|...+.-..+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999865 2 7777788777766665554 233466666543 455 443 456666665443
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHH
Q 006437 232 -KMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAF 310 (645)
Q Consensus 232 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (645)
..++++.+.++|+.+.......-..+|......-...+. ..+.+++.+ ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence 234566777788777743211112233222111100000 001111111 112233344
Q ss_pred HHHHHHHhC--CCC---CCH--------------------hhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCC
Q 006437 311 SFLDMLESE--GHA---PDL--------------------VFHNVLIDCLSKMG-------SYDDALDVYDGLLELKLVP 358 (645)
Q Consensus 311 ~~~~~~~~~--~~~---~~~--------------------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 358 (645)
..+.++... ++. |.. ..|...+.---..+ ..+.+..+|++....
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---- 338 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---- 338 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----
Confidence 444333211 110 000 01111111100000 011122223332221
Q ss_pred CHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAV-KLYNTMLDKGFTPDNYSFVGLLRGL 437 (645)
Q Consensus 359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~ 437 (645)
.......|-..+..+...|+.++|. .+|++.... ++.+...+...+...
T Consensus 339 -----------------------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 339 -----------------------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQY 388 (679)
T ss_dssp -----------------------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 1224555666666666667777775 777776653 333444455566666
Q ss_pred HcCCCHHHHHHHHHHHHHcCC---------CC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006437 438 CGARKIDEAINVYQGIVMNNP---------AV------------NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD 496 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 496 (645)
...|+++.|.++|+.++.... .| ...+|...++...+.|..+.|..+|.++.+......
T Consensus 389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~ 468 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT 468 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence 677777777777777765310 12 233567777777778888888888888876510112
Q ss_pred hhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 006437 497 VVSYTVAIRGLLEG-GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIRL 573 (645)
Q Consensus 497 ~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 573 (645)
...|-..+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|+.+|++.++....+ ....|..+
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33343333223333 3478888888887763 23355566677777777888888888888887654422 35677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 006437 574 TKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 574 ~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
++.-.+.|..+.+.++.++|.+.
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888764
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=9.3e-12 Score=117.54 Aligned_cols=176 Identities=11% Similarity=0.077 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (645)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++..+. +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH
Confidence 3334444444555555555555444432 112344555555555555555555555555544333 34444444422222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHh
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIA-VPPN------AYTYRVMLLSFCK 544 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~ 544 (645)
.+++++|.+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+.. -.|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 336666666666666543 2335555556666666665 556666666654321 1122 2456666667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVIDARIELDYHTSIRLT 574 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 574 (645)
.|++++|.+.++++.+..+. ++.....+.
T Consensus 234 ~~~~~~A~~~~~~al~~~p~-~~~a~~~l~ 262 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPT-NKKAIDGLK 262 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCcc-HHHHHHHhh
Confidence 77777777777777765543 444444443
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=6.9e-10 Score=116.51 Aligned_cols=448 Identities=8% Similarity=-0.010 Sum_probs=253.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHH
Q 006437 63 DLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM---YGMVL 139 (645)
Q Consensus 63 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~ 139 (645)
+.+.+..|+......+ .|...|..++..+.+ .+.++.+..+|+++...- +.+...+...+..-.+.++ ++.+.
T Consensus 48 ~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~-~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVS-LKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3345555555444434 499999999999988 799999999999999874 6677888888888888888 99999
Q ss_pred HHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCH--------hHHHHHHhhcC-------CCChhhHHHHHHHHH-------
Q 006437 140 EAFDEMGRFG-FTPNTFARNIVMDVLFKIGRV--------DLGIKVLKETQ-------LPNFLSFNIALCNLC------- 196 (645)
Q Consensus 140 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~-------~~~~~~~~~ll~~~~------- 196 (645)
++|++..... .+|++..|...+....+.++. +.+.++|+... ..+...|...+.-..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999999764 248899999988877766653 33457777532 223456777776543
Q ss_pred --hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHH
Q 006437 197 --KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMA 274 (645)
Q Consensus 197 --~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 274 (645)
..++++.+..+|+..+......-..+|......--..+. ..+.+++.+. ..+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence 234567788888888753111112233222211111111 1122221111 1123333
Q ss_pred HHHHHHHHHc--CC----C-----------C-C-------hhchHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCC
Q 006437 275 GYLWEKMVQN--GC----S-----------P-N-------VVTYTSLIKGFMEAK-------MFSIAFSFLDMLESEGHA 322 (645)
Q Consensus 275 ~~~~~~m~~~--~~----~-----------~-~-------~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~ 322 (645)
...+.++... ++ + | . ...|...+.---..+ ..+.+..+|++.... +.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC
Confidence 3444333211 11 0 0 0 122333333222211 123345667766654 23
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCC------------C
Q 006437 323 PDLVFHNVLIDCLSKMGSYDDAL-DVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEV------------E 389 (645)
Q Consensus 323 ~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~ 389 (645)
-....|...+..+...|+.++|. ++|++.... ++.+...+-.++....+.|+++.|.++++..-. .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 35566666666677778877886 888887763 334444555566666666777666666632210 0
Q ss_pred C------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 006437 390 A------------DLVVYNALLSYFCKAGFPNQAVKLYNTMLDK-GFTPDNYSFVGLLRGLCGA-RKIDEAINVYQGIVM 455 (645)
Q Consensus 390 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~ 455 (645)
| ....|-..+....+.|..+.|..+|....+. +. +....|...+..-.+. ++.+.|..+|+..++
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2 1224555566666666677777777766654 11 1112222222111222 346777777777666
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437 456 NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL--DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533 (645)
Q Consensus 456 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 533 (645)
..+. +...+...++.....|+.+.|..+|++.+....++ ....|...+..-.+.|+.+.+..+.+++.+ ..|+..
T Consensus 499 ~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~ 575 (679)
T 4e6h_A 499 YFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVN 575 (679)
T ss_dssp HHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCC
T ss_pred HCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence 6433 45555666666666677777777777766543111 234566666666666777777777777766 345544
Q ss_pred HHHHHHHHH
Q 006437 534 TYRVMLLSF 542 (645)
Q Consensus 534 ~~~~ll~~~ 542 (645)
....+.+-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444444444
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=3.6e-12 Score=125.25 Aligned_cols=242 Identities=10% Similarity=0.043 Sum_probs=198.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 006437 326 VFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKA 405 (645)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (645)
..|..+...+.+.|++++|+..++++++.. ..+...|+.+...+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---------------------------------P~~~~a~~~~g~~l~~~ 144 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN---------------------------------AANYTVWHFRRVLLKSL 144 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHc
Confidence 456777788888999999999999988742 22466778888888899
Q ss_pred CC-hHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 406 GF-PNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL 484 (645)
Q Consensus 406 g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 484 (645)
|+ +++|+..|++..+.. +-+...|..+..++...|++++|...++++++..+. +...|..+..++.+.|++++|+..
T Consensus 145 g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHH
Confidence 96 999999999998864 235678888888999999999999999999998877 888999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHH
Q 006437 485 FRRAIVEKYPLDVVSYTVAIRGLLE-GGRTEEA-----YILYSQMKHIAVPP-NAYTYRVMLLSFCKER--NIKMVKRLL 555 (645)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~ 555 (645)
++++++.. +.+...|+.+..++.+ .|..++| +..+++..+ +.| +...|..+...+...| ++++|.+.+
T Consensus 223 ~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 223 VDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 99999876 4578899999999999 6665777 588988887 556 6778888888898888 689999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCChh--hhHHHh
Q 006437 556 QDVIDARIELDYHTSIRLTKFIFKFH---------SSSSAVNQLVEM-CNLGLIPDEM--WRKLGL 609 (645)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~--w~~~~~ 609 (645)
.++ +.... +...+..++.+|.+.| ..++|+++++++ . .+.|... |.....
T Consensus 300 ~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 300 LDL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK--EKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHH
T ss_pred HHh-ccCCC-CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHH
Confidence 887 44333 6788999999998874 258999999998 5 4677765 665543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=6.8e-11 Score=111.65 Aligned_cols=224 Identities=14% Similarity=-0.005 Sum_probs=144.0
Q ss_pred hhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 006437 290 VVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSK----MGSYDDALDVYDGLLELKLVPDSYTFCS 365 (645)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (645)
..++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...|++..+.+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------
Confidence 344444555555555666666655555552 233445555555555 666666666666655532
Q ss_pred HHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--
Q 006437 366 LLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCK----AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG-- 439 (645)
Q Consensus 366 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 439 (645)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 22233344444555 666666666666666653 45556666666666
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 006437 440 --ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE----AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE---- 509 (645)
Q Consensus 440 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 509 (645)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 677777777777776654 45556666677776 778888888888877764 56677777777877
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006437 510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 563 (645)
.+++++|+..+++..+.+ | ...+..+...|.. .+++++|.+.+++..+.+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 788888888888877743 2 6667777777777 7888888888888877653
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=1.4e-11 Score=114.81 Aligned_cols=129 Identities=15% Similarity=0.027 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
+..+...|...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 3344444444555555555555544421122 2233333344444444444444444444443322 2333444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 474 EAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 474 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
..|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444444444444322 22333444444444444444444444444443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.5e-12 Score=123.20 Aligned_cols=220 Identities=16% Similarity=0.014 Sum_probs=127.2
Q ss_pred cCCChHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006437 59 NCPSDLIALSFFIWCAKQRDYF--HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYG 136 (645)
Q Consensus 59 ~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (645)
..++++.|+..|+.+....+.. .++..|..+...+.. .|+++.|...|+++.... +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456677777777776642211 245666667777777 677777777777777664 345677777777777777777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 006437 137 MVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRK 214 (645)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 214 (645)
+|...|+++.+.. +.+..++..+..+|...|++++|...|++.. .|+.......+..+...|++++|...+++....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777777777653 3456666667777777777777777666654 233333333333344456666666666555443
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 215 GFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL---SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 215 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
. +++...+ .++..+...++.++|...+....+..... +...+..+...|.+.|++++|.+.|++..+
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 1222222 24444555555555665555554321110 134455555555555555555555555554
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=3.5e-12 Score=118.17 Aligned_cols=213 Identities=14% Similarity=0.166 Sum_probs=158.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437 324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC 403 (645)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 403 (645)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------------------~~~~~~~~~la~~~~ 68 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---------------------------------KEDAIPYINFANLLS 68 (243)
T ss_dssp --------------------CCTTHHHHHTTC---------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---------------------------------cccHHHHHHHHHHHH
Confidence 34455556666777777777777777766531 224566777888889
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ 483 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 483 (645)
..|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+.+.|++++|..
T Consensus 69 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 69 SVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999988763 346777888888999999999999999999888765 67788889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.++++.+.. +.+...+..+...+.+.|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++++.+..+
T Consensus 147 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 999998764 4578889999999999999999999999988743 34688899999999999999999999999988665
Q ss_pred CcCHHHHHHHH
Q 006437 564 ELDYHTSIRLT 574 (645)
Q Consensus 564 ~~~~~~~~~l~ 574 (645)
. +...+..+.
T Consensus 225 ~-~~~~~~~~~ 234 (243)
T 2q7f_A 225 D-HMLALHAKK 234 (243)
T ss_dssp T-CHHHHHHHT
T ss_pred c-hHHHHHHHH
Confidence 4 455554443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.3e-11 Score=121.21 Aligned_cols=247 Identities=9% Similarity=0.039 Sum_probs=168.9
Q ss_pred hchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS-YDDALDVYDGLLELKLVPDSYTFCSLLST 369 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 369 (645)
..|..+...+...|++++|+..++++.+... -+...|+.+..++...|+ +++|+..|+++.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 3455556666666777777777777666432 245566666777777775 777777777777632
Q ss_pred HHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006437 370 VCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINV 449 (645)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 449 (645)
..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|...
T Consensus 163 -------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 163 -------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 2244556666666667777777777777777653 22456667777777777777777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 006437 450 YQGIVMNNPAVNAHVHTAIVDRLIE-AGRCHKA-----IQLFRRAIVEKYPLDVVSYTVAIRGLLEGG--RTEEAYILYS 521 (645)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 521 (645)
++++++..+. +...|+.+..++.+ .|..++| +..|++++... +-+...|+.+...+.+.| ++++|++.+.
T Consensus 223 ~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 223 VDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 7777777666 66777777777777 5554565 47777777764 446778888888888877 6888888888
Q ss_pred HHhhCCCCC-CHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 006437 522 QMKHIAVPP-NAYTYRVMLLSFCKER---------NIKMVKRLLQDV-IDARIELDYHTSIRLTKFIF 578 (645)
Q Consensus 522 ~m~~~~~~p-~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 578 (645)
++ + ..| +...+..+...|.+.| ..++|.++++++ .+.++. ....|..+...+.
T Consensus 301 ~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 301 DL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred Hh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 87 3 344 6778888888887764 258899999888 665443 4566666666554
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=4.4e-11 Score=109.07 Aligned_cols=204 Identities=9% Similarity=0.007 Sum_probs=161.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006437 324 DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFC 403 (645)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 403 (645)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence 34566777788888888888888888877642 223456777778888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA-RKIDEAINVYQGIVMNNPAV-NAHVHTAIVDRLIEAGRCHKA 481 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 481 (645)
..|++++|...+++..+.. +.+...+..+...+... |++++|...++.+.+....| +...+..+..++...|++++|
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999998888753 33567788888888999 99999999999988832222 366788888999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVP-PNAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999988764 4467888899999999999999999999988743 3 4677777777888899999999999998876
Q ss_pred CCC
Q 006437 561 ARI 563 (645)
Q Consensus 561 ~~~ 563 (645)
..+
T Consensus 211 ~~p 213 (225)
T 2vq2_A 211 NFP 213 (225)
T ss_dssp HCT
T ss_pred hCC
Confidence 543
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=2.5e-12 Score=121.67 Aligned_cols=243 Identities=10% Similarity=-0.047 Sum_probs=163.7
Q ss_pred cCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 006437 97 TGRFETVRGIVGELARVGC---VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLG 173 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 173 (645)
.|+++.|+..++++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 5778889999988887632 1245677788888888999999999999888764 45678888888888888888888
Q ss_pred HHHHhhcC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437 174 IKVLKETQ---LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLG 250 (645)
Q Consensus 174 ~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (645)
.+.|++.. +.+...+..+...+...|++++|.+.|+++.+.. |+.......+..+...|++++|...++......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 88888765 4456677788888888888888888888887653 444444444555566678888888887766553
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437 251 TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS---PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327 (645)
Q Consensus 251 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (645)
+++...+ .++..+...++.++|.+.++........ .+...+..+...|...|++++|...|++..+.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2233333 3666667777777777777776543210 014566667777777777777777777776652 321
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006437 328 HNVLIDCLSKMGSYDDALDVY 348 (645)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~ 348 (645)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455566666665544
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.8e-11 Score=106.61 Aligned_cols=171 Identities=11% Similarity=0.050 Sum_probs=113.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006437 426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIR 505 (645)
Q Consensus 426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 505 (645)
+...|..+...+...|++++|...|++.++..+. +...+..+..+|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445666666666666666666666666666555 56666666777777777777777777666553 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437 506 GLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS 584 (645)
Q Consensus 506 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 584 (645)
.+...++++.|...+.+..+ ..| +...+..+...+...|++++|.+.++++.+.++. ++..|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 67777777777777777665 334 5666777777777777777777777777765544 5667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChh
Q 006437 585 SAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 585 ~A~~~~~~m~~~g~~p~~~ 603 (645)
+|++.+++..+ ..|+..
T Consensus 159 ~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHh--CCccCH
Confidence 77777777764 345443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=2.4e-10 Score=109.91 Aligned_cols=188 Identities=9% Similarity=0.033 Sum_probs=151.3
Q ss_pred HcCCh-------HHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHh
Q 006437 404 KAGFP-------NQAVKLYNTMLDKGFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAH-VHTAIVDRLIE 474 (645)
Q Consensus 404 ~~g~~-------~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 474 (645)
+.|++ ++|..+|++..+. +.| +...+..+...+...|++++|..+|+++++..+. +.. +|..++..+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHH
Confidence 45775 8999999998873 234 4557888888889999999999999999986554 333 78889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL-EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
.|++++|..+|+++++.. +++...|........ ..|+.++|..+|++..+. .| +...|..++..+.+.|++++|.
T Consensus 147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998864 345555554433322 369999999999999873 45 6788889999999999999999
Q ss_pred HHHHHHHHCC-CCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 553 RLLQDVIDAR-IEL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 553 ~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.+|+++.+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999863 343 5778999999999999999999999999854
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=5.1e-12 Score=127.40 Aligned_cols=203 Identities=11% Similarity=0.009 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHcCCC-----------------HHHHHHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GF-TPDNYSFVGLLRGLCGARK-----------------IDEAINVYQ 451 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 451 (645)
.+..+...|...|++++|...+++..+. +- .....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3445555566666666666666555432 10 1113345556666666677 777777766
Q ss_pred HHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 452 GIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYS 521 (645)
Q Consensus 452 ~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 521 (645)
+..+. + .......+..+...|...|++++|.+.+++..+.... ++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 1 1112346677888888889999998888887654200 11 2377888889999999999999998
Q ss_pred HHhhCC--C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006437 522 QMKHIA--V--P-PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-----ELDYHTSIRLTKFIFKFHSSSSAVNQLV 591 (645)
Q Consensus 522 ~m~~~~--~--~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 591 (645)
+..+.. . . ....++..+...+...|++++|.+.+++..+... ......+..+..+|.+.|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 876421 0 0 1256788888899999999999999998875311 1124578888999999999999999999
Q ss_pred HHHHC
Q 006437 592 EMCNL 596 (645)
Q Consensus 592 ~m~~~ 596 (645)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=5.6e-12 Score=126.78 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhchHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhh
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPN-----VVTYTSLIKGFMEAKMFSIAFSFLDMLESE----GHAP-DLVF 327 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 327 (645)
+......+...|++++|...|++..+.+ |+ ...+..+...+...|++++|...+++..+. +..| ...+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3334444444455555555554444431 11 123444444555555555555555443221 1111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 006437 328 HNVLIDCLSKMGSYDDALDVYDGLLELKLV-PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAG 406 (645)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (645)
+..+...+...|++++|...+++..+.... ++. .....++..+...|...|
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----------------------------VGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc----------------------------cchHHHHHHHHHHHHHcC
Confidence 556667777777888777777766542100 000 001223444555555566
Q ss_pred C--------------------hHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-C
Q 006437 407 F--------------------PNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-V 460 (645)
Q Consensus 407 ~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 460 (645)
+ +++|+..+++..+. +..| ...++..+...+...|++++|...+++....... +
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 6 66777666655431 1111 1345667777888889999999888887754211 1
Q ss_pred ----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 006437 461 ----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----A 527 (645)
Q Consensus 461 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~ 527 (645)
...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1336777888899999999999999887653100 11 557888888999999999999999987642 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChhH
Q 006437 528 VPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHSSSS 585 (645)
Q Consensus 528 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~ 585 (645)
-.+ ...++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+...
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 111 1557888888999999999999999987642 211 135667788888888887643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.1e-11 Score=124.51 Aligned_cols=280 Identities=12% Similarity=0.051 Sum_probs=205.2
Q ss_pred CChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006437 288 PNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPD----LVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTF 363 (645)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (645)
.....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++..+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------- 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------
Confidence 34455666677788899999999999988876322 2 3467778888889999999999888765421
Q ss_pred HHHHHHHHhcCCcccHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 006437 364 CSLLSTVCLSGRFSLLPKLVCGLEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGL 437 (645)
Q Consensus 364 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~ 437 (645)
...+..+ ....+..+...|...|++++|+..+++..+... .++ ..++..+...+
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 0001011 234567777888889999999998887765310 011 34677788888
Q ss_pred HcCCC--------------------HHHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 438 CGARK--------------------IDEAINVYQGIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK 492 (645)
Q Consensus 438 ~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 492 (645)
...|+ +++|...+++.... + ......++..+...|...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88999 99999999887653 1 11124467888999999999999999999887541
Q ss_pred C-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 493 Y-PLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 493 ~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
. .++ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.++++.+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 012 347888999999999999999999997642 1111 15678889999999999999999999987532
Q ss_pred CC----c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 563 IE----L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 563 ~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.. + ....+..+..+|.+.|++++|.+.+++..+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1 2667889999999999999999999987543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.3e-11 Score=120.46 Aligned_cols=203 Identities=11% Similarity=0.024 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCC--------------------HHHHHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGLCGARK--------------------IDEAIN 448 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 448 (645)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344555566666666666666665543210 011 2245556666666666 777777
Q ss_pred HHHHHHHc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHH
Q 006437 449 VYQGIVMN----N-PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 449 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
.+++.... + .......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 1 1112346677888888999999999998887654100 11 3378888889999999999999
Q ss_pred HHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 519 LYSQMKHI----AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI-----ELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 519 ~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.+++..+. +..+ ...++..+...+...|++++|...++++.+... .....++..+...|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99987642 1111 156788888999999999999999998875311 1125578889999999999999999
Q ss_pred HHHHHHHC
Q 006437 589 QLVEMCNL 596 (645)
Q Consensus 589 ~~~~m~~~ 596 (645)
.++++.+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998754
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=9.1e-11 Score=103.27 Aligned_cols=167 Identities=13% Similarity=0.125 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
++..|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56778889999999999999999999998864 335778888999999999999999999999888776 6777888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIK 549 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~ 549 (645)
.+...++++.|...+++..... +.+...+..+...|.+.|++++|++.|++..+ +.| +..++..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999998765 55788899999999999999999999999988 455 6889999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 006437 550 MVKRLLQDVIDAR 562 (645)
Q Consensus 550 ~a~~~~~~~~~~~ 562 (645)
+|.+.++++++.+
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998854
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.7e-11 Score=123.58 Aligned_cols=274 Identities=12% Similarity=0.042 Sum_probs=175.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hchHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHhhHH
Q 006437 260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNV-----VTYTSLIKGFMEAKMFSIAFSFLDMLESE----GH-APDLVFHN 329 (645)
Q Consensus 260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 329 (645)
.+...+...|++++|.+.|++..+.+ |+. ..|..+...|...|++++|...+++..+. +. ......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555556666666555555432 221 24555555556666666666665554432 11 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCC--
Q 006437 330 VLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGF-- 407 (645)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 407 (645)
.+...+...|++++|...+++..+.... .++ .......+..+...|...|+
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~------------~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQ---------------LGD------------RLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTC------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------hhc------------hHHHHHHHHHHHHHHHHcCccc
Confidence 6777777888888888887776542100 000 00112345555566666666
Q ss_pred ---------------hHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----CcH
Q 006437 408 ---------------PNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA-----VNA 462 (645)
Q Consensus 408 ---------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 462 (645)
+++|+..+++..+. +..+ ....+..+...+...|++++|...+++..+.... ...
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 77777777665431 1111 2346777778888999999999999888764321 112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--P---LDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA 532 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 532 (645)
..+..+..+|...|++++|...+++..+... . ....++..+...|...|++++|...+++..+. +..+ ..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 3677889999999999999999998775420 0 11567888999999999999999999998652 1111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
.++..+...|...|++++|.+.+++..+..
