Query 006440
Match_columns 645
No_of_seqs 693 out of 4911
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 23:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 1.4E-89 3.1E-94 751.6 64.5 638 1-641 1-644 (668)
2 PRK06617 2-octaprenyl-6-methox 100.0 5.1E-43 1.1E-47 372.1 26.5 364 78-482 2-373 (374)
3 PRK06753 hypothetical protein; 100.0 1E-40 2.2E-45 355.4 38.7 355 78-466 1-355 (373)
4 PRK08013 oxidoreductase; Provi 100.0 5.8E-42 1.3E-46 367.4 28.4 378 76-481 2-391 (400)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.2E-41 2.7E-46 362.8 28.1 365 77-471 2-372 (387)
6 PRK08849 2-octaprenyl-3-methyl 100.0 2.1E-41 4.5E-46 361.3 28.6 369 77-482 3-384 (384)
7 PRK06475 salicylate hydroxylas 100.0 7.5E-40 1.6E-44 351.2 37.6 357 78-465 3-375 (400)
8 PRK07588 hypothetical protein; 100.0 2.5E-40 5.3E-45 354.4 33.3 364 78-468 1-368 (391)
9 PRK08850 2-octaprenyl-6-methox 100.0 6.7E-41 1.4E-45 360.1 28.5 377 76-481 3-391 (405)
10 PRK08773 2-octaprenyl-3-methyl 100.0 8E-41 1.7E-45 358.2 27.2 380 74-481 3-391 (392)
11 TIGR01989 COQ6 Ubiquinone bios 100.0 3E-40 6.5E-45 357.6 31.1 372 78-471 1-430 (437)
12 PRK05714 2-octaprenyl-3-methyl 100.0 8.6E-41 1.9E-45 359.6 25.4 377 77-482 2-395 (405)
13 PRK06185 hypothetical protein; 100.0 1.3E-39 2.8E-44 350.9 32.6 376 74-479 3-391 (407)
14 PRK07045 putative monooxygenas 100.0 9.4E-39 2E-43 341.8 36.8 361 75-463 3-372 (388)
15 TIGR03219 salicylate_mono sali 100.0 8.2E-39 1.8E-43 344.9 35.5 341 78-439 1-370 (414)
16 PRK08163 salicylate hydroxylas 100.0 3.2E-38 6.8E-43 338.9 39.0 343 76-439 3-353 (396)
17 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1E-39 2.2E-44 349.8 26.7 377 76-481 4-390 (391)
18 PRK07236 hypothetical protein; 100.0 2.5E-38 5.3E-43 338.0 36.1 334 75-439 4-372 (386)
19 PRK07538 hypothetical protein; 100.0 6.9E-38 1.5E-42 337.4 38.1 335 78-437 1-361 (413)
20 PRK07494 2-octaprenyl-6-methox 100.0 1.2E-39 2.5E-44 349.0 22.6 373 74-481 4-386 (388)
21 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.2E-38 4.7E-43 351.8 32.9 369 75-477 8-388 (538)
22 PRK05868 hypothetical protein; 100.0 8.3E-38 1.8E-42 331.2 35.7 336 78-436 2-346 (372)
23 PRK07364 2-octaprenyl-6-methox 100.0 1.4E-38 3E-43 343.9 29.3 377 75-482 16-404 (415)
24 PRK06996 hypothetical protein; 100.0 1.3E-38 2.9E-43 341.1 26.6 366 73-480 7-393 (398)
25 PRK07333 2-octaprenyl-6-methox 100.0 3.5E-38 7.6E-43 339.5 26.6 375 78-482 2-390 (403)
26 PRK06847 hypothetical protein; 100.0 1.2E-36 2.7E-41 324.2 37.5 341 76-439 3-348 (375)
27 PRK06184 hypothetical protein; 100.0 5E-37 1.1E-41 338.6 35.0 336 76-438 2-348 (502)
28 PRK06834 hypothetical protein; 100.0 8.8E-37 1.9E-41 332.8 35.1 367 76-486 2-374 (488)
29 KOG2614 Kynurenine 3-monooxyge 100.0 3.4E-37 7.3E-42 309.3 28.7 336 77-427 2-360 (420)
30 PRK09126 hypothetical protein; 100.0 6.4E-38 1.4E-42 336.1 25.1 368 76-471 2-377 (392)
31 PRK08244 hypothetical protein; 100.0 8.2E-37 1.8E-41 336.3 32.7 332 77-437 2-339 (493)
32 PRK08294 phenol 2-monooxygenas 100.0 3.3E-36 7.1E-41 337.0 37.1 342 75-439 30-409 (634)
33 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.2E-36 2.6E-41 325.2 26.9 359 79-471 1-370 (382)
34 PRK07608 ubiquinone biosynthes 100.0 1.9E-36 4E-41 324.4 26.9 375 77-480 5-387 (388)
35 PF01494 FAD_binding_3: FAD bi 100.0 1.3E-36 2.8E-41 321.3 25.2 341 77-434 1-355 (356)
36 TIGR01988 Ubi-OHases Ubiquinon 100.0 2.7E-36 5.8E-41 322.9 27.9 364 79-470 1-372 (385)
37 PRK07190 hypothetical protein; 100.0 3.5E-35 7.6E-40 319.9 36.9 333 76-438 4-343 (487)
38 PRK06126 hypothetical protein; 100.0 2.2E-35 4.8E-40 329.0 34.1 339 75-437 5-370 (545)
39 PRK08243 4-hydroxybenzoate 3-m 100.0 2.8E-35 6E-40 315.0 32.4 339 77-441 2-349 (392)
40 PRK05732 2-octaprenyl-6-methox 100.0 6.8E-36 1.5E-40 320.8 27.8 374 76-480 2-390 (395)
41 PRK08132 FAD-dependent oxidore 100.0 3.3E-35 7.3E-40 327.2 33.8 333 76-437 22-366 (547)
42 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 5.3E-35 1.1E-39 311.9 33.3 338 77-441 2-349 (390)
43 PLN02985 squalene monooxygenas 100.0 1E-34 2.2E-39 317.2 34.7 341 74-438 40-397 (514)
44 PTZ00367 squalene epoxidase; P 100.0 6.1E-34 1.3E-38 312.2 36.9 342 76-439 32-418 (567)
45 KOG3855 Monooxygenase involved 100.0 1E-29 2.2E-34 253.0 18.2 388 73-480 32-478 (481)
46 PRK08255 salicylyl-CoA 5-hydro 100.0 1.9E-28 4.2E-33 280.8 24.2 316 78-438 1-335 (765)
47 PLN00093 geranylgeranyl diphos 100.0 7.2E-27 1.6E-31 251.7 33.6 317 73-429 35-371 (450)
48 TIGR02032 GG-red-SF geranylger 100.0 5.7E-27 1.2E-31 241.2 28.0 288 78-397 1-295 (295)
49 TIGR02023 BchP-ChlP geranylger 100.0 4.1E-26 8.9E-31 243.8 33.0 307 78-430 1-323 (388)
50 PRK11445 putative oxidoreducta 100.0 1.4E-26 3.1E-31 243.6 26.8 306 78-428 2-317 (351)
51 TIGR02028 ChlP geranylgeranyl 99.9 4.9E-25 1.1E-29 235.4 32.8 312 78-429 1-332 (398)
52 COG0644 FixC Dehydrogenases (f 99.9 1.3E-23 2.8E-28 224.6 33.0 318 76-429 2-326 (396)
53 PRK10015 oxidoreductase; Provi 99.9 1.2E-23 2.6E-28 226.4 27.9 330 76-427 4-355 (429)
54 PRK10157 putative oxidoreducta 99.9 2.5E-23 5.4E-28 224.3 29.3 332 76-428 4-356 (428)
55 KOG1298 Squalene monooxygenase 99.9 1.1E-22 2.4E-27 200.6 24.9 345 73-436 41-395 (509)
56 TIGR01790 carotene-cycl lycope 99.9 5.5E-22 1.2E-26 212.4 28.9 307 79-430 1-321 (388)
57 TIGR01789 lycopene_cycl lycope 99.9 2.6E-20 5.7E-25 196.5 25.4 300 79-436 1-315 (370)
58 PLN02463 lycopene beta cyclase 99.9 1.5E-19 3.3E-24 193.9 27.4 288 74-403 25-334 (447)
59 PLN02697 lycopene epsilon cycl 99.8 1.5E-18 3.3E-23 188.8 31.5 313 75-429 106-441 (529)
60 PF04820 Trp_halogenase: Trypt 99.8 1.2E-18 2.5E-23 188.3 24.8 322 79-436 1-379 (454)
61 PF08491 SE: Squalene epoxidas 99.7 4.4E-16 9.6E-21 152.0 20.5 216 232-462 1-218 (276)
62 PF05834 Lycopene_cycl: Lycope 99.7 2.5E-15 5.3E-20 159.4 26.1 278 79-399 1-290 (374)
63 PF00498 FHA: FHA domain; Int 99.7 6.2E-17 1.3E-21 127.1 8.2 67 556-632 1-68 (68)
64 cd00060 FHA Forkhead associate 99.4 5.5E-12 1.2E-16 107.6 10.9 90 530-633 2-93 (102)
65 TIGR03354 VI_FHA type VI secre 99.3 5.5E-12 1.2E-16 132.4 10.9 83 541-639 15-101 (396)
66 PRK04176 ribulose-1,5-biphosph 99.2 6.4E-11 1.4E-15 118.3 12.9 136 76-250 24-179 (257)
67 PRK01747 mnmC bifunctional tRN 99.2 2.2E-09 4.8E-14 122.6 25.1 61 185-245 403-464 (662)
68 COG2081 Predicted flavoprotein 99.2 5.5E-11 1.2E-15 120.8 9.8 157 76-245 2-168 (408)
69 TIGR00292 thiazole biosynthesi 99.2 3E-10 6.5E-15 113.1 14.1 136 76-250 20-176 (254)
70 COG1716 FOG: FHA domain [Signa 99.2 4.6E-11 9.9E-16 114.6 8.0 70 555-636 90-159 (191)
71 KOG1882 Transcriptional regula 99.2 3.9E-11 8.5E-16 111.0 6.5 98 524-634 168-278 (293)
72 PF01266 DAO: FAD dependent ox 99.1 1.5E-09 3.3E-14 114.6 18.3 167 79-246 1-205 (358)
73 PRK12409 D-amino acid dehydrog 99.1 9.4E-09 2E-13 111.0 24.8 59 187-245 194-259 (410)
74 TIGR01377 soxA_mon sarcosine o 99.1 5.2E-09 1.1E-13 111.8 22.6 66 184-250 139-207 (380)
75 PRK11259 solA N-methyltryptoph 99.1 1.2E-08 2.6E-13 108.9 24.0 59 186-245 145-205 (376)
76 smart00240 FHA Forkhead associ 99.1 1.5E-10 3.2E-15 85.3 4.6 48 556-608 1-50 (52)
77 PF01946 Thi4: Thi4 family; PD 99.1 1.3E-09 2.8E-14 102.1 11.1 136 76-250 16-171 (230)
78 COG1635 THI4 Ribulose 1,5-bisp 99.0 4.3E-09 9.2E-14 97.9 12.7 134 77-250 30-184 (262)
79 PRK11728 hydroxyglutarate oxid 99.0 7E-09 1.5E-13 111.3 15.5 173 77-250 2-211 (393)
80 PRK13369 glycerol-3-phosphate 99.0 9.1E-08 2E-12 105.7 23.9 174 74-250 3-222 (502)
81 PRK00711 D-amino acid dehydrog 99.0 2.3E-07 5E-12 100.4 25.8 59 186-245 197-258 (416)
82 COG3456 Predicted component of 98.9 1.2E-09 2.6E-14 110.6 6.9 69 555-634 27-98 (430)
83 TIGR01373 soxB sarcosine oxida 98.9 1.7E-07 3.7E-12 101.1 24.1 41 71-111 24-66 (407)
84 PF03486 HI0933_like: HI0933-l 98.9 4E-09 8.8E-14 112.0 10.5 145 78-245 1-167 (409)
85 PRK05192 tRNA uridine 5-carbox 98.9 1.9E-08 4.1E-13 110.3 15.9 151 75-245 2-158 (618)
86 PRK12266 glpD glycerol-3-phosp 98.9 2E-07 4.4E-12 102.9 24.1 60 186-245 151-217 (508)
87 KOG2415 Electron transfer flav 98.9 2.1E-07 4.6E-12 94.1 20.6 306 75-403 74-424 (621)
88 PF13738 Pyr_redox_3: Pyridine 98.9 7.1E-09 1.5E-13 100.3 9.8 135 81-246 1-140 (203)
89 COG0579 Predicted dehydrogenas 98.9 2.1E-08 4.5E-13 105.5 12.5 175 76-250 2-217 (429)
90 KOG1881 Anion exchanger adapto 98.8 2.1E-09 4.6E-14 114.8 2.6 74 554-637 177-261 (793)
91 COG0665 DadA Glycine/D-amino a 98.8 7.7E-07 1.7E-11 95.3 21.8 63 185-248 151-216 (387)
92 PF01134 GIDA: Glucose inhibit 98.8 1.4E-07 2.9E-12 98.3 15.2 144 79-242 1-150 (392)
93 COG3380 Predicted NAD/FAD-depe 98.8 5.6E-08 1.2E-12 93.3 11.0 142 79-239 3-155 (331)
94 PLN02172 flavin-containing mon 98.7 1.3E-07 2.8E-12 102.7 13.5 150 75-245 8-174 (461)
95 PRK13339 malate:quinone oxidor 98.7 1.3E-07 2.8E-12 102.8 13.1 69 182-250 176-254 (497)
96 TIGR03329 Phn_aa_oxid putative 98.7 1.7E-07 3.7E-12 102.6 13.8 59 185-245 178-238 (460)
97 TIGR03364 HpnW_proposed FAD de 98.7 2.3E-07 5E-12 98.6 14.0 56 185-245 140-198 (365)
98 PLN02464 glycerol-3-phosphate 98.7 1.8E-06 4E-11 97.4 21.1 65 186-250 228-303 (627)
99 PRK05257 malate:quinone oxidor 98.6 5.4E-07 1.2E-11 98.7 15.9 69 182-250 175-253 (494)
100 PF12831 FAD_oxidored: FAD dep 98.6 4.7E-08 1E-12 105.7 7.4 148 79-250 1-155 (428)
101 PRK11101 glpA sn-glycerol-3-ph 98.6 3E-07 6.6E-12 102.4 12.6 61 185-245 144-212 (546)
102 KOG1399 Flavin-containing mono 98.6 2.4E-07 5.1E-12 98.9 10.4 136 75-243 4-152 (448)
103 TIGR00275 flavoprotein, HI0933 98.6 6.3E-07 1.4E-11 96.0 13.7 153 81-244 1-160 (400)
104 PF00743 FMO-like: Flavin-bind 98.6 2.6E-07 5.6E-12 101.8 10.8 138 78-245 2-151 (531)
105 PTZ00383 malate:quinone oxidor 98.6 9.5E-07 2.1E-11 96.4 14.8 65 185-250 206-280 (497)
106 TIGR01292 TRX_reduct thioredox 98.6 3.3E-07 7.2E-12 94.3 10.8 109 78-244 1-112 (300)
107 TIGR01320 mal_quin_oxido malat 98.6 6E-07 1.3E-11 98.2 13.2 68 183-250 171-247 (483)
108 COG0578 GlpA Glycerol-3-phosph 98.5 6.4E-06 1.4E-10 88.8 20.1 173 75-250 10-232 (532)
109 COG2072 TrkA Predicted flavopr 98.5 6.2E-07 1.3E-11 97.0 12.4 135 74-244 5-144 (443)
110 PRK11883 protoporphyrinogen ox 98.5 6.3E-05 1.4E-09 82.3 28.5 55 192-246 223-277 (451)
111 TIGR00562 proto_IX_ox protopor 98.5 2.4E-05 5.2E-10 85.9 24.3 49 195-243 230-278 (462)
112 PRK12416 protoporphyrinogen ox 98.5 9E-06 1.9E-10 89.3 20.1 59 191-250 227-285 (463)
113 TIGR00136 gidA glucose-inhibit 98.5 2.2E-06 4.8E-11 94.1 14.6 148 78-245 1-155 (617)
114 KOG1880 Nuclear inhibitor of p 98.5 7.2E-08 1.6E-12 92.7 2.8 107 515-637 5-114 (337)
115 PRK07804 L-aspartate oxidase; 98.5 3.4E-06 7.3E-11 94.0 16.4 37 75-111 14-50 (541)
116 PRK15317 alkyl hydroperoxide r 98.5 1.3E-06 2.9E-11 96.9 13.1 112 75-244 209-322 (517)
117 PLN02661 Putative thiazole syn 98.4 4.8E-06 1.1E-10 85.5 15.1 37 75-111 90-127 (357)
118 TIGR03140 AhpF alkyl hydropero 98.4 1.8E-06 4E-11 95.7 13.1 112 75-244 210-323 (515)
119 PRK06481 fumarate reductase fl 98.4 9.8E-06 2.1E-10 89.7 18.5 36 76-111 60-95 (506)
120 TIGR00551 nadB L-aspartate oxi 98.4 7.3E-06 1.6E-10 90.4 16.9 59 190-248 128-193 (488)
121 PRK05335 tRNA (uracil-5-)-meth 98.4 1.6E-06 3.5E-11 91.2 11.1 114 78-215 3-126 (436)
122 TIGR01813 flavo_cyto_c flavocy 98.4 3.8E-06 8.2E-11 91.6 14.3 33 79-111 1-34 (439)
123 KOG2820 FAD-dependent oxidored 98.4 3.6E-06 7.7E-11 83.6 12.1 168 74-243 4-211 (399)
124 PRK09231 fumarate reductase fl 98.4 4.3E-06 9.2E-11 93.9 14.3 57 191-247 134-199 (582)