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578888999999999999999999988743
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.7e-10 Score=114.86 Aligned_cols=237 Identities=10% Similarity=0.016 Sum_probs=123.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 296 LIKGFMEAKMFSIAFSFLDMLESE----GHAP-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+++..+.-
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------- 173 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY--------------- 173 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------
Confidence 445567788888888888887664 1111 23567778888888899998888888766521
Q ss_pred HhcCCcccHHHHHhcCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCH
Q 006437 371 CLSGRFSLLPKLVCGLEV--EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGF-TPD----NYSFVGLLRGLCGARKI 443 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~ 443 (645)
...+. .....+++.+...|...|++++|+..+++..+... .++ ..++..+...+...|++
T Consensus 174 -------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 174 -------------KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp -------------HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 00000 01133566666777778888888877776654210 011 12344444444455555
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 444 DEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQ 522 (645)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 522 (645)
++|...+++..... ...+. +....++..+...|.+.|++++|...+++
T Consensus 241 ~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 241 EDAIPYFKRAIAVF-------------------------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHHHHHHH-------------------------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555554444310 00011 11234445555555555555555555555
Q ss_pred HhhCC---CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 523 MKHIA---VPP-NAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 523 m~~~~---~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
..+.. -.| ....+..+...+...|+ +++|..++++. +..+ ....+..+...|.+.|++++|.+.+++..
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43210 011 11223444555555555 44444444433 2222 23345556666666666666666666554
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.3e-09 Score=104.65 Aligned_cols=81 Identities=10% Similarity=0.060 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCCCChhchHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 006437 272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGFME-------AKMF-------SIAFSFLDMLESEGHAPDLVFHNVLIDCLSK 337 (645)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 337 (645)
++|..+|++..... +.+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665431 2344555555555442 3443 5555666555552111133345555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 006437 338 MGSYDDALDVYDGLLE 353 (645)
Q Consensus 338 ~~~~~~a~~~~~~~~~ 353 (645)
.|++++|..+|+++.+
T Consensus 112 ~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5666666666655554
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=2e-10 Score=114.38 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA 532 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 532 (645)
.++..+..+|...|++++|.+.+++..+.. .++ ...++..+...|...|++++|+..+++..+. +..| ..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 345566667777777777777776665431 001 1347888899999999999999999987752 3324 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCChh--
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDAR----IELDYHTSIRLTKFIFKFHS---SSSAVNQLVEMCNLGLIPDEM-- 603 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~-- 603 (645)
.++..+...+...|++++|.+.+++..+.. -......+..+...+...|+ .++|+.++++. +..|+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 789999999999999999999999987531 11123346778888999999 77777777766 4455443
Q ss_pred hhHHHhhh---cccCCccccccccccc
Q 006437 604 WRKLGLLS---DETMTPVSLFDGFVPC 627 (645)
Q Consensus 604 w~~~~~L~---~~~~~~~~~~~~~~~~ 627 (645)
+..++.+- |+..+|...++.....
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22222222 6666666666655443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=5.7e-11 Score=121.47 Aligned_cols=195 Identities=10% Similarity=-0.056 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFP-NQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV 469 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 469 (645)
+...+..+...+...|++ ++|+..|++..+.. +-+...+..+..++...|++++|.+.|++.++..+. ...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHH
Confidence 456666777777788888 88888888887753 234677888888888888888888888888877644 57778888
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCC--
Q 006437 470 DRLIEA---------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG--------GRTEEAYILYSQMKHIAVPP-- 530 (645)
Q Consensus 470 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p-- 530 (645)
.+|... |++++|.+.|+++++.. +.+...|..+..+|... |++++|+..|++..+ +.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCc
Confidence 888888 88888888888888764 44678888888888888 888999999988887 345
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006437 531 --NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVE 592 (645)
Q Consensus 531 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 592 (645)
+...|..+..+|...|++++|.+.++++.+..+. +...+..+..++...|++++|++.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788888888888999999999999988886655 677788888888888888888875544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=8.8e-11 Score=113.13 Aligned_cols=204 Identities=16% Similarity=0.084 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------C-
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDK-------GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMN------N- 457 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 457 (645)
..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555566666666666666555542 11222334555555556666666666666655543 1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 006437 458 PAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE------KY-PLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI---- 526 (645)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 526 (645)
.......+..+...|...|++++|.+.++++.+. +. +.....+..+...+...|++++|+.+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1112344555566666666666666666655543 11 112344555556666666666666666665442
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------------------
Q 006437 527 --AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA------------------------------------------ 561 (645)
Q Consensus 527 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------------------ 561 (645)
+..| ...++..+...|...|++++|.+.++++.+.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2334555556666666666666666655531
Q ss_pred ------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 562 ------RIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 562 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
....+..++..++.+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122467788999999999999999999998864
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=1e-10 Score=114.00 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=158.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHhHHH
Q 006437 89 MISVVTRLTGRFETVRGIVGELARVGCVIK----AQTFLLFLRIYWRGEMYGMVLEAFDEMGRF----GFT-PNTFARNI 159 (645)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 159 (645)
....+.. .|+++.|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....++..
T Consensus 11 ~g~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCK-SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH-hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344444 566666666666665553 122 244555566666666666666666655422 111 12345555
Q ss_pred HHHHHHhcCCHhHHHHHHhhcC-----CCC----hhhHHHHHHHHHhcCC--------------------cchHHHHHHH
Q 006437 160 VMDVLFKIGRVDLGIKVLKETQ-----LPN----FLSFNIALCNLCKLND--------------------VSNVKDVIGM 210 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~ 210 (645)
+...|...|++++|...|++.. .++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666665542 112 1245555666666666 6666666665
Q ss_pred HHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 211 MVRK----GFYP-NVRMFEILLNCFCKMGRIAEAYQLLGLMITLG----T-SLSVNAWTVLIDGFRRLRRLDMAGYLWEK 280 (645)
Q Consensus 211 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 280 (645)
..+. +..+ ...++..+...+...|++++|.+.++...+.. . .....++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 1111 23356777777888888888888887776431 1 11123677777888888888888888887
Q ss_pred HHHcC----CCC-ChhchHHHHHHHHhcCChhHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 281 MVQNG----CSP-NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEG----H-APDLVFHNVLIDCLSKMGSYDDALDVYDG 350 (645)
Q Consensus 281 m~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (645)
..+.. ..+ ...++..+...+...|++++|...+++..+.. . .....++..+...+.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 66421 000 14556677777888888888888887765431 1 11133566777888888888888888888
Q ss_pred HHHC
Q 006437 351 LLEL 354 (645)
Q Consensus 351 ~~~~ 354 (645)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7763
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.8e-10 Score=122.38 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=105.6
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437 427 NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG 506 (645)
Q Consensus 427 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (645)
...++.+...+.+.|++++|.+.|++.++..+. +...+..+..+|.+.|++++|++.|+++++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555666666666666666666666665554 55566666666666666666666666666653 3346666667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 006437 507 LLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSS 585 (645)
Q Consensus 507 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 585 (645)
|.+.|++++|++.|++..+ +.| +...|..+..+|...|++++|++.++++++.++. +...+..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777666 345 4566667777777777777777777777665544 56666677777777777777
Q ss_pred HHHHHHHHH
Q 006437 586 AVNQLVEMC 594 (645)
Q Consensus 586 A~~~~~~m~ 594 (645)
|.+.++++.
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=1.8e-10 Score=117.74 Aligned_cols=213 Identities=10% Similarity=-0.001 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHh
Q 006437 306 FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSY-DDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVC 384 (645)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 384 (645)
++++...+++..... ..+...+..+...+...|++ ++|++.|++..+..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------------------
Confidence 455666666555432 23566777777788888888 88888888877642
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---------CCHHHHHHHHHHHHH
Q 006437 385 GLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGA---------RKIDEAINVYQGIVM 455 (645)
Q Consensus 385 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~ 455 (645)
+.+...|..+...|...|++++|+..|++..+. .|+...+..+...+... |++++|...+++.++
T Consensus 134 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 134 ----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 224566777888888889999999999988875 46677888888888888 999999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 456 NNPAVNAHVHTAIVDRLIEA--------GRCHKAIQLFRRAIVEKYP---LDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 456 ~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
..+. +...+..+..+|... |++++|.+.|+++.+.. + .+...|..+..+|...|++++|++.|++..
T Consensus 208 ~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 208 MDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8776 778888999999988 99999999999999864 3 478899999999999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 525 HIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDV 558 (645)
Q Consensus 525 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 558 (645)
+ +.| +...+..+..++...|++++|.+.+.++
T Consensus 286 ~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 A--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8 456 5778888899999999988888765443
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=4e-10 Score=99.05 Aligned_cols=162 Identities=10% Similarity=0.060 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437 430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE 509 (645)
Q Consensus 430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (645)
+..+...+...|++++|...++.+....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 334444555555666666655555544333 45555666666666666666666666666543 3356666667777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..++..+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766532 335666777777777777777777777777765433 566777777777777777777777
Q ss_pred HHHHHH
Q 006437 590 LVEMCN 595 (645)
Q Consensus 590 ~~~m~~ 595 (645)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.3e-09 Score=99.55 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIV 469 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 469 (645)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++.++..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3556777788889999999999999999988754367777777888999999999999999999988776 778888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVEKYPLDV-------VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN---AYTYRVML 539 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 539 (645)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999998864 3345 4588888889999999999999999988 5565 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 540 LSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..|...| ..+++++...+.. +...|.... ....+.+++|++.+++..+ +.|+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 7775544 3445555554332 344444433 3345678899999999885 456655
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=2.2e-09 Score=106.54 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=166.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 006437 331 LIDCLSKMGSYDDALDVYDGLLELKL-VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPN 409 (645)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (645)
....+...|++++|...|++..+... .++.. ....++..+...|...|+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDI----------------------------EKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH----------------------------HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH----------------------------HHHHHHHHHHHHHHHcCCcH
Confidence 34556778899999999988775311 01110 02345667777888888888
Q ss_pred HHHHHHHHHHHC----CC-CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----C-CCcHHHHHHHHHHHHhcCCH
Q 006437 410 QAVKLYNTMLDK----GF-TP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNN----P-AVNAHVHTAIVDRLIEAGRC 478 (645)
Q Consensus 410 ~a~~~~~~m~~~----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~ 478 (645)
.|+..+++..+. +- .+ ...++..+...|...|++++|.+.+++..+.. . .....++..+..+|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 888888876652 10 11 24467778888899999999999998877641 1 11244677889999999999
Q ss_pred HHHHHHHHHHHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC-HHHHHHHHHHHHhcCC--
Q 006437 479 HKAIQLFRRAIV-----EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV---PPN-AYTYRVMLLSFCKERN-- 547 (645)
Q Consensus 479 ~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~-- 547 (645)
++|.+.+++..+ .. +....++..+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999886 43 33467788899999999999999999999875321 222 3455666666777788
Q ss_pred -HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 548 -IKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 548 -~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
+++|..++++ .+..+ ....+..+...|.+.|++++|.+.+++..+
T Consensus 318 ~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 318 KIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677766665 33222 345677899999999999999999998863
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.2e-10 Score=112.18 Aligned_cols=172 Identities=19% Similarity=0.133 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-C
Q 006437 221 RMFEILLNCFCKMGRIAEAYQLLGLMITL-------GTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQN------G-C 286 (645)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~-~ 286 (645)
.++..+...+...|++++|..+++.+.+. ..+.....+..+...|...|++++|.+.+++.... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555566666666665555542 12223445555666666666666666666665532 1 1
Q ss_pred CCChhchHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C
Q 006437 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESE------GH-APDLVFHNVLIDCLSKMGSYDDALDVYDGLLELK---L 356 (645)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~ 356 (645)
+....++..+...|...|++++|...++++.+. +. ......+..+...+...|++++|.+.++++.+.. .
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 123445566666666667777777666666543 11 1234556777888888999999999888876530 0
Q ss_pred CCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006437 357 VPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLD 420 (645)
Q Consensus 357 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 420 (645)
.++ .......+..+...|...|++++|...++++.+
T Consensus 188 ~~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPD----------------------------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTT----------------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC----------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 011234567778888889999999999988775
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.4e-09 Score=95.40 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3456677778888999999999998887653 345677888888889999999999999999887655 67788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 551 (645)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988764 5578888999999999999999999999988743 34678899999999999999999
Q ss_pred HHHHHHHHHCC
Q 006437 552 KRLLQDVIDAR 562 (645)
Q Consensus 552 ~~~~~~~~~~~ 562 (645)
.+.++++.+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999987643
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=1.3e-08 Score=100.85 Aligned_cols=272 Identities=10% Similarity=-0.007 Sum_probs=127.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----chHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----hhHHHH
Q 006437 261 LIDGFRRLRRLDMAGYLWEKMVQNGCSPNVV----TYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APDL----VFHNVL 331 (645)
Q Consensus 261 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l 331 (645)
....+...|++++|...+++.....-..+.. .+..+...+...|++++|...+++..+... ..+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344555666666666666655432111111 233344445555666666655555443200 0011 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCC--C-CHHHHHHHHHHHHHcCCh
Q 006437 332 IDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVE--A-DLVVYNALLSYFCKAGFP 408 (645)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 408 (645)
...+...|++++|...+++..+. ....+.. | ....+..+...+...|++
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQL----------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----------------------------HHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 44555555555555555544431 0111111 2 123444555566666666
Q ss_pred HHHHHHHHHHHHCCCC--C--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHH----HHHHHHHhcCCH
Q 006437 409 NQAVKLYNTMLDKGFT--P--DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVHT----AIVDRLIEAGRC 478 (645)
Q Consensus 409 ~~a~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~ 478 (645)
++|...+++..+.... + ...++..+...+...|++++|...+++.......+ ...... ..+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 6666666665542211 1 12234445555556666666666666655431111 111111 122335566666
Q ss_pred HHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCH-HHHHHHHHHHHhcCCHHH
Q 006437 479 HKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPNA-YTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 479 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~ 550 (645)
++|...+++.......+. ...+..+...+...|++++|...+++..+. |..++. .++..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 666666666554321110 113445555566666666666666655321 111111 244445555566666666
Q ss_pred HHHHHHHHHH
Q 006437 551 VKRLLQDVID 560 (645)
Q Consensus 551 a~~~~~~~~~ 560 (645)
|...+++..+
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=2.2e-09 Score=106.53 Aligned_cols=312 Identities=11% Similarity=0.013 Sum_probs=200.5
Q ss_pred CCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcC--C--CcCHHhHHHHHHHH--HhcCCHHHH---------HHHHHH
Q 006437 218 PNVRMFEILLNCF--CKMGRIAEAYQLLGLMITLG--T--SLSVNAWTVLIDGF--RRLRRLDMA---------GYLWEK 280 (645)
Q Consensus 218 p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~--~~~~~~~~a---------~~~~~~ 280 (645)
|+...-..+-..| ...+++++|.++++++.+.. . ..+...|-.++..- ...+.++.+ .+.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444444444444 56777777777777765421 1 22233333333321 111222222 255555
Q ss_pred HHHcCCCCC--h--hchHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 281 MVQNGCSPN--V--VTYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APD----LVFHNVLIDCLSKMGSYDDALDVYDGL 351 (645)
Q Consensus 281 m~~~~~~~~--~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (645)
+.....+.+ . ..+......+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 543211111 0 1122233456788999999999999876421 122 356777888999999999999999887
Q ss_pred HHCCCC-CCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 006437 352 LELKLV-PDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP- 425 (645)
Q Consensus 352 ~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p- 425 (645)
.+.... ++. ......+++.+...|...|++++|++.+++..+. +..+
T Consensus 168 l~~~~~~~~~---------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 168 LDIYQNHPLY---------------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHTSTTC---------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCCc---------------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 652100 000 0012345677778888889999998888877652 1111
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC
Q 006437 426 DNYSFVGLLRGLCGARKIDEAINVYQGIVM-----NNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY----PLD 496 (645)
Q Consensus 426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~ 496 (645)
...++..+..++...|++++|...+++... ..+. ...++..+...|.+.|++++|...+++..+..- +..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 134677788888899999999999999887 4444 377788899999999999999999999886521 112
Q ss_pred hhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
...+..+...+...++ .++|+..+++.. ..| ....+..+...|...|++++|.+.++++.+
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666667777788 777887777632 233 345677888999999999999999998864
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=2.1e-09 Score=98.15 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=129.0
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006437 425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAI 504 (645)
Q Consensus 425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 504 (645)
.|+..+......+...|++++|...|+..++..+.++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35567778888899999999999999999998875577777779999999999999999999999875 44678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHH
Q 006437 505 RGLLEGGRTEEAYILYSQMKHIAVPP-NA-------YTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTK 575 (645)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 575 (645)
..|...|++++|+..+++..+ ..| +. ..|..+...+...|++++|.+.++++++.++.. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999988 455 45 457888888899999999999999998754320 2567778888
Q ss_pred HHHhcCC
Q 006437 576 FIFKFHS 582 (645)
Q Consensus 576 ~~~~~g~ 582 (645)
+|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.2e-09 Score=116.12 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|.+.|++.++..+. +...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46788999999999999999999999998853 234678899999999999999999999999998877 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIK 549 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~ 549 (645)
+|.+.|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+ +.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999875 44688999999999999999999999999998 567 5789999999999999999
Q ss_pred HHHHHHHHHHH
Q 006437 550 MVKRLLQDVID 560 (645)
Q Consensus 550 ~a~~~~~~~~~ 560 (645)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.4e-08 Score=94.31 Aligned_cols=184 Identities=9% Similarity=0.053 Sum_probs=135.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 411 AVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP-AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 411 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
|+..|++..+.+ .++..++..+..++...|++++|.+++.+.+..++ .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788777654 45566666777888888999999999998877765 2367777888999999999999999999987
Q ss_pred HCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 490 VEKYPL-----DVVSYTVAIRG--LLEGG--RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 490 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+. .| +-.+...|+.+ ....| +.++|..+|+++.+ -.|+..+...++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 35 24555566655 33334 89999999999876 356644444555588899999999999987665
Q ss_pred CCC---------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 561 ARI---------ELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 561 ~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..+ .-++.++..++......|+ +|.++++++++ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 310 1267777677777777786 78899999985 567666
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=2e-08 Score=99.47 Aligned_cols=271 Identities=12% Similarity=-0.037 Sum_probs=165.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhchHHHH
Q 006437 227 LNCFCKMGRIAEAYQLLGLMITLGTSLSV----NAWTVLIDGFRRLRRLDMAGYLWEKMVQNGC-SPN----VVTYTSLI 297 (645)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li 297 (645)
...+...|++++|...++.........+. ..++.+...+...|++++|.+.+++.....- ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33445566666666666666554322222 1344555666667777777777766553210 011 12244556
Q ss_pred HHHHhcCChhHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 298 KGFMEAKMFSIAFSFLDMLESE----GHA--P-DLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTV 370 (645)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 370 (645)
..+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.......
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 170 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---------- 170 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG----------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc----------
Confidence 6677777888777777766542 221 2 2334555677788888888888888877653211100
Q ss_pred HhcCCcccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhhHH----HHHHHHHcCCCHH
Q 006437 371 CLSGRFSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD--NYSFV----GLLRGLCGARKID 444 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~ 444 (645)
......+..+...+...|++++|...+++.......++ ..... ..+..+...|+++
T Consensus 171 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 171 ------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp ------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 01123455666777788888888888887765311111 11111 2233466888999
Q ss_pred HHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHH
Q 006437 445 EAINVYQGIVMNNPAV---NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPLDV-VSYTVAIRGLLEGGRTEEA 516 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A 516 (645)
+|...++......... ....+..+...+...|++++|...+++.... +.+++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 9988888876544321 1234567788888899999999988877543 211222 3566677788899999999
Q ss_pred HHHHHHHhh
Q 006437 517 YILYSQMKH 525 (645)
Q Consensus 517 ~~~~~~m~~ 525 (645)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=5.9e-10 Score=105.56 Aligned_cols=224 Identities=12% Similarity=-0.064 Sum_probs=138.5
Q ss_pred hcCCcccHHHHHhc-------C-C-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhhHHHHH
Q 006437 372 LSGRFSLLPKLVCG-------L-E-V-EADLVVYNALLSYFCKAGFPNQAVKLYNTMLDK------GFTP-DNYSFVGLL 434 (645)
Q Consensus 372 ~~~~~~~a~~~~~~-------~-~-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll 434 (645)
..|+++.|...+++ . + . .....++..+...|...|++++|+..+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45667766666521 1 1 1 123556777778888888888888888877653 2122 245677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC-----C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhH
Q 006437 435 RGLCGARKIDEAINVYQGIVMNN-----P--AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE------KYPL-DVVSY 500 (645)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~ 500 (645)
..+...|++++|...+++..... . ......+..+...|...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 77888888888888888776541 1 123556677778888888888888888887765 1112 35567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--H-CC--CCcCH
Q 006437 501 TVAIRGLLEGGRTEEAYILYSQMKHI-------AVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVI--D-AR--IELDY 567 (645)
Q Consensus 501 ~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~-~~--~~~~~ 567 (645)
..+...|...|++++|...++++.+. ...+. ...+..+...+...+....+..+..... + .+ .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 77778888888888888888877642 11222 2233333333333332222222111111 1 11 11245
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 568 HTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 568 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
..+..+..+|.+.|++++|.+++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999874
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.3e-08 Score=83.67 Aligned_cols=129 Identities=12% Similarity=0.166 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFC 543 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 543 (645)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35566677777777888887777776654 3456677777777777788888888888777643 335667777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 544 KERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 544 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
..|++++|.++++++.+..+. +...+..++..+.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 888888888888877765443 566777778888888888888888887764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=6.9e-08 Score=91.70 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCC-c----H
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGA-RKIDEAINVYQGIVMNNPAV-N----A 462 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 462 (645)
+|+.+...|.+.|++++|+..+++..+. |-.. ...++..+...|... |++++|...+++.++..+.. + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555556666666666666666655432 1000 023445555555554 66666666666655432211 0 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV------VSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
.++..+...+.+.|++++|...|+++.+....... ..|..+..++...|++++|+..+++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555566666666666666666666554311111 0344555556666666666666666554
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=1.3e-08 Score=96.14 Aligned_cols=232 Identities=8% Similarity=-0.025 Sum_probs=128.2
Q ss_pred cCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHhHHHHHH
Q 006437 97 TGRFETVRGIVGELARV-------GCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRF------GF-TPNTFARNIVMD 162 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~ 162 (645)
.|+++.|...+++..+. ..+....++..+...|...|++++|...++++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666666666655441 21224556777778888888888888888877643 11 223455666666
Q ss_pred HHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 006437 163 VLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQL 242 (645)
Q Consensus 163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 242 (645)
+|...|++++|.+.|++. ++++++......+....++..+...+...|++++|...
T Consensus 94 ~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 149 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149 (283)
T ss_dssp HHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 676677777766666542 11111111111112244566667777777777777777
Q ss_pred HHHHHHc------C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChh-chHHHHHHHHhcCChh
Q 006437 243 LGLMITL------G-TSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQN-------GCSPNVV-TYTSLIKGFMEAKMFS 307 (645)
Q Consensus 243 ~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~-~~~~li~~~~~~~~~~ 307 (645)
++...+. + .+....++..+...|...|++++|.+.+++..+. ...+... .|..+...+...+...
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 7766653 1 1223456777777777778888887777776642 1122222 2222222222222222
Q ss_pred HHH------HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 308 IAF------SFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 308 ~a~------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (645)
.+. ..++.... .......++..+...+...|++++|...+++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp C------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 12111111 0111234677788888888999999988887765
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=1.2e-08 Score=96.98 Aligned_cols=207 Identities=12% Similarity=0.006 Sum_probs=149.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---C--cHHH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDK----GFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPA---V--NAHV 464 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~ 464 (645)
|......|...|++++|...|.+..+. |-.++ ..+|..+..+|...|++++|...+++.+..... + ...+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344466788899999999999887653 32222 467888999999999999999999988765321 1 1457
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------
Q 006437 465 HTAIVDRLIEA-GRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA------ 532 (645)
Q Consensus 465 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------ 532 (645)
+..+..+|... |++++|...|++.++.... .+ ..+++.+...+.+.|++++|+..|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 78899999996 9999999999998764200 01 356888999999999999999999999874321111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C---HHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCChh
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D---YHTSIRLTKFIF--KFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..+..+..++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|++.++++. .+.|...
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~~ 274 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWKI 274 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHHH
Confidence 256778888999999999999999987643321 1 123445566664 4567888888887775 3555444
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.8e-08 Score=90.27 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=103.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006437 397 ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY-SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEA 475 (645)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 475 (645)
.....+...|++++|+..|++..+. .|+.. .+.. . ... ............+..+|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHHHHC
Confidence 3444566777777777777777664 23322 2211 0 000 00001122223367777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC--HHHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN--IKMVK 552 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~--~~~a~ 552 (645)
|++++|...|++.++.. |.+...|..+...+...|++++|+..|++..+ +.| +..++..+...|...|+ .+.+.
T Consensus 68 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77888887777777664 44567777777777777888888888877777 445 56677777777655543 33344
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 553 RLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..++.+.. +.|....+..+..++...|++++|++.|++.. ...|+..
T Consensus 145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~ 191 (208)
T 3urz_A 145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTE 191 (208)
T ss_dssp HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHH
T ss_pred HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHH
Confidence 44444321 22222233445556666777888888888777 3556544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=4.3e-08 Score=91.50 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD---NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV--NAHVH 465 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 465 (645)
+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+.+++..+.. ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555666677778888888888888887753 112 4566677777888888888888888888775531 24456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 006437 466 TAIVDRLIE--------AGRCHKAIQLFRRAIVEKYPLDVVSY-----------------TVAIRGLLEGGRTEEAYILY 520 (645)
Q Consensus 466 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 520 (645)
..+..++.. .|++++|...|+++++.. |.+.... ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 667777777 788888888888887653 2233333 23344455555555555555
Q ss_pred HHHhhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 006437 521 SQMKHIAVPPN----AYTYRVMLLSFCKE----------RNIKMVKRLLQDVID 560 (645)
Q Consensus 521 ~~m~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~ 560 (645)
+++.+. .|+ ...+..+..+|... |++++|...++++.+
T Consensus 172 ~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 172 EAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 555442 222 23444444444433 445555555555544
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=2.6e-09 Score=90.05 Aligned_cols=139 Identities=10% Similarity=-0.056 Sum_probs=74.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
..|++++|...+.......+. +...+..+...|.+.|++++|.+.|++.++.. |-+..+|..+..+|.+.|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 344555555555554433222 23334445556666666666666666665543 3345566666666666666666666
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437 519 LYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR-LLQDVIDARIELDYHTSIRLTKFIFKFHS 582 (645)
Q Consensus 519 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 582 (645)
.|++..+ +.| +..++..+...|.+.|++++|.+ +++++.+..+. ++..|......+.+.|+
T Consensus 87 ~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 6666655 334 35556666666666666554443 33555554433 45555555555555443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=3.9e-08 Score=80.83 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006437 431 VGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG 510 (645)
Q Consensus 431 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (645)
..+...+...|++++|..+++.+.+..+. +...+..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444455555555555555555544433 34455555566666666666666666665543 33455566666666666
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 511 GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66677766666666532 224556666666666777777777776666553
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=9e-07 Score=90.19 Aligned_cols=383 Identities=13% Similarity=0.058 Sum_probs=200.6
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HhHHH
Q 006437 97 TG-RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR-VDLGI 174 (645)
Q Consensus 97 ~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~ 174 (645)
.| +...|..+|+.+...- |. ++++.+..+|+..... .|++..|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 35 3777788887776652 33 8999999999999875 5799999998888877764 34556
Q ss_pred HHHhhcC------CCChhhHHHHHHHHH----hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHH
Q 006437 175 KVLKETQ------LPNFLSFNIALCNLC----KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK---MGRIAEAYQ 241 (645)
Q Consensus 175 ~~~~~~~------~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~ 241 (645)
.+|+... ..+...|...+.-+. ..++.+.+.++|+..+.. |.. .+..+-..|.. ..+...+.+
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHH
Confidence 6666533 234556666665543 235667788888887763 211 11222222211 111222222
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcC--C-----hhHHHHHHH
Q 006437 242 LLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAK--M-----FSIAFSFLD 314 (645)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~ 314 (645)
+..... +.+..|..+++.+...--..+...|...+.--...+ - .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 222211 123334444444332100012234544444322211 0 344667788
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCcccHHHHHhcCCCCCCHHH
Q 006437 315 MLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRFSLLPKLVCGLEVEADLVV 394 (645)
Q Consensus 315 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (645)
++.... +.+...|...+..+.+.|+.+.|..++++.... |....... .|....+.+..
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~--------------- 261 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV--------------- 261 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---------------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---------------
Confidence 777642 335666777777778888899999999888876 43322111 12221111111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (645)
+..+...+.. ...+.+ .. .. .......|...+....+.++.+.|..+|+.. .. +..+..+|...+..-..
T Consensus 262 ~~~l~~~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 262 YGDLKRKYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp HHHHHHHTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence 1111111100 000000 00 00 0001233444455555566677777777777 22 22334444433333333
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006437 475 AG-RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 475 ~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
.+ +.+.|..+|+...+.- +-++..|...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33 5788888888777652 3334556666666677788888888888862 245666666666667788888888
Q ss_pred HHHHHHH
Q 006437 554 LLQDVID 560 (645)
Q Consensus 554 ~~~~~~~ 560 (645)
+++++.+
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777763
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=4.5e-08 Score=91.40 Aligned_cols=175 Identities=11% Similarity=0.051 Sum_probs=140.1
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhH
Q 006437 425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVN--AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--PLDVVSY 500 (645)
Q Consensus 425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 500 (645)
.+...+..+...+.+.|++++|...|+.++...+... ...+..+..+|.+.|++++|...|+++++... +.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456677777888999999999999999999876521 66788899999999999999999999998641 1124567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 006437 501 TVAIRGLLE--------GGRTEEAYILYSQMKHIAVPPN-AYTY-----------------RVMLLSFCKERNIKMVKRL 554 (645)
Q Consensus 501 ~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~ 554 (645)
..+..++.. .|++++|+..|+++.+ ..|+ .... ..+...|...|++++|...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 788888888 9999999999999987 3453 2333 5668889999999999999
Q ss_pred HHHHHHCCCCc--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCChh
Q 006437 555 LQDVIDARIEL--DYHTSIRLTKFIFKF----------HSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 555 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
++++++..+.. ....+..++.+|... |++++|.+.++++.+. .|+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 99999865432 356788888888876 8899999999999864 45543
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=7.1e-07 Score=90.96 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC------------C
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNN------------P 458 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~ 458 (645)
+...|-..+..+.+.|++++|..++++.... |....+.. .|+.....++. ++.+...- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 4566777777777888899999999988876 44333222 12211111111 22222110 0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCC-CHHHHH
Q 006437 459 AVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE-GGRTEEAYILYSQMKHIAVPP-NAYTYR 536 (645)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 536 (645)
.....+|...+....+.++.+.|..+|+++ ... +.+...|-..+..-.. .++.+.|..+|+...+. .| ++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHH
Confidence 112345667777777888999999999999 321 1233444332222222 33699999999998874 24 455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
..++-....|+.+.|..+|+.+. -....|...+..-...|+.+.+.++++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777788999999999999872 2578899999888899999999998888764
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=9.5e-08 Score=85.78 Aligned_cols=177 Identities=12% Similarity=0.047 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006437 410 QAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG----RCHKAIQLF 485 (645)
Q Consensus 410 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 485 (645)
+|++.|++..+.| +...+..+...+...+++++|...|++..+.+ +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566777776664 56666677777777788888888888877765 55666677777776 5 788888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 006437 486 RRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPN---AYTYRVMLLSFCK----ERNIKMVKRL 554 (645)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~ 554 (645)
++..+.+ +...+..|...|.. .+++++|+.+|++..+.| |+ ...+..|...|.. .+++++|..+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8887765 67777777777776 778888888888887754 32 6777778888877 7788888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCCCC
Q 006437 555 LQDVIDARIELDYHTSIRLTKFIFKF-H-----SSSSAVNQLVEMCNLGLIP 600 (645)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~p 600 (645)
+++..+.+ .++..+..|...|... | +.++|.+++++..+.|...
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 88887762 2445667777777653 3 7888888888888776433
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=4.9e-07 Score=84.07 Aligned_cols=145 Identities=9% Similarity=0.079 Sum_probs=110.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 204 VKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGT-SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 204 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
|+..|++..+.+ .++..++..+..++...|++++|++++...+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 45666667888889999999999999998876654 2366788888999999999999999999998
Q ss_pred HcCCCC-----ChhchHHHHHHH--HhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 283 QNGCSP-----NVVTYTSLIKGF--MEAK--MFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 283 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (645)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 355556666563 3334 899999999998775 34533444555589999999999999987654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=2e-08 Score=87.31 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=117.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 006437 430 FVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LL 508 (645)
Q Consensus 430 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 508 (645)
+......+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 445556677788888888888887776655 66777888888888888888888888876653 344333322212 12
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSA 586 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 586 (645)
..+...+|+..+++..+ ..| +...+..+...+...|++++|...++++.+..+.+ +...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233457888888877 456 57888888899999999999999999998876653 466788888999999999999
Q ss_pred HHHHHHHH
Q 006437 587 VNQLVEMC 594 (645)
Q Consensus 587 ~~~~~~m~ 594 (645)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888775
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=9.1e-08 Score=85.64 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhcCCcccHHHHHhc-CCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006437 362 TFCSLLSTVCLSGRFSLLPKLVCG-LEVEADL-VVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCG 439 (645)
Q Consensus 362 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 439 (645)
.+......+...|++++|...|+. ....|+. ..|.. .... ............+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----~~~~--------------~~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW-----TNVD--------------KNSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH-----HHSC--------------TTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-----hhhc--------------chhhhhHHHHHHHHHHHHH
Confidence 334445567789999999999844 2233332 11211 0000 0011112233446777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHH
Q 006437 440 ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR--TEEAY 517 (645)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~ 517 (645)
.|++++|...+++.++..+. +...+..+..++...|++++|...|+++++.. |.+..+|..+...|...|+ .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88999999988888888776 77788888888999999999999999888875 4467788888888766553 34455
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437 518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRL 573 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 573 (645)
..++.... ..|....+.....++...|++++|...|+++++.. |+......+
T Consensus 145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l 196 (208)
T 3urz_A 145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTL 196 (208)
T ss_dssp HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHH
T ss_pred HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 55555532 22333344555666677888999999999888744 454444333
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=4.6e-08 Score=92.57 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=135.5
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-H
Q 006437 425 PDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTV-A 503 (645)
Q Consensus 425 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l 503 (645)
.+...+..+...+...|++++|...+++.....+. +...+..+...+.+.|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34556667777888999999999999999998877 77888899999999999999999999887664 45443322 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcC
Q 006437 504 IRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-DYHTSIRLTKFIFKFH 581 (645)
Q Consensus 504 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 581 (645)
...+.+.++.++|+..+++..+. .| +...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33466778888899999998874 45 68889999999999999999999999999866542 3778999999999999
Q ss_pred ChhHHHHHHHHHH
Q 006437 582 SSSSAVNQLVEMC 594 (645)
Q Consensus 582 ~~~~A~~~~~~m~ 594 (645)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999888865
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.3e-08 Score=109.00 Aligned_cols=173 Identities=11% Similarity=-0.018 Sum_probs=145.4
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006437 403 CKAGFPNQAVKLYNTML--------DKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIE 474 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (645)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++++..+. +...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 33 2334567888888999999999999999999998776 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++ ++.|++..+ +.| +...+..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999875 4468889999999999999999 999999988 456 67889999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 006437 554 LLQDVIDARIELDYHTSIRLTKFIFKFHS 582 (645)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 582 (645)
.++++.+.++. +...+..+..++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99998875543 46777788888766555
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=5.3e-08 Score=102.35 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=108.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006437 405 AGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQL 484 (645)
Q Consensus 405 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 484 (645)
.|++++|+..+++..+.. +-+...+..+...+...|++++|.+.+++..+..+. +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888877652 234667777888888888888888888888877665 677788888888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006437 485 FRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE---RNIKMVKRLLQDVID 560 (645)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 560 (645)
+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+. .| +...+..+...+... |++++|.+.++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 88888764 445778888888888888888888888888773 44 567788888888888 888888888888887
Q ss_pred CCCC
Q 006437 561 ARIE 564 (645)
Q Consensus 561 ~~~~ 564 (645)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6554
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.6e-07 Score=85.32 Aligned_cols=186 Identities=9% Similarity=-0.025 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFT-PD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNA--HVHTA 467 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 467 (645)
...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788888888888888888875311 11 245667777888888888888888888887665322 23444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 006437 468 IVDRLIE------------------AGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVP 529 (645)
Q Consensus 468 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 529 (645)
+..++.+ .|++++|...|+++++.. |-+...+....... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH-----
Confidence 4444443 344555555555555432 11222221111000 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 530 PNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 530 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.....+...+.+.|++++|...++++++..+..+ ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0113456678899999999999999988654421 357888999999999999999999998864
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=4.1e-07 Score=82.55 Aligned_cols=183 Identities=10% Similarity=-0.021 Sum_probs=125.8
Q ss_pred CHhhHHHHHHHHHhcCCcccHHHHHhcCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----h
Q 006437 359 DSYTFCSLLSTVCLSGRFSLLPKLVCGLE-VEAD----LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNY----S 429 (645)
Q Consensus 359 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~ 429 (645)
+...+..+...+...|++++|...|+..- ..|+ ...+..+..+|.+.|++++|+..|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34455667778899999999999995431 1222 4577888899999999999999999998853 3322 3
Q ss_pred HHHHHHHHHc------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 430 FVGLLRGLCG------------------ARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE 491 (645)
Q Consensus 430 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 491 (645)
+..+..++.. .|+.++|...|+.+++..+. +.....+.... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH---
Confidence 4444444443 57899999999999988765 33222221110 0011111
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 492 KYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA----YTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
......+...|.+.|++++|+..|+++.+ ..|+. ..+..+..++.+.|+.++|.+.++.+...++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778888999999999999887 34542 46788888999999999999999988876543
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=5.4e-08 Score=104.09 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=139.8
Q ss_pred HcCCCHHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006437 438 CGARKIDEAINVYQGIV--------MNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE 509 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (645)
...|++++|.+.+++.. +..+. +...+..+..++.+.|++++|.+.|+++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 54444 67788889999999999999999999999875 4578899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 510 GGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.|++++|++.|++..+ +.| +...+..+..++...|++++ .+.++++.+.++. +...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998 456 67889999999999999999 9999999987765 78899999999999999999999
Q ss_pred HHHHHHHCCCCCChh
Q 006437 589 QLVEMCNLGLIPDEM 603 (645)
Q Consensus 589 ~~~~m~~~g~~p~~~ 603 (645)
.++++. ...|+..
T Consensus 556 ~~~~al--~l~P~~~ 568 (681)
T 2pzi_A 556 TLDEVP--PTSRHFT 568 (681)
T ss_dssp HHHTSC--TTSTTHH
T ss_pred HHHhhc--ccCcccH
Confidence 999997 4567655
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=4.1e-07 Score=81.62 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCCCcHHHH
Q 006437 390 ADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR----KIDEAINVYQGIVMNNPAVNAHVH 465 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 465 (645)
.++..+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+.+ +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356677777888888999999999999998876 55667777777777 6 8999999999998765 66777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437 466 TAIVDRLIE----AGRCHKAIQLFRRAIVEKYP-LDVVSYTVAIRGLLE----GGRTEEAYILYSQMKHIAVPPNAYTYR 536 (645)
Q Consensus 466 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 536 (645)
..+...|.. .+++++|.+.|++..+.+.. .++..+..|...|.. .++.++|+..|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999987611 027888999999988 78999999999999884 34556777
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHHCCCC
Q 006437 537 VMLLSFCKE-R-----NIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 537 ~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 564 (645)
.|...|... | +.++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 888888653 3 899999999999887743
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=2.9e-06 Score=79.75 Aligned_cols=211 Identities=9% Similarity=-0.009 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH----HcC---CCHHHHHHHHHHHHHcCCCCcH
Q 006437 392 LVVYNALLSYFCKAG--FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGL----CGA---RKIDEAINVYQGIVMNNPAVNA 462 (645)
Q Consensus 392 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~ 462 (645)
...|+.--..+...| ++++++..++.+.....+ +...++.--..+ ... ++++++..+++.+.+..++ +.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny 144 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NH 144 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CH
Confidence 445666666666677 899999999998875322 223333322222 334 7889999999999998877 88
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCC-CHH
Q 006437 463 HVHTAIVDRLIEAGRCH--KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR------TEEAYILYSQMKHIAVPP-NAY 533 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~p-~~~ 533 (645)
.+|+.-.-++.+.|.++ ++++.++++++.+ +-|...|+.-...+.+.++ ++++++.++++.. ..| |..
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~S 221 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPS 221 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCcc
Confidence 88888777788888888 9999999999876 4578888888887777776 8999999999887 445 788
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh--hhHHH
Q 006437 534 TYRVMLLSFCKERN-IKMVKRLLQDVIDAR--IELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM--WRKLG 608 (645)
Q Consensus 534 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--w~~~~ 608 (645)
.|+.+...+.+.|+ .+.+..+.+++.+.+ -..++..+..++++|.+.|+.++|+++++.+.+. +.|-.. |.+..
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~~ 300 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHHH
Confidence 89888888888887 444556776665533 1227888999999999999999999999998742 566555 66543
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=2.3e-08 Score=84.17 Aligned_cols=141 Identities=10% Similarity=-0.014 Sum_probs=112.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437 401 YFCKAGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (645)
.+...|++++|+..++..... .|+ ...+..+...|...|++++|.+.|++.++..+. +...+..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344567888999888887654 233 455667888899999999999999999998877 7889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437 480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYIL-YSQMKHIAVPP-NAYTYRVMLLSFCKERN 547 (645)
Q Consensus 480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 547 (645)
+|...|+++++.. |-+...|..+...|.+.|+.++|.+. +++..+ +.| ++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999875 44688899999999999998876665 588877 567 56677766666666664
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=5.4e-07 Score=85.15 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHH-HH
Q 006437 116 VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNI-AL 192 (645)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-ll 192 (645)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++.. .|+...... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4456677788888889999999999999988764 5577888889999999999999999999886 344432222 22
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCH
Q 006437 193 CNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRL 271 (645)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 271 (645)
..+.+.++.++|...+++..+.. +.+...+..+...+...|++++|...|..+.+..+.. +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33567778888888888887764 3356778888888888888888888888888764332 256778888888888888
Q ss_pred HHHHHHHHHHH
Q 006437 272 DMAGYLWEKMV 282 (645)
Q Consensus 272 ~~a~~~~~~m~ 282 (645)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88877777654
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=1.8e-07 Score=98.27 Aligned_cols=152 Identities=12% Similarity=-0.042 Sum_probs=115.6
Q ss_pred cCCcccHHHHHhc-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006437 373 SGRFSLLPKLVCG-LEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVY 450 (645)
Q Consensus 373 ~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 450 (645)
.|++++|.+.+++ ....| +...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677888888844 33444 47788888999999999999999999988863 335678888888999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCC
Q 006437 451 QGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG---GRTEEAYILYSQMKHIA 527 (645)
Q Consensus 451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~ 527 (645)
++..+..+. +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999988766 67888899999999999999999999998875 44678888999999999 99999999999988743
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=3.7e-07 Score=79.14 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHH-HHhc
Q 006437 122 FLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCN-LCKL 198 (645)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~-~~~~ 198 (645)
+......+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++.. .|+...+...... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4455566677777777777777766543 4456677777777777777777777777765 2233222221111 1122
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHhHHHHHHHHHhcCCHHHHHHH
Q 006437 199 NDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSL-SVNAWTVLIDGFRRLRRLDMAGYL 277 (645)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 277 (645)
+...+|+..+++..+.. +-+...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 33344566666665542 1245566666667777777777777777666654332 244566666666666777666666
Q ss_pred HHHHH
Q 006437 278 WEKMV 282 (645)
Q Consensus 278 ~~~m~ 282 (645)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=4.7e-07 Score=73.30 Aligned_cols=106 Identities=10% Similarity=0.078 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF 542 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 542 (645)
.+......|.+.|++++|.+.|++.++.. |.+...|..+..+|.+.|++++|+..+++..+ +.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHH
Confidence 34455666666666666666666666553 34566666666666666666666666666665 333 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 006437 543 CKERNIKMVKRLLQDVIDARIELDYHTSIRL 573 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 573 (645)
...|++++|.+.|++.++..+. +...+..|
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 6666666666666666665443 44444444
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=1.9e-05 Score=74.26 Aligned_cols=214 Identities=11% Similarity=0.006 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHH----Hhc---CCHh
Q 006437 101 ETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE--MYGMVLEAFDEMGRFGFTPNTFARNIVMDVL----FKI---GRVD 171 (645)
Q Consensus 101 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~~ 171 (645)
++|+.+++.+.... +-+...++.--..+...+ +++++++.++.+.... +.+..+|+.--.++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555543 223333444444444444 5666666666665543 33444555443333 333 4455
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHhcCCcc--hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------HHHHH
Q 006437 172 LGIKVLKETQ---LPNFLSFNIALCNLCKLNDVS--NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR------IAEAY 240 (645)
Q Consensus 172 ~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~ 240 (645)
+++++++++. +.|..+|+--.-.+.+.|.++ ++++.++.+.+.+.. |...|+.-...+...+. ++++.