125 PRK08274 tricarballylate dehyd 98.4 6.6E-06 1.4E-10 90.4 15.2 36 76-111 3-38 (466)
126 COG0492 TrxB Thioredoxin reduc 98.4 2.9E-06 6.3E-11 86.6 11.4 112 76-246 2-117 (305)
127 TIGR01176 fum_red_Fp fumarate 98.3 1.5E-05 3.1E-10 89.5 16.4 35 77-111 3-39 (580)
128 TIGR01812 sdhA_frdA_Gneg succi 98.3 2.3E-06 5E-11 96.2 9.5 33 79-111 1-33 (566)
129 PRK06069 sdhA succinate dehydr 98.3 1.6E-05 3.4E-10 89.5 15.7 36 76-111 4-42 (577)
130 TIGR03143 AhpF_homolog putativ 98.3 3.6E-06 7.8E-11 94.1 10.3 34 76-109 3-36 (555)
131 PRK07121 hypothetical protein; 98.3 2.7E-05 5.8E-10 86.1 17.1 36 76-111 19-54 (492)
132 PRK08401 L-aspartate oxidase; 98.2 1.2E-05 2.6E-10 88.1 13.9 33 78-110 2-34 (466)
133 PF13454 NAD_binding_9: FAD-NA 98.2 1.7E-05 3.7E-10 73.1 12.6 57 186-242 90-155 (156)
134 PRK05945 sdhA succinate dehydr 98.2 2.8E-06 6.2E-11 95.4 8.2 36 76-111 2-39 (575)
135 PRK06175 L-aspartate oxidase; 98.2 2.5E-05 5.5E-10 84.6 15.0 35 76-111 3-37 (433)
136 PLN02568 polyamine oxidase 98.2 4E-05 8.7E-10 84.9 16.5 53 190-242 242-294 (539)
137 PF00070 Pyr_redox: Pyridine n 98.2 3.6E-05 7.8E-10 62.1 11.8 33 79-111 1-33 (80)
138 PRK09897 hypothetical protein; 98.2 1.5E-05 3.3E-10 87.6 12.3 40 204-243 125-165 (534)
139 PF13450 NAD_binding_8: NAD(P) 98.2 2.8E-06 6E-11 66.1 4.7 30 82-111 1-30 (68)
140 PRK08010 pyridine nucleotide-d 98.1 1.2E-05 2.7E-10 87.5 10.8 35 76-110 2-36 (441)
141 PF00890 FAD_binding_2: FAD bi 98.1 3.3E-05 7.2E-10 83.6 14.1 33 79-111 1-33 (417)
142 PRK07573 sdhA succinate dehydr 98.1 5.9E-05 1.3E-09 85.6 16.2 35 76-110 34-68 (640)
143 COG1231 Monoamine oxidase [Ami 98.1 2.2E-05 4.7E-10 81.9 11.4 37 75-111 5-41 (450)
144 PRK08071 L-aspartate oxidase; 98.1 4.4E-05 9.5E-10 84.5 14.5 34 77-111 3-36 (510)
145 PRK05976 dihydrolipoamide dehy 98.1 2.1E-05 4.6E-10 86.5 12.0 34 76-109 3-36 (472)
146 PRK06854 adenylylsulfate reduc 98.1 7.2E-05 1.6E-09 84.5 16.3 36 76-111 10-47 (608)
147 PRK10262 thioredoxin reductase 98.1 2.2E-05 4.8E-10 81.8 11.1 35 75-109 4-38 (321)
148 PRK06467 dihydrolipoamide dehy 98.1 2.3E-05 5E-10 86.0 11.4 35 76-110 3-37 (471)
149 PRK14694 putative mercuric red 98.1 7.9E-05 1.7E-09 81.8 15.6 36 74-109 3-38 (468)
150 PRK05249 soluble pyridine nucl 98.0 7.6E-05 1.6E-09 81.9 14.8 36 75-110 3-38 (461)
151 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 3.5E-05 7.6E-10 81.8 11.2 34 78-111 1-34 (433)
152 PRK06452 sdhA succinate dehydr 98.0 0.00017 3.6E-09 80.9 17.1 35 76-110 4-38 (566)
153 PRK07057 sdhA succinate dehydr 98.0 0.00018 3.9E-09 81.0 17.3 36 75-110 10-45 (591)
154 PLN02507 glutathione reductase 98.0 5.5E-05 1.2E-09 83.5 12.7 35 75-109 23-57 (499)
155 KOG2844 Dimethylglycine dehydr 98.0 0.00015 3.2E-09 78.3 15.1 81 184-265 181-264 (856)
156 PRK07803 sdhA succinate dehydr 98.0 1.6E-05 3.6E-10 89.9 8.7 35 76-110 7-41 (626)
157 COG1232 HemY Protoporphyrinoge 98.0 5.8E-05 1.3E-09 80.4 11.9 57 192-250 217-273 (444)
158 PF07992 Pyr_redox_2: Pyridine 98.0 1.3E-05 2.8E-10 77.2 6.6 32 79-110 1-32 (201)
159 PLN02529 lysine-specific histo 98.0 5.3E-06 1.2E-10 94.0 4.3 72 31-110 122-193 (738)
160 PRK08641 sdhA succinate dehydr 98.0 0.00013 2.9E-09 82.1 15.5 36 76-111 2-37 (589)
161 PTZ00139 Succinate dehydrogena 98.0 0.00022 4.7E-09 80.7 17.0 36 76-111 28-63 (617)
162 PRK06327 dihydrolipoamide dehy 98.0 0.0001 2.2E-09 81.1 14.0 33 76-108 3-35 (475)
163 PRK12842 putative succinate de 97.9 0.00012 2.6E-09 82.3 14.5 36 76-111 8-43 (574)
164 PRK06416 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 80.3 14.1 35 76-110 3-37 (462)
165 PLN00128 Succinate dehydrogena 97.9 0.00022 4.7E-09 80.8 15.7 36 76-111 49-84 (635)
166 PRK09078 sdhA succinate dehydr 97.9 0.00028 6.1E-09 79.6 16.3 35 76-110 11-45 (598)
167 PRK09077 L-aspartate oxidase; 97.9 0.00017 3.8E-09 80.3 14.5 35 76-111 7-41 (536)
168 KOG2665 Predicted FAD-dependen 97.9 7.8E-05 1.7E-09 73.4 9.7 177 73-250 44-263 (453)
169 PTZ00058 glutathione reductase 97.9 5.9E-05 1.3E-09 83.9 10.1 36 74-109 45-80 (561)
170 PRK12834 putative FAD-binding 97.8 0.00047 1E-08 77.2 17.0 35 76-110 3-37 (549)
171 PRK06134 putative FAD-binding 97.8 0.00036 7.7E-09 78.6 16.1 36 75-110 10-45 (581)
172 PRK06263 sdhA succinate dehydr 97.8 0.00027 5.9E-09 79.0 15.0 34 76-110 6-39 (543)
173 COG1233 Phytoene dehydrogenase 97.8 1.7E-05 3.6E-10 87.3 5.2 36 76-111 2-37 (487)
174 PRK08205 sdhA succinate dehydr 97.8 7.1E-05 1.5E-09 84.3 10.2 35 76-111 4-38 (583)
175 PLN02815 L-aspartate oxidase 97.8 0.00029 6.4E-09 79.0 15.0 36 75-111 27-62 (594)
176 PF06039 Mqo: Malate:quinone o 97.8 0.00029 6.3E-09 74.0 13.6 62 184-245 175-245 (488)
177 PRK08958 sdhA succinate dehydr 97.8 0.00035 7.5E-09 78.7 15.5 35 77-111 7-41 (588)
178 PRK08275 putative oxidoreducta 97.8 0.00039 8.5E-09 77.9 15.3 36 76-111 8-45 (554)
179 PRK09754 phenylpropionate diox 97.8 0.00014 3.1E-09 78.1 11.3 34 77-110 3-38 (396)
180 PRK08626 fumarate reductase fl 97.8 0.00034 7.3E-09 79.6 14.2 36 76-111 4-39 (657)
181 KOG2852 Possible oxidoreductas 97.8 0.00017 3.6E-09 70.3 9.7 165 76-245 9-209 (380)
182 PRK07395 L-aspartate oxidase; 97.7 0.00022 4.8E-09 79.5 12.4 36 75-111 7-42 (553)
183 PRK04965 NADH:flavorubredoxin 97.7 0.00018 3.9E-09 76.7 11.3 99 78-245 142-240 (377)
184 PTZ00153 lipoamide dehydrogena 97.7 0.00081 1.8E-08 76.1 16.4 33 77-109 116-148 (659)
185 PLN02546 glutathione reductase 97.7 0.00021 4.6E-09 79.5 11.3 34 75-108 77-110 (558)
186 TIGR01438 TGR thioredoxin and 97.7 0.00022 4.9E-09 78.4 11.2 33 77-109 2-34 (484)
187 COG0445 GidA Flavin-dependent 97.7 0.00015 3.2E-09 77.1 9.1 145 76-243 3-157 (621)
188 COG3075 GlpB Anaerobic glycero 97.7 6E-05 1.3E-09 74.7 5.4 51 77-137 2-52 (421)
189 PRK07251 pyridine nucleotide-d 97.7 4.8E-05 1E-09 82.9 5.3 35 76-110 2-36 (438)
190 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.00022 4.7E-09 76.8 10.1 36 75-110 2-37 (454)
191 PRK06370 mercuric reductase; V 97.6 5.5E-05 1.2E-09 83.0 5.4 36 74-109 2-37 (463)
192 PRK06116 glutathione reductase 97.6 5.8E-05 1.3E-09 82.5 5.3 34 76-109 3-36 (450)
193 KOG0029 Amine oxidase [Seconda 97.6 6E-05 1.3E-09 82.2 5.3 38 73-110 11-48 (501)
194 PRK12839 hypothetical protein; 97.6 0.003 6.4E-08 70.9 18.9 38 74-111 5-42 (572)
195 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.008 1.7E-07 64.2 21.4 62 184-245 129-191 (381)
196 PRK07208 hypothetical protein; 97.6 6.3E-05 1.4E-09 83.0 5.4 36 75-110 2-37 (479)
197 PRK07845 flavoprotein disulfid 97.6 0.00067 1.5E-08 74.4 13.3 33 78-110 2-34 (466)
198 PRK07512 L-aspartate oxidase; 97.6 0.00013 2.8E-09 80.9 7.5 34 76-111 8-41 (513)
199 PRK13512 coenzyme A disulfide 97.6 0.00032 6.9E-09 76.3 10.4 32 79-110 3-36 (438)
200 PRK14727 putative mercuric red 97.6 0.00051 1.1E-08 75.6 12.1 34 76-109 15-48 (479)
201 PRK12843 putative FAD-binding 97.6 0.002 4.3E-08 72.6 16.9 35 76-110 15-49 (578)
202 TIGR01811 sdhA_Bsu succinate d 97.6 0.00081 1.7E-08 75.9 13.7 31 80-110 1-31 (603)
203 PRK05249 soluble pyridine nucl 97.6 0.00055 1.2E-08 75.1 12.2 101 77-247 175-275 (461)
204 PRK09754 phenylpropionate diox 97.6 0.00055 1.2E-08 73.5 11.8 98 78-245 145-242 (396)
205 PTZ00318 NADH dehydrogenase-li 97.6 0.00059 1.3E-08 73.9 12.1 36 75-110 8-43 (424)
206 PRK12845 3-ketosteroid-delta-1 97.6 0.0019 4.1E-08 72.3 16.4 37 74-111 13-49 (564)
207 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.00075 1.6E-08 72.7 12.6 103 76-248 172-276 (454)
208 TIGR01421 gluta_reduc_1 glutat 97.6 7E-05 1.5E-09 81.7 4.8 33 77-109 2-34 (450)
209 PRK09564 coenzyme A disulfide 97.5 0.00023 5E-09 77.7 8.8 32 79-110 2-35 (444)
210 COG0029 NadB Aspartate oxidase 97.5 0.00097 2.1E-08 70.3 12.6 33 79-112 9-41 (518)
211 TIGR02352 thiamin_ThiO glycine 97.5 0.0057 1.2E-07 63.9 18.8 62 184-246 131-195 (337)
212 PRK06912 acoL dihydrolipoamide 97.5 0.00089 1.9E-08 73.4 12.9 32 79-110 2-33 (458)
213 KOG0615 Serine/threonine prote 97.5 0.00013 2.8E-09 74.5 5.8 82 543-639 57-153 (475)
214 TIGR01424 gluta_reduc_2 glutat 97.5 8.1E-05 1.8E-09 81.2 4.8 33 77-109 2-34 (446)
215 TIGR02061 aprA adenosine phosp 97.5 0.00029 6.2E-09 79.1 9.0 33 79-111 1-37 (614)
216 COG3349 Uncharacterized conser 97.5 8.7E-05 1.9E-09 78.9 4.6 34 78-111 1-34 (485)
217 PRK06115 dihydrolipoamide dehy 97.5 9.6E-05 2.1E-09 81.1 5.1 34 76-109 2-35 (466)
218 PF13434 K_oxygenase: L-lysine 97.5 0.00058 1.3E-08 71.3 10.6 151 77-250 2-165 (341)
219 PRK07846 mycothione reductase; 97.5 0.00093 2E-08 72.9 12.6 99 77-246 166-264 (451)
220 TIGR02485 CobZ_N-term precorri 97.5 0.001 2.2E-08 72.3 12.9 60 191-250 124-189 (432)
221 PRK07818 dihydrolipoamide dehy 97.5 0.00011 2.5E-09 80.6 5.3 34 76-109 3-36 (466)
222 PLN02852 ferredoxin-NADP+ redu 97.5 0.00019 4.1E-09 78.1 6.4 36 76-111 25-62 (491)
223 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00013 2.8E-09 80.8 5.2 34 78-111 2-35 (492)
224 TIGR03315 Se_ygfK putative sel 97.4 0.00017 3.6E-09 84.4 6.2 35 76-110 536-570 (1012)
225 PTZ00306 NADH-dependent fumara 97.4 0.0023 5E-08 77.8 15.9 37 75-111 407-443 (1167)
226 TIGR02730 carot_isom carotene 97.4 0.00014 2.9E-09 80.6 5.1 60 191-250 230-292 (493)
227 PRK07233 hypothetical protein; 97.4 0.00014 3E-09 79.1 4.9 53 192-244 200-254 (434)
228 PLN02576 protoporphyrinogen ox 97.4 0.00016 3.4E-09 80.2 5.4 35 76-110 11-46 (496)
229 PRK06292 dihydrolipoamide dehy 97.4 0.00015 3.3E-09 79.5 5.1 34 76-109 2-35 (460)
230 PRK06416 dihydrolipoamide dehy 97.4 0.0014 3.1E-08 71.8 12.6 99 78-246 173-274 (462)
231 PRK06567 putative bifunctional 97.4 0.00021 4.5E-09 82.3 5.9 35 75-109 381-415 (1028)
232 TIGR01350 lipoamide_DH dihydro 97.4 0.0017 3.7E-08 71.3 12.7 101 77-247 170-272 (461)
233 PRK06116 glutathione reductase 97.4 0.0018 3.9E-08 70.8 12.7 99 77-245 167-266 (450)
234 PRK13800 putative oxidoreducta 97.4 0.0036 7.8E-08 74.2 16.0 36 76-111 12-47 (897)
235 PRK12831 putative oxidoreducta 97.4 0.00026 5.6E-09 77.4 6.0 36 75-110 138-173 (464)
236 PRK12779 putative bifunctional 97.3 0.0002 4.4E-09 84.3 5.4 35 76-110 305-339 (944)
237 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00022 4.8E-09 75.1 5.1 33 78-110 2-34 (377)
238 PRK07843 3-ketosteroid-delta-1 97.3 0.00046 1E-08 77.3 8.0 36 76-111 6-41 (557)
239 KOG2853 Possible oxidoreductas 97.3 0.0031 6.7E-08 63.1 12.5 36 77-112 86-125 (509)
240 TIGR02053 MerA mercuric reduct 97.3 0.00021 4.5E-09 78.5 5.0 32 78-109 1-32 (463)
241 TIGR01350 lipoamide_DH dihydro 97.3 0.00021 4.6E-09 78.4 4.9 33 77-109 1-33 (461)
242 PLN02268 probable polyamine ox 97.3 0.00024 5.2E-09 77.4 5.0 39 204-242 212-250 (435)
243 COG4529 Uncharacterized protei 97.3 0.0013 2.8E-08 69.6 10.0 46 204-249 122-169 (474)
244 TIGR03452 mycothione_red mycot 97.3 0.0024 5.2E-08 69.8 12.5 98 77-245 169-266 (452)
245 PLN02507 glutathione reductase 97.3 0.0026 5.7E-08 70.3 12.9 100 77-246 203-302 (499)
246 TIGR02734 crtI_fam phytoene de 97.3 0.00023 4.9E-09 79.1 4.4 61 190-250 219-282 (502)
247 PRK04965 NADH:flavorubredoxin 97.2 0.0018 3.8E-08 69.1 10.8 33 78-110 3-37 (377)
248 PTZ00363 rab-GDP dissociation 97.2 0.00029 6.3E-09 76.0 4.7 36 75-110 2-37 (443)
249 PTZ00052 thioredoxin reductase 97.2 0.00033 7.2E-09 77.4 5.1 33 77-109 5-37 (499)
250 TIGR01316 gltA glutamate synth 97.2 0.00047 1E-08 75.2 6.1 36 75-110 131-166 (449)
251 TIGR01424 gluta_reduc_2 glutat 97.2 0.0035 7.6E-08 68.4 13.0 98 77-244 166-263 (446)
252 PRK07845 flavoprotein disulfid 97.2 0.0034 7.4E-08 68.9 12.9 100 78-247 178-277 (466)