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 5555555443 334444444444444445555 555556555554322 44445444444444443 55555
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHcC--CCCChhchHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 241 QLLGLMITLGTSLSVNAWTVLIDGFRRLRRLD-MAGYLWEKMVQNG--CSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLE 317 (645)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (645)
+.++.++... +-|...|+.+-..+.+.|+.. .+..+.+++.+.+ -+.+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5555555543 225555555555555554422 2333444333211 11234444555555555555555555555554
Q ss_pred h
Q 006437 318 S 318 (645)
Q Consensus 318 ~ 318 (645)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 3
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.2e-06 Score=74.96 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445667777888888888888888887764 4467788888888888999999999998888742 3367788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 006437 542 FCKERNIKMVKRLLQDVIDARIELDYHTSIR--LTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+...|++++|.+.++++.+..+. +...+.. ++..+.+.|++++|++.+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999988876544 4455533 3444778889999998888765
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.4e-06 Score=70.06 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455566666666777777777777666543 3355666666677777777777777777766532 2355666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 006437 542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFK 579 (645)
Q Consensus 542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (645)
+...|++++|...++++.+..+. +...+..+...+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 77777777777777776665433 45555555554443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=1.3e-06 Score=78.34 Aligned_cols=124 Identities=10% Similarity=-0.010 Sum_probs=62.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437 432 GLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG 511 (645)
Q Consensus 432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 511 (645)
.+...+...|++++|...+++.. .++...+..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33444455555555555555442 3344555555555555555555555555555443 234445555555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 512 RTEEAYILYSQMKHIAVPPNA----------------YTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
++++|+..|++..+.. +.+. ..+..+..++...|++++|.+.++++.+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555421 1111 44445555555555555555555555443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=2.7e-06 Score=80.68 Aligned_cols=162 Identities=7% Similarity=0.021 Sum_probs=114.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCC-CcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 006437 434 LRGLCGARKIDEAINVYQGIVMNNPA-VNA----HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVA 503 (645)
Q Consensus 434 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 503 (645)
+..+...|++++|..++++....... ++. ..+..+...+...|++++|...++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44556667777777777766654322 221 12334666677777888888888888774322 22 2368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 006437 504 IRGLLEGGRTEEAYILYSQMKH----I-AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIELD-YHTSIR 572 (645)
Q Consensus 504 ~~~~~~~g~~~~A~~~~~~m~~----~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 572 (645)
...|...|++++|+..++++.+ . +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8899999999999999988773 1 1222 2347888999999999999999999988742 22222 678999
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 006437 573 LTKFIFKFHS-SSSAVNQLVEMCN 595 (645)
Q Consensus 573 l~~~~~~~g~-~~~A~~~~~~m~~ 595 (645)
++.+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999995 5999999988763
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=4.9e-07 Score=86.48 Aligned_cols=192 Identities=13% Similarity=-0.002 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--cHH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDK----GFTP-DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP---AV--NAH 463 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 463 (645)
.|+.....|...|++++|...|.+..+. +-.+ -..+|..+...|...|++++|...+++.+.... .+ ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677788888888888888776653 1111 134667777777788888888888887765421 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPL-D----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPPN-AY 533 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~ 533 (645)
++..+..+|.. |++++|++.|++.++..... + ..+++.+...|.+.|++++|+..|++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 56667777777 88888888888877642110 1 356777778888888888888888887652 11111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHhcCChhHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIELD-Y---HTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.+..+...+...|++++|...+++.. ..+... . .....++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 55556666677788888888888877 433222 1 1233444444 4566655555
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=2.3e-06 Score=76.71 Aligned_cols=123 Identities=7% Similarity=-0.087 Sum_probs=59.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437 397 ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476 (645)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (645)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++.+...+. +...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444445555555555554432 334444444555555555555555555555444433 3444445555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 477 RCHKAIQLFRRAIVEKYPLDV----------------VSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
++++|.+.|+++.+.. +.+. ..+..+..+|.+.|++++|...+++..+
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555554432 1111 3444455555555555555555555544
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=6.5e-06 Score=78.05 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=125.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc----HHH
Q 006437 395 YNALLSYFCKAGFPNQAVKLYNTMLDKG-FTPDNY----SFVGLLRGLCGARKIDEAINVYQGIVMNNPA-VN----AHV 464 (645)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 464 (645)
+...+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++...... .+ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677889999999999999988743 222321 2334566667788999999999999885322 22 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVE-----KYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKH----IAVPPN-AY 533 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~ 533 (645)
++.+..+|...|++++|...|+++.+. +..+ ...+|..+...|.+.|++++|+..+++..+ .+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 889999999999999999999998842 1112 245788999999999999999999998764 222232 67
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKER-NIKMVKRLLQDVID 560 (645)
Q Consensus 534 ~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 560 (645)
+|..+..++.+.| ++++|.+.++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999999 46999999988764
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=8.3e-07 Score=74.15 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
...+..+...+.+.|++++|+..|++..+ +.| +...|..+..+|...|++++|...++++.+.++. ++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44555666666666666666666666665 334 4566666666666666666666666666665544 4556666666
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006437 576 FIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 576 ~~~~~g~~~~A~~~~~~m~~ 595 (645)
+|.+.|++++|++.|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666664
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=2.3e-06 Score=69.47 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=84.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL 540 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 540 (645)
+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455666677777777777777777777653 3456677777777778888888888888777632 225667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 006437 541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSS 583 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 583 (645)
.+...|++++|.+.++++.+..+. +...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 788888888888888877775543 566777777777776654
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=7.2e-06 Score=77.73 Aligned_cols=163 Identities=7% Similarity=-0.002 Sum_probs=109.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hhhHH
Q 006437 432 GLLRGLCGARKIDEAINVYQGIVMNNPAVN-----AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP---LD--VVSYT 501 (645)
Q Consensus 432 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~ 501 (645)
..+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+.... +. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455566666666666666555433211 112334556667778888888888887754211 11 44788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----Cc-CHHHH
Q 006437 502 VAIRGLLEGGRTEEAYILYSQMKHI-AVPPN-----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARI----EL-DYHTS 570 (645)
Q Consensus 502 ~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~~~ 570 (645)
.+...|...|++++|+..+++..+. ...|+ ..++..+...|...|++++|.+.+++..+... .. -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888889999998888887621 01222 25788888888999999999999888775321 11 16778
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHH
Q 006437 571 IRLTKFIFKFHSSSSA-VNQLVEMC 594 (645)
Q Consensus 571 ~~l~~~~~~~g~~~~A-~~~~~~m~ 594 (645)
..++.+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8888999999999999 67677764
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=5.6e-06 Score=78.51 Aligned_cols=167 Identities=13% Similarity=0.014 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---Cc--HH
Q 006437 394 VYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPD-N----YSFVGLLRGLCGARKIDEAINVYQGIVMNNPA---VN--AH 463 (645)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 463 (645)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|...+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778899999999999998877532211 1 22334555667889999999999998764322 12 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVE--KYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA 532 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 532 (645)
+++.+...|...|++++|...|+++.+. ..+.+ ..+++.+...|.+.|++++|+..+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998732 11111 258899999999999999999999997642 1111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006437 533 YTYRVMLLSFCKERNIKMV-KRLLQDVID 560 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 560 (645)
.+|..+...|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777887753
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=2e-06 Score=69.54 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=75.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
.+......+.+.|++++|.+.|++.++..+. +...+..+..+|.+.|++++|+..|++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4455566677777777777777777776655 66777777778888888888888888777764 445777888888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPN-AYTYRVM 538 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 538 (645)
..|++++|++.|++..+ +.|+ ...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 88888888888888877 5563 4444333
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=1.9e-06 Score=71.96 Aligned_cols=93 Identities=13% Similarity=-0.046 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFC 543 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 543 (645)
+..+...+.+.|++++|...|++++... |.+...|..+..+|...|++++|+..|++..+ +.| ++..|..+..+|.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence 3334444444444444444444444432 22344444444444455555555555554444 223 3444444444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006437 544 KERNIKMVKRLLQDVID 560 (645)
Q Consensus 544 ~~g~~~~a~~~~~~~~~ 560 (645)
..|++++|...|+++.+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=9.5e-07 Score=78.52 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=98.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCH
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYP-LDVVSYTVAIRGLLEGGRT 513 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 513 (645)
..|++++|.++++.+.. .+......+..+...+...|++++|...+++..+. +.+ ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433322 22234556666777777777777777777766542 111 1345677777778888888
Q ss_pred HHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCC
Q 006437 514 EEAYILYSQMKHI----AVPP--NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHS 582 (645)
Q Consensus 514 ~~A~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 582 (645)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +.. .-...+..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776542 1111 1345677777888888888888888877642 111 113346777888888888
Q ss_pred hhHHHHHHHHHHHC
Q 006437 583 SSSAVNQLVEMCNL 596 (645)
Q Consensus 583 ~~~A~~~~~~m~~~ 596 (645)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.3e-06 Score=69.85 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLL 540 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 540 (645)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455556666666666666666666666543 3355666666666666777777777777666532 224566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 006437 541 SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 581 (645)
.+...|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 677777777777777766664433 3445555555555444
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1.1e-06 Score=76.21 Aligned_cols=120 Identities=10% Similarity=0.145 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH--HH
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRG-LLEGGRT--EE 515 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 515 (645)
..|++++|...++..+...+. +...+..+..+|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445566666666665555443 44555556666666666666666666655543 2344555555555 4555555 66
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 516 AYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 516 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 562 (645)
|...++++.+. .| +...+..+...+...|++++|...++++.+..
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 66666665552 23 34555555555666666666666666655543
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=3.8e-07 Score=76.29 Aligned_cols=94 Identities=11% Similarity=-0.070 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF 542 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 542 (645)
.+..+...+.+.|++++|...|++++... +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 34444455555555555555555554443 23444555555555555555555555555544 223 344444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006437 543 CKERNIKMVKRLLQDVID 560 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~ 560 (645)
...|++++|.+.++++.+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=2e-06 Score=83.16 Aligned_cols=130 Identities=8% Similarity=0.022 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD---------------VVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+...+..+...|.+.|++++|...|++.++.. +.+ ...|..+..+|.+.|++++|+..+++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777788888888887777654 222 47888888889999999999999999887
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006437 526 IAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA-VNQLVEMC 594 (645)
Q Consensus 526 ~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 594 (645)
. .| +...+..+..+|...|++++|...|+++++..+. +...+..+..++.+.|+.++| .+.+++|.
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45 6788888889999999999999999998887655 677888888889888988888 44666664
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=4.4e-06 Score=71.27 Aligned_cols=127 Identities=14% Similarity=0.060 Sum_probs=88.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLL 508 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (645)
.+..+...+...|++++|...++......+. +...+..+..++...|++++|...+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555666677777777777777666544 56667777777888888888888888777664 445677788888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006437 509 EGGRTEEAYILYSQMKHIAVPP-NAYTYRVM--LLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~ 559 (645)
..|++++|...++++.+. .| +...+..+ ...+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888887763 34 44444333 333667788888888877654
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=6.3e-07 Score=74.95 Aligned_cols=97 Identities=6% Similarity=-0.024 Sum_probs=61.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLT 574 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 574 (645)
+...+..+...+.+.|++++|+..|++... ..| +...|..+..+|...|++++|...++++.+.++. ++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 344555566666666677777766666665 234 5566666666666666777777666666665443 455666666
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006437 575 KFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.+|...|++++|.+.+++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666777777666666654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=7.4e-07 Score=83.86 Aligned_cols=196 Identities=8% Similarity=-0.025 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 391 DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567777888999999999999999988853 236778888889999999999999999999888765 7788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 550 (645)
+|...|++++|...|+++.+.. +.+...+...+....+. .++.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999987653 11111222222222211 11111 2222233344455554444332 3688899
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 006437 551 VKRLLQDVIDARIELDYHTSIRLTKFIFKF-HSSSSAVNQLVEMCNL 596 (645)
Q Consensus 551 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 596 (645)
|.+.+++..+..+. +......+...+.+. +++++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99888887765432 444555555556555 6788999999988653
No 137
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.47 E-value=4.4e-06 Score=79.80 Aligned_cols=188 Identities=9% Similarity=-0.022 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHhcCCcccHHHHHh-------cCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C-CCC--H
Q 006437 361 YTFCSLLSTVCLSGRFSLLPKLVC-------GLEVEA-DLVVYNALLSYFCKAGFPNQAVKLYNTMLDKG--F-TPD--N 427 (645)
Q Consensus 361 ~~~~~ll~~~~~~~~~~~a~~~~~-------~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~--~ 427 (645)
..|......|...|++++|...+. ..+... -...|+.+...|.+.|++++|+..|++..+.- . .+. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356667777888888888877762 222111 13467778888888899999999888766531 0 111 3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-h
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-----NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPLD-V 497 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~ 497 (645)
.++..+...|.. |++++|...+++.+...... ...++..+...|.+.|++++|...|++..+.. ..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 456677777777 99999999988877653211 14567778888889999999999988887641 1111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN------AYTYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~ 553 (645)
..+..+..++...|++++|...|++.. . .|+ ...+..++.++ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 356666677777899999999998887 3 232 12344445544 4566655544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=3.9e-07 Score=80.82 Aligned_cols=133 Identities=10% Similarity=-0.051 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDV----------------VSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
...+..+...+.+.|++++|...|++.++.. +.+. ..|..+..+|.+.|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3345556677777788888888887777643 1122 6788888889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCC
Q 006437 526 IAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAV-NQLVEMCNLG 597 (645)
Q Consensus 526 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 597 (645)
.. +.+...+..+..+|...|++++|.+.+++..+..+. +...+..+..++...++.+++. ..+..|...|
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 42 336788888899999999999999999999886554 6778888888888888777776 5666665444
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=8.3e-06 Score=65.43 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
..+..+...+...|++++|.+.++++....+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34445555555566666666666665555433 44556666666666777777777776666543 34566666777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFC 543 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 543 (645)
...|++++|...++++.+. .| +...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 7777777777777776653 34 4444444444443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=6.5e-07 Score=84.24 Aligned_cols=190 Identities=16% Similarity=0.043 Sum_probs=128.9
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006437 426 DNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIR 505 (645)
Q Consensus 426 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 505 (645)
+...+..+...+...|++++|...++..+...+. +...+..+..+|.+.|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556777888889999999999999999988766 78889999999999999999999999998774 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 006437 506 GLLEGGRTEEAYILYSQMKHIAVPPNA-YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSS 584 (645)
Q Consensus 506 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 584 (645)
+|...|++++|+..|++..+ +.|+. ..+...+....+. ..+.. +..........+......+...+ .|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 99999999999999999876 33421 1111122221111 11112 22233334444555555554433 68899
Q ss_pred HHHHHHHHHHHCCCCCChhhhHHHhh--h----cccCCccccccccccc
Q 006437 585 SAVNQLVEMCNLGLIPDEMWRKLGLL--S----DETMTPVSLFDGFVPC 627 (645)
Q Consensus 585 ~A~~~~~~m~~~g~~p~~~w~~~~~L--~----~~~~~~~~~~~~~~~~ 627 (645)
+|++.+++.. ...|+..+....+- . +...++.+++....+.
T Consensus 153 ~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNH--EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGG--TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhh--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887 45777652222221 1 3344566666555443
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=7.7e-06 Score=74.98 Aligned_cols=187 Identities=12% Similarity=-0.041 Sum_probs=119.6
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhhcCChhHHHHHHHHHHH------------cCCC---
Q 006437 59 NCPSDLIALSFFIWCAKQRDYFHDVQSFDHM-------ISVVTRLTGRFETVRGIVGELAR------------VGCV--- 116 (645)
Q Consensus 59 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~~a~~~~~~m~~------------~~~~--- 116 (645)
..+++..|.+.|..+....+ -....|.-+ ..++.+ .++..++...+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~-~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFR-AWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHH-HHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHH-HHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 46789999999999888655 478888877 455555 3444555444444333 1100
Q ss_pred -----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCC-CCh----h
Q 006437 117 -----IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQL-PNF----L 186 (645)
Q Consensus 117 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~----~ 186 (645)
--..........+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+.... ++. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 012334456667778888888888888777643 3332555566677788888888888876542 222 2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPN--VRMFEILLNCFCKMGRIAEAYQLLGLMITLG 250 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (645)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455666677777777788777777764322143 2345556666777777777777777777653
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=6.2e-06 Score=75.63 Aligned_cols=191 Identities=10% Similarity=-0.019 Sum_probs=134.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HhhHHHH-------HHHHHcCCCHHHHHHHHHHHHHcCC-----CCc---------
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPD-NYSFVGL-------LRGLCGARKIDEAINVYQGIVMNNP-----AVN--------- 461 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~--------- 461 (645)
..++...|.+.|.+..+.. |+ ...|..+ ...+.+.++..++...+.......+ ..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5788999999999988853 33 3445544 2333333334444444443333110 001
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HH
Q 006437 462 ------AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN--AY 533 (645)
Q Consensus 462 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~ 533 (645)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 2344567788899999999999999887654 543366666678889999999999998665421 121 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVIDARIEL--DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPD 601 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 601 (645)
.+..+..++...|++++|+..|++.......| ..........++.+.|+.++|.++|+++.+. .|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 78888999999999999999999998544324 3456778888999999999999999999965 455
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6e-06 Score=66.72 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF 542 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 542 (645)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+ +.| +...+..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 44455556666666666666666666553 33556666666666666666666666666665 334 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006437 543 CKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~~ 561 (645)
...|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666666653
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=7.2e-06 Score=66.46 Aligned_cols=116 Identities=20% Similarity=0.140 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
..+..+...+...|+++.|...++......+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444555555666666666666666555443 45556666666667777777777777666553 33466666777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERN 547 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 547 (645)
...|++++|...+++..+. .| +...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 7777777777777776663 34 55566666666665554
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=5e-06 Score=67.73 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555555555555555555555555432 123344444444444455555555555544444332 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006437 472 LIEAGRCHKAIQLFRRAIV 490 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~ 490 (645)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.3e-06 Score=72.47 Aligned_cols=95 Identities=12% Similarity=-0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSF 542 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~ 542 (645)
.+..+...+.+.|++++|...|+++.... |.+...|..+..+|.+.|++++|+..|++..+. .| +...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34445556666666666666666666553 335666666666666667777777776666653 33 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006437 543 CKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 543 ~~~g~~~~a~~~~~~~~~~ 561 (645)
...|++++|.+.++++.+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6667777777666666653
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=4.8e-06 Score=67.39 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHHHHHH
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPN----AYTYRVM 538 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l 538 (645)
+..+...+.+.|++++|++.|++.++.. |.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555555556666666655555543 3345555555555556666666665555554311 0011 1244445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006437 539 LLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 539 l~~~~~~g~~~~a~~~~~~~~~ 560 (645)
..++...|++++|++.+++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00024 Score=67.41 Aligned_cols=66 Identities=8% Similarity=-0.051 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 006437 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR-------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR 512 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 512 (645)
++.+.++++++..+. |...|+.....+.+.++ ++++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 185 eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 185 SELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 455555555555444 44445444444444443 455555555555443 3355555555555544443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=6e-06 Score=79.87 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
...+..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 4677888889999999999999999988875 45788899999999999999999999999888 456 6778888888
Q ss_pred HHHhcCCHHHH-HHHHHHHH
Q 006437 541 SFCKERNIKMV-KRLLQDVI 559 (645)
Q Consensus 541 ~~~~~g~~~~a-~~~~~~~~ 559 (645)
++...|+.++| ..+++.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888 44566554
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=2.3e-06 Score=74.13 Aligned_cols=125 Identities=8% Similarity=0.103 Sum_probs=97.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCCH--H
Q 006437 403 CKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR-LIEAGRC--H 479 (645)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 479 (645)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.....+. +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 35677888888888877753 345677888888888999999999999998887665 66777788888 7788998 9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006437 480 KAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNA 532 (645)
Q Consensus 480 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 532 (645)
+|...++++.+.. +.+...+..+...|...|++++|...++++.+ ..|+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence 9999999988775 44678888889999999999999999999887 44543
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=0.00022 Score=67.67 Aligned_cols=170 Identities=11% Similarity=0.040 Sum_probs=95.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc-C-CHhHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE-MYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKI-G-RVDLG 173 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A 173 (645)
....++|+++++.+.... +-+...++.--..+...+ ++++++..++.+.... +.+..+|+.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344456666666666654 234444554444455555 4777777777777654 45666666666666555 5 66677
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHhcCCcc--------hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------
Q 006437 174 IKVLKETQL---PNFLSFNIALCNLCKLNDVS--------NVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR------- 235 (645)
Q Consensus 174 ~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------- 235 (645)
+++++++.. .|..+|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence 777766653 33344444443444444444 66666666666542 255566665555555554
Q ss_pred HHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCC
Q 006437 236 IAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRR 270 (645)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 270 (645)
++++.+.++..+... +-|...|+.+-..+.+.|.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 456666666666553 2255556555544444443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.6e-05 Score=62.88 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK 544 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 544 (645)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444455555555554444432 2234444444444444455555555554444421 1134444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 006437 545 ERNIKMVKRLLQDVID 560 (645)
Q Consensus 545 ~g~~~~a~~~~~~~~~ 560 (645)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4555555555444444
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=5.3e-05 Score=71.60 Aligned_cols=201 Identities=12% Similarity=0.072 Sum_probs=150.3
Q ss_pred HHcCChH-HHHHHHHHHHHCCCCCCHhh-HHH---HHHHHHcC-------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006437 403 CKAGFPN-QAVKLYNTMLDKGFTPDNYS-FVG---LLRGLCGA-------RKIDEAINVYQGIVMNNPAVNAHVHTAIVD 470 (645)
Q Consensus 403 ~~~g~~~-~a~~~~~~m~~~~~~p~~~~-~~~---ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 470 (645)
.+.|.++ +|+.+++.+... .|+..| ++. ++...... ..++++..+++.+...+++ +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3455554 789999888875 455433 322 22222221 1267889999999988887 7778887777
Q ss_pred HHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 006437 471 RLIEAG--RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGR-TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKE-- 545 (645)
Q Consensus 471 ~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-- 545 (645)
++.+.+ .+++++.+++++.+.. +-|..+|+.-...+...|. ++++++.++++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 777777 4899999999999876 5688899988888888888 699999999999843 33778888777776655
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCh
Q 006437 546 ------------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF-----------HSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 546 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
+.++++.+.++..+...+. |...|+.+-..+.+. +.++++++.++++. ...|+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell--e~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ--ELEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH--HHCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH--hhCccc
Confidence 4578899999999987766 888888777777665 45788999999998 478998
Q ss_pred hhhHHHhhh
Q 006437 603 MWRKLGLLS 611 (645)
Q Consensus 603 ~w~~~~~L~ 611 (645)
.|...++..
T Consensus 272 ~w~l~~~~~ 280 (331)
T 3dss_A 272 KWCLLTIIL 280 (331)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 998766643
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.2e-05 Score=64.91 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
..+..+...+...|++++|...|++.++..+. +...+..+..+|.+.|++++|...+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555566677777888888888777776655 66777788888888888888888888887764 44577788888888
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 006437 508 LEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~ 525 (645)
...|++++|+..|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888888776
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=2.9e-06 Score=70.39 Aligned_cols=98 Identities=6% Similarity=-0.043 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLT 574 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 574 (645)
+...+..+...+.+.|++++|+..|++.... .| +...|..+..++...|++++|...++++.+.++. ++..+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 4566777888899999999999999999884 45 7888999999999999999999999999987765 678888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 006437 575 KFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 575 ~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
.+|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=6.1e-06 Score=73.19 Aligned_cols=60 Identities=12% Similarity=-0.129 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 222 MFEILLNCFCKMGRIAEAYQLLGLMITL----GTSL--SVNAWTVLIDGFRRLRRLDMAGYLWEKM 281 (645)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 281 (645)
++..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444455555555555555444322 1011 1223444444444455555555444444
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=1.7e-05 Score=62.86 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 45667888889999999999999999998742 337888999999999999999999999999987654 6888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 576 FIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 576 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
++...|++++|.+.+++..+ ..|+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~ 106 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNP 106 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCH
Confidence 99999999999999999985 455544
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00078 Score=63.65 Aligned_cols=180 Identities=10% Similarity=0.003 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCcHHHHH
Q 006437 390 ADLVVYNALLSYFCKAG--FPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK-IDEAINVYQGIVMNNPAVNAHVHT 466 (645)
Q Consensus 390 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 466 (645)
.+..+|+.-...+.+.+ .+++++.+++.+.+.. +-+...|+.-.-.+...|. .+++.+.++.+++..+. |...|+
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~ 183 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWH 183 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 35566666666666666 3788888998888864 2355566655555666677 58888888888888776 677776
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHH
Q 006437 467 AIVDRLIEA--------------GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG-----------GRTEEAYILYS 521 (645)
Q Consensus 467 ~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~ 521 (645)
.....+.+. +.++++++.+++.+... |-|...|+.+-..+.+. +.++++++.++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 665555554 45788888888888765 55788888776666655 35778888888
Q ss_pred HHhhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 522 QMKHIAVPPNA-YTYRVMLL---SFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 522 ~m~~~~~~p~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
++.+ +.||. ..+..++. +....|..+++..+++++++.++. ...-|..+..