253 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0019 4.1E-08 68.5 10.4 32 79-110 1-35 (364)
254 PTZ00188 adrenodoxin reductase 97.2 0.00047 1E-08 74.1 5.6 36 77-112 39-75 (506)
255 PLN02328 lysine-specific histo 97.2 0.00052 1.1E-08 78.6 6.3 37 74-110 235-271 (808)
256 PRK09853 putative selenate red 97.2 0.00043 9.4E-09 80.7 5.5 36 76-111 538-573 (1019)
257 TIGR02731 phytoene_desat phyto 97.2 0.00038 8.3E-09 76.2 4.8 59 79-137 1-71 (453)
258 PRK06912 acoL dihydrolipoamide 97.2 0.0041 9E-08 68.1 12.8 101 77-247 170-271 (458)
259 PRK13748 putative mercuric red 97.2 0.00044 9.5E-09 77.9 5.3 34 76-109 97-130 (561)
260 TIGR01421 gluta_reduc_1 glutat 97.2 0.004 8.7E-08 68.0 12.6 100 77-246 166-267 (450)
261 COG0562 Glf UDP-galactopyranos 97.1 0.00053 1.2E-08 68.1 4.9 34 78-111 2-35 (374)
262 PF13434 K_oxygenase: L-lysine 97.1 0.0059 1.3E-07 63.8 13.0 137 75-242 188-339 (341)
263 PF00732 GMC_oxred_N: GMC oxid 97.1 0.00035 7.6E-09 71.8 3.8 33 78-110 1-34 (296)
264 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00053 1.2E-08 72.6 5.2 49 78-136 1-49 (419)
265 PRK07251 pyridine nucleotide-d 97.1 0.0039 8.4E-08 67.9 12.1 99 77-246 157-255 (438)
266 PRK06467 dihydrolipoamide dehy 97.1 0.0051 1.1E-07 67.6 13.1 99 78-247 175-277 (471)
267 COG1148 HdrA Heterodisulfide r 97.1 0.00051 1.1E-08 71.7 4.7 34 77-110 124-157 (622)
268 PRK07818 dihydrolipoamide dehy 97.1 0.0047 1E-07 67.9 12.7 100 77-246 172-275 (466)
269 TIGR01372 soxA sarcosine oxida 97.1 0.00063 1.4E-08 81.3 6.2 36 76-111 162-197 (985)
270 KOG2311 NAD/FAD-utilizing prot 97.1 0.0027 5.9E-08 66.2 9.7 145 75-243 26-185 (679)
271 PRK12778 putative bifunctional 97.1 0.0007 1.5E-08 78.8 6.3 35 76-110 430-464 (752)
272 PRK12775 putative trifunctiona 97.1 0.00061 1.3E-08 81.1 5.8 35 76-110 429-463 (1006)
273 PRK12810 gltD glutamate syntha 97.1 0.00063 1.4E-08 74.7 5.5 35 76-110 142-176 (471)
274 PRK11749 dihydropyrimidine deh 97.1 0.00069 1.5E-08 74.2 5.7 36 75-110 138-173 (457)
275 PRK12769 putative oxidoreducta 97.1 0.00063 1.4E-08 77.9 5.5 35 76-110 326-360 (654)
276 PLN02487 zeta-carotene desatur 97.1 0.00076 1.7E-08 75.0 6.0 36 76-111 74-109 (569)
277 TIGR02374 nitri_red_nirB nitri 97.1 0.0041 8.9E-08 72.6 12.2 99 78-245 141-239 (785)
278 PRK06115 dihydrolipoamide dehy 97.1 0.0046 1E-07 67.9 12.0 100 77-246 174-278 (466)
279 PRK05329 anaerobic glycerol-3- 97.1 0.00063 1.4E-08 72.9 5.0 34 77-110 2-35 (422)
280 PRK12844 3-ketosteroid-delta-1 97.1 0.0012 2.7E-08 73.9 7.5 35 76-110 5-39 (557)
281 TIGR02053 MerA mercuric reduct 97.0 0.0057 1.2E-07 67.2 12.4 99 78-246 167-268 (463)
282 PRK14989 nitrite reductase sub 97.0 0.0038 8.2E-08 73.0 11.5 40 204-245 75-114 (847)
283 PRK13977 myosin-cross-reactive 97.0 0.001 2.2E-08 72.9 6.2 36 76-111 21-60 (576)
284 PRK06327 dihydrolipoamide dehy 97.0 0.0053 1.1E-07 67.6 11.8 100 77-246 183-286 (475)
285 PRK12837 3-ketosteroid-delta-1 97.0 0.00069 1.5E-08 75.2 4.9 35 76-111 6-40 (513)
286 KOG1335 Dihydrolipoamide dehyd 97.0 0.0047 1E-07 62.8 10.1 35 76-110 38-72 (506)
287 TIGR02732 zeta_caro_desat caro 97.0 0.00073 1.6E-08 74.2 4.8 33 79-111 1-33 (474)
288 PRK06370 mercuric reductase; V 97.0 0.0064 1.4E-07 66.8 12.2 100 77-246 171-273 (463)
289 PRK05976 dihydrolipoamide dehy 97.0 0.0077 1.7E-07 66.3 12.8 34 77-110 180-213 (472)
290 PRK12814 putative NADPH-depend 97.0 0.00097 2.1E-08 76.1 5.8 36 76-111 192-227 (652)
291 PRK07846 mycothione reductase; 96.9 0.0039 8.4E-08 68.1 10.0 31 77-109 1-31 (451)
292 PRK02106 choline dehydrogenase 96.9 0.00093 2E-08 75.1 5.3 36 75-110 3-39 (560)
293 PRK12835 3-ketosteroid-delta-1 96.9 0.0011 2.4E-08 74.6 5.8 36 76-111 10-45 (584)
294 PTZ00052 thioredoxin reductase 96.9 0.007 1.5E-07 66.9 11.7 97 78-245 183-279 (499)
295 PLN02676 polyamine oxidase 96.9 0.0011 2.3E-08 73.0 5.2 57 189-245 223-287 (487)
296 TIGR02462 pyranose_ox pyranose 96.9 0.001 2.2E-08 73.3 5.0 35 78-112 1-35 (544)
297 TIGR03452 mycothione_red mycot 96.9 0.003 6.6E-08 69.0 8.7 31 77-109 2-32 (452)
298 TIGR01318 gltD_gamma_fam gluta 96.9 0.0013 2.7E-08 72.2 5.6 35 76-110 140-174 (467)
299 PRK14989 nitrite reductase sub 96.9 0.0075 1.6E-07 70.6 12.1 100 78-246 146-247 (847)
300 PRK13512 coenzyme A disulfide 96.9 0.008 1.7E-07 65.4 11.7 33 78-110 149-181 (438)
301 COG3634 AhpF Alkyl hydroperoxi 96.9 0.0018 3.9E-08 64.8 5.9 32 75-106 209-240 (520)
302 COG3573 Predicted oxidoreducta 96.8 0.0014 3.1E-08 65.2 5.0 37 75-111 3-39 (552)
303 PRK06292 dihydrolipoamide dehy 96.8 0.013 2.7E-07 64.4 13.1 34 77-110 169-202 (460)
304 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.0093 2E-07 64.7 12.0 97 78-245 138-234 (427)
305 PRK08010 pyridine nucleotide-d 96.8 0.011 2.4E-07 64.4 12.6 98 78-246 159-256 (441)
306 TIGR02374 nitri_red_nirB nitri 96.8 0.0041 9E-08 72.5 9.4 39 204-244 70-108 (785)
307 TIGR01423 trypano_reduc trypan 96.8 0.011 2.4E-07 65.0 12.3 101 77-247 187-291 (486)
308 TIGR01423 trypano_reduc trypan 96.8 0.0012 2.7E-08 72.5 4.8 34 76-109 2-36 (486)
309 PLN02612 phytoene desaturase 96.8 0.0015 3.3E-08 73.2 5.6 36 75-110 91-126 (567)
310 PRK12809 putative oxidoreducta 96.8 0.0018 3.9E-08 73.9 6.0 36 76-111 309-344 (639)
311 PRK12770 putative glutamate sy 96.7 0.0021 4.4E-08 67.9 5.6 35 77-111 18-52 (352)
312 COG1053 SdhA Succinate dehydro 96.7 0.0017 3.7E-08 72.0 5.1 38 75-112 4-41 (562)
313 COG0446 HcaD Uncharacterized N 96.7 0.015 3.1E-07 62.6 12.3 100 77-245 136-238 (415)
314 PRK14694 putative mercuric red 96.7 0.017 3.7E-07 63.4 12.5 98 77-246 178-275 (468)
315 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0023 5E-08 70.4 5.5 35 76-110 142-176 (485)
316 TIGR01438 TGR thioredoxin and 96.7 0.014 3E-07 64.4 11.6 97 78-245 181-280 (484)
317 COG0493 GltD NADPH-dependent g 96.6 0.0025 5.4E-08 68.8 5.3 35 77-111 123-157 (457)
318 PRK12771 putative glutamate sy 96.6 0.0029 6.2E-08 71.3 6.1 36 76-111 136-171 (564)
319 COG1252 Ndh NADH dehydrogenase 96.6 0.011 2.5E-07 62.2 9.9 34 77-110 3-38 (405)
320 COG2907 Predicted NAD/FAD-bind 96.6 0.0019 4.2E-08 64.8 3.7 34 76-110 7-40 (447)
321 PTZ00058 glutathione reductase 96.5 0.025 5.4E-07 63.2 12.8 34 77-110 237-270 (561)
322 COG1206 Gid NAD(FAD)-utilizing 96.5 0.014 3E-07 58.4 9.4 35 77-111 3-37 (439)
323 PRK14727 putative mercuric red 96.5 0.023 5.1E-07 62.6 12.5 98 78-247 189-286 (479)
324 PTZ00153 lipoamide dehydrogena 96.5 0.02 4.3E-07 65.0 11.9 33 78-110 313-345 (659)
325 PRK09564 coenzyme A disulfide 96.5 0.028 6E-07 61.4 12.9 33 77-109 149-181 (444)
326 COG2509 Uncharacterized FAD-de 96.5 0.017 3.7E-07 60.5 10.2 41 204-244 189-230 (486)
327 TIGR02500 type_III_yscD type I 96.5 0.0085 1.8E-07 64.3 8.4 77 541-633 11-88 (410)
328 COG1252 Ndh NADH dehydrogenase 96.5 0.013 2.7E-07 62.0 9.1 39 200-243 222-261 (405)
329 PTZ00318 NADH dehydrogenase-li 96.4 0.027 5.8E-07 61.1 11.8 37 204-244 244-280 (424)
330 KOG2404 Fumarate reductase, fl 96.4 0.015 3.2E-07 58.0 8.5 32 79-110 11-42 (477)
331 KOG0404 Thioredoxin reductase 96.4 0.017 3.6E-07 54.6 8.4 33 77-109 8-40 (322)
332 PRK13748 putative mercuric red 96.4 0.033 7.1E-07 62.8 12.7 98 77-246 270-367 (561)
333 PRK13984 putative oxidoreducta 96.3 0.0052 1.1E-07 69.8 5.6 35 76-110 282-316 (604)
334 COG2303 BetA Choline dehydroge 96.3 0.004 8.6E-08 69.4 4.4 37 74-110 4-40 (542)
335 PLN03000 amine oxidase 96.2 0.0059 1.3E-07 70.3 5.5 36 76-111 183-218 (881)
336 KOG1276 Protoporphyrinogen oxi 96.1 0.0059 1.3E-07 63.2 4.5 35 76-110 10-46 (491)
337 TIGR01810 betA choline dehydro 96.1 0.0047 1E-07 69.0 4.0 32 79-110 1-33 (532)
338 PLN02976 amine oxidase 96.0 0.0074 1.6E-07 72.1 5.2 34 77-110 693-726 (1713)
339 KOG0245 Kinesin-like protein [ 96.0 0.017 3.7E-07 65.4 7.7 76 555-640 478-555 (1221)
340 TIGR03140 AhpF alkyl hydropero 96.0 0.042 9.2E-07 61.1 11.1 33 77-109 352-384 (515)
341 KOG0685 Flavin-containing amin 96.0 0.0092 2E-07 62.8 5.1 34 77-110 21-55 (498)
342 PLN02546 glutathione reductase 96.0 0.068 1.5E-06 59.7 12.3 34 77-110 252-285 (558)
343 PLN02785 Protein HOTHEAD 95.9 0.0094 2E-07 66.9 5.5 35 75-110 53-87 (587)
344 KOG1800 Ferredoxin/adrenodoxin 95.8 0.011 2.3E-07 60.4 4.6 37 77-113 20-58 (468)
345 KOG4716 Thioredoxin reductase 95.7 0.22 4.7E-06 50.3 13.0 36 75-110 17-52 (503)
346 KOG0399 Glutamate synthase [Am 95.7 0.013 2.7E-07 67.1 4.9 36 75-110 1783-1818(2142)
347 COG3486 IucD Lysine/ornithine 95.7 0.039 8.5E-07 57.1 8.1 151 74-248 2-161 (436)
348 KOG0042 Glycerol-3-phosphate d 95.7 0.0063 1.4E-07 64.7 2.4 38 75-112 65-102 (680)
349 KOG1336 Monodehydroascorbate/f 95.5 0.1 2.3E-06 55.2 10.5 100 77-245 213-314 (478)
350 COG1251 NirB NAD(P)H-nitrite r 95.5 0.04 8.7E-07 61.1 7.8 32 78-109 146-177 (793)
351 TIGR01292 TRX_reduct thioredox 95.4 0.14 3E-06 52.3 11.4 33 77-109 141-173 (300)
352 PRK10262 thioredoxin reductase 95.4 0.16 3.4E-06 52.8 11.7 34 77-110 146-179 (321)
353 KOG2293 Daxx-interacting prote 95.2 0.057 1.2E-06 57.2 7.7 80 554-640 448-530 (547)
354 KOG1892 Actin filament-binding 95.2 0.048 1E-06 61.1 7.2 102 525-640 353-454 (1629)
355 PF01210 NAD_Gly3P_dh_N: NAD-d 95.0 0.028 6.2E-07 51.7 4.4 32 79-110 1-32 (157)
356 TIGR01663 PNK-3'Pase polynucle 95.0 0.056 1.2E-06 59.3 7.1 85 530-634 15-101 (526)
357 PF02737 3HCDH_N: 3-hydroxyacy 94.9 0.032 6.9E-07 52.6 4.5 32 79-110 1-32 (180)
358 PRK15317 alkyl hydroperoxide r 94.9 0.17 3.8E-06 56.3 11.0 34 77-110 351-384 (517)
359 KOG2960 Protein involved in th 94.7 0.0081 1.8E-07 56.1 -0.1 35 77-111 76-112 (328)
360 PF03721 UDPG_MGDP_dh_N: UDP-g 94.7 0.033 7.1E-07 52.7 4.0 33 78-110 1-33 (185)
361 KOG1335 Dihydrolipoamide dehyd 94.7 0.15 3.3E-06 52.3 8.6 101 77-247 211-317 (506)
362 KOG3851 Sulfide:quinone oxidor 94.6 0.032 6.9E-07 55.6 3.7 37 75-111 37-75 (446)
363 TIGR03169 Nterm_to_SelD pyridi 94.6 0.32 6.9E-06 51.5 11.6 37 204-244 207-243 (364)
364 PRK12770 putative glutamate sy 94.4 0.28 6.1E-06 51.7 10.7 32 78-109 173-205 (352)
365 COG0569 TrkA K+ transport syst 94.3 0.053 1.2E-06 53.1 4.5 60 78-137 1-63 (225)
366 KOG4254 Phytoene desaturase [C 94.2 0.045 9.7E-07 57.2 3.7 47 204-250 280-327 (561)
367 KOG1346 Programmed cell death 94.0 0.13 2.8E-06 53.2 6.6 43 205-247 410-454 (659)
368 TIGR02730 carot_isom carotene 93.9 1.4 3.1E-05 48.7 15.5 34 78-111 1-34 (493)
369 PF01593 Amino_oxidase: Flavin 93.9 1.1 2.3E-05 48.1 14.2 50 197-247 219-268 (450)
370 PF02558 ApbA: Ketopantoate re 93.8 0.095 2.1E-06 47.7 5.0 31 80-110 1-31 (151)
371 PRK01438 murD UDP-N-acetylmura 93.8 0.08 1.7E-06 58.4 5.2 34 77-110 16-49 (480)
372 PRK02705 murD UDP-N-acetylmura 93.8 0.071 1.5E-06 58.5 4.7 32 79-110 2-33 (459)
373 PRK11749 dihydropyrimidine deh 93.7 0.56 1.2E-05 51.4 11.7 33 77-109 273-306 (457)
374 KOG1238 Glucose dehydrogenase/ 93.7 0.084 1.8E-06 58.1 4.9 39 74-112 54-93 (623)
375 PRK06249 2-dehydropantoate 2-r 93.5 0.11 2.4E-06 53.7 5.5 34 77-110 5-38 (313)
376 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.093 2E-06 54.2 4.5 32 79-110 4-35 (308)
377 PRK07819 3-hydroxybutyryl-CoA 93.0 0.13 2.9E-06 52.4 5.0 34 78-111 6-39 (286)
378 PF00996 GDI: GDP dissociation 93.0 0.11 2.5E-06 55.6 4.6 36 75-110 2-37 (438)
379 TIGR02734 crtI_fam phytoene de 93.0 10 0.00022 42.1 20.4 32 80-111 1-32 (502)
380 PRK07530 3-hydroxybutyryl-CoA 92.8 0.15 3.2E-06 52.3 5.0 34 77-110 4-37 (292)
381 PRK06719 precorrin-2 dehydroge 92.7 0.18 4E-06 46.2 5.0 33 76-108 12-44 (157)
382 PRK08293 3-hydroxybutyryl-CoA 92.7 0.16 3.4E-06 51.9 5.0 33 78-110 4-36 (287)