T Consensus 263 elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~ 317 (331)
T 3dss_A 263 ELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRS 317 (331)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred HHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 8887 56753 22222221 122356677778888888774433 3444554443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.2e-05 Score=65.04 Aligned_cols=106 Identities=10% Similarity=0.048 Sum_probs=73.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----hhhHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEK--YPLD----VVSYTV 502 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 502 (645)
.+..+...+.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455666677777777777777777776655 56677777777888888888888777776542 0111 235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRV 537 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 537 (645)
+..++...|++++|++.|++..+ ..||+.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 77778888888888888888776 4577665443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=1e-05 Score=69.00 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML 539 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 539 (645)
+...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+ +.| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45567778888888888888888888888764 44677888888888888888888888888877 345 577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 540 LSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.+|...|++++|.+.++++++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 888888888888888888876543
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=8.5e-06 Score=65.22 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 006437 499 SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFI 577 (645)
Q Consensus 499 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (645)
.+..+...+.+.|++++|+..+++..+ ..| +...|..+..++...|++++|+..++++.+.++. +...+..+..+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344555666677777777777777666 334 5666666777777777777777777777765544 566666777777
Q ss_pred HhcCChhHHHHHHHHHH
Q 006437 578 FKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 578 ~~~g~~~~A~~~~~~m~ 594 (645)
.+.|++++|++.+++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777777766
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.24 E-value=1.1e-05 Score=65.38 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIA--VPPN----AYTYRV 537 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 537 (645)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. ..++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555556666666666666666665543 3345556666666666666666666666655421 0111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 538 MLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 538 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
+...+...|++++|.+.++++.+.. |+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 6666666666666666666666533 24444444433
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.7e-05 Score=64.68 Aligned_cols=95 Identities=17% Similarity=0.071 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIR 572 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 572 (645)
...+..+...+...|++++|+..|++..+ ..|+ ...+..+...|...|++++|...+++..+..+. +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 34444455555555555555555555544 2343 344445555555555555555555555543322 3445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 006437 573 LTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 573 l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+..++...|++++|.+.+++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555554
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=2.5e-05 Score=64.04 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML 539 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 539 (645)
+...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|+..+++..+. .| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 44555556666666666666666666665543 334555666666666666666666666666552 23 455555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006437 540 LSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 540 ~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665554
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=2.3e-05 Score=66.66 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF 576 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 576 (645)
..|..+...+.+.|++++|+..|++..+ +.| +...|..+..+|...|++++|...++++++..+. +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444444445555555555555555444 223 3444445555555555555555555555444332 34444555555
Q ss_pred HHhcCChhHHHHHHHHHH
Q 006437 577 IFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 577 ~~~~g~~~~A~~~~~~m~ 594 (645)
|.+.|++++|.+.+++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555544
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=1.9e-05 Score=61.77 Aligned_cols=100 Identities=8% Similarity=-0.027 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE-LDYHTSIRLT 574 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 574 (645)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45566667777777777777777777776632 235667777777777777777777777777765322 1466777777
Q ss_pred HHHHhc-CChhHHHHHHHHHHHC
Q 006437 575 KFIFKF-HSSSSAVNQLVEMCNL 596 (645)
Q Consensus 575 ~~~~~~-g~~~~A~~~~~~m~~~ 596 (645)
.++.+. |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777 8888888887777643
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=5.3e-05 Score=62.87 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTY 535 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~ 535 (645)
+...+..+...+...|++++|.+.|++..+.. |+ ...|..+..+|...|++++|+..+++..+. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 45556666677777777777777777776653 44 566777777777777777777777777663 34 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
..+..++...|++++|.+.+++..+..+. +...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 77777777778888888777777765433 4444444433
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=2.6e-05 Score=63.89 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTK 575 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 575 (645)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34444444555555555555555555544421 113444444555555555555555555555443332 3444445555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 006437 576 FIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 576 ~~~~~g~~~~A~~~~~~m~ 594 (645)
++...|++++|.+.+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555554443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.6e-05 Score=64.30 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=71.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKY--PLD----VVSYTV 502 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 502 (645)
.+..+...+...|+++.|...++......+. +...+..+..++...|++++|...++++..... +++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555666666666666666666665543 455666677777777777777777777665430 111 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLS 541 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 541 (645)
+..++...|++++|.+.++++.+ ..|+......+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 77788888888888888888777 44665555444433
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.7e-05 Score=62.17 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP--NAYTYRVMLLS 541 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~ 541 (645)
.+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555556666666666666655543 3345555666666666666666666666665532 12 35556666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHCC
Q 006437 542 FCKE-RNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 542 ~~~~-g~~~~a~~~~~~~~~~~ 562 (645)
+... |++++|.+.++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666665543
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=3.5e-05 Score=67.99 Aligned_cols=93 Identities=13% Similarity=-0.016 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLS 541 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 541 (645)
..+..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|++..+ +.| +...+..+...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHH
Confidence 566677778888888888888888887764 44677788888888888888888888888877 345 56666666666
Q ss_pred HHhcCCHHHHH-HHHHHH
Q 006437 542 FCKERNIKMVK-RLLQDV 558 (645)
Q Consensus 542 ~~~~g~~~~a~-~~~~~~ 558 (645)
+...++.+++. ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 66666555554 334443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=2e-05 Score=66.68 Aligned_cols=133 Identities=8% Similarity=-0.002 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CH
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYP-LD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NA 532 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 532 (645)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555666677777777777777666543100 11 236677777788888888888888876542 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 533 YTYRVMLLSFCKERNIKMVKRLLQDVIDA----RIE-LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 533 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.++..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777778888888888888888877642 111 1245677888888899999999998888763
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=2.2e-05 Score=62.75 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE 545 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 545 (645)
.+...+.+.|++++|...|+++++.. |.+...|..+..++...|++++|+..|++..+ +.| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34445555566666666666555543 33455555566666666666666666666555 334 445555555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 006437 546 RNIKMVKRLLQDVID 560 (645)
Q Consensus 546 g~~~~a~~~~~~~~~ 560 (645)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665554
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.0001 Score=74.18 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=138.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cH
Q 006437 400 SYFCKAGFPNQAVKLYNTMLDKGFTPDN----------------YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAV-NA 462 (645)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 462 (645)
..+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+....... +.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4467789999999999988875322111 236778888999999999999998876642221 11
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC
Q 006437 463 ----HVHTAIVDRLIEAGRCHKAIQLFRRAIVE----KYPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVP 529 (645)
Q Consensus 463 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~ 529 (645)
.+.+.+...+...|+++.|..+++..... +..+ -..++..+...|...|++++|..+++++... +-.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22333444555678899999988876542 2222 2557788899999999999999999887532 112
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-Cc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 530 P-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA--RI-EL---DYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 530 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
| ...++..++..|...|++++|..++++.... .. .| -...+..++..+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 2457888899999999999999999988642 11 11 135567777788889999999887777643
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=0.00017 Score=74.63 Aligned_cols=171 Identities=8% Similarity=0.010 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR----------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG 511 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 511 (645)
..++|.+.++.++..+++ +..+|+.-..++.+.|+ ++++++.++++.+.. +-+..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677777777777766 56666665555656555 888888898888775 457778888888888888
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 006437 512 --RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER-NIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF-------- 580 (645)
Q Consensus 512 --~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 580 (645)
+++++++.++++.+.. +-|...|+.-..++.+.| .++++.+.++++++.++. +...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999998843 237888888888888888 889999999988887766 788888887777663
Q ss_pred ------CChhHHHHHHHHHHHCCCCCChhhhHHHhhhcccCC
Q 006437 581 ------HSSSSAVNQLVEMCNLGLIPDEMWRKLGLLSDETMT 616 (645)
Q Consensus 581 ------g~~~~A~~~~~~m~~~g~~p~~~w~~~~~L~~~~~~ 616 (645)
+.+++|++.++++......-.+.|.+.+.|.+....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 456889999988885433333449999988854433
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=2.2e-05 Score=79.75 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=48.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006437 439 GARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYI 518 (645)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 518 (645)
+.|++++|.+.+++.++..+. +...+..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444444444333 34444444445555555555555555544442 2234444444555555555555555
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006437 519 LYSQMKHIAVPP-NAYTYRVMLLS--FCKERNIKMVKRLLQ 556 (645)
Q Consensus 519 ~~~~m~~~~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 556 (645)
.+++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554442 22 22223333222 444445555554444
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=1e-05 Score=82.21 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=97.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKER 546 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 546 (645)
+...+.+.|++++|.+.++++++.. +.+...|..+..+|.+.|++++|++.+++..+ +.| +...+..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 3445678899999999999999875 44688999999999999999999999999998 456 6889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 006437 547 NIKMVKRLLQDVIDARIELDYHTSIRLTKF--IFKFHSSSSAVNQLV 591 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 591 (645)
++++|.+.++++.+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999986544 44455556655 888899999999988
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=2.8e-05 Score=78.72 Aligned_cols=128 Identities=7% Similarity=0.016 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437 463 HVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD---------------VVSYTVAIRGLLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 527 (645)
..+..+...+.+.|++++|...|+++++.. +.+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 344555556666666666666666665532 112 467777788888888888888888887773
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 006437 528 VPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN-QLVEMC 594 (645)
Q Consensus 528 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 594 (645)
.| +...|..+..+|...|++++|...|+++++..+. +...+..+..++.+.|+.++|.+ ++++|.
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 5777778888888888888888888888776544 55677777777777777777653 455554
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=0.00015 Score=58.54 Aligned_cols=91 Identities=18% Similarity=0.074 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHH
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAIVEKYPLDV---VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN----AYTYRVMLL 540 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~ 540 (645)
+...+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++++.+. .|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHH
Confidence 3444555556666666665555432 1122 34555555555666666666666665542 232 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006437 541 SFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~~ 561 (645)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 556666666666666665553
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=4.2e-05 Score=74.80 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----------------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIV----------------EKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAV 528 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 528 (645)
+..+...+.+.|++++|.+.|+++++ .. +.+...|..+..+|.+.|++++|+..+++..+ +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 34455555566666666666655554 11 22467788888899999999999999999987 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 529 PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 529 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
.| +...+..+..+|...|++++|.+.++++.+..+. +...+..+..++.+.++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 6788888899999999999999999999886654 67788888888888887777654
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=5.9e-05 Score=60.91 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-A---YTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD--YHTSIRL 573 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 573 (645)
+..+...+...|++++|...|+++.+. .|+ . ..+..+..++...|++++|...++++.+..+... +..+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 445667888999999999999999873 453 3 5788889999999999999999999998655421 6778899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 574 TKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 574 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..++.+.|++++|.+.++++.+. .|+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 99999999999999999999865 45544
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=4.4e-05 Score=64.77 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVE--------K---------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHI 526 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 526 (645)
.+......+.+.|++++|...|++.+.. . .+.+...|..+..+|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555566666666666666665543 0 0123456777777888888888888888887773
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 527 AVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 527 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
.| +...|..+..+|...|++++|...+++..+..+.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 44 5677778888888888888888888888775543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=1.3e-05 Score=63.65 Aligned_cols=85 Identities=13% Similarity=0.023 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006437 475 AGRCHKAIQLFRRAIVEK--YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 551 (645)
.|++++|...|++.++.+ -+.+...|..+..+|...|++++|+..+++..+. .| +..++..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 345555555555555432 1223445555555666666666666666665552 33 355555555666666666666
Q ss_pred HHHHHHHHHC
Q 006437 552 KRLLQDVIDA 561 (645)
Q Consensus 552 ~~~~~~~~~~ 561 (645)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655543
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=8.6e-05 Score=61.21 Aligned_cols=60 Identities=3% Similarity=-0.048 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVIDA-------RIELDYHTS----IRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
.|..+..++.+.|++++|+..+++.++. ++. +...| .....++...|++++|++.|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555553 322 34455 566666666666666666666654
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=2.1e-05 Score=75.99 Aligned_cols=146 Identities=9% Similarity=-0.075 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006437 428 YSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGL 507 (645)
Q Consensus 428 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (645)
..+..+...+.+.|++++|...|++.+...+. .. .+...++.+++...+ ....|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD--DF-------MFQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH--HH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--ch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34445555556667777777777666554322 11 011222222222211 113678888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChhH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF-IFKFHSSSS 585 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 585 (645)
.+.|++++|+..+++..+ +.| +...|..+..+|...|++++|...|+++.+..+. +...+..|... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887 345 6778888888999999999999999888765443 45566666555 334566777
Q ss_pred HHHHHHHHHH
Q 006437 586 AVNQLVEMCN 595 (645)
Q Consensus 586 A~~~~~~m~~ 595 (645)
+.+.+++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7888888873
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=0.00015 Score=61.39 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY 533 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 533 (645)
+...+..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 45677888889999999999999999998875 55688899999999999999999999999888 567543
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00015 Score=73.23 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4567778888889999999999999888765 45688888888999999999999999999887 556 4567777778
Q ss_pred HHHhcCCHHHHHH-HHHHH
Q 006437 541 SFCKERNIKMVKR-LLQDV 558 (645)
Q Consensus 541 ~~~~~g~~~~a~~-~~~~~ 558 (645)
++.+.|+.+++.+ .++.|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887776653 34444
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00041 Score=69.72 Aligned_cols=156 Identities=7% Similarity=-0.054 Sum_probs=82.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHhHHHHHHHHHhcCCHhHHHHHHhhcCC-----CCh
Q 006437 127 RIYWRGEMYGMVLEAFDEMGRFGFTPN----------------TFARNIVMDVLFKIGRVDLGIKVLKETQL-----PNF 185 (645)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~ 185 (645)
+.+.+.|++++|++.|..+.+..-... ..++..|...|...|++++|.+.+..... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 334455666666666666554321110 01345666677777777777776665431 111
Q ss_pred ----hhHHHHHHHHHhcCCcchHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---
Q 006437 186 ----LSFNIALCNLCKLNDVSNVKDVIGMMVR----KGFYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITL--GT--- 251 (645)
Q Consensus 186 ----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~--- 251 (645)
...+.+-..+...|+.+.+.++++.... .+..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222333345666666666655532 222222 335566667777777777777777665532 11
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 252 SLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 252 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
.....++..++..|...|++++|..++++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1123456666666667777777766666554
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=1.9e-05 Score=62.72 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=72.5
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 006437 509 EGGRTEEAYILYSQMKHIAV-PP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSA 586 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 586 (645)
..|++++|+..|++..+.+. .| +...+..+..+|...|++++|.+.++++++..+. ++..+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35889999999999998431 24 4678889999999999999999999999987766 688999999999999999999
Q ss_pred HHHHHHHHHCC
Q 006437 587 VNQLVEMCNLG 597 (645)
Q Consensus 587 ~~~~~~m~~~g 597 (645)
++.+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998653
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=0.00012 Score=61.66 Aligned_cols=97 Identities=8% Similarity=-0.027 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEK----YPL-DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI----AVPP-NAY 533 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 533 (645)
++..+...+...|++++|.+.+++..+.. .++ ....+..+...+...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44556666666666666666666654321 000 1345666777777888888888887776532 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777888888888888888887764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00083 Score=69.50 Aligned_cols=174 Identities=9% Similarity=0.012 Sum_probs=139.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCC----------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006437 405 AGFPNQAVKLYNTMLDKGFTPD-NYSFVGLLRGLCGARK----------IDEAINVYQGIVMNNPAVNAHVHTAIVDRLI 473 (645)
Q Consensus 405 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (645)
....++|++.++++.... |+ ...|+.--.++...++ ++++.+.++.+.+..++ +..+|..-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344568899999998863 44 3444444444444555 89999999999999888 8888888888888
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc----
Q 006437 474 EAG--RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG-RTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKE---- 545 (645)
Q Consensus 474 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~---- 545 (645)
+.+ +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+. .| |...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccc
Confidence 889 7799999999999986 558899999998889999 899999999999884 45 788888887777663
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 006437 546 ----------RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSS 585 (645)
Q Consensus 546 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 585 (645)
+.++++.+.+++++...+. |...|..+...+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999987766 78889888888888887554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00018 Score=70.32 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVML 539 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 539 (645)
+...+..+..+|.+.|++++|.+.++++++.. +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45677888888999999999999999998764 44678888899999999999999999999887 456 566777777
Q ss_pred HHHHhcCCHHHHHH
Q 006437 540 LSFCKERNIKMVKR 553 (645)
Q Consensus 540 ~~~~~~g~~~~a~~ 553 (645)
..+...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666543
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00064 Score=55.55 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006437 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVK 552 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 552 (645)
++++|.+.|++..+.+ +.... |...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22222 4444444455555555555555532 44455555555554 45566666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006437 553 RLLQDVIDARIELDYHTSIRLTKFIFK----FHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 597 (645)
+++++..+.+ ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666555543 34555555555555 556666666666665554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00043 Score=57.06 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-------------VVSYTVAIRGLLEGGRTEEAYILYSQMKHI----- 526 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 526 (645)
+......+.+.|++++|...|++.++.. |+ ...|+.+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4455666677777777777777777653 22 228889999999999999999999998872
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 527 AVPPN-AYTY----RVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 527 ~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
.+.|+ ...| .....++...|++++|+..|++.++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11775 5577 88899999999999999999999864
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.0011 Score=54.14 Aligned_cols=110 Identities=11% Similarity=-0.037 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLE----GGRTEEAY 517 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 517 (645)
++++|.+.|++..+.+.. ... +...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555555554411 111 4444445555555666666655554 55555555555555 55666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006437 518 ILYSQMKHIAVPPNAYTYRVMLLSFCK----ERNIKMVKRLLQDVIDAR 562 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 562 (645)
.+|++..+.| +...+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 34555555555555 566666666666666554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=5.8e-05 Score=59.00 Aligned_cols=91 Identities=16% Similarity=0.079 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C----HHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL-D----YHTS 570 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~ 570 (645)
...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|.+.++++.+..+.. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 445555666666666666666666666552 33 45566666666666666666666666666543321 1 3344
Q ss_pred HHHHHHHHhcCChhHHHHH
Q 006437 571 IRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 571 ~~l~~~~~~~g~~~~A~~~ 589 (645)
..+..++...|+.++|++.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 4455555555555444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00012 Score=70.79 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006437 392 LVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDR 471 (645)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (645)
...+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445677778888999999999999998874 344331 223344444433221 2367788899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH-HhcCCHH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSF-CKERNIK 549 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~-~~~g~~~ 549 (645)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|+..|++..+ +.|+ ...+..+.... ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 45788999999999999999999999999987 5564 44555554442 3456677
Q ss_pred HHHHHHHHHHHCCC
Q 006437 550 MVKRLLQDVIDARI 563 (645)
Q Consensus 550 ~a~~~~~~~~~~~~ 563 (645)
.+..+++++....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888876443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.0002 Score=72.19 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHHH
Q 006437 472 LIEAGRCHKAIQLFRRAIVEK---YPL----DVVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----A-VPP-NAYTYRV 537 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~ 537 (645)
+...|++++|+.++++.++.. +.| ...+++.|...|...|++++|+.++++.++- | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776665431 112 2457788888888888888888888876531 2 122 2456888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 538 MLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 538 ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
|...|..+|++++|..+++++.+ .|.. | ...+.+.+..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999888887763 3433 1 23455667777888888999999998887643
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00069 Score=53.23 Aligned_cols=77 Identities=4% Similarity=0.000 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 481 AIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVI 559 (645)
Q Consensus 481 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 559 (645)
|.+.|++..+.. +.+...|..+...|...|++++|+..+++..+. .| +...+..+..++...|++++|...+++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555443 335566666666666666777777666666652 33 45566666666666777777777666665
Q ss_pred H
Q 006437 560 D 560 (645)
Q Consensus 560 ~ 560 (645)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00017 Score=59.30 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 006437 442 KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR----------CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG 511 (645)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 511 (645)
.+++|.+.++..++..+. +...|..+..++...++ +++|+..|++.++.. |.+...|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 344455555555544444 44444444444444433 345666666665553 224555666666665543
Q ss_pred -----------CHHHHHHHHHHHhhCCCCCCHHHHH
Q 006437 512 -----------RTEEAYILYSQMKHIAVPPNAYTYR 536 (645)
Q Consensus 512 -----------~~~~A~~~~~~m~~~~~~p~~~~~~ 536 (645)
++++|++.|++..+ +.|+...|.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 56666666666665 456544443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00044 Score=54.39 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006437 445 EAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMK 524 (645)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 524 (645)
.|...++...+..+. +...+..+...|...|++++|...|++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355666666666554 56677778888888888888888888877764 4456777888888888888888888888876
Q ss_pred h
Q 006437 525 H 525 (645)
Q Consensus 525 ~ 525 (645)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.51 E-value=0.00093 Score=49.58 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437 497 VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF 576 (645)
Q Consensus 497 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 576 (645)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555555556666666666666655421 124455555566666666666666666666554332 44455555544
Q ss_pred HHh
Q 006437 577 IFK 579 (645)
Q Consensus 577 ~~~ 579 (645)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00039 Score=54.09 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------HH
Q 006437 461 NAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPN-------AY 533 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 533 (645)
+...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..+++..+ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34556667777788888888888888877764 44677788888888888888888888888877 4554 44
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKR 553 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~ 553 (645)
.+..+..++...|+.+.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 55555555555555554443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=0.00024 Score=58.47 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT----------EEAYILYSQMKHIAVPP-NAYTYRVMLLS 541 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 541 (645)
.+.+.+++|.+.+++.++.. |.+...|..+..++...+++ ++|+..|++..+ +.| +..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 45667889999999988876 55788888888888877664 588889998888 566 56788888888
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHCCC
Q 006437 542 FCKER-----------NIKMVKRLLQDVIDARI 563 (645)
Q Consensus 542 ~~~~g-----------~~~~a~~~~~~~~~~~~ 563 (645)
|...| ++++|.+.|+++++.++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 88764 78888888888887543
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00088 Score=67.56 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-c
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRK-----G-FYPN-VRMFEILLNCFCKMGRIAEAYQLLGLMITL-----GTS-L 253 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 253 (645)
+++.+..+|...|++++|..++++.++. | -.|+ ..+++.|...|...|++++|+.++++..+. |.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4566666666666666666666554321 2 1232 346788888888888888888888776531 321 1
Q ss_pred -CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 254 -SVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 254 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
...+.+.+-.++...+.+++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455555666667777777777777654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.43 E-value=0.0014 Score=48.61 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 006437 462 AHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLL 540 (645)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 540 (645)
...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++..+ ..| +...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 4456667777777788888888887777654 34566777777788888888888888888776 334 4556666555
Q ss_pred HHHh
Q 006437 541 SFCK 544 (645)
Q Consensus 541 ~~~~ 544 (645)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0013 Score=49.98 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 496 DVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 496 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+...|..+...|.+.|++++|+..|++..+. .| +...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666666665552 23 344555556666666666666666655543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.0028 Score=48.20 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006437 531 NAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNL 596 (645)
Q Consensus 531 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 596 (645)
+...+..+...|...|++++|...++++++.++. +...|..+..+|.+.|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999987765 6778999999999999999999999998754
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.75 E-value=0.023 Score=53.89 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=23.0
Q ss_pred CCCHhhHHHHHHHHHc--C---CCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006437 424 TPDNYSFVGLLRGLCG--A---RKIDEAINVYQGIVMNNPAVNAHVHTAI 468 (645)
Q Consensus 424 ~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l 468 (645)
+.+...|...+++... . .+..+|..+|++.++..|. ....+..+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~l 239 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEK 239 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3455556665554332 1 2345677777777666554 33444433
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.011 Score=58.38 Aligned_cols=84 Identities=7% Similarity=-0.001 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHhh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHH
Q 006437 511 GRTEEAYILYSQMKH---IAVPPN----AYTYRVMLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKF 576 (645)
Q Consensus 511 g~~~~A~~~~~~m~~---~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~ 576 (645)
|++++|+.++++.++ .-+.|+ ..+++.|..+|..+|++++|..+++++++ .|.. | ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 556666666655432 112222 34566666666666777766666666652 2221 1 13456677777
Q ss_pred HHhcCChhHHHHHHHHHH
Q 006437 577 IFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 577 ~~~~g~~~~A~~~~~~m~ 594 (645)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777777654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.63 E-value=0.023 Score=53.92 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=96.0
Q ss_pred CCcHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh----cC-CHHHHHH---HHHHHh
Q 006437 459 AVNAHVHTAIVDRLI--EAG---RCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLE----GG-RTEEAYI---LYSQMK 524 (645)
Q Consensus 459 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~g-~~~~A~~---~~~~m~ 524 (645)
..+...|...+.+.. ..+ ...+|..+|+++++.. |+ ...|..+..+|.. .+ ....... .++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346667777665543 233 4688999999999875 54 5566655555531 11 1111111 222211
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 525 HIA-VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 525 ~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
... .+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 111 24578888888888888899999999999999976 6788888999999999999999999999885 466655
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.54 E-value=0.018 Score=42.76 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=31.6
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 495 LDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 495 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
.|+..+..+..++...++ .++|..++++..+ ..| +......+...+...|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445555544443332 4555555555554 233 3444444555555555555555555555543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.041 Score=60.18 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=36.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHH
Q 006437 230 FCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIA 309 (645)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (645)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|..+.+ |..+...|...++.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 34455666655554322 2445566666666666666666666655432 23334444444554444
Q ss_pred HHHHHHHHh
Q 006437 310 FSFLDMLES 318 (645)
Q Consensus 310 ~~~~~~~~~ 318 (645)
..+-+....