383 COG1004 Ugd Predicted UDP-gluc 92.6 0.14 3E-06 53.1 4.4 34 78-111 1-34 (414)
384 PRK14106 murD UDP-N-acetylmura 92.4 0.19 4E-06 55.0 5.5 34 77-110 5-38 (450)
385 PRK05708 2-dehydropantoate 2-r 92.4 0.17 3.7E-06 52.1 4.9 32 78-109 3-34 (305)
386 PRK07066 3-hydroxybutyryl-CoA 92.4 0.2 4.4E-06 51.6 5.3 33 78-110 8-40 (321)
387 cd02929 TMADH_HD_FMN Trimethyl 92.3 0.046 9.9E-07 57.8 0.6 48 16-65 322-369 (370)
388 PRK09260 3-hydroxybutyryl-CoA 92.1 0.17 3.6E-06 51.7 4.4 32 79-110 3-34 (288)
389 TIGR03377 glycerol3P_GlpA glyc 92.0 0.59 1.3E-05 52.0 9.0 62 185-246 123-192 (516)
390 PRK12921 2-dehydropantoate 2-r 92.0 0.19 4.2E-06 51.7 4.7 30 79-108 2-31 (305)
391 KOG3923 D-aspartate oxidase [A 92.0 0.15 3.3E-06 50.6 3.5 36 77-112 3-45 (342)
392 TIGR01470 cysG_Nterm siroheme 91.8 0.26 5.7E-06 47.4 5.1 33 77-109 9-41 (205)
393 PRK06035 3-hydroxyacyl-CoA deh 91.8 0.23 4.9E-06 50.9 4.9 33 78-110 4-36 (291)
394 PRK06522 2-dehydropantoate 2-r 91.8 0.22 4.7E-06 51.2 4.8 31 79-109 2-32 (304)
395 PF13241 NAD_binding_7: Putati 91.7 0.16 3.5E-06 42.9 3.1 34 76-109 6-39 (103)
396 TIGR02354 thiF_fam2 thiamine b 91.7 0.27 5.8E-06 47.2 4.9 35 76-110 20-55 (200)
397 PRK07233 hypothetical protein; 91.7 12 0.00027 40.3 18.7 33 79-111 1-33 (434)
398 PF13478 XdhC_C: XdhC Rossmann 91.6 0.2 4.3E-06 44.7 3.7 32 80-111 1-32 (136)
399 PRK05808 3-hydroxybutyryl-CoA 91.5 0.24 5.3E-06 50.4 4.7 33 78-110 4-36 (282)
400 PLN02612 phytoene desaturase 91.4 6.4 0.00014 44.4 16.4 56 192-249 310-370 (567)
401 PRK04148 hypothetical protein; 91.3 0.24 5.1E-06 43.8 3.8 32 78-110 18-49 (134)
402 PRK06718 precorrin-2 dehydroge 91.3 0.32 6.9E-06 46.7 5.1 34 76-109 9-42 (202)
403 PRK11064 wecC UDP-N-acetyl-D-m 91.3 0.25 5.4E-06 53.2 4.7 34 78-111 4-37 (415)
404 PF01262 AlaDh_PNT_C: Alanine 91.2 0.35 7.5E-06 45.0 5.1 34 77-110 20-53 (168)
405 PF00899 ThiF: ThiF family; I 91.1 0.32 7E-06 43.3 4.6 35 77-111 2-37 (135)
406 PRK15116 sulfur acceptor prote 90.9 0.36 7.8E-06 48.3 5.1 35 76-110 29-64 (268)
407 cd05292 LDH_2 A subgroup of L- 90.7 0.34 7.3E-06 50.0 4.9 32 79-110 2-35 (308)
408 PRK08229 2-dehydropantoate 2-r 90.6 0.33 7.1E-06 50.9 4.9 32 78-109 3-34 (341)
409 TIGR01372 soxA sarcosine oxida 90.6 1.8 3.9E-05 52.2 11.6 33 77-109 317-350 (985)
410 PRK06130 3-hydroxybutyryl-CoA 90.6 0.37 7.9E-06 49.8 5.1 33 78-110 5-37 (311)
411 PF02254 TrkA_N: TrkA-N domain 90.4 0.43 9.3E-06 41.1 4.6 32 80-111 1-32 (116)
412 PF01488 Shikimate_DH: Shikima 90.3 0.54 1.2E-05 41.9 5.3 35 76-110 11-46 (135)
413 KOG2495 NADH-dehydrogenase (ub 90.3 1.3 2.9E-05 46.4 8.6 37 205-243 290-328 (491)
414 PLN02545 3-hydroxybutyryl-CoA 90.3 0.39 8.5E-06 49.2 5.0 33 78-110 5-37 (295)
415 PRK12810 gltD glutamate syntha 90.2 1.7 3.7E-05 47.7 10.2 33 77-109 281-314 (471)
416 cd01080 NAD_bind_m-THF_DH_Cycl 90.0 0.51 1.1E-05 43.8 5.0 35 75-109 42-77 (168)
417 PF00056 Ldh_1_N: lactate/mala 90.0 0.59 1.3E-05 42.1 5.2 33 78-110 1-36 (141)
418 KOG1336 Monodehydroascorbate/f 89.9 1 2.2E-05 47.9 7.6 39 205-246 144-182 (478)
419 PRK14620 NAD(P)H-dependent gly 89.8 0.43 9.3E-06 49.7 4.9 32 79-110 2-33 (326)
420 TIGR01763 MalateDH_bact malate 89.8 0.44 9.6E-06 49.0 4.9 32 78-109 2-34 (305)
421 TIGR03026 NDP-sugDHase nucleot 89.6 0.36 7.8E-06 52.0 4.3 33 79-111 2-34 (411)
422 PRK14618 NAD(P)H-dependent gly 89.5 0.53 1.2E-05 49.0 5.3 33 78-110 5-37 (328)
423 PTZ00082 L-lactate dehydrogena 89.5 0.62 1.3E-05 48.2 5.7 36 76-111 5-41 (321)
424 cd00401 AdoHcyase S-adenosyl-L 89.4 0.47 1E-05 50.6 4.8 34 77-110 202-235 (413)
425 PRK12475 thiamine/molybdopteri 89.4 0.51 1.1E-05 49.2 5.0 34 77-110 24-58 (338)
426 PF13738 Pyr_redox_3: Pyridine 89.4 0.45 9.7E-06 45.5 4.4 35 76-110 166-200 (203)
427 PRK14619 NAD(P)H-dependent gly 89.3 0.58 1.2E-05 48.3 5.3 34 77-110 4-37 (308)
428 TIGR03143 AhpF_homolog putativ 89.3 0.42 9.2E-06 53.7 4.6 34 77-110 143-176 (555)
429 PF00743 FMO-like: Flavin-bind 89.3 0.67 1.5E-05 51.5 6.1 36 75-110 181-216 (531)
430 TIGR01316 gltA glutamate synth 89.2 0.47 1E-05 51.8 4.8 34 77-110 272-305 (449)
431 TIGR00518 alaDH alanine dehydr 89.2 0.53 1.2E-05 49.8 5.1 34 77-110 167-200 (370)
432 PRK09424 pntA NAD(P) transhydr 89.0 0.47 1E-05 52.0 4.5 34 77-110 165-198 (509)
433 PRK00066 ldh L-lactate dehydro 88.9 0.72 1.6E-05 47.6 5.7 35 76-110 5-41 (315)
434 PRK07417 arogenate dehydrogena 88.8 0.54 1.2E-05 47.7 4.6 32 79-110 2-33 (279)
435 TIGR02964 xanthine_xdhC xanthi 88.7 0.65 1.4E-05 46.1 4.9 36 76-111 99-134 (246)
436 TIGR02356 adenyl_thiF thiazole 88.7 0.68 1.5E-05 44.5 5.0 35 76-110 20-55 (202)
437 PRK12831 putative oxidoreducta 88.5 0.55 1.2E-05 51.5 4.7 34 77-110 281-314 (464)
438 cd01487 E1_ThiF_like E1_ThiF_l 88.4 0.7 1.5E-05 43.2 4.7 32 79-110 1-33 (174)
439 KOG0241 Kinesin-like protein [ 88.3 1.1 2.4E-05 50.8 6.8 97 525-637 441-538 (1714)
440 PRK07688 thiamine/molybdopteri 88.2 0.71 1.5E-05 48.2 5.1 34 77-110 24-58 (339)
441 PRK00094 gpsA NAD(P)H-dependen 88.1 0.68 1.5E-05 48.1 4.9 32 79-110 3-34 (325)
442 cd01483 E1_enzyme_family Super 88.1 0.8 1.7E-05 41.2 4.8 32 79-110 1-33 (143)
443 KOG2304 3-hydroxyacyl-CoA dehy 88.1 0.57 1.2E-05 44.6 3.8 36 76-111 10-45 (298)
444 TIGR02733 desat_CrtD C-3',4' d 88.0 21 0.00046 39.4 17.0 56 190-245 232-295 (492)
445 PF03446 NAD_binding_2: NAD bi 87.8 0.76 1.7E-05 42.4 4.5 33 78-110 2-34 (163)
446 PRK07531 bifunctional 3-hydrox 87.7 0.72 1.6E-05 51.0 5.0 33 78-110 5-37 (495)
447 TIGR02355 moeB molybdopterin s 87.6 0.84 1.8E-05 45.1 5.0 34 77-110 24-58 (240)
448 TIGR01915 npdG NADPH-dependent 87.5 0.81 1.8E-05 44.6 4.8 32 79-110 2-34 (219)
449 TIGR03862 flavo_PP4765 unchara 87.5 0.75 1.6E-05 48.6 4.8 55 188-244 84-141 (376)
450 PRK08268 3-hydroxy-acyl-CoA de 87.4 0.77 1.7E-05 50.8 5.0 34 78-111 8-41 (507)
451 TIGR03467 HpnE squalene-associ 87.4 12 0.00026 40.1 14.3 41 204-244 213-254 (419)
452 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.3 0.65 1.4E-05 51.2 4.4 34 78-111 6-39 (503)
453 PRK06223 malate dehydrogenase; 87.3 0.85 1.8E-05 47.0 5.1 33 78-110 3-36 (307)
454 PRK08644 thiamine biosynthesis 87.3 0.92 2E-05 43.9 4.9 35 76-110 27-62 (212)
455 PF10727 Rossmann-like: Rossma 87.2 0.41 8.8E-06 42.1 2.2 35 75-109 8-42 (127)
456 cd05291 HicDH_like L-2-hydroxy 87.1 0.84 1.8E-05 47.0 4.9 32 79-110 2-35 (306)
457 PLN02353 probable UDP-glucose 87.0 0.78 1.7E-05 50.1 4.7 34 78-111 2-37 (473)
458 cd01075 NAD_bind_Leu_Phe_Val_D 87.0 1.1 2.4E-05 42.9 5.3 34 76-109 27-60 (200)
459 PRK05690 molybdopterin biosynt 86.9 0.97 2.1E-05 44.9 5.0 34 77-110 32-66 (245)
460 COG1748 LYS9 Saccharopine dehy 86.8 0.87 1.9E-05 47.9 4.8 34 78-111 2-36 (389)
461 PRK07502 cyclohexadienyl dehyd 86.8 0.97 2.1E-05 46.6 5.2 33 78-110 7-41 (307)
462 PRK15057 UDP-glucose 6-dehydro 86.8 0.79 1.7E-05 48.8 4.6 32 79-111 2-33 (388)
463 cd00757 ThiF_MoeB_HesA_family 86.5 1 2.3E-05 44.1 4.9 34 77-110 21-55 (228)
464 TIGR00936 ahcY adenosylhomocys 86.5 1.1 2.3E-05 47.8 5.3 35 76-110 194-228 (406)
465 PRK02472 murD UDP-N-acetylmura 86.0 1.1 2.3E-05 49.0 5.2 34 77-110 5-38 (447)
466 PF01593 Amino_oxidase: Flavin 86.0 0.74 1.6E-05 49.4 4.0 32 363-397 418-449 (450)
467 cd00755 YgdL_like Family of ac 86.0 1.2 2.5E-05 43.8 4.9 34 77-110 11-45 (231)
468 PRK08328 hypothetical protein; 85.9 1.2 2.6E-05 43.8 4.9 34 77-110 27-61 (231)
469 PRK08306 dipicolinate synthase 85.8 1.2 2.6E-05 45.6 5.1 34 77-110 152-185 (296)
470 cd05293 LDH_1 A subgroup of L- 85.8 1.3 2.7E-05 45.8 5.3 34 77-110 3-38 (312)
471 PLN02976 amine oxidase 85.8 53 0.0012 40.9 19.0 49 190-241 936-994 (1713)
472 PRK12549 shikimate 5-dehydroge 85.7 1.2 2.5E-05 45.4 5.0 33 77-109 127-160 (284)
473 PLN02576 protoporphyrinogen ox 85.6 35 0.00077 37.6 17.2 51 191-241 240-294 (496)
474 COG1893 ApbA Ketopantoate redu 85.6 0.98 2.1E-05 46.5 4.4 32 79-110 2-33 (307)
475 PTZ00117 malate dehydrogenase; 85.4 1.3 2.8E-05 45.9 5.2 34 77-110 5-39 (319)
476 PRK01710 murD UDP-N-acetylmura 85.4 1.1 2.3E-05 49.2 4.8 33 78-110 15-47 (458)
477 PRK04308 murD UDP-N-acetylmura 85.3 1.4 2.9E-05 48.2 5.6 34 77-110 5-38 (445)
478 cd01492 Aos1_SUMO Ubiquitin ac 85.3 1.3 2.8E-05 42.4 4.8 34 77-110 21-55 (197)
479 COG5044 MRS6 RAB proteins gera 85.1 1.3 2.9E-05 45.4 4.9 35 77-111 6-40 (434)
480 cd01339 LDH-like_MDH L-lactate 85.1 1.1 2.3E-05 46.1 4.4 31 80-110 1-32 (300)
481 PLN02695 GDP-D-mannose-3',5'-e 85.1 1.7 3.6E-05 46.2 6.0 35 76-110 20-55 (370)
482 PRK11730 fadB multifunctional 85.0 1 2.2E-05 52.1 4.7 34 78-111 314-347 (715)
483 cd01078 NAD_bind_H4MPT_DH NADP 84.9 1.5 3.2E-05 41.8 5.1 33 77-109 28-61 (194)
484 PLN03209 translocon at the inn 84.9 3.3 7.3E-05 46.0 8.3 35 76-110 79-114 (576)
485 cd05311 NAD_bind_2_malic_enz N 84.9 1.3 2.9E-05 43.3 4.7 33 77-109 25-60 (226)
486 PRK10669 putative cation:proto 84.9 1 2.2E-05 50.8 4.4 35 77-111 417-451 (558)
487 TIGR03736 PRTRC_ThiF PRTRC sys 84.8 1.4 3E-05 43.5 4.8 35 76-110 10-55 (244)
488 cd05191 NAD_bind_amino_acid_DH 84.7 2.3 4.9E-05 34.5 5.3 32 77-108 23-55 (86)
489 PRK05476 S-adenosyl-L-homocyst 84.6 1.4 3E-05 47.3 5.1 35 76-110 211-245 (425)
490 TIGR02437 FadB fatty oxidation 84.6 1.1 2.4E-05 51.7 4.7 35 77-111 313-347 (714)
491 PF06100 Strep_67kDa_ant: Stre 84.5 1.1 2.5E-05 48.1 4.3 34 78-111 3-40 (500)
492 cd01485 E1-1_like Ubiquitin ac 84.5 1.5 3.3E-05 41.9 4.8 34 77-110 19-53 (198)
493 TIGR01505 tartro_sem_red 2-hyd 84.4 1.1 2.4E-05 45.8 4.1 32 79-110 1-32 (291)
494 KOG0405 Pyridine nucleotide-di 84.4 1.5 3.2E-05 44.7 4.8 35 75-109 18-52 (478)
495 TIGR00561 pntA NAD(P) transhyd 84.4 1.3 2.9E-05 48.5 4.8 34 77-110 164-197 (511)
496 PRK03369 murD UDP-N-acetylmura 84.3 1.3 2.9E-05 48.8 5.0 32 78-109 13-44 (488)
497 PRK09496 trkA potassium transp 84.3 1.2 2.5E-05 48.8 4.5 33 79-111 2-34 (453)
498 KOG2755 Oxidoreductase [Genera 84.3 0.78 1.7E-05 44.8 2.7 30 80-109 2-33 (334)
499 COG0686 Ald Alanine dehydrogen 84.2 0.89 1.9E-05 45.6 3.1 34 77-110 168-201 (371)
500 TIGR02853 spore_dpaA dipicolin 84.2 1.5 3.3E-05 44.6 5.0 34 77-110 151-184 (287)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.4e-89 Score=751.59 Aligned_cols=638 Identities=71% Similarity=1.188 Sum_probs=531.6
Q ss_pred CcccccccCCCCccce--eeccCCCccccCCcccccccccccCcccccccccCCccccccccccccCCCCCCC----CCC
Q 006440 1 MVSSMFYNSVNLSTAV--FSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNS----DSE 74 (645)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 74 (645)
|++++|+++++++++. ++|+++|.+.......++.++..|+..+......+ .+...++......+.... ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (668)
T PLN02927 1 MGSTLFCYSINPSPSKLDFTRTHVFSPVAKQFYLDLSSFSGKPGGGLSGFRSR--KALLGVKAATALVEKEEKREAVTEK 78 (668)
T ss_pred CCccccccCCCccchhhhccccCCCCcccccchhhhccccccCccccccccch--hhhcchhhhhhhccccccccccccc
Confidence 8999999999999999 99999999999999999999988876322221111 222223333322221111 113
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
.+..+|+||||||+|+++|+.|+++|++|+|+|+++...+..|.+++++.++++++++|+++|+++.+++.+.+......
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999997644444444445688999999999999766788887766543333
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEecc
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 234 (645)
+..+.++..+.+...++...+....+.+..+.|+|..|+++|.+.++...++++++|++++.++++++|++++|+++++|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aD 238 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGD 238 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcC
Confidence 33233433455555554433223345566789999999999999988777888999999999999999999999999999
Q ss_pred EEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCCCC
Q 006440 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVD 314 (645)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (645)
+||+|||++|.+|+.+++.....|.++.+|+++.+..+.+.....+..+.++..+++.++..++.+.|+.+...+.....
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~ 318 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGAD 318 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccc
Confidence 99999999999999997776778999899988876655443444456677888888888887777888777665533323
Q ss_pred CCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHH
Q 006440 315 GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLA 394 (645)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La 394 (645)
......+.+++.|..|++.+.+++.......+..+.++...+..+|..|||+|+|||||+|+|+.|||+|+||+||..|+
T Consensus 319 ~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La 398 (668)
T PLN02927 319 APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLA 398 (668)
T ss_pred cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHH
Confidence 34556788899999999999888877665556677788777777999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCccccee
Q 006440 395 VELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRF 474 (645)
Q Consensus 395 ~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 474 (645)
++|.++++.....+.+.+.+.+|+.|+++|++++..++..+++...++..+..+.+.++.|+.+++.++++.|.++.+|+
T Consensus 399 ~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~ 478 (668)
T PLN02927 399 LELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRF 478 (668)
T ss_pred HHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeee
Confidence 99988764322223345678999999999999999999999999999998877778889999999999999999999999
Q ss_pred eeeccchhhhHhhhcCCCCCCCCCCCceecCcccchHHhhhhccchhhhHhcCCcEEEEecCCCCCCCCCeEeeccCCCC
Q 006440 475 FIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENE 554 (645)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 554 (645)
|++.+||+||+|+.+++..++||++.+|.++|++++.+.+|++++++.|++.+++|+|+|.++.....++++|. ++|+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~ 557 (668)
T PLN02927 479 FVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQ 557 (668)
T ss_pred eeecccHHHhhhhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999 88899
Q ss_pred CEEEcCCCCCCCCcceeeeCCCcccccceEEEEECCEEEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEECCC
Q 006440 555 PYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 634 (645)
Q Consensus 555 ~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~ 634 (645)
+++|||.+.+++++.+|+|+++.||+.||+|.++++.|+|+||+|+||||||+..+++++++|+.+++|++||+|+||++
T Consensus 558 p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 558 PCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSD 637 (668)
T ss_pred CeEecCCCCcCCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999988989999999999999999999999
Q ss_pred ceEEeec
Q 006440 635 KKVMNDS 641 (645)
Q Consensus 635 ~~~~~~~ 641 (645)
++..|+.
T Consensus 638 ~~~~fr~ 644 (668)
T PLN02927 638 KKAAFRV 644 (668)
T ss_pred cceeEEE
Confidence 8888863
No 2
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5.1e-43 Score=372.15 Aligned_cols=364 Identities=17% Similarity=0.169 Sum_probs=245.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||+|+++|+.|++.|++|+|+|+.+..........+++.++++++++|+++ |+|+.+..... ....+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~-~~~~~~- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI--DIWEELEKFVA-EMQDIY- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC--CcHHHHHhhcC-CCcEEE-
Confidence 68999999999999999999999999999987432111111124688999999999999 88988865432 222222
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEcCCcEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 234 (645)
+++. .+.....++. ....++++.++|.+|++.|.+.+.. ..++++++++++.++++++.|++.++ +++||
T Consensus 78 ~~~~-~g~~~~~~~~-----~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ad 150 (374)
T PRK06617 78 VVDN-KASEILDLRN-----DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCN 150 (374)
T ss_pred EEEC-CCceEEEecC-----CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeC
Confidence 2222 2333333332 1123457899999999999987633 35788999999999989999999876 89999
Q ss_pred EEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCe-EEEEEEEeCCCCC
Q 006440 235 LLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGG 312 (645)
Q Consensus 235 lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 312 (645)
+||||||.+|.||+.++. ...+.| + .++...... ........++.|...+. +..+|..++. ..+++... +...
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y-~-~~~~~~v~~-~~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~-~~~~ 225 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY-Q-TALTFNIKH-EKPHENCAMEHFLPLGP-FALLPLKDQYASSVIWSTS-SDQA 225 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC-C-eEEEEEEec-cCCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEeCC-HHHH
Confidence 999999999999998843 334556 3 344433321 11222234555555555 4455776654 33333221 1000
Q ss_pred CCCCcchHHHHHHHHcCCChhHHHHHHcCC-ccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHH
Q 006440 313 VDGPEGKKERLLKIFEGWCDNVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGY 391 (645)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~ 391 (645)
........+.+.+.+..... ..+.... ......+++... ...+|+.+||+|+|||||++||++|||+|+||+||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~ 301 (374)
T PRK06617 226 ALIVNLPVEEVRFLTQRNAG---NSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIE 301 (374)
T ss_pred HHHHcCCHHHHHHHHHHhhc---hhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHH
Confidence 00000011222222211111 1111111 111233444444 567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCccc
Q 006440 392 QLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (645)
Q Consensus 392 ~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (645)
+|+++|.. ..+|++|+++|++++..++.++.. +..+|+++..++..+|+++|..++.++
T Consensus 302 ~La~~L~~--------------~~~L~~Ye~~R~~~~~~~~~~t~~-------l~~~f~~~~~~~~~~R~~~l~~~~~~~ 360 (374)
T PRK06617 302 ILSMIVSN--------------NGTLQEYQKLRQEDNFIMYKLTDE-------LNNIFSNYSKNLRCLRQIGFKVINNFK 360 (374)
T ss_pred HHHHHHcC--------------cchHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhcCH
Confidence 99998831 258999999999999877666543 456678888899999999999999987
Q ss_pred --ceeeeeccchh
Q 006440 472 --GRFFIDLAMPL 482 (645)
Q Consensus 472 --~~~~~~~~~~~ 482 (645)
|+++|+++||.
T Consensus 361 ~~k~~~~~~~~g~ 373 (374)
T PRK06617 361 PIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHHHhcCC
Confidence 58999998863
No 3
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1e-40 Score=355.36 Aligned_cols=355 Identities=30% Similarity=0.446 Sum_probs=255.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+||||||+|+++|+.|+++|++|+|+|+++.... .+ .++.+.+++++.|+.+ |+++.+...+... ..+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~g---~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~-~~~~- 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE-VG---AGIGIGDNVIKKLGNH--DLAKGIKNAGQIL-STMN- 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc-cc---cceeeChHHHHHHHhc--ChHHHHHhcCCcc-ccee-
Confidence 3799999999999999999999999999999865432 22 3688999999999999 7888876654321 1211
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
+.+. .+......+. .. .+..+.++|..|.++|.+.+....++++++|++++.+++++.|++++|+++++|+||
T Consensus 73 ~~~~-~g~~~~~~~~-----~~-~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi 145 (373)
T PRK06753 73 LLDD-KGTLLNKVKL-----KS-NTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI 145 (373)
T ss_pred EEcC-CCCEEeeccc-----cc-CCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence 2221 2222111111 11 123568999999999999887666899999999998888999999999999999999
Q ss_pred EccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCCCCCCc
Q 006440 238 GADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPE 317 (645)
Q Consensus 238 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (645)
+|||.+|.||+.+.......|.+..++.+............... ++..+..++.+|..++...|+..............
T Consensus 146 gadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T PRK06753 146 GADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKE-YWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSS 224 (373)
T ss_pred ECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEE-EEcCCCEEEEEEcCCCeEEEEEEeccccCCccccc
Confidence 99999999999986555556666667766543221111112223 33444456667888888777765542222111222
Q ss_pred chHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHH
Q 006440 318 GKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 397 (645)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 397 (645)
...+.+.+.+..|.+.+.+.+.......+..+.++...+..+|..+|++|||||||.|+|+.|||+|+||+||..|+++|
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 225 FGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred ccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 34567788888998887777765543333344455555667899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCC
Q 006440 398 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (645)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (645)
... +.+++|+.|+++|++++..++..++.+.. ++.....+...+|+..|..
T Consensus 305 ~~~-----------~~~~al~~Y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~r~~~l~~ 355 (373)
T PRK06753 305 NAY-----------DFEKALQRYDKIRVKHTAKVIKRSRKIGK-------IAQIESKLLVALRNRVMKR 355 (373)
T ss_pred hhc-----------cHHHHHHHHHHHhhHHHHHHHHHHHHHhH-------HHhcCCchHHHHHHHHHHh
Confidence 531 35789999999999999998888765433 3334455667788877643
No 4
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-42 Score=367.35 Aligned_cols=378 Identities=17% Similarity=0.201 Sum_probs=244.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCC--cccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+....+. ......++++++++|+++ |+++++...+.....
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~ 79 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL--GVWQDILARRASCYH 79 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc--CCchhhhhhcCcccc
Confidence 3589999999999999999999999999999998654322221 112456899999999999 888888765332222
Q ss_pred ccccccccCCCceeeeccCCCchhhcCCC-eEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEcCCc
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQ 229 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~~g~ 229 (645)
.+. +++... .....++. ...+.+ .++.++|..|++.|.+.+.. ..++++++|++++++++++.+++.+|+
T Consensus 80 ~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~ 153 (400)
T PRK08013 80 GME-VWDKDS-FGRIAFDD----QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS 153 (400)
T ss_pred EEE-EEeCCC-CceEEEcc----cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC
Confidence 222 222211 11122221 112332 36789999999999987633 358899999999998899999999999
Q ss_pred EEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCe-EEEEEEEe
Q 006440 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHK 307 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 307 (645)
+++||+||||||.+|.||+.+. ......|.+... ....... .......+..|.+.+ .+..+|..++. ..|++...