T Consensus 727 ~~~~~~a~~ 735 (814)
T 3mkq_A 727 VTLAKDAET 735 (814)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444333333
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.43 E-value=0.23 Score=38.73 Aligned_cols=139 Identities=9% Similarity=0.004 Sum_probs=72.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006437 404 KAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQ 483 (645)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 483 (645)
-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. ++ ...+|++.+...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD------------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cC------------cHhhhcHHHHHH
Confidence 3566666666666665532 4444555554444444444444444433221 11 112333333333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 484 LFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
-+-.+ .-+...++..+..+...|+-++-.+++..+... .+|++..+..+..||.+.|+..+|.+++.++-+.|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32221 124444555566666667767666666664332 356666666777777777777777777776666665
Q ss_pred C
Q 006437 564 E 564 (645)
Q Consensus 564 ~ 564 (645)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.38 E-value=0.0037 Score=47.25 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVV-SYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+.+.|++++|.+.|+++.+.. +.+.. .|..+..+|...|++++|+..|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333444444444444444332 12233 344444444444444444444444433
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.38 E-value=0.028 Score=55.70 Aligned_cols=61 Identities=5% Similarity=-0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-c-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID-----ARIE-L-DYHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
+++.+..+|...|++++|..+++++++ .|.. | ...+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455555555555555555555555542 1211 1 13445556666666666666666655543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.34 E-value=0.011 Score=58.56 Aligned_cols=86 Identities=10% Similarity=-0.038 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCCC-HHHHHHHHH
Q 006437 475 AGRCHKAIQLFRRAIVE---KYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKH-----IA-VPPN-AYTYRVMLL 540 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ll~ 540 (645)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.++ .| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777666542 11222 46788888888888999999888888653 12 1232 457888999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006437 541 SFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 541 ~~~~~g~~~~a~~~~~~~~~ 560 (645)
.|..+|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.33 E-value=0.00014 Score=70.07 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcC--CCChhhHHHHHHHHHh
Q 006437 120 QTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQ--LPNFLSFNIALCNLCK 197 (645)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~ 197 (645)
..|..+.++....+.+.+|++.|-+ .-|+..|..++.+..+.|.+++-...+.... ..++..-+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 3455555555555555554443321 1233344455555555555555555554333 2333444455555555
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006437 198 LNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGL 245 (645)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (645)
.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 555544433321 24444444555555555555555555543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.23 E-value=0.019 Score=56.95 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=66.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHH
Q 006437 470 DRLIEAGRCHKAIQLFRRAIVEK---YPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHI-----A-VPP-NAYTY 535 (645)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~ 535 (645)
..+.+.|++++|..++++.++.. +.|+ ..+++.+..+|...|++++|+.++++..+- | -.| ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34556678888888887776542 1222 457888888899999999999988886531 2 123 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 536 RVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 536 ~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
+.|...|..+|++++|..+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8899999999999999999998863
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.21 E-value=0.045 Score=40.95 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 503 AIRGLLEGGRTEEAYILYSQMKHIAVPP-NAY-TYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 503 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
....+.+.|++++|+..+++..+ ..| +.. .+..+..++...|++++|.+.++++.+.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 45567788999999999999887 345 567 8888899999999999999999999886654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.10 E-value=0.03 Score=41.55 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 531 NAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 531 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
|+..+..+..++...++ .++|..++++..+.++. ++.....+...+.+.|++++|++.|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444433332 45555555555554433 444555555555555555555555555553
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.04 E-value=0.035 Score=45.07 Aligned_cols=82 Identities=5% Similarity=0.020 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006437 478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGG---RTEEAYILYSQMKHIAVPP--NAYTYRVMLLSFCKERNIKMVK 552 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~ 552 (645)
+..+.+.|.+..+.+ +++..+.-.+..++++.+ +.++++.++++..+.+ .| +...+..+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 444555555555444 245555555556666655 4446666666655532 23 2444555555556666666666
Q ss_pred HHHHHHHHC
Q 006437 553 RLLQDVIDA 561 (645)
Q Consensus 553 ~~~~~~~~~ 561 (645)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666553
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.047 Score=44.27 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHH
Q 006437 513 TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER---NIKMVKRLLQDVIDAR-IELDYHTSIRLTKFIFKFHSSSSAVN 588 (645)
Q Consensus 513 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 588 (645)
...+.+-|.+..+.| .++..+...+.+++++.+ +.+++..+++.+.+.+ +.-....+-.|.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455666666666655 467788888888888877 6668888888887755 21135566677777888888888888
Q ss_pred HHHHHHHCCCCCChh
Q 006437 589 QLVEMCNLGLIPDEM 603 (645)
Q Consensus 589 ~~~~m~~~g~~p~~~ 603 (645)
.++.+.+ +.|+..
T Consensus 93 y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHH--HCTTCH
T ss_pred HHHHHHh--cCCCCH
Confidence 8888884 677665
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.097 Score=57.19 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHcCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006437 403 CKAGFPNQAVK-LYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKA 481 (645)
Q Consensus 403 ~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 481 (645)
...+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 45677777765 4421 1 1012235566666677777777665421 1 1113344567777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 482 IQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
.++.+.+ .+...|..+...+.+.|+++.|++.|.++.+
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 7765432 3567777788888888888888887777653
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.80 E-value=0.0023 Score=61.94 Aligned_cols=212 Identities=11% Similarity=0.059 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM 161 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (645)
|+..|..++.+..+ .|.+++.+..+...++..-.|. .=+.|+-+|++.+++.+-.+... .|+..-...+.
T Consensus 82 Dps~y~eVi~~A~~-~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 82 DPSSYMEVVQAANT-SGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp CCCSSSHHHHHTTT-SSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred ChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 44456666666666 6677776666665555433332 23355666666666544322211 35555555666
Q ss_pred HHHHhcCCHhHHHHHHhhcC------------------------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 006437 162 DVLFKIGRVDLGIKVLKETQ------------------------LPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFY 217 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 217 (645)
+-|...|.++.|.-+|..+. ..++.+|..+-.+|...+.+.-|.-.--.++-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 66666666666666665432 234456666666666666655543332222211
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC------CCh
Q 006437 218 PNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ-NGCS------PNV 290 (645)
Q Consensus 218 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~------~~~ 290 (645)
..-...++..|-..|.+++...+++.-.... ..-...|+-|.-.|++- ++++..+.++..-. -+++ -..
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1112234455556666666666666554321 23456677777777664 33333333222111 0111 134
Q ss_pred hchHHHHHHHHhcCChhHHH
Q 006437 291 VTYTSLIKGFMEAKMFSIAF 310 (645)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~ 310 (645)
..|..++-.|++..+++.|.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHH
Confidence 55667777777777777554
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.79 E-value=0.059 Score=48.92 Aligned_cols=84 Identities=7% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CChh
Q 006437 514 EEAYILYSQMKHIAVPPN---AYTYRVMLLSFCKE-----RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKF-HSSS 584 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 584 (645)
..|..++++..+ +.|+ ...|..+...|... |+.++|.+.|++.++.++.-+..++..+.+.+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344444444444 3343 33444444444442 55555555555555543322244444455555442 5555
Q ss_pred HHHHHHHHHHHCCCC
Q 006437 585 SAVNQLVEMCNLGLI 599 (645)
Q Consensus 585 ~A~~~~~~m~~~g~~ 599 (645)
+|.+.+++..+....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 555555555544333
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.43 Score=39.75 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=77.0
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006437 437 LCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEA 516 (645)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 516 (645)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+.. | |..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHHHH
Confidence 34567888887776654 266777888888888888888887777653 2 45555566667777666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 517 YILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 517 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
.++-+.....| -++.....+...|+++++.+++.+. |--|. -+-.....|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 66655555443 1334445556678888887777543 22111 111222345666666776655
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.74 Score=38.36 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=11.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLG 244 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~ 244 (645)
...|..|.+.....|+++-|++.|.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344444444444444444444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.14 E-value=0.11 Score=39.35 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006437 465 HTAIVDRLIEAGRCHKAIQLFRRAIVEK------YPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKH 525 (645)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 525 (645)
+-.|...+.+.|+++.|...|+.+.+.. -.+....+..+..++.+.|++++|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555555555444320 011233444555555555555555555555544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.08 E-value=0.2 Score=45.56 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhc-C
Q 006437 478 CHKAIQLFRRAIVEKYPLD---VVSYTVAIRGLLEG-----GRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKE-R 546 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~-g 546 (645)
...|...+++.++.. |+ -..|..+...|.+. |+.++|.+.|++.++ +.|+ ..++......++.. |
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 344555555555543 33 34566666666663 666777777776666 4552 55565666666653 6
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 006437 547 NIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 547 ~~~~a~~~~~~~~~~~~~ 564 (645)
+.+++.+.+++.++..+.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 677777777776666555
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.01 E-value=0.21 Score=39.97 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437 546 RNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 546 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
+|.++|.++|+.+++..-+. ...|......-.+.|+...|.+++.+....+.+|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 55666666666665432222 555555555566666666666666666644444433
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.98 E-value=0.98 Score=35.28 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=97.7
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006437 438 CGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAY 517 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 517 (645)
.-.|.+++..++..+..... +..-+|-++--....-+-+-..++++.+-+. -|.. ..|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34688888888888877654 3444555555455555555555555544322 2322 345555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006437 518 ILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLG 597 (645)
Q Consensus 518 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 597 (645)
..+-.+ ..++..++..++....+|+-+.-.+++..+.. +-.|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 555444 23556777788889999999999999988654 345689999999999999999999999999999998
Q ss_pred CC
Q 006437 598 LI 599 (645)
Q Consensus 598 ~~ 599 (645)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.97 E-value=0.39 Score=38.39 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHhhCC
Q 006437 461 NAHVHTAIVDRLIEAGRC------HKAIQLFRRAIVEKYPLDVV-SYTVAIRG------LLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~m~~~~ 527 (645)
|..+|-..+...-+.|+. ++..++|+++... +||+.. .|...+.. +...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555666 6777777777654 455421 22222211 224478999999999997653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 006437 528 VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKF 576 (645)
Q Consensus 528 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 576 (645)
-.- ...|.....--.++|+++.|.+++...+..+.+ +.......+.-
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 222 666666666668899999999999999998877 44455444443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.94 E-value=0.24 Score=37.46 Aligned_cols=66 Identities=3% Similarity=-0.074 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIA------VPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.-+-.|...+.+.|+++.|...++...+.- -.+...++..+..++.+.|+++.|...++++.+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 334455666666666666666666654320 112345566666666666666666666666665433
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.53 E-value=0.38 Score=37.44 Aligned_cols=86 Identities=5% Similarity=0.014 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006437 476 GRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEE---AYILYSQMKHIAVPP--NAYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 476 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 550 (645)
..+..+.+-|.+....| .++..+--.+..++++..+..+ ++.++++....+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555554444 2555665666666666665554 677777766543 23 33445556666777777777
Q ss_pred HHHHHHHHHHCCC
Q 006437 551 VKRLLQDVIDARI 563 (645)
Q Consensus 551 a~~~~~~~~~~~~ 563 (645)
|++.++.+++..+
T Consensus 93 A~~~~~~lL~~eP 105 (126)
T 1nzn_A 93 ALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 7777777776443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.84 E-value=0.28 Score=38.20 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHH
Q 006437 512 RTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM---VKRLLQDVIDAR-IELDYHTSIRLTKFIFKFHSSSSAV 587 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 587 (645)
....+.+-|.+....| .|+..+-..+.+++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455666666665555 4888888888999988887666 888888887764 2124556667778899999999999
Q ss_pred HHHHHHHHCCCCCChh
Q 006437 588 NQLVEMCNLGLIPDEM 603 (645)
Q Consensus 588 ~~~~~m~~~g~~p~~~ 603 (645)
+.++.+++ +.|+..
T Consensus 95 ~~~~~lL~--~eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQNN 108 (126)
T ss_dssp HHHHHHHH--HCTTCH
T ss_pred HHHHHHHH--hCCCCH
Confidence 99999995 677665
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.43 E-value=10 Score=40.98 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=83.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHhcCC
Q 006437 402 FCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLR--GLCGARKIDEAINVYQGIVMNNPAVNAHVHT--AIVDRLIEAGR 477 (645)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 477 (645)
++-.|+.+....++..+.+.. +......+.. ++...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 445667676777777666531 2233333333 3446788888888877776542 22222222 34445667788
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 006437 478 CHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNI-KMVKRLLQ 556 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~ 556 (645)
.....+++..+.+.. ..++.-.-.+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|+. .++...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 877777888877642 2233333333334445666666677776665543 34333333333334444443 56777777
Q ss_pred HHHH
Q 006437 557 DVID 560 (645)
Q Consensus 557 ~~~~ 560 (645)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7754
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.11 E-value=11 Score=40.62 Aligned_cols=204 Identities=10% Similarity=0.044 Sum_probs=111.8
Q ss_pred HhcCCcccHHHHHhcCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHH---HHHHHHHcCCCHHH
Q 006437 371 CLSGRFSLLPKLVCGLEVEADLVVYN--ALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFV---GLLRGLCGARKIDE 445 (645)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~ 445 (645)
.-.|+.+....++.......+..... .+.-++...|+.+.+..+++.+.... .|.. -|. .+.-+|+..|+...
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHH
Confidence 34455555555552211111222223 33334457799999999988887642 2222 232 23446778899988
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 006437 446 AINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRT-EEAYILYSQMK 524 (645)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 524 (645)
..+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+.---.+.-+....|+. .+|+.++..+.
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 888999887653 2233333334444555677777777777666544 44554444555555555554 67888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhc--C-------CHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcC
Q 006437 525 HIAVPPNAYTYRVMLLSFCKE--R-------NIKMVKRLLQDVIDA-RIELDYHTSIRLTKFIFKFH 581 (645)
Q Consensus 525 ~~~~~p~~~~~~~ll~~~~~~--g-------~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 581 (645)
. .+|..+-..-+.++... | ++...++.+...... ...++...-..+..+....|
T Consensus 657 ~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 657 K---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp T---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred c---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 4 45655544444444332 2 233333333333332 22344555566666666655
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.22 E-value=2.9 Score=32.70 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 529 PPNAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.|+..|-..+.+++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+. .+.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence 5666666666666665553 34566777766665533245555666667777777777777777777 4566655
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.69 E-value=2.7 Score=40.76 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
.++..+...|+++++...+..+.... |.+...|..+|.++.+.|+..+|++.|+++
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555544432 334445555555555555555555555443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.69 E-value=2.6 Score=44.46 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006437 542 FCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEM 593 (645)
Q Consensus 542 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 593 (645)
|...|+++.|+++-++....-+. +..+|..|..+|...|+++.|+-.+..|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556666666666666554333 5666666666666666666666666655
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.35 E-value=1.2 Score=43.40 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCcCHHHHHHH
Q 006437 500 YTVAIRGLLEGGRTEEAYILYSQMKHIAVPP-NAYTYRVMLLSFCKERNIKMVKRLLQDVI-----DARIELDYHTSIRL 573 (645)
Q Consensus 500 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 573 (645)
...++.++...|++++|+..+..+.. ..| +...+..++.++.+.|+..+|.+.|+.+. +.|++|.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788889999999999999887 445 88899999999999999999999999875 46999988776544
Q ss_pred HHHH
Q 006437 574 TKFI 577 (645)
Q Consensus 574 ~~~~ 577 (645)
-..+
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.92 E-value=5.4 Score=31.63 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 529 PPNAYTYRVMLLSFCKERN---IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 529 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
.|+..+-..+.+++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 4566665566666665543 345666666666544332344555566667777777777777777763 556554
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.79 E-value=2.3 Score=31.20 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 238 EAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555556666666666666666666666666665553
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.73 E-value=8.6 Score=43.50 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006437 464 VHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVML 539 (645)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 539 (645)
-|.-++..+.+.+.++.+.++-+.+++...+.+ ...|..+..++...|++++|...+-.+.... --...+..|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 456677788888888888888777765431212 1257888888889999999988888877643 3356677777
Q ss_pred HHHHhcCCHH------------HHHHHHHHHHH-C-CCCcCHHHHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 006437 540 LSFCKERNIK------------MVKRLLQDVID-A-RIELDYHTSIRLTKFIFKFHSSSSAVN-QLVEMCN 595 (645)
Q Consensus 540 ~~~~~~g~~~------------~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 595 (645)
...+..|..+ +..+++..--+ . .+...+..|..|...+...|++..|-+ +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 7666655444 34444433221 1 223234567888888888888887765 4666543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.67 E-value=2.2 Score=44.99 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 473 IEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 473 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
...|+++-|+++.++.+..- |-+..+|..|..+|...|+++.|+-.+..+
T Consensus 348 l~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455555555555555432 223455555555555555555555554443
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.91 E-value=27 Score=36.05 Aligned_cols=346 Identities=10% Similarity=0.021 Sum_probs=177.6
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 006437 73 CAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTP 152 (645)
Q Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 152 (645)
+...++.+.....-+.-+..+++ .+++......+.. .+.+...-.....+....|+..+|......+-..| ..
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~-~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELAR-REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHCCCChhHHHHHHHHHHHHHh-CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 33444432333444555666776 6777766654332 13355555556666777777766666666655444 33
Q ss_pred CHHhHHHHHHHHHhcC------------------CHhHHHHHHhhcCCCChh-hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 006437 153 NTFARNIVMDVLFKIG------------------RVDLGIKVLKETQLPNFL-SFNIALCNLCKLNDVSNVKDVIGMMVR 213 (645)
Q Consensus 153 ~~~~~~~ll~~~~~~g------------------~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~ 213 (645)
.+..+..++..+.+.| +...|..+...+. ++.. ....++... .+...+......
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~-~~~~~~a~~~~al~---~~p~~~~~~~~~--- 207 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP-ADYQTIASAIISLA---NNPNTVLTFART--- 207 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-GGGHHHHHHHHHHH---HCGGGHHHHHHH---
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC-HHHHHHHHHHHHHH---hChHhHHHHHhc---
Confidence 3445555555555444 3444444433332 2211 112222211 223333332221
Q ss_pred CCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006437 214 KGFYPNVR---MFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNA----WTVLIDGFRRLRRLDMAGYLWEKMVQNGC 286 (645)
Q Consensus 214 ~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 286 (645)
. .++.. .+...+.-+.+. +.+.|...+....+.. ..+... +..+.......+...++...+.......
T Consensus 208 ~--~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~- 282 (618)
T 1qsa_A 208 T--GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (618)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred c--CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-
Confidence 1 22222 222223333343 7799999998886543 223322 2233333344453456666666654432
Q ss_pred CCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006437 287 SPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSL 366 (645)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (645)
.+.....-.+....+.|+++.|...|+.|...... .....--+.+++...|+.++|..+|..+... .+|-.+
T Consensus 283 -~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~ 354 (618)
T 1qsa_A 283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPM 354 (618)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHH
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHH
Confidence 34433444555566789999999999998764222 2333445677888899999999999998752 234333
Q ss_pred HHHHHhcCCcccHHHHHhcCCC-CCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006437 367 LSTVCLSGRFSLLPKLVCGLEV-EADLVV---YNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARK 442 (645)
Q Consensus 367 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 442 (645)
+.+ .+.|..-.. .. ..... ...... --..+..+...|....|...|..+.+. . +......+.......|.
T Consensus 355 lAa-~~Lg~~~~~-~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 355 VAA-QRIGEEYEL-KI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQW 428 (618)
T ss_dssp HHH-HHTTCCCCC-CC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTC
T ss_pred HHH-HHcCCCCCC-CC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCC
Confidence 322 223321100 00 00000 001111 112345577889999999988887764 2 33333344444556777
Q ss_pred HHHHHHHHH
Q 006437 443 IDEAINVYQ 451 (645)
Q Consensus 443 ~~~a~~~~~ 451 (645)
.+.+.....
T Consensus 429 ~~~~v~~~~ 437 (618)
T 1qsa_A 429 WDLSVQATI 437 (618)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 776665443
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.87 E-value=5.5 Score=29.23 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHhHHHHHHH
Q 006437 99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG-RFGFTPNTFARNIVMDV 163 (645)
Q Consensus 99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~ 163 (645)
+.-++.+-+..+-...+.|++....+.+++|.+.+++..|+++++-+. +.| ....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 455666667777777778888888888888888888888888888776 333 234456666643
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.12 E-value=24 Score=34.71 Aligned_cols=95 Identities=9% Similarity=0.023 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcC--HHh
Q 006437 189 NIALCNLCKLNDVSNVKDVIGMMVRK--GFYPN---VRMFEILLNCFCKMGRIAEAYQLLGLMIT----LGTSLS--VNA 257 (645)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 257 (645)
..|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666677778888888888777432 21111 23566677788888888888888877642 122222 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
|..++..+...+++.+|.+.|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66667777778888887777766653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.98 E-value=25 Score=34.66 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEKYPLD-----VVSYTVAIRGLLEGGRTEEAYILYSQM 523 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 523 (645)
.|...|...|++.+|..++..+...-...+ +..+..-++.|...+++.+|..++.++
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554432210111 223334444444555555555555443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.16 E-value=9.6 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 534 TYRVMLLSFCKERNIKMVKRLLQDVID 560 (645)
Q Consensus 534 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 560 (645)
.+-.|.-++.+.|++++|+++.+.+.+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444444444444444444444
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.24 E-value=14 Score=29.30 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=46.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 494 PLDVVSYTVAIRGLLEGGR---TEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 494 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.|+..+--.+..++++..+ ..+++.+++++...+-.-....+..|.-++.+.|++++|+++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3555555566667776654 446777787777633111345566677788888888888888888887544
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.17 E-value=34 Score=38.61 Aligned_cols=52 Identities=6% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 006437 159 IVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMM 211 (645)
Q Consensus 159 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 211 (645)
.++..+.+.+..+.|.++..-. +.+....-.+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4555666667776666654333 334444344555666777777777777654
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.82 E-value=13 Score=31.59 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437 510 GGRTEEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 565 (645)
.++..++..+|..|...|+--. +.-|......+...|++++|.++++.-++.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677777777777766553 5556666777777778888887777777776665
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.07 E-value=12 Score=27.22 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437 133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV 212 (645)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 212 (645)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+....||...|-++-.. +.|--+++...+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355777777777776542 222222333456678999999999998888888888777653 6677777777777776
Q ss_pred HCC
Q 006437 213 RKG 215 (645)
Q Consensus 213 ~~~ 215 (645)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 665
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.93 E-value=8 Score=30.13 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 239 AYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555543
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.64 E-value=13 Score=27.14 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 006437 133 EMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMV 212 (645)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 212 (645)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+....||...|-++-.. +.|--+++...+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355777777777776542 222222333456678999999999988888888888777653 5677777777776666
Q ss_pred HCC
Q 006437 213 RKG 215 (645)
Q Consensus 213 ~~~ 215 (645)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 655
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.35 E-value=34 Score=31.62 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=73.2
Q ss_pred HHHcCChHHHHH----HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHH
Q 006437 402 FCKAGFPNQAVK----LYNTMLDKGFTPDNYSFVGLLRGLCGARKID-EAINVYQGIV----MNN--PAVNAHVHTAIVD 470 (645)
Q Consensus 402 ~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~ 470 (645)
+.+.|+...|-+ +++-..+.+++++......++..+..-..-+ .=.++++.++ +.+ ..-++..+..+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 445566554444 3444455677777777777776665422111 1122223222 222 2347788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEG---GRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN 547 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 547 (645)
.|.+.|++.+|...|-. +-.-+...+..++.-+... |...++--. .... +--|...|+
T Consensus 143 ~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~Ra-VL~yL~l~n 203 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRL-VFNYLFISN 203 (312)
T ss_dssp HHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHH-HHHHHHTTB
T ss_pred HHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHH-HHHHHHhcC
Confidence 99999999998876641 1001344444444333332 333322111 1111 122345678
Q ss_pred HHHHHHHHHHHH
Q 006437 548 IKMVKRLLQDVI 559 (645)
Q Consensus 548 ~~~a~~~~~~~~ 559 (645)
...|..+++...