T Consensus 154 ~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~ 230 (400)
T PRK08013 154 MLTARLVVGADGANSWLRNKADIPLTFWDYQHHAL-VATIRTE-EPHDAVARQVFHGDG-ILAFLPLSDPHLCSIVWSLS 230 (400)
T ss_pred EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEE-EEEEecc-CCCCCEEEEEEcCCC-CEEEEECCCCCeEEEEEEcC
Confidence 9999999999999999999983 334455665433 3222211 111222344565555 44455665543 33433321
Q ss_pred CCCCCCCCCcchHHHHHHHHc-CCChhHHHHHHcCCc-cceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 308 EPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
... .........+.+.+.+. .|.+. +..... .....+++... ...+|+.|||+|+|||||.++|++|||+|+
T Consensus 231 ~~~-~~~~~~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ 304 (400)
T PRK08013 231 PEE-AQRMQQAPEEEFNRALAIAFDNR----LGLCELESERQVFPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNL 304 (400)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhHh----hCceEecCCccEEeccee-ecccccCCcEEEEechhhcCCccccCchhh
Confidence 110 00000011122222221 11111 100000 00011222222 357899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccC
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (645)
||+||.+|+++|...+..+ .+.....+|+.|+++|++++..++..++. +..+|....+++..+|++.+.
T Consensus 305 gi~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~R~~~l~ 373 (400)
T PRK08013 305 GFMDAAELIAELRRLHRQG----KDIGQHLYLRRYERSRKHSAALMLAGMQG-------FRDLFAGNNPAKKLLRDIGLK 373 (400)
T ss_pred hHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 9999999999998765432 11223468999999999999876655443 344566667778899999988
Q ss_pred CCCccc--ceeeeeccch
Q 006440 466 HPGRVG--GRFFIDLAMP 481 (645)
Q Consensus 466 ~~~~~~--~~~~~~~~~~ 481 (645)
+++.++ +++++++++|
T Consensus 374 ~~~~~~~~~~~~~~~~~g 391 (400)
T PRK08013 374 LADTLPGVKPQLIRQAMG 391 (400)
T ss_pred HHhhCHHHHHHHHHHHcc
Confidence 877765 4777777776
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.2e-41 Score=362.78 Aligned_cols=365 Identities=24% Similarity=0.260 Sum_probs=240.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
.+||+||||||+|+++|+.|+++|++|+|+|+.+......+ +++.++++++++|+++ |+.+.+...+........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~---r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSPNALRALERL--GLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc---eeeeecHhHHHHHHHc--CChhhhhhccCCceeeEE
Confidence 47999999999999999999999999999999833333333 4789999999999999 665777665543322221
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEc-CCcEEe
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE-NGQCYA 232 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~-~g~~i~ 232 (645)
+.++.. ....++... ..+.+.+++++|..|.+.|.+++.. ..++++++|+.++.+++.+.++++ ||++++
T Consensus 77 -~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 77 -VDDGGR--RLLIFDAAE---LGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred -EecCCc--eeEEecccc---cCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 222211 233343221 1225567899999999999998732 468999999999999999999999 999999
Q ss_pred ccEEEEccCCchhhhhhhc-CCCCC-cccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 233 GDLLIGADGIWSKVRKNLF-GPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
|||||||||.+|.||+.+. ..... .|.+..... .... ..+.....+..|...+ .+..+|.++.....++......
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ 227 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVA-NVEP-EEPHEGRAGERFTHAG-PFALLPLPDNRSSVVWSLPPGP 227 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCceEEEE-Eeec-CCCCCCeEEEEecCCC-ceEEEecCCCceeEEEECChhh
Confidence 9999999999999999996 33333 565533222 2211 1133333444444444 4445566533332222222111
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
.... .....+.+...+....+.... +....................+|..+|++|+|||||+|||++|||+|+||+||
T Consensus 228 ~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da 305 (387)
T COG0654 228 AEDL-QGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDA 305 (387)
T ss_pred HHHH-hcCCHHHHHHHHHHhcCcccc-cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhH
Confidence 1000 111112221111111111100 11111000011111112345678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCcc
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (645)
.+|+++|.+....+ .+ ..+|+.|+++|++++..++.++.. +...|.....+.+.+|+..+.+.+..
T Consensus 306 ~~La~~L~~~~~~~------~~-~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~l~~~~~~ 371 (387)
T COG0654 306 AALAEALAAAPRPG------AD-AAALAAYEARRRPRAEAIQKLSRA-------LGRLFSADGPFARFLRNLGLRLLDRL 371 (387)
T ss_pred HHHHHHHHHHhhcC------cc-HHHHHHHHHhhhhHHHHHHHHHHH-------HhhhhccCCcHHHHHHHHHHHhhccC
Confidence 99999999986531 11 799999999999999988777652 44567788888999999998777655
Q ss_pred c
Q 006440 471 G 471 (645)
Q Consensus 471 ~ 471 (645)
+
T Consensus 372 ~ 372 (387)
T COG0654 372 P 372 (387)
T ss_pred c
Confidence 3
No 6
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.1e-41 Score=361.28 Aligned_cols=369 Identities=18% Similarity=0.212 Sum_probs=241.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccc-cCCCCc-ccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQY-RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~-~~~g~~-~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
.+||+||||||+|+++|+.|+++|++|+|+|+.+... ...+.. .+.+.++++++++|++| |+++.+..........
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL--GAWSSIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC--CCchhhhHhhCCccce
Confidence 4799999999999999999999999999999874321 112111 12467999999999999 8888886532222222
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
+. .++.... ...+.... ......++++.+..|+..|.+++ +...++++++|++++.++++++|++++|+++
T Consensus 81 ~~-~~~~~~~--~~~~~~~~---~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (384)
T PRK08849 81 LE-TWEHPEC--RTRFHSDE---LNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEI 154 (384)
T ss_pred EE-EEeCCCc--eEEecccc---cCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEE
Confidence 22 1111111 12222110 00122457788888999998775 2345888999999999999999999999999
Q ss_pred eccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+||+||+|||.+|.||+.++ +...+.|.+......+. . ........+..+...+...+ .|..++...++++.....
T Consensus 155 ~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~~g~~~~-~pl~~~~~~~~~~~~~~~ 231 (384)
T PRK08849 155 EAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVE-T-EQPQQDITWQQFTPSGPRSF-LPLCGNQGSLVWYDSPKR 231 (384)
T ss_pred EeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEE-c-CCCCCCEEEEEeCCCCCEEE-eEcCCCceEEEEECCHHH
Confidence 99999999999999999983 44556676643333221 1 11122234555544444333 355444332222211100
Q ss_pred C---CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccc--cCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 311 G---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 311 ~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
. .....+...+.+.+.|..+... .. ...+..+ ......+|+.||++|+|||||.|+|++|||+|+
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~---~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~ 301 (384)
T PRK08849 232 IKQLSAMNPEQLRSEILRHFPAELGE-------IK---VLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNL 301 (384)
T ss_pred HHHHHcCCHHHHHHHHHHHhhhhhCc-------EE---eccceEeeccccccchhccCCEEEEEcccccCCCCccchHhH
Confidence 0 0001111222233333222111 11 1122222 233567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccC
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (645)
||+||.+|+++|... ..+.+++|+.|+++|++++..++..++. +..+|+....++..+|+.+|.
T Consensus 302 al~Da~~L~~~l~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~ 365 (384)
T PRK08849 302 GFKDVDVLLAETEKQ---------GVLNDASFARYERRRRPDNLLMQTGMDL-------FYKTFSNSLTPLKFVRNAALK 365 (384)
T ss_pred HHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHH
Confidence 999999999988642 1234789999999999999866554433 445677777889999999999
Q ss_pred CCCccc--ceeeeeccchh
Q 006440 466 HPGRVG--GRFFIDLAMPL 482 (645)
Q Consensus 466 ~~~~~~--~~~~~~~~~~~ 482 (645)
..+.++ |+.+++++||+
T Consensus 366 ~~~~~~~~k~~~~~~~~g~ 384 (384)
T PRK08849 366 LAENSGPLKTQVLKYALGM 384 (384)
T ss_pred HHhccHHHHHHHHHHHcCC
Confidence 999887 48888888763
No 7
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=7.5e-40 Score=351.23 Aligned_cols=357 Identities=25% Similarity=0.351 Sum_probs=249.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+||||||+|+++|+.|+++|++|+|+|+.+... ..| .++.+.++++++|+++ |+++++...+... ..+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~-~~g---~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~-~~~~- 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS-EVG---AGLQLAPNAMRHLERL--GVADRLSGTGVTP-KALY- 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC-cCC---ccceeChhHHHHHHHC--CChHHHhhcccCc-ceEE-
Confidence 579999999999999999999999999999975432 222 3688999999999999 7888887655432 2221
Q ss_pred ccccCCCceeeeccCCCch-hhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEc---CCcE
Q 006440 158 LVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE---NGQC 230 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~ 230 (645)
+.++.........+..... ...+.++ ..++|..|++.|.+.+. ...++++++|++++.+++++.+++. ++++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~ 153 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPY-IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET 153 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCc-eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE
Confidence 2332222211111111000 1112232 47899999999999873 2358899999999988888888873 3457
Q ss_pred EeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccC--CCCc-----cccceEEEecCceEEEEeecCCCeEEEE
Q 006440 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFV--PADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (645)
+++|+||||||.+|.||+.+. .....|.+..+|.+..... +... +......|.+++..++.+|..++...++
T Consensus 154 ~~adlvIgADG~~S~vR~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAG-FSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNF 232 (400)
T ss_pred EecCEEEECCCccHhHHhhcC-CCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEE
Confidence 999999999999999999983 3556787777877764321 1111 1122345667778888888887765544
Q ss_pred EEEeCCCC--CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcc
Q 006440 304 AFHKEPAG--GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (645)
Q Consensus 304 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~Gq 381 (645)
+....+.. .........+.+.+.+..|.+.+.+.+..... ...++++...+...|..||++|||||||+++|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~Gq 310 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDE--WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQ 310 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCc--eeECcCcccCCCcceecCCEEEEecccccCCchhhh
Confidence 43322211 11112234578888999999988888766543 234556555444455689999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhh
Q 006440 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTK 461 (645)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~ 461 (645)
|+|+||+||..|+++|.. .+...+|+.|++.|++++..++..+++.. .+.....+....|+
T Consensus 311 G~n~aieDa~~La~~L~~-----------~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~--------~~~~~~~~~~~~r~ 371 (400)
T PRK06475 311 GAAMAIEDAAALAEALDS-----------DDQSAGLKRFDSVRKERIAAVAKRGQLNR--------FAYHATGIFALGRN 371 (400)
T ss_pred hHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCHHHHHHH
Confidence 999999999999999953 13468999999999999998887765321 22223456677777
Q ss_pred cccC
Q 006440 462 FRIP 465 (645)
Q Consensus 462 ~~l~ 465 (645)
..+.
T Consensus 372 ~~~~ 375 (400)
T PRK06475 372 MLFA 375 (400)
T ss_pred HHHh
Confidence 6653
No 8
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=354.35 Aligned_cols=364 Identities=21% Similarity=0.282 Sum_probs=245.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.||+||||||+|+++|+.|+++|++|+|+|+.+... ..+ ..+.+.++++++|+++ |+++++...+... ..+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g---~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~-~~~~- 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TGG---YMVDFWGVGYEVAKRM--GITDQLREAGYQI-EHVR- 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CCC---eEEeccCcHHHHHHHc--CCHHHHHhccCCc-cceE-
Confidence 479999999999999999999999999999985432 222 2577889999999999 7888887655322 2221
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+++. .+.....++........+.+ .+.+.|..|.+.|.+.+.. ..++++++|++++.++++++|++++|+++++|+|
T Consensus 73 ~~~~-~g~~~~~~~~~~~~~~~g~~-~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~v 150 (391)
T PRK07588 73 SVDP-TGRRKADLNVDSFRRMVGDD-FTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLV 150 (391)
T ss_pred EEcC-CCCEEEEecHHHccccCCCc-eEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEE
Confidence 2221 23322223211111112223 2579999999999887654 4689999999999999999999999999999999
Q ss_pred EEccCCchhhhhhhcCCCC--CcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCCC-
Q 006440 237 IGADGIWSKVRKNLFGPQE--AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV- 313 (645)
Q Consensus 237 VgADG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (645)
|||||.+|.||+.+++... ..|.+...+........ ......+..|.+++..+..+|..++...|++....+....
T Consensus 151 IgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK07588 151 IGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYR-PRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPP 229 (391)
T ss_pred EECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCC-CCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcccc
Confidence 9999999999998743322 23444333222221111 1122334556667777777888777665554443322111
Q ss_pred CCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHH
Q 006440 314 DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 393 (645)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~L 393 (645)
...+...+.+.+.+..|.......+..........+.........+|..||++|+|||||.|+|+.|||+|+||+||..|
T Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~L 309 (391)
T PRK07588 230 LTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVL 309 (391)
T ss_pred CCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHH
Confidence 12233456677777776544333332222111111111122345689999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCC
Q 006440 394 AVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (645)
Q Consensus 394 a~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (645)
+++|.... .+...+|+.|++.|++++..++..++. ...+|+...++...+|+..+...+
T Consensus 310 a~~L~~~~---------~~~~~al~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 310 AGELARAG---------GDHRRAFDAYEKRLRPFIAGKQAAAAK-------FLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHhcc---------CCHHHHHHHHHHHHHHHHHHHHhhccc-------ccccccCCCHHHHHHHHHHHHHhc
Confidence 99997521 135789999999999999988776653 334455666677888998887665
No 9
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=6.7e-41 Score=360.12 Aligned_cols=377 Identities=17% Similarity=0.189 Sum_probs=244.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc-CCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+...... .......+..++++++++|++| |+++++.+........
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL--GAWQGIEARRAAPYIA 80 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC--CchhhhhhhhCCcccE
Confidence 468999999999999999999999999999998632111 1100122467999999999999 8999987643222222
Q ss_pred cccccccCCCceeeeccCCCchhhcCC-CeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCCcE
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQC 230 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (645)
+. +++... .....++. ...+. ++++.+++..|++.|.+.+. ...++++++|++++.+++.+.|++++|++
T Consensus 81 ~~-~~~~~~-~~~~~~~~----~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~ 154 (405)
T PRK08850 81 ME-VWEQDS-FARIEFDA----ESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQA 154 (405)
T ss_pred EE-EEeCCC-CceEEEec----cccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCE
Confidence 22 222221 11222221 11122 35788999999999988763 23588899999999988899999999999
Q ss_pred EeccEEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCC-eEEEEEEEeC
Q 006440 231 YAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKE 308 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 308 (645)
++||+||+|||.+|.||+.+.. .....|.+ .++.+..... .......++.| ++...+..+|..++ .+.|++....
T Consensus 155 ~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~~~-~~~g~~~~lp~~~~~~~~~~w~~~~ 231 (405)
T PRK08850 155 LTAKLVVGADGANSWLRRQMDIPLTHWDYGH-SALVANVRTV-DPHNSVARQIF-TPQGPLAFLPMSEPNMSSIVWSTEP 231 (405)
T ss_pred EEeCEEEEeCCCCChhHHHcCCCeeEEeecc-EEEEEEEEcc-CCCCCEEEEEE-cCCCceEEEECCCCCeEEEEEECCH
Confidence 9999999999999999999843 33455644 4454443321 11222233444 44444555566654 3344433221
Q ss_pred CCCC---CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
.... ....+...+.+.+.+... + ..+.... ....+++.. ....+|.++||+|+|||||.++|++|||+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~~~--~~~~~pl~~-~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ 304 (405)
T PRK08850 232 LRAEALLAMSDEQFNKALTAEFDNR---L-GLCEVVG--ERQAFPLKM-RYARDFVRERVALVGDAAHTIHPLAGQGVNL 304 (405)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhh---h-CcEEEcc--cccEEecce-eeccccccCcEEEEEhhhhcCCccccccHHH
Confidence 1000 000001111122222110 0 0000000 001122221 2356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccC
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (645)
||+||.+|+++|......+ .+.....+|+.|+++|++++..++.+++. +..+|....+++..+|++.+.
T Consensus 305 ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~R~~~l~ 373 (405)
T PRK08850 305 GLLDAASLAQEILALWQQG----RDIGLKRNLRGYERWRKAEAAKMIAAMQG-------FRDLFSGSNPAKKLVRGIGMS 373 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHH
Confidence 9999999999999876432 12234689999999999999977766643 345566677788999999998
Q ss_pred CCCccc--ceeeeeccch
Q 006440 466 HPGRVG--GRFFIDLAMP 481 (645)
Q Consensus 466 ~~~~~~--~~~~~~~~~~ 481 (645)
..+.++ ++++++++++
T Consensus 374 ~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 374 LAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHhhCHHHHHHHHHHHhC
Confidence 888876 3677777765
No 10
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=8e-41 Score=358.24 Aligned_cols=380 Identities=18% Similarity=0.171 Sum_probs=251.0
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCC-CCcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGE-GQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~-g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
+...+||+||||||+|+++|+.|+++|++|+|+|+.+.+.... +.....+.++++++++|+++ |+++.+.+......
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~ 80 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL--GVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC--CchhhhhHhhCCcc
Confidence 3456899999999999999999999999999999976432111 11112467899999999999 88988875432222
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcE
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQC 230 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 230 (645)
..+. +++... .....++... ....+.++.++|..|.+.|.+.+.. ..++++++|++++.++++++|++++|++
T Consensus 81 ~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~ 155 (392)
T PRK08773 81 RRMR-VWDAGG-GGELGFDADT---LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRR 155 (392)
T ss_pred cEEE-EEeCCC-CceEEechhc---cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCE
Confidence 2221 222211 1122232111 1122356889999999999887632 3588899999999988899999998989
Q ss_pred EeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCC
Q 006440 231 YAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 309 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (645)
+++|+||+|||.+|.+|+.+. ......|.+... ....... .+.....++.|...+. +..+|..++...|++..+..
T Consensus 156 ~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~~~~~g~-~~~lP~~~~~~~~~w~~~~~ 232 (392)
T PRK08773 156 LEAALAIAADGAASTLRELAGLPVSRHDYAQRGV-VAFVDTE-HPHQATAWQRFLPTGP-LALLPFADGRSSIVWTLPDA 232 (392)
T ss_pred EEeCEEEEecCCCchHHHhhcCCceEEEeccEEE-EEEEEcc-CCCCCEEEEEeCCCCc-EEEEECCCCceEEEEECCHH
Confidence 999999999999999999873 222344554322 2222111 1112233445554444 44556666665554433211
Q ss_pred CCC---CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHH
Q 006440 310 AGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (645)
Q Consensus 310 ~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~a 386 (645)
... ........+++.+.|..+...+. .... ...+++. .....+|..+|++|+|||||.++|++|||+|+|
T Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~l~-~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~a 305 (392)
T PRK08773 233 EAERVLALDEAAFSRELTQAFAARLGEVR----VASP--RTAFPLR-RQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLG 305 (392)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhhhcCeE----ecCC--ccEeech-hhhhhhhcCCcEEEEechhhcCCCchhchhhhh
Confidence 100 00011112233333333322110 0110 1122332 234578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCC
Q 006440 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (645)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (645)
|+||..|+++|.+.+..+. +.....+|++|+++|++++.. +...++ .+..+|+++.+++..+|+++|.+
T Consensus 306 l~Da~~La~~L~~~~~~~~----~~~~~~~l~~y~~~R~~~~~~------~~~~~~-~l~~~f~~~~~~~~~~r~~~l~~ 374 (392)
T PRK08773 306 LRDVAALQQLVRQAHARRA----DWAAPHRLQRWARTRRSDNTV------AAYGFD-AINRVFSNDEMHLTLLRGSVLGL 374 (392)
T ss_pred HHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999998765421 223468999999999999863 233333 36678899999999999999999
Q ss_pred CCccc--ceeeeeccch
Q 006440 467 PGRVG--GRFFIDLAMP 481 (645)
Q Consensus 467 ~~~~~--~~~~~~~~~~ 481 (645)
.+.++ |++++++++|
T Consensus 375 ~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 375 AGKLPPLVDALWKRASG 391 (392)
T ss_pred HhhCHHHHHHHHHHHcC
Confidence 98887 5888888876
No 11
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3e-40 Score=357.59 Aligned_cols=372 Identities=21% Similarity=0.264 Sum_probs=244.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHH----CCCeEEEEeccCccccC-------CC-CcccceeeCchHHHHHHhcChhHHHHHH
Q 006440 78 LRILVAGGGIGGLVFALAAKR----KGFEVLVFEKDMSAIRG-------EG-QYRGPIQIQSNALAALEAIDLDVAEEVM 145 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~----~g~~~~~~~~~~~~~~~-------~g-~~~~~~~l~~~~~~~l~~l~~g~~~~~~ 145 (645)
+||+||||||+|+++|+.|++ +|++|+|+|+.+.+... .+ ...+++.++++++++|+.+ |+++++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--G~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--GAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc--Cchhhhh
Confidence 689999999999999999999 89999999995432211 11 1124688999999999999 8999987
Q ss_pred HhccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC-----CceEEcCceEEEEEe----
Q 006440 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-----DEIILNESNVIDFKD---- 216 (645)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-----~~~i~~~~~v~~i~~---- 216 (645)
.........+. ++++. +.....++.. ....+.+++++|..|++.|.+.+. +..++++++|++++.
T Consensus 79 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 79 SDRIQPFGRMQ-VWDGC-SLALIRFDRD----NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhcCCceeeEE-EecCC-CCceEEeecC----CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 65432222222 23332 2223344321 112355789999999999988752 235889999999974
Q ss_pred ---eCCeEEEEEcCCcEEeccEEEEccCCchhhhhhh-cCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEE
Q 006440 217 ---HGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 292 (645)
Q Consensus 217 ---~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (645)
++++++|++.+|++++||+||||||++|.||+.+ +......|.+...+..+ ...........++.|...+. +..
T Consensus 153 ~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v-~~~~~~~~~~~~~~f~~~g~-~~~ 230 (437)
T TIGR01989 153 PNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATL-KLEEATENDVAWQRFLPTGP-IAL 230 (437)
T ss_pred ccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEE-EcccCCCCCeEEEEECCCCC-EEE
Confidence 2567899999999999999999999999999998 34456678775433322 22111223344566665554 445
Q ss_pred eecCCCeEEEEEEEeCCCCC---CCCCcchHHHHHHHHc----CCCh-----h-HHH--------------------HHH
Q 006440 293 SDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFE----GWCD-----N-VVD--------------------LIL 339 (645)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~-----~-~~~--------------------~l~ 339 (645)
.|..++...|++........ ....+...+.+...+. .|.. . ..+ .+.
T Consensus 231 lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T TIGR01989 231 LPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVI 310 (437)
T ss_pred eECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhh
Confidence 57777666665543211000 0001111222222220 0000 0 000 000
Q ss_pred cCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 006440 340 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 419 (645)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 419 (645)
.........+++ ......+|..+|++|+|||||.+||++|||+|+||+||.+|+++|.+..+.+ .+.....+|+.
T Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----~~~~~~~~L~~ 385 (437)
T TIGR01989 311 GVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVG----ADIGSISSLKP 385 (437)
T ss_pred eeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcC----CChhHHHHHHH
Confidence 000000011122 2234568999999999999999999999999999999999999999876542 22233579999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCccc
Q 006440 420 YERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (645)
Q Consensus 420 Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (645)
|+++|++++..++.+++. +..+|.....++..+|+++|.+++.++
T Consensus 386 Y~~~R~~~~~~v~~~t~~-------l~~l~~~~~~~~~~~R~~~l~~~~~~~ 430 (437)
T TIGR01989 386 YERERYAKNVVLLGLVDK-------LHKLYATDFPPVVALRTFGLNLTNYIG 430 (437)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHcCCccHHHHHHHHHHHHhhhCH
Confidence 999999999877666543 445677888889999999998887765
No 12
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=8.6e-41 Score=359.57 Aligned_cols=377 Identities=18% Similarity=0.252 Sum_probs=244.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc----CCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR----GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~----~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.... .......+..++++++++|+++ |+++.+........
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL--GAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC--ChhhhhhHhhCccc
Confidence 47999999999999999999999999999999752110 0000112456899999999999 88988865432222
Q ss_pred cccccccccCCCceeeeccCCCchhhcC-CCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCc
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 229 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~ 229 (645)
..+. +++.. +.....++.. ..+ ...++.++|..|.+.|.+.+.. ..+++++++++++++++++.|++.+|+
T Consensus 80 ~~~~-~~~~~-~~~~~~~~~~----~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 153 (405)
T PRK05714 80 SEMQ-VWDGS-GTGQIHFSAA----SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR 153 (405)
T ss_pred eeEE-EEcCC-CCceEEeccc----ccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence 2222 23322 2222333311 111 1236789999999999887643 358889999999999899999999998
Q ss_pred EEeccEEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCe-EEEE-EEE
Q 006440 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWY-AFH 306 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~ 306 (645)
+++||+||+|||.+|.||+.++. .....|.+...+..+ .. +.......+..+...+ .+..+|...+. ..|. +..
T Consensus 154 ~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g-~~~~~P~~~~~~~~~~~~~~ 230 (405)
T PRK05714 154 QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSV-RC-SEPHRATAWQRFTDDG-PLAFLPLERDGDEHWCSIVW 230 (405)
T ss_pred EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEE-Ec-CCCCCCEEEEEcCCCC-CeEEeeCCCCCCCCeEEEEE
Confidence 99999999999999999999843 233445543322222 11 1122223344444434 55556664321 1221 111
Q ss_pred eCCCCC-C----CCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcc
Q 006440 307 KEPAGG-V----DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (645)
Q Consensus 307 ~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~Gq 381 (645)
..+... . ...+...+.+.+.|.. .+.+.+. .. ....+++... ...+|..+||+|+|||||+|+|++||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-~~--~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQ 303 (405)
T PRK05714 231 STTPEEAERLMALDDDAFCAALERAFEG---RLGEVLS-AD--PRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQ 303 (405)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHH---HhCCcee-cC--CccEEeccee-ehhhhccCCEEEEEeccccCCCcccc
Confidence 111100 0 0000111222222221 1111111 11 1122344433 46789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhh
Q 006440 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTK 461 (645)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~ 461 (645)
|+|+||+||.+|+++|..+...+ .+.....+|+.|+++|++++..++.+++. +..+|.++..++..+|+
T Consensus 304 G~n~al~DA~~La~~L~~~~~~g----~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~ 372 (405)
T PRK05714 304 GVNLGFLDAAVLAEVLLHAAERG----ERLADVRVLSRFERRRMPHNLALMAAMEG-------FERLFQADPLPLRWLRN 372 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCchHHHHHHH
Confidence 99999999999999998765321 11233589999999999999987766654 44567778888999999
Q ss_pred cccCCCCccc--ceeeeeccchh
Q 006440 462 FRIPHPGRVG--GRFFIDLAMPL 482 (645)
Q Consensus 462 ~~l~~~~~~~--~~~~~~~~~~~ 482 (645)
..|...+.++ |++++++++|.
T Consensus 373 ~~l~~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 373 TGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHHHHHhhCHHHHHHHHHHHhcC
Confidence 9998888877 58999988864
No 13
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=350.93 Aligned_cols=376 Identities=19% Similarity=0.195 Sum_probs=248.1
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
+...+||+||||||+|+++|+.|+++|++|+|+|+.+..... ..+..+++.++++|+++ |+|+++.+.......
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~----~r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~~ 76 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD----FRGDTVHPSTLELMDEL--GLLERFLELPHQKVR 76 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcc----ccCceeChhHHHHHHHc--CChhHHhhcccceee
Confidence 345689999999999999999999999999999997543221 12567899999999999 788887654322222
Q ss_pred ccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeE---EEEEcC
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKV---SVVLEN 227 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v---~v~~~~ 227 (645)
.+. +++.........++. .....++++.+++..+.+.|.+.+. ...++++++++++..+++.+ .+...+
T Consensus 77 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~ 151 (407)
T PRK06185 77 TLR-FEIGGRTVTLADFSR----LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPD 151 (407)
T ss_pred eEE-EEECCeEEEecchhh----cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCC
Confidence 222 221111011112221 1223456778999999999988753 34588899999998877765 344456
Q ss_pred Cc-EEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEE
Q 006440 228 GQ-CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (645)
Q Consensus 228 g~-~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (645)
|+ +++||+||+|||.+|.+|+.+. ......|.+...+..+ .. +.......+..+ .++..+...|.. +.+.+.+.
T Consensus 152 g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~g~~~llP~~-~~~~i~~~ 227 (407)
T PRK06185 152 GPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRL-PR-EPDDPESLMGRF-GPGQGLIMIDRG-DYWQCGYV 227 (407)
T ss_pred CcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEec-CC-CCCCCcccceEe-cCCcEEEEEcCC-CeEEEEEE
Confidence 64 7999999999999999999883 3344556554333321 11 111111234434 444455555665 44443333
Q ss_pred EeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCcc-ceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhh
Q 006440 306 HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (645)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n 384 (645)
.... ..........+.+.+.+..+.+.+.+.+...... ....+++. .....+|..+|++|+|||||.+||++|||+|
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 305 (407)
T PRK06185 228 IPKG-GYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVR-VDRLRRWHRPGLLCIGDAAHAMSPVGGVGIN 305 (407)
T ss_pred ecCC-CchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEe-ccccccccCCCeEEEeccccccCcccccchh
Confidence 3221 1111122334556666666655555444432211 11112222 2345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCC--Cccchhhhc
Q 006440 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL--GPLSFLTKF 462 (645)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 462 (645)
+||+||..|++.|.+.++.+ +....+|+.|+++|++++..++.++.. +..+|++.. ++++.+|++
T Consensus 306 lgl~Da~~La~~l~~~~~~~------~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~R~~ 372 (407)
T PRK06185 306 LAIQDAVAAANILAEPLRRG------RVSDRDLAAVQRRREFPTRVTQALQRR-------IQRRLLAPALAGRGPLGPPL 372 (407)
T ss_pred HHHHHHHHHHHHHHHHhccC------CccHHHHHHHHHHhhhHHHHHHHHHHH-------HHHhhccccccCccccCCch
Confidence 99999999999999876542 122489999999999999866554433 445667777 889999999
Q ss_pred ccCCCCccc--ceeeeecc
Q 006440 463 RIPHPGRVG--GRFFIDLA 479 (645)
Q Consensus 463 ~l~~~~~~~--~~~~~~~~ 479 (645)
+|.+++.++ |+++++++
T Consensus 373 ~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 373 LLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHHHHHhChhHHHhhHHhe
Confidence 999998887 47777665
No 14
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=9.4e-39 Score=341.76 Aligned_cols=361 Identities=19% Similarity=0.272 Sum_probs=234.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
+..+||+||||||+|+++|+.|+++|++|+|+|+.+......+ +..++++++++|+++ |+++.+.+.+......
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 76 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNG----ADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDA 76 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCc----ccccCccHHHHHHHc--CCHHHHHhcccccccc
Confidence 3468999999999999999999999999999999875432222 456999999999999 7888887654322222
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCe--EEEEEcCCc
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK--VSVVLENGQ 229 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~--v~v~~~~g~ 229 (645)
+..+. .+.....++... ....+ +.+.+.|..|.+.|.+.+. ...++++++|++++.++++ +.|++++|+
T Consensus 77 ~~~~~---~g~~~~~~~~~~-~~~~g--~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 150 (388)
T PRK07045 77 MRLYH---DKELIASLDYRS-ASALG--YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE 150 (388)
T ss_pred eEEec---CCcEEEEecCCc-cccCC--ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence 22111 122222222111 11112 2356899999999998763 3468899999999987665 468888999
Q ss_pred EEeccEEEEccCCchhhhhhhcC--CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEe
Q 006440 230 CYAGDLLIGADGIWSKVRKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (645)
++++|+||||||.+|.||+.+.+ .....|.+...+ +..... ..........+.....+++.+|..++...|++...
T Consensus 151 ~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 151 RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAF-GTIALT-DSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeE-EEEecc-CCccccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 99999999999999999997633 223445443332 332221 11111122223333445556777777666665543
Q ss_pred CCCCCCCCCcchHHHHHHHHcCCC-hhHHHHHHcCCccc-eeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 308 EPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEA-ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
.+...........+.+.+.+..|. +...+.+....... +...++ ......+|+.+||+|||||||.|+|++|||+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 229 ADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPL-GRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred cccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeec-CccccccccCCCEEEEEccccccCCCccccHHH
Confidence 322111111123445556566554 33333333222211 111112 123456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcc
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 463 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 463 (645)
||+||..|+++|...+.+ ..+..++|+.|+++|++++..++..++... ..|+++...+..+|...