T Consensus 204 ~~~A~~~~~~f~ 215 (312)
T 2wpv_A 204 ISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877664
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.56 E-value=14 Score=28.78 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006437 99 RFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDV 163 (645)
Q Consensus 99 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (645)
+.-+..+-+..+....+.|++....+.+++|.+.+|+..|+++|+-++.. ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44566666777777778889999999999998889999999988887732 12334566666643
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.47 E-value=14 Score=33.33 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=4.2
Q ss_pred HHhcCCHHHH
Q 006437 472 LIEAGRCHKA 481 (645)
Q Consensus 472 ~~~~g~~~~a 481 (645)
.++.|+.+-+
T Consensus 226 A~~~~~~~~v 235 (285)
T 1wdy_A 226 AVEKKHLGLV 235 (285)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 3344444433
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.90 E-value=5.1 Score=32.77 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHH
Q 006437 467 AIVDRLIEAGRCHKAIQLFRRAIVEK-YPLDV-------VSYTVAIRGLLEGGRTEEAYILYSQMKHIA-VPP-NAYTYR 536 (645)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~ 536 (645)
.-+..+...|.++.|+-+.+.+.... ..|++ .++..+.+++...|++.+|...|++.+... .-+ +..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34556666777777777666644321 12231 245556666777777777777777753211 111 111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006437 537 VMLLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQLVEMCN 595 (645)
Q Consensus 537 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 595 (645)
.+.. ...... ......+.+.--.+..+|.+.|++++|+.+++.+..
T Consensus 105 ~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0100 000000 001122344545577888888888888888877643
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.59 E-value=22 Score=29.05 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHhhcC
Q 006437 156 ARNIVMDVLFKIGRVDLGIKVLKETQ 181 (645)
Q Consensus 156 ~~~~ll~~~~~~g~~~~A~~~~~~~~ 181 (645)
.--.+..+|.+.+++++|+.+++.++
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345555666666666666666655
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.47 E-value=17 Score=26.60 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 512 RTEEAYILYSQMKHIAVPPNAYTYRVM--LLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
..++|..+.+-+...+ + .....+ +..+...|++++|..+.+.. ..||...|-.| +-.+.|-.+++...
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 5566666666665533 2 222222 23345667777766655433 35566666554 33455666666666
Q ss_pred HHHHHHCC
Q 006437 590 LVEMCNLG 597 (645)
Q Consensus 590 ~~~m~~~g 597 (645)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 65655443
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.93 E-value=67 Score=33.11 Aligned_cols=188 Identities=7% Similarity=-0.122 Sum_probs=96.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006437 398 LLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGR 477 (645)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 477 (645)
.+....+.|+++.|...|+.|..... ....-.--+..++...|+.++|..+|..+... .+ .|..+. ..+.|.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~ 362 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGE 362 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCC
Confidence 33444567999999999988865321 23344556667778889999999999988642 12 233221 112221
Q ss_pred HHHHHHHHHHHHHCCCCCC-hh-----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006437 478 CHKAIQLFRRAIVEKYPLD-VV-----SYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMV 551 (645)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 551 (645)
.-.. .....++. .. .--.-+..+...|....|...|..+.+. .+......+.......|..+.+
T Consensus 363 ~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 363 EYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp CCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHH
Confidence 0000 00000010 00 0112344567889999999888887753 2333344444555667777776
Q ss_pred HHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 552 KRLLQDVIDARIE--LDYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 552 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
..........+.. .-+..|..++..+.+.-.++.++-.---..++++.|..+
T Consensus 433 v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 433 VQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 6544332211100 001124455555555555554433322233445555433
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.80 E-value=16 Score=32.91 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=10.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 006437 337 KMGSYDDALDVYDGLLELKLVPD 359 (645)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~ 359 (645)
..++.....++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34443334445555555554443
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.09 E-value=36 Score=29.02 Aligned_cols=142 Identities=8% Similarity=-0.044 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHH
Q 006437 81 HDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIV 160 (645)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (645)
++...-...+..+.+ .+..+ +...+..+.. .++...-...+.+++..++.+ +...+..+.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~-~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGK-IGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHH-HCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-hCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 355555555666666 34432 3333333333 245555555666666666533 3333333332 3555666666
Q ss_pred HHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 161 MDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
+.++.+.++.+....+.+.+..++...-...+.++...|+.+ +...+..+.+ .++...-...+.++...+.
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666666666544444444444555555555555555555433 3333333332 2444555555555555554
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.96 E-value=46 Score=29.74 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=75.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCC
Q 006437 472 LIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAY----TYRVMLLSFCKERN 547 (645)
Q Consensus 472 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~ 547 (645)
..+.|++++|++....-++.. |-|...=..++..+|-.|++++|.+=++...+ +.|+.. +|..+|.+-
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH-----
Confidence 345566666666666655554 44566666666666667777777666666655 344322 233333221
Q ss_pred HHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCChhhhHHHhhhcccCCccc
Q 006437 548 IKMVKRLLQDVIDARIE-----LDYHTSIRLTKFIF--KFHSSSSAVNQLVEMCNLG-LIPDEMWRKLGLLSDETMTPVS 619 (645)
Q Consensus 548 ~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~~w~~~~~L~~~~~~~~~ 619 (645)
..-.++..-+-. ....-...|+.++. ..|+.++|.++-.++.+.- ..|... + ..
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~-------~------~~ 140 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA-------N------DT 140 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE-------T------TE
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc-------C------CC
Confidence 111122211111 13444555555544 4688888888888876431 122111 1 13
Q ss_pred cccccccccccCCCcchhh-ccCC
Q 006437 620 LFDGFVPCERRAGNANHLL-LNGG 642 (645)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~-~~~~ 642 (645)
-|+.+.....+.++.=.++ .+++
T Consensus 141 ~F~wi~D~D~RlGpv~E~i~~~G~ 164 (273)
T 1zbp_A 141 SFSDVRDIDDRLGGYIELFSTAGN 164 (273)
T ss_dssp EESCEEESSTTTTTEEEEECTTSC
T ss_pred CcchhhccccCCcceEEEEEeCCe
Confidence 3666666666666655555 5444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.65 E-value=17 Score=26.60 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 006437 512 RTEEAYILYSQMKHIAVPPNAYTYRVM--LLSFCKERNIKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAVNQ 589 (645)
Q Consensus 512 ~~~~A~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 589 (645)
..++|..+.+-+...+ + .....+ +..+...|++++|..+.+.. ..||...|-.| +-.+.|-.+++...
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 4566666665555433 2 222222 23345566666666554432 34555555444 33455666665555
Q ss_pred HHHHHHCC
Q 006437 590 LVEMCNLG 597 (645)
Q Consensus 590 ~~~m~~~g 597 (645)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 55555443
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.17 E-value=28 Score=28.00 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 006437 551 VKRLLQDVIDARIEL-DYHTSIRLTKFIFKFHSSSSAVNQLVEMCNLGLIPDEM 603 (645)
Q Consensus 551 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 603 (645)
+.++|..|...++-- -+..|......+...|++.+|.++++.-.+.+.+|-..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 555666665544432 34555666666666666666666666666666666444
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.72 E-value=58 Score=30.31 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=72.0
Q ss_pred HHHcCChHHHHHHH----HHHHHCCCCCCHhhHHHHHHHHHcCCCHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHH
Q 006437 402 FCKAGFPNQAVKLY----NTMLDKGFTPDNYSFVGLLRGLCGARKID-EAINVYQGIV----MNN--PAVNAHVHTAIVD 470 (645)
Q Consensus 402 ~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~ 470 (645)
+.+.|+...|.++- +-+.+.++++|......++..+.....-+ .=..+.+.++ +.+ ..-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 34445554443333 44445667777777666666665443211 1122222222 222 3447788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006437 471 RLIEAGRCHKAIQLFRRAIVEKYPLDVVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKM 550 (645)
Q Consensus 471 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 550 (645)
.|.+.+++.+|...|- .|-.+.+..|..++.-+...+...++ +......++ -|...++...
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHH
Confidence 9999999999988772 23223335565544444333321111 112222222 3345567777
Q ss_pred HHHHHHHHH
Q 006437 551 VKRLLQDVI 559 (645)
Q Consensus 551 a~~~~~~~~ 559 (645)
|...++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.83 E-value=40 Score=27.56 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 006437 516 AYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELD 566 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 566 (645)
+..+|..|...|+--. +..|......+...|++.+|.++++.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666555443 44455555555666666666666666666555553
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.62 E-value=25 Score=34.51 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 429 SFVGLLRGLCGARKIDEAINVYQGIVMN--NPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 429 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
+...+...+.+.|+++.|.+.+.++... +...-...+-.++..+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555556666666666666665543 222233444555555555566666655555543
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.35 E-value=52 Score=27.95 Aligned_cols=153 Identities=10% Similarity=-0.045 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHH
Q 006437 117 IKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLC 196 (645)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 196 (645)
++...-...+..+.+.+..+ +...+..+.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666666533 3333333433 3566666666777777776555555555555666666666666666
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGY 276 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 276 (645)
+.++.+. ...+..+.+ .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+. .++..
T Consensus 107 ~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 107 QIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHH
Confidence 6666433 333333433 345555555666666665533 2333333332 3344555555555555554 23333
Q ss_pred HHHHHH
Q 006437 277 LWEKMV 282 (645)
Q Consensus 277 ~~~~m~ 282 (645)
.+..+.
T Consensus 178 ~L~~~l 183 (211)
T 3ltm_A 178 AMEKLA 183 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.60 E-value=46 Score=32.52 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCcCHHh--HH
Q 006437 187 SFNIALCNLCKLNDVSNVKDVIGMMVRKG--FYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITL---GTSLSVNA--WT 259 (645)
Q Consensus 187 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 259 (645)
+...+...|.+.|++++|.+.+.++...- ...-...+..+++.+...+++..+...+..+... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777778888888888888776542 2223456777778888888888888887776532 22222111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 260 VLIDGFRRLRRLDMAGYLWEKMVQ 283 (645)
Q Consensus 260 ~li~~~~~~~~~~~a~~~~~~m~~ 283 (645)
.-...+...+++..|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123345667776666665543
No 275
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=68.52 E-value=75 Score=29.47 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=8.3
Q ss_pred HHHHHhcCChHHHHHHH
Q 006437 126 LRIYWRGEMYGMVLEAF 142 (645)
Q Consensus 126 i~~~~~~~~~~~a~~~~ 142 (645)
+...++.|+++.+..++
T Consensus 29 L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444566655444443
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.96 E-value=27 Score=30.46 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006437 228 NCFCKMGRIAEAYQLLGLMITLG 250 (645)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~ 250 (645)
...+..|+.+.+..+++.+.+.|
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444555555555555444443
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=65.44 E-value=42 Score=29.05 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=9.7
Q ss_pred HHHHHhcCCHhHHHHHHhhc
Q 006437 161 MDVLFKIGRVDLGIKVLKET 180 (645)
Q Consensus 161 l~~~~~~g~~~~A~~~~~~~ 180 (645)
+...+..|+.+-+.-+++..
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444555555555555443
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=65.39 E-value=30 Score=30.09 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=4.2
Q ss_pred HHHhcCCHH
Q 006437 334 CLSKMGSYD 342 (645)
Q Consensus 334 ~~~~~~~~~ 342 (645)
..+..|+.+
T Consensus 115 ~A~~~~~~~ 123 (240)
T 3eu9_A 115 LAAQFGHTS 123 (240)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcCHHH
Confidence 344445544
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.97 E-value=90 Score=29.06 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=78.7
Q ss_pred HHHHhhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHh----hCC--CCCCHHhHHH
Q 006437 91 SVVTRLTGRFETVRGIV----GELARVGCVIKAQTFLLFLRIYWRGEMYG-MVLEAFDEMG----RFG--FTPNTFARNI 159 (645)
Q Consensus 91 ~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ 159 (645)
..+.+ .|+...+.++- +-+.+.+.+++......++..+.....-+ .=..+.+.++ +.| -.-|+.....
T Consensus 63 ~~ll~-~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 141 (336)
T 3lpz_A 63 QTLLR-SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHV 141 (336)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHH
T ss_pred HHHHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 34455 56666555544 55566778888888888887776554311 1122233332 222 2336777788
Q ss_pred HHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 006437 160 VMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGRIAEA 239 (645)
Q Consensus 160 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 239 (645)
+...|.+.+++.+|..-|=....+....|..++-.+...+...+ ++...-..++ -|...+++..|
T Consensus 142 ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A 206 (336)
T 3lpz_A 142 VGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAA 206 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHH
Confidence 88889999998888887743223333455444444333332111 1222222233 34456678888
Q ss_pred HHHHHHHHH
Q 006437 240 YQLLGLMIT 248 (645)
Q Consensus 240 ~~~~~~~~~ 248 (645)
..+++...+
T Consensus 207 ~~~~~~f~~ 215 (336)
T 3lpz_A 207 NTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 280
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=63.07 E-value=69 Score=29.75 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 006437 508 LEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDARIELDY 567 (645)
Q Consensus 508 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 567 (645)
++.|+.+- .+.+.+.|..+|..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 281 ~~~g~~~i----v~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKKI----AELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHHH----HHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHHH----HHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 34455443 333445555555433 223334455544 34455566655553
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.11 E-value=88 Score=27.98 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=80.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhc
Q 006437 435 RGLCGARKIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAGRCHKAIQLFRRAIVEKYPLD----VVSYTVAIRGLLEG 510 (645)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 510 (645)
....+.|+++++++....-++..|. |...-..++..+|-.|++++|.+-++...+.. |+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 3456789999999999999998887 88888999999999999999999999887764 44 2344444433
Q ss_pred CCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 006437 511 GRTEEAYILYSQMKHIAVPP-----NAYTYRVMLLSF--CKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~ 561 (645)
+..=.++..-+-.| ...-...++.+. ...|+.+.|.++-.++.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333333233 233445556655 4569999999998888754
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.36 E-value=56 Score=27.34 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=8.1
Q ss_pred HhcCCHhHHHHHHhh
Q 006437 165 FKIGRVDLGIKVLKE 179 (645)
Q Consensus 165 ~~~g~~~~A~~~~~~ 179 (645)
+..|+.+....+++.
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445555555555554
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.58 E-value=72 Score=28.83 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 006437 260 VLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVF 327 (645)
Q Consensus 260 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (645)
+.+...+..|+.+-+.-+++.-..-.. .+...++..+...+..|+. ++.+.+.+.|..++...
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 334444556666555444443222111 1222222223333444443 34444455565555443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.99 E-value=47 Score=26.72 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHH
Q 006437 138 VLEAFDEMGRFGFTPN-TFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIAL 192 (645)
Q Consensus 138 a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 192 (645)
+.++|..|...|+-.. ...|-.....+...|++.+|.++|+.....+......|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 5555555555544332 344455555555555555555555554433333333333
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.88 E-value=1.4e+02 Score=28.63 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 225 ILLNCFCKMGRIAEAYQLLGLMITLGTSL-----SVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
.++..|...|++.+|.+++..+.+.--.. -..+|..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45666777777777777766665431111 12345555566666777777776666654
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.63 E-value=79 Score=28.53 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=57.1
Q ss_pred HHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHH
Q 006437 162 DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRM--FEILLNCFCKMGRIAEA 239 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 239 (645)
...+..|+.+-+..+++....++...-...+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v 111 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV 111 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 33444555555555555432211111112223333445543 3333334454433211 11233344455665544
Q ss_pred HHHHHHHHHcCCCcCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhchHHHHHHHHhcCChhHHHHHHHH
Q 006437 240 YQLLGLMITLGTSLSVN---AWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSP-NVVTYTSLIKGFMEAKMFSIAFSFLDM 315 (645)
Q Consensus 240 ~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (645)
..+++ .|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 112 ~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 112 KLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44433 23333322 112334444555555433 3333333222 111223334444556666655555544
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.97 E-value=1.3e+02 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=15.3
Q ss_pred CHhhHHHHHHHHHhcCCcccHHHHH
Q 006437 359 DSYTFCSLLSTVCLSGRFSLLPKLV 383 (645)
Q Consensus 359 ~~~~~~~ll~~~~~~~~~~~a~~~~ 383 (645)
++.....+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4555556666666666666666655
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.01 E-value=97 Score=26.25 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006437 475 AGRCHKAIQLFRRAIVEKYPLD-VVSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPP 530 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 530 (645)
++...++..+|..|...|+.-. ...|......+...|++++|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4457788888888887765443 4556777777778888888888888888777677
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.60 E-value=80 Score=27.26 Aligned_cols=19 Identities=5% Similarity=-0.239 Sum_probs=8.2
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 006437 130 WRGEMYGMVLEAFDEMGRF 148 (645)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (645)
+..|+.+.+..+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3444444444444433333
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.60 E-value=92 Score=25.89 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=10.3
Q ss_pred hcCCcchHHHHHHHHHHCCCCCC
Q 006437 197 KLNDVSNVKDVIGMMVRKGFYPN 219 (645)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~ 219 (645)
..|+.+.-.++.+.+++.|..++
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCC
Confidence 33443333444454555554443
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.10 E-value=1.2e+02 Score=30.25 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHhhcCCCCh-hh------HH-HHHHHHHhcCCcchHHHHHHHHHH
Q 006437 154 TFARNIVMDVLFKIGRVDLGIKVLKETQLPNF-LS------FN-IALCNLCKLNDVSNVKDVIGMMVR 213 (645)
Q Consensus 154 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~-~ll~~~~~~g~~~~a~~~~~~m~~ 213 (645)
...+|.+++.|...+.++.|..+..+..-|.. .+ |. .+...+.-.+++.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555566666666666666666655543321 11 11 122333445556666555555544
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.82 E-value=1e+02 Score=25.68 Aligned_cols=141 Identities=9% Similarity=-0.034 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVM 161 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (645)
+...-...+..+.+ .+..... ..+.++.. .++...-...+.+++..++.+. ...+..+.. .++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~-~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGK-IGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHH-HCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-cCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 44444444455555 3432222 22222222 2455555555566665555432 333333332 35666666666
Q ss_pred HHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 162 DVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...|.
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 66666666544444444444555555555555555555432 3333333333 2345555555555555554
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.51 E-value=1.2e+02 Score=29.37 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 006437 584 SSAVNQLVEMC 594 (645)
Q Consensus 584 ~~A~~~~~~m~ 594 (645)
.+..++++...
T Consensus 390 ~~~~~~l~~~~ 400 (437)
T 1n11_A 390 ISVTDVLKVVT 400 (437)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 34455555543
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.43 E-value=1.1e+02 Score=25.64 Aligned_cols=123 Identities=12% Similarity=0.012 Sum_probs=63.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006437 151 TPNTFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCF 230 (645)
Q Consensus 151 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 230 (645)
.++..+-...+.++...|+.+....+.+.+..++...-...+.++.+.++.+. ...+..+.. .++...-...+.++
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34555556666666666665555555555556666666666666666666433 333333333 34555555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 231 CKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
...++.+ +...+..+.+ .++..+-...+.++.+.|+. ++...+..+.
T Consensus 132 ~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 132 GEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred HHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 6665533 2233333322 23555555555555555543 3333344333
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.81 E-value=52 Score=28.42 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 006437 514 EEAYILYSQMKHIAVPPN-AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIEL 565 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 565 (645)
+++..+|..|...|+--. +.-|......+...|++++|.++|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345555666655554442 3444555555555566666666666555555444
No 296
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.39 E-value=1.3e+02 Score=28.06 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 006437 395 YNALLSYFC 403 (645)
Q Consensus 395 ~~~li~~~~ 403 (645)
|..++..|+
T Consensus 275 ~~pll~~~~ 283 (339)
T 1ug3_A 275 RAKLLQKYL 283 (339)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 455555555
No 297
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.97 E-value=97 Score=28.53 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006437 511 GRTEEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDARIE 564 (645)
Q Consensus 511 g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 564 (645)
.+..+..++.--+-...+.|. .-++..-+..+.+.+++..|..+-+++++.+..
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 345666666666666666664 335666677777888888888888888776653
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.04 E-value=1.3e+02 Score=28.36 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhc
Q 006437 224 EILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEA 303 (645)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (645)
..++.-|...++.++|...++++......+.......-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 304 KM--------FSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGR 375 (645)
Q Consensus 304 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 375 (645)
.+ ++..-.++.++...++-|-.......... .-+.+.++++.... +--.......+-+.+.-.|.
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~--~L~~~~~~~~~~~~WG~g~~ 209 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATV--LLSMSKGGKRKDSVWGSGGG 209 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHH--HHTC---------CCCCCCS
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHH--HHhccchHHHHHHhcCCCCC
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC--CHHHHHHHHHHH
Q 006437 376 FSLLPKLVCGLEVEADLVVYNALLSYFCKAGFPNQAVKLYNTMLDKGFTPDNYSFVGLLRGLCGAR--KIDEAINVYQGI 453 (645)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~ 453 (645)
.....++-+. .+.++.-|...|+.++|.+.++++......+..+ ...+..++-+.+ ..+...+++..+
T Consensus 210 ~~~veelkkk---------i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V-~~av~~aLE~~~~~~re~~~~LL~~L 279 (358)
T 3eiq_C 210 QQPVNHLVKE---------IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV-YEAIVMVLESTGESAFKMILDLLKSL 279 (358)
T ss_dssp SSCHHHHHHH---------HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CccHHHHHHH---------HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHH-HHHHHHHHccCchHHHHHHHHHHHHH
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006437 454 VMNNPAVNAHVHTAIVDRLIEAGRCH 479 (645)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (645)
...++-........+...+....++.
T Consensus 280 ~~~glls~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 280 WKSSTITIDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHhccHhh
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.44 E-value=35 Score=30.29 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=26.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVIKAQT-------FLLFLRIYW--RGEMYGMVLEAFDEM 145 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~ 145 (645)
.|+.+....+++.+...|..++... ...|..+.. +.|+.+-+..+++.-
T Consensus 15 ~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 15 RGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4777777777776666665444322 222322221 446666555555543
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.35 E-value=1.4e+02 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006437 468 IVDRLIEAGRCHKAIQLFRRAI 489 (645)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~~~ 489 (645)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666677777776666554
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.00 E-value=28 Score=30.93 Aligned_cols=27 Identities=0% Similarity=-0.402 Sum_probs=16.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC
Q 006437 127 RIYWRGEMYGMVLEAFDEMGRFGFTPN 153 (645)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (645)
...++.|+.+....+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344566777777777776665555444
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.05 E-value=96 Score=26.78 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHhhcCCCChhhHHHHHHHH
Q 006437 136 GMVLEAFDEMGRFGFTPN-TFARNIVMDVLFKIGRVDLGIKVLKETQLPNFLSFNIALCNL 195 (645)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 195 (645)
+.+.++|..|...|+-.. ...|-.....+...|++.+|.++|+............|...+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 467788888887776544 556777788888888888888888877655544555555443
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.26 E-value=1.7e+02 Score=24.19 Aligned_cols=131 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH---hHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhc---hHHHH
Q 006437 225 ILLNCFCKMGRIAEAYQLLGLMITLGTSLSVN---AWTVLIDGFRR-LRRLDMAGYLWEKMVQNGCSPNVVT---YTSLI 297 (645)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li 297 (645)
+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++... .++.+
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence 34555556676666667777777777666542 23333332222 2344555667777777776655432 21222
Q ss_pred HHHHhcCCh-hHHHHHHHHHHh-CCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006437 298 KGFMEAKMF-SIAFSFLDMLES-EGHAPDLVFH--NVLIDCLSKMGSYDDALDVYDGLLELK 355 (645)
Q Consensus 298 ~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (645)
...+..+.. ..-..+++.+.+ .|..++.... .+-+....+.|..+.+.-+.+.+.+.+
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 222233322 334456666676 6665543221 123344455566554444444444433
No 304
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=38.12 E-value=2.4e+02 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 006437 232 KMGRIAEAYQLL 243 (645)
Q Consensus 232 ~~~~~~~a~~~~ 243 (645)
+.|+.+....++
T Consensus 33 ~~g~~~~v~~ll 44 (351)
T 3utm_A 33 RSGNEEKLMALL 44 (351)
T ss_dssp HHTCHHHHHHHC
T ss_pred HcCCHHHHHHHH
Confidence 344444443333
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.70 E-value=1.6e+02 Score=28.35 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=8.6
Q ss_pred HHHHhcCCHhHHHHHHhh
Q 006437 162 DVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~ 179 (645)
...+..|+.+-+.-+++.
T Consensus 52 ~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 52 HMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334444555555555543
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.63 E-value=2.1e+02 Score=25.02 Aligned_cols=89 Identities=18% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCC----ChhchHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006437 262 IDGFRRLRRLDMAGYLWEKMVQN--GCSP----NVVTYTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCL 335 (645)
Q Consensus 262 i~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 335 (645)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34455555566665555554421 1111 111122223333333333344444555522 34555566667788
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006437 336 SKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~ 353 (645)
.+.|+.++|.++|=+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 888888888888766543
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.11 E-value=1.3e+02 Score=28.24 Aligned_cols=16 Identities=0% Similarity=-0.178 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHH
Q 006437 334 CLSKMGSYDDALDVYD 349 (645)
Q Consensus 334 ~~~~~~~~~~a~~~~~ 349 (645)
..+..|+.+-+.-+++
T Consensus 250 ~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQ 265 (364)
T ss_dssp HHHHTCCHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHH
Confidence 3444555555554444
No 308
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.80 E-value=1.2e+02 Score=21.94 Aligned_cols=58 Identities=9% Similarity=-0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHH-HHHHHHHH-HHCCCCcCHHHHHHH
Q 006437 516 AYILYSQMKHIAVPPNAYTYRVMLLSFCKERN-IKM-VKRLLQDV-IDARIELDYHTSIRL 573 (645)
Q Consensus 516 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~-a~~~~~~~-~~~~~~~~~~~~~~l 573 (645)
|.++.+++...|+.|+..++.-++..|...+- .++ +.+++.-- ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 55666667777777777777777777755543 111 22222211 134666666655544
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.37 E-value=1.8e+02 Score=23.67 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 006437 103 VRGIVGELARVGCVI-KAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPN 153 (645)
Q Consensus 103 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (645)
+.++|..|...|+-. -+.-|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 555566665555432 233444555555556666666666666665554444
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.91 E-value=2.1e+02 Score=24.29 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHHH
Q 006437 334 CLSKMGSYDDALDVYDG 350 (645)
Q Consensus 334 ~~~~~~~~~~a~~~~~~ 350 (645)
..++.|+.+-+..+++.
T Consensus 203 ~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33444555544444443
No 311
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.74 E-value=1.6e+02 Score=24.19 Aligned_cols=28 Identities=7% Similarity=-0.091 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006437 567 YHTSIRLTKFIFKFHSSSSAVNQLVEMC 594 (645)
Q Consensus 567 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 594 (645)
...|+.++..+...|..++|+..+..--
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3456777788889999999999887643
No 312
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.82 E-value=2.5e+02 Score=24.86 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=7.9
Q ss_pred cCHHhHHHHHHHHHhcCC
Q 006437 253 LSVNAWTVLIDGFRRLRR 270 (645)
Q Consensus 253 ~~~~~~~~li~~~~~~~~ 270 (645)
++..+-...+.+....++
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444445555555544
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.30 E-value=59 Score=28.15 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=8.4
Q ss_pred HcCCCHHHHHHHHHHHH
Q 006437 438 CGARKIDEAINVYQGIV 454 (645)
Q Consensus 438 ~~~~~~~~a~~~~~~~~ 454 (645)
+..++...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555443
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.29 E-value=1.3e+02 Score=23.30 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 259 TVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 259 ~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.56 E-value=1.8e+02 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHhhcCCC
Q 006437 158 NIVMDVLFKIGRVDLGIKVLKETQLP 183 (645)
Q Consensus 158 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 183 (645)
+.++.-|...|+.++|.+.++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 34555555666666666666665544
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.44 E-value=1.7e+02 Score=23.02 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=6.3
Q ss_pred cchHHHHHHHHHHCC
Q 006437 201 VSNVKDVIGMMVRKG 215 (645)
Q Consensus 201 ~~~a~~~~~~m~~~~ 215 (645)
.-.|.++++.+.+.+
T Consensus 37 ~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 37 HPTADDIYKALEGKF 51 (145)
T ss_dssp CCCHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHhC
Confidence 334444444444433
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.35 E-value=2.4e+02 Score=23.95 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006437 333 DCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~ 353 (645)
...+..|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666554
No 318
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=31.03 E-value=2.1e+02 Score=23.14 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 006437 82 DVQSFDHMISVVTRLTGRFETVRGIVGELARVGC-VIKAQTFLLFLRIYWRGEMYGMVLEAFDEMG 146 (645)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 146 (645)
+..-+..++..+.........+..+|..+...+- ..+..-|..++.........+....+|+.+-
T Consensus 37 ~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D 102 (183)
T 1s6c_A 37 NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 102 (183)
T ss_dssp CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 4444444444333211233455556666544321 2344445555444444333444555555554
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.62 E-value=1.3e+02 Score=24.39 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=19.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcC
Q 006437 125 FLRIYWRGEMYGMVLEAFDEMGRF--GFTPNTFARNIVMDVLFKIG 168 (645)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g 168 (645)
++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444555555555443 33334333333444444444
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.31 E-value=4e+02 Score=26.10 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=76.7
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006437 50 PHIVHSTLLNCPSDLIALSFFIWCAKQRDYFHDVQSFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIY 129 (645)
Q Consensus 50 ~~~~~~~l~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 129 (645)
..++.-+.....+++.|+++-... +.+-....|-.-...+.. .|++++|.++-..-.+ |..-+..|.+.+-+.=
T Consensus 332 ~~ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~-~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 332 ENIIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFA-QGNYSEAAKVAANAPK-GILRTPDTIRRFQSVP 405 (494)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSC
T ss_pred ccchhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHH-cCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCC
Confidence 356666666778888888776554 332355556666777777 7999999887665543 4556777776655544
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHhh
Q 006437 130 WRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 179 (645)
...|...--++.|.-+.+.| ..+..----+++.....|+.+.....+.+
T Consensus 406 ~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 406 AQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp CCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 44566666667777766665 45554444455555555655555544443
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.25 E-value=3.3e+02 Score=24.88 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhh
Q 006437 293 YTSLIKGFMEAKMFSIAFSFLDMLESEGHAPDLVFHNVLIDCLSKMGS--YDDALDVYDGLLELKLVPDSYT 362 (645)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 362 (645)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+.+.+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 346777788888888888888887532111 12223333334444332 4556677777776665444333
No 322
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.24 E-value=2.3e+02 Score=22.76 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006437 237 AEAYQLLGLMITLGTSLSVNAWTVLIDGFRRLRRLDMAGYLWEKMVQNGCS 287 (645)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 287 (645)
+.+..+++.+.+.|+-.|...-...+....+.| -....+-.++.+.|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 344455555555555544444444444444333 1233455555555554
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.20 E-value=2.1e+02 Score=23.47 Aligned_cols=16 Identities=0% Similarity=0.187 Sum_probs=7.5
Q ss_pred HHhcCCHhHHHHHHhh
Q 006437 164 LFKIGRVDLGIKVLKE 179 (645)
Q Consensus 164 ~~~~g~~~~A~~~~~~ 179 (645)
.+..|+.+-+..+++.
T Consensus 46 A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 46 AVHNNDIEIAKALIDR 61 (201)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3344555544444443
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.12 E-value=1.8e+02 Score=22.62 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437 416 NTMLDKGFTPDNYSFVGLLRGLCGAR-KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476 (645)
Q Consensus 416 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (645)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..+..--++.+...|
T Consensus 7 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 325
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.02 E-value=1.5e+02 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=4.5
Q ss_pred HHHHHHHHHHC
Q 006437 551 VKRLLQDVIDA 561 (645)
Q Consensus 551 a~~~~~~~~~~ 561 (645)
+.++.+.+.+.
T Consensus 36 ~~el~~~l~~~ 46 (83)
T 2fu4_A 36 AEDLYKRLIDM 46 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33444444433
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.01 E-value=2.2e+02 Score=24.16 Aligned_cols=13 Identities=8% Similarity=0.396 Sum_probs=6.5
Q ss_pred cCChhHHHHHHHH
Q 006437 97 TGRFETVRGIVGE 109 (645)
Q Consensus 97 ~~~~~~a~~~~~~ 109 (645)
.|+.+....+++.
T Consensus 16 ~g~~~~v~~ll~~ 28 (231)
T 3aji_A 16 SGKLDELKERILA 28 (231)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHh
Confidence 3555555555443
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.38 E-value=1.5e+02 Score=20.32 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437 418 MLDKGFTPDNYSFVGLLRGLCGAR-KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476 (645)
Q Consensus 418 m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (645)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+..-.++.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555555433 23344444333 34455566666665555555555444444444444
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.78 E-value=2.4e+02 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=17.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006437 192 LCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCK 232 (645)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 232 (645)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+..
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33333334444555555555444433333333333333333
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.78 E-value=1.4e+02 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHhhcCCC
Q 006437 158 NIVMDVLFKIGRVDLGIKVLKETQLP 183 (645)
Q Consensus 158 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 183 (645)
+.++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 44555565666666666666665544
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.76 E-value=2.3e+02 Score=22.26 Aligned_cols=61 Identities=11% Similarity=-0.005 Sum_probs=35.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006437 108 GELARVGCVIKAQTFLLFLRIYWRGEMYGMVLEAFDEMGRFGFTPNTFARNIVMDVLFKIGR 169 (645)
Q Consensus 108 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 169 (645)
+.+.+.|..++..-. .++..+...+..-.|.++++.+.+.+...+..+.-.-++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345556665554433 4444555555566677777777766555565555555666666553
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.70 E-value=2.9e+02 Score=23.31 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=8.8
Q ss_pred HHHHhcCCHhHHHHHHhh
Q 006437 162 DVLFKIGRVDLGIKVLKE 179 (645)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~ 179 (645)
...++.|+.+....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555543
No 332
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.47 E-value=1.3e+02 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 514 EEAYILYSQMKHIAVPPN--AYTYRVMLLSFCKERNIKMVKRLLQDVIDARI 563 (645)
Q Consensus 514 ~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 563 (645)
.+..++.--+-...+.|. .-++..-+..+.+.+++..|..+-+++++.+.
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 334555555655556664 33555666777788888888888888877653
No 333
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.30 E-value=5.6e+02 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCCh
Q 006437 567 YHTSIRLTKF-----IFKFHSSSSAVNQLVEMCNLGLIPDE 602 (645)
Q Consensus 567 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~ 602 (645)
..++..|.+. +...|++++|++.++++ ++-|..
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~ 570 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 3455544432 36788888888888776 355543
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.93 E-value=2e+02 Score=23.27 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcC
Q 006437 190 IALCNLCKLNDVSNVKDVIGMMVRK--GFYPNVRMFEILLNCFCKMG 234 (645)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~ 234 (645)
.++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444555555555555554 43344444333344444444
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.50 E-value=86 Score=24.72 Aligned_cols=9 Identities=0% Similarity=0.110 Sum_probs=3.8
Q ss_pred HhcCChhHH
Q 006437 301 MEAKMFSIA 309 (645)
Q Consensus 301 ~~~~~~~~a 309 (645)
+..|+.+-+
T Consensus 141 ~~~~~~~~v 149 (156)
T 1bd8_A 141 LQRGAQDLV 149 (156)
T ss_dssp HHSCCHHHH
T ss_pred HHcCcHHHH
Confidence 344444433
No 336
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.19 E-value=1.3e+02 Score=19.89 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437 85 SFDHMISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE 133 (645)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 133 (645)
.++.++..+++ ..-.++++..+.+....| ..+.++|..-.+.+++..
T Consensus 4 l~~Qll~l~Ae-d~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQ-DYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 46677777777 566888888888888888 578888887777765543
No 337
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.86 E-value=5.3e+02 Score=25.71 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=27.2
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--hhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 292 TYTSLIKGFMEAKMFSIAFSFLDMLESEGH-APDL--VFH-NVLIDCLSKMGSYDDALDVYDGLLE 353 (645)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (645)
.+|.+++.|...+.++.|..+.....--.. .++. .+| -.+.+.+.-.+++.+|.+.+....+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555555554421000 0000 111 1123444455566666666555544
No 338
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.84 E-value=1.2e+02 Score=24.43 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006437 258 WTVLIDGFRRLRRLDMAGYLWEKMV 282 (645)
Q Consensus 258 ~~~li~~~~~~~~~~~a~~~~~~m~ 282 (645)
.+.++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555555566666666555553
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.56 E-value=1.4e+02 Score=23.06 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006437 89 MISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM 134 (645)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 134 (645)
++..+.. .+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~-~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLET-LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHH-CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHh-CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444 34455666666666665545555565555555555553
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.50 E-value=2.5e+02 Score=22.13 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006437 201 VSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKM 233 (645)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 233 (645)
.-.|.++++.+.+.+...+..|.-.-++.+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 445555555555544444444433333333333
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.12 E-value=7.2e+02 Score=27.01 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCc---chHHHHHHHHHHCC----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006437 190 IALCNLCKLNDV---SNVKDVIGMMVRKG----FYPNVRMFEILLNCFCKMGRIAEAYQLLGLMITLGTSLSVNAWTVLI 262 (645)
Q Consensus 190 ~ll~~~~~~g~~---~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (645)
.++...|..|.. +.|.+.|+.....+ +.||. ...+.....+.|..++-..+++.+.+.. +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 455666666654 35666676655431 33442 3333444445677666666676666532 344455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhchHHHHHHHHhcC-ChhHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhc
Q 006437 263 DGFRRLRRLDMAGYLWEKMVQNGCSPNVVTYTSLIKGFMEAK-MFSIAFSFLDMLESE---GHAPDLVFHNVLIDCLSKM 338 (645)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~ 338 (645)
.+++...+.+...++++............ ...++.+...+. ..+.|++.+..=.+. ........+..++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQD-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 77777777777777777665432111112 222333333322 233444444332111 1122334556666665554
Q ss_pred CCHHHHHHHHHHHH
Q 006437 339 GSYDDALDVYDGLL 352 (645)
Q Consensus 339 ~~~~~a~~~~~~~~ 352 (645)
-.-++-.+-++...
T Consensus 845 ~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 845 FSSEFELQQLEQFK 858 (909)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 43333333334433
No 342
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.11 E-value=2.3e+02 Score=22.39 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHhcCCHHHHHHHH
Q 006437 229 CFCKMGRIAEAYQLL 243 (645)
Q Consensus 229 ~~~~~~~~~~a~~~~ 243 (645)
..++.|+.+.+..++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 344455555544444
No 343
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.08 E-value=2.3e+02 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006437 477 RCHKAIQLFRRAIVEKYPLDVVSYTVAIRG 506 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (645)
.+.+|..-+++.... ++|......++..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~ 30 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQR 30 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 345555555555433 2344444444433
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.72 E-value=1.9e+02 Score=22.94 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006437 414 LYNTMLDKGFTPDNYSFVGLLRGLCGAR-KIDEAINVYQGIVMNNPAVNAHVHTAIVDRLIEAG 476 (645)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (645)
+.+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|..--++.+...|
T Consensus 4 ~~~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 4 NNQALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 345
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=23.59 E-value=3.7e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006437 220 VRMFEILLNCFCKMGRIAEAYQLLGLM 246 (645)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 246 (645)
..++.-++..+.+...+-++...|+.+
T Consensus 229 ~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 229 VVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp SBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 346677777777777777777766654
No 346
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.55 E-value=2.6e+02 Score=22.03 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006437 100 FETVRGIVGELARVGCVIKAQTFLLFLRIYWRGE 133 (645)
Q Consensus 100 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 133 (645)
.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444544444443344444444444444333
No 347
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.33 E-value=3.3e+02 Score=22.88 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006437 510 GGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKER 546 (645)
Q Consensus 510 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 546 (645)
-.+++.|+-.+-+|++.|-.|....=..++-+....|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3456666666666666555454444444444444433
No 348
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.26 E-value=3.4e+02 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC
Q 006437 332 IDCLSKMGSYDDALDVYDGLLELKL 356 (645)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~ 356 (645)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444556666666566666665554
No 349
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.83 E-value=4.5e+02 Score=24.16 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006437 498 VSYTVAIRGLLEGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERNIKMVKRLLQDVIDA 561 (645)
Q Consensus 498 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 561 (645)
-+...-|....+.+++..|-.+.+++++. .|+... .+.|.+++....+.
T Consensus 199 LaLr~AM~~a~K~KNy~tAa~fArrLLel--~p~~~~-------------~~qArkil~~ce~~ 247 (320)
T 3mkr_B 199 LVLRTALNLFFKLKNFRTAAAFARRLLEL--GPKPEV-------------AQQTRKILSACEKN 247 (320)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHHHT--CCCHHH-------------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCHHH-------------HHHHHHHHHHHhcC
Confidence 34566677778999999999999999984 455432 25567776666543
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.82 E-value=1.3e+02 Score=23.56 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=23.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006437 89 MISVVTRLTGRFETVRGIVGELARVGCVIKAQTFLLFLRIYWRGEM 134 (645)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 134 (645)
++..+.. .+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 19 Il~~L~~-~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQE-VEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTT-CSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHh-CCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444 34455566666666555544555555555555554443
No 351
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.65 E-value=2e+02 Score=25.42 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=26.6
Q ss_pred cCChhHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 006437 97 TGRFETVRGIVGELARVGCVI-------KAQTFLLFLRIYW--RGEMYGMVLEAFDEM 145 (645)
Q Consensus 97 ~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 145 (645)
.|+.+.+..+++.....+... +..-...|..++. +.|+.+-+..+++.-
T Consensus 23 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 23 QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 477887777777766555332 2222333444433 246666665555543
No 352
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.89 E-value=4.7e+02 Score=24.07 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006437 477 RCHKAIQLFRRAIVEKYPLD--VVSYTVAIRGLLEGGRTEEAYILYSQMKHIA 527 (645)
Q Consensus 477 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 527 (645)
+..+..++---+..-++.|. .-+...-|....+.+++..|-.+.+++++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444454444444443332 3345566666778888888888888888743
No 353
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.69 E-value=3.8e+02 Score=22.85 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 006437 509 EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN-----IKMVKRLLQDVIDARI 563 (645)
Q Consensus 509 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 563 (645)
+-.+++.|+-.+-+|.+.|-.|....=..++-+....|. ...|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345777777777777777766655555555555555442 2334444555555554
No 354
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.64 E-value=2.5e+02 Score=22.28 Aligned_cols=62 Identities=6% Similarity=0.049 Sum_probs=35.4
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCc
Q 006437 314 DMLESEGHAPDLVFHNVLIDCLSKMGSYDDALDVYDGLLELKLVPDSYTFCSLLSTVCLSGRF 376 (645)
Q Consensus 314 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 376 (645)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455566654433 2334555555555666777777777666566666666666666666644
No 355
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.46 E-value=1.1e+02 Score=19.83 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCCCCChhchHHHHHHH
Q 006437 272 DMAGYLWEKMVQNGCSPNVVTYTSLIKGF 300 (645)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (645)
++|.+.|.+|.+..-.+..-||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554332223334555555544
No 356
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.26 E-value=99 Score=19.48 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=21.6
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHH
Q 006437 553 RLLQDVIDARIELDYHTSIRLTKFIFKFHS--SSSAVNQLVEM 593 (645)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m 593 (645)
+.++.+++.|+..+ ....++.+.|. ++.|++++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 44556666666542 22235555565 77788888777
No 357
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.88 E-value=5.8e+02 Score=24.77 Aligned_cols=162 Identities=7% Similarity=-0.014 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-C---CcHHHHHHHHHHHHh
Q 006437 407 FPNQAVKLYNTMLDK--------GFTPDNYSFVGLLRGLCGARKIDEAINVYQGIVMNNP-A---VNAHVHTAIVDRLIE 474 (645)
Q Consensus 407 ~~~~a~~~~~~m~~~--------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~ 474 (645)
..++...+++..... ++..+......++.. ..|+...+..+++.+..... . ....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It---------- 233 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLK---------- 233 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECC----------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccC----------
Confidence 345666777666553 233455555555554 46888888888887765432 1 00111
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-
Q 006437 475 AGRCHKAIQLFRRAIVEKY---PLDVVSYTVAIRGLL---EGGRTEEAYILYSQMKHIAVPPNAYTYRVMLLSFCKERN- 547 (645)
Q Consensus 475 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~- 547 (645)
.+.. +++..... ..+...+-.++.++. +.++.+.|+.++.+|.+.|..|....-..+..++...|.
T Consensus 234 ---~e~v----~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 234 ---PELL----TEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ---HHHH----HHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ---HHHH----HHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 1111 12222110 011122223344443 457999999999999999877776666666666666663
Q ss_pred ----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 006437 548 ----IKMVKRLLQDVIDARIELDYHTSIRLTKFIFKFHSSSSAV 587 (645)
Q Consensus 548 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 587 (645)
...|...++.....|..--.......+-.++.+-+...+.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~ 350 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVY 350 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHH
Confidence 3345555666666665322222333333344444444433
No 358
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.85 E-value=5.9e+02 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=16.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006437 218 PNVRMFEILLNCFCKMGRIAEAYQLLGLMIT 248 (645)
Q Consensus 218 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (645)
.+......++.. ..|+..++..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344444444444 35667777666666653
No 359
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.26 E-value=1.9e+02 Score=22.68 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006437 190 IALCNLCKLNDVSNVKDVIGMMVRKGFYPNVRMFEILLNCFCKMGR 235 (645)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 235 (645)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4555565666677788888888777656666665555555555553
Done!