T Consensus 308 ai~Da~~La~~L~~~~~~------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 372 (388)
T PRK07045 308 AIEDAGELGACLDLHLSG------QIALADALERFERIRRPVNEAVISYGHALA-------TTYHDRAALVANFRSQL 372 (388)
T ss_pred HHHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHhhhHHHHHHhhhHHHh-------hhcccchhHHHHHHhhh
Confidence 999999999999876532 234678999999999999998887766432 33444455556666554
No 15
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=8.2e-39 Score=344.91 Aligned_cols=341 Identities=25% Similarity=0.396 Sum_probs=243.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc---
Q 006440 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD--- 153 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~--- 153 (645)
.+|+||||||+||++|+.|+++| ++|+|+|+.+.. ... +.++.+.++++++|+++ |+.+.+...+.....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~-~~~---G~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~ 74 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF-GEV---GAGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQ 74 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC-CCC---ccceeeCccHHHHHHHc--CChhHHHHHhcCCCccCc
Confidence 36999999999999999999998 599999997543 222 33788999999999999 666666554321111
Q ss_pred ccc-cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 154 RIN-GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
... .+.++...... ... ...+.+ ...++|..|.+.|.+.+....++++++|++++.++++++|++++|++++
T Consensus 75 ~~~~~~~~~~~~~~~-~~~-----~~~~~~-~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 147 (414)
T TIGR03219 75 DIWFEWRNGSDASYL-GAT-----IAPGVG-QSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYR 147 (414)
T ss_pred ceeEEEEecCcccee-eee-----ccccCC-cccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEE
Confidence 110 01111111110 000 001111 1368999999999998866668899999999998889999999999999
Q ss_pred ccEEEEccCCchhhhhhhcC-----CCCCcccCeEEEEEEeccCC--CC-----cc---ccceEEEecCceEEEEeecCC
Q 006440 233 GDLLIGADGIWSKVRKNLFG-----PQEAIYSGYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGA 297 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~~~~~ 297 (645)
+|+||+|||.+|.||+.+++ ...+.|.++.+|.++..... .. .+ ......+.+.+.+++.+|..+
T Consensus 148 ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (414)
T TIGR03219 148 CDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQ 227 (414)
T ss_pred eeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCC
Confidence 99999999999999999853 23456777778777653211 00 00 012245667777777888877
Q ss_pred CeE-EEEEEEeCCCC--------CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEE
Q 006440 298 GKM-QWYAFHKEPAG--------GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 368 (645)
Q Consensus 298 ~~~-~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLv 368 (645)
+.. +|..+...+.. .........+.+++.|..|.+.+.+++...... ..+.++...+.++|+.|||+||
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~w~~grv~Li 305 (414)
T TIGR03219 228 GRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAP--TLWALHDLAELPGYVHGRVALI 305 (414)
T ss_pred CcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCC--CceeeeecccccceeeCcEEEE
Confidence 764 34444322211 111123356778889999999888877765443 2345555556778999999999
Q ss_pred ccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006440 369 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (645)
Q Consensus 369 GDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 439 (645)
|||||.|+|+.|||+|+||+||..|+++|...... ..+++.+|+.|+++|++++..++.+++...
T Consensus 306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 370 (414)
T TIGR03219 306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELE------AGDLPALLEAYDDVRRPRACRVQRTSREAG 370 (414)
T ss_pred EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccC------cchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864321 345789999999999999999999887644
No 16
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.2e-38 Score=338.94 Aligned_cols=343 Identities=31% Similarity=0.436 Sum_probs=242.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
+..||+||||||+|+++|+.|+++|++|+|+|+.+... .. +.++.++++++++|+++ |+++.+...+... ..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~-~~---g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~-~~~ 75 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG-EI---GAGIQLGPNAFSALDAL--GVGEAARQRAVFT-DHL 75 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc-cc---cceeeeCchHHHHHHHc--CChHHHHhhccCC-cce
Confidence 45799999999999999999999999999999986432 22 23688999999999999 7788776654321 122
Q ss_pred ccccccCCCceeeeccCCC-chhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 156 NGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
. +.+...+.....++... .....+.++ +.++|..|.+.|.+.+. ...+++++++++++.+++++.+++.+|+++
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 76 T-MMDAVDAEEVVRIPTGQAFRARFGNPY-AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRW 153 (396)
T ss_pred E-EEeCCCCCEEEEeccchhHHHhcCCcE-EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEE
Confidence 1 22222222222222111 011233343 57899999999998763 245888999999998888899999999899
Q ss_pred eccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccC--CCCccccceEEEecCceEEEEeecCCCeE-EEEEEEeC
Q 006440 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFV--PADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKE 308 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 308 (645)
+||+||+|||.+|.+|+.+.+. ...|.+..++.+..... +..........+.+++.+++.+|..++.. .+++....
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~ 232 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHS 232 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECC
Confidence 9999999999999999988543 34556666666554321 11111122345666777777788876653 33333322
Q ss_pred CC-CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 309 PA-GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 309 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
.. ..........+.+.+.|..|.+.+.+++..... +..+.++...+..+|..|||+|+|||||.|+|++|||+|+||
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 310 (396)
T PRK08163 233 REQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTS--WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMAL 310 (396)
T ss_pred CCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCc--eeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHH
Confidence 21 111112234677889999999888777654332 223344455566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 439 (645)
+||.+|+++|... ..+.+.+|+.|+++|++++..++..++.+.
T Consensus 311 ~Da~~La~~L~~~---------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~ 353 (396)
T PRK08163 311 EDAVTLGKALEGC---------DGDAEAAFALYESVRIPRTARVVLSAREMG 353 (396)
T ss_pred HHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999752 224678999999999999999888876544
No 17
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1e-39 Score=349.83 Aligned_cols=377 Identities=19% Similarity=0.194 Sum_probs=244.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCC--cccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+......+. ......++++++++|+.+ |+|+.+.........
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL--GVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc--CChhhhhhhhCcccc
Confidence 4589999999999999999999999999999997533221111 112367899999999999 888888654322211
Q ss_pred ccccccccCCCceeeeccCCCchhhcC-CCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCCc
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~ 229 (645)
.+. .++...+. ..++.. ... ...++.++|..|++.|.+.+. ...+++++++++++.+++++.|++++|+
T Consensus 82 ~~~-~~~~~~~~--~~~~~~----~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 154 (391)
T PRK08020 82 RLE-TWEWETAH--VVFDAA----ELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE 154 (391)
T ss_pred eEE-EEeCCCCe--EEeccc----ccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC
Confidence 211 11111121 222211 111 124678999999999988752 3357889999999988888999999998
Q ss_pred EEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeC
Q 006440 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (645)
+++||+||+|||.+|.||+.+. +...+.|.+...+..+ .. +.......+..+...+...+ +|..++...++++..
T Consensus 155 ~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~v~~~~- 230 (391)
T PRK08020 155 EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISV-KC-ENPPGDSTWQQFTPSGPRAF-LPLFDNWASLVWYDS- 230 (391)
T ss_pred EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEE-Ee-cCCCCCEEEEEEcCCCCEEE-eECCCCcEEEEEECC-
Confidence 9999999999999999999983 4445667654333322 21 11122233445555554433 355444333322211
Q ss_pred CCCCCCCCcchHHHHHHHH-cCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 309 PAGGVDGPEGKKERLLKIF-EGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
+...........+++.+.+ ..|.+.+.+ ........+++.. ....+|..+|++|+|||||.++|++|||+|+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~pl~~-~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al 305 (391)
T PRK08020 231 PARIRQLQAMSMAQLQQEIAAHFPARLGA----VTPVAAGAFPLTR-RHALQYVQPGLALVGDAAHTINPLAGQGVNLGY 305 (391)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhhhccc----eEeccccEeecce-eehhhhccCcEEEEechhhccCCcccchhHHHH
Confidence 1000000000112222211 112111111 1000111223322 245689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCC
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (645)
+||.+|+++|.+....+ .+.....+|+.|+++|++++..++. .++. +..+|+++..+++.+|+++|..+
T Consensus 306 ~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~------~~~~-l~~~~~~~~~~~~~~R~~~l~~~ 374 (391)
T PRK08020 306 RDVDALLDVLVNARSYG----EAWASEAVLKRYQRRRMADNLLMQS------GMDL-FYAGFSNNLPPLRFARNLGLMAA 374 (391)
T ss_pred HHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHcCCchHHHHHHHHHHHHH
Confidence 99999999998865431 1223568999999999999864433 3333 55678888899999999999999
Q ss_pred Cccc--ceeeeeccch
Q 006440 468 GRVG--GRFFIDLAMP 481 (645)
Q Consensus 468 ~~~~--~~~~~~~~~~ 481 (645)
+.++ |+++++++||
T Consensus 375 ~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 375 QRAGVLKRQALKYALG 390 (391)
T ss_pred hcCHHHHHHHHHHHcC
Confidence 9887 5888888876
No 18
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=338.01 Aligned_cols=334 Identities=28% Similarity=0.375 Sum_probs=231.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
++..+|+||||||+|+++|+.|+++|++|+|+|+.+......| .++.+.++++++|+++ |+.+.. ..+.... .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g---~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~-~ 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRG---AGIVLQPELLRALAEA--GVALPA-DIGVPSR-E 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCC---ceeEeCHHHHHHHHHc--CCCccc-ccccCcc-c
Confidence 4568999999999999999999999999999999864332222 3678999999999999 555433 2221111 1
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEecc
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 234 (645)
.. +.+ ..+......+ .+ ...+.+..|.+.|.+.++...++++++|++++.++++++|++++|++++||
T Consensus 77 ~~-~~~-~~g~~~~~~~---------~~-~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 144 (386)
T PRK07236 77 RI-YLD-RDGRVVQRRP---------MP-QTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETAD 144 (386)
T ss_pred eE-EEe-CCCCEeeccC---------CC-ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeC
Confidence 11 111 1122111111 11 123568889999998887666899999999999999999999999999999
Q ss_pred EEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCcc-----ccceEEEecCceEEEEeecCC---------CeE
Q 006440 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIE-----SVGYRVFLGHKQYFVSSDVGA---------GKM 300 (645)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------~~~ 300 (645)
+||+|||.+|.||+.+++.....|.+..+|.++......... ...+..+.+++..++.++.++ ..+
T Consensus 145 ~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (386)
T PRK07236 145 LLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRY 224 (386)
T ss_pred EEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEE
Confidence 999999999999999976667778888878776532111110 123445566666666666543 224
Q ss_pred EEEEEEeCCCCC-C-------------------CCCcchHHHHHHHHcC-CChhHHHHHHcCCccceeecccccCCCCCc
Q 006440 301 QWYAFHKEPAGG-V-------------------DGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFT 359 (645)
Q Consensus 301 ~~~~~~~~~~~~-~-------------------~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (645)
+|+++...+... . .......+.+.+.+.. |.+.+.+.+...... ..+.++... ..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~ 301 (386)
T PRK07236 225 NWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDLE-VPR 301 (386)
T ss_pred EEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhccc-Ccc
Confidence 555544332200 0 0011233445555554 777777777655432 223343332 467
Q ss_pred ccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006440 360 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (645)
Q Consensus 360 ~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 439 (645)
|..||++|||||||+|+|+.|||+|+||+||..|+++|.... .+...+|+.|+++|++++..++..++.+.
T Consensus 302 ~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---------~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 372 (386)
T PRK07236 302 MAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---------GDIDAALAAWEAERLAVGAAIVARGRRLG 372 (386)
T ss_pred cccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997631 23578999999999999999988887544
No 19
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=337.45 Aligned_cols=335 Identities=31% Similarity=0.434 Sum_probs=234.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||+|+++|+.|+++|++|+|+|+.+... ..| .++.+.++++++|+++ |+++++...+... ..+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g---~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~-~~~~- 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PLG---VGINLLPHAVRELAEL--GLLDALDAIGIRT-RELA- 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-ccC---cceeeCchHHHHHHHC--CCHHHHHhhCCCC-cceE-
Confidence 489999999999999999999999999999976432 222 3688999999999999 7888876654322 1221
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc----CCceEEcCceEEEEEeeCCeEEEEEcCC-----
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----- 228 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~----~~~~i~~~~~v~~i~~~~~~v~v~~~~g----- 228 (645)
+.+. .+....... .........+ .+.++|..|++.|.+.+ +...++++++|++++++++++.+.+.++
T Consensus 73 ~~~~-~g~~~~~~~-~~~~~~~~~~-~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 73 YFNR-HGQRIWSEP-RGLAAGYDWP-QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDL 149 (413)
T ss_pred EEcC-CCCEEeecc-CCcccCCCCc-eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCcc
Confidence 1221 122221111 1101112223 35799999999998875 3345899999999998888777777553
Q ss_pred cEEeccEEEEccCCchhhhhhhcCCC-CCcccCeEEEEEEeccCCCCccccceEEEec-CceEEEEeecCCC-------e
Q 006440 229 QCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLG-HKQYFVSSDVGAG-------K 299 (645)
Q Consensus 229 ~~i~a~lvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~ 299 (645)
++++||+||||||.+|.||+++.+.. ...|.+...|.+.....+ ........+.+ .+..++.+|...+ .
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~ 227 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPP--FLTGRSMVMAGHLDGKLVVYPISEPVDADGRQL 227 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcc--ccCCCcEEEEcCCCCEEEEEECCCCcccCCceE
Confidence 48999999999999999999995443 567777777777654321 11111122332 2445666666542 5
Q ss_pred EEEEEEEeCCCC-----CCCCCcchHHHHHHHHcCCChh---HHHHHHcCCccceeecccccCCCCCcccCCcEEEEccc
Q 006440 300 MQWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDS 371 (645)
Q Consensus 300 ~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDA 371 (645)
++|++....+.. .........+++++.|..|... +.+.+.... .+..+++....+.++|..|||+|||||
T Consensus 228 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDA 305 (413)
T PRK07538 228 INWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDA 305 (413)
T ss_pred EEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeec
Confidence 678776654321 1111234467778888877653 445554332 234556666667789999999999999
Q ss_pred cCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006440 372 VHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (645)
Q Consensus 372 AH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 437 (645)
||.|+|++|||+|+||+||..|+++|.+. .+.+++|+.|+++|++++..++..++.
T Consensus 306 AH~~~P~~GqG~~~Ai~Da~~La~~L~~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 306 AHPMYPVGSNGASQAILDARALADALAAH----------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred cCcCCCCCcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 99999999999999999999999999863 135789999999999999988877765
No 20
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.2e-39 Score=348.99 Aligned_cols=373 Identities=18% Similarity=0.188 Sum_probs=243.5
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
++..+||+||||||+|+++|+.|+++|++|+|+|+.+.... . +...+.++++++|+++ |+|+++...... ..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~----r~~~l~~~s~~~l~~l--gl~~~~~~~~~~-~~ 75 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-L----RTTALLGPSIRFLERL--GLWARLAPHAAP-LQ 75 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-c----chhhCcHHHHHHHHHh--CchhhhHhhcce-ee
Confidence 34568999999999999999999999999999999754321 1 2355778899999999 889888664422 11
Q ss_pred ccccccccCCCce----eeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcC
Q 006440 154 RINGLVDGISGSW----YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN 227 (645)
Q Consensus 154 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~ 227 (645)
.+. +.+.. +.. ...++. ......++++.+++..|.+.|.+.+.. .+.+++++|++++.+++++.|++++
T Consensus 76 ~~~-~~~~~-g~~~~~~~~~~~~---~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~ 150 (388)
T PRK07494 76 SMR-IVDAT-GRLIRAPEVRFRA---AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLAD 150 (388)
T ss_pred EEE-EEeCC-CCCCCCceEEEcH---HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECC
Confidence 221 22211 111 111211 111123457889999999999987632 2347799999999999999999999
Q ss_pred CcEEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEE
Q 006440 228 GQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (645)
Q Consensus 228 g~~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (645)
|++++||+||+|||.+|.+|+.+. ......|.+...+..+. . +.......+.++...+ .+..+|.+++...+++..
T Consensus 151 g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~-~-~~~~~~~~~~~~~~~g-~~~~~Pl~~~~~~~v~~~ 227 (388)
T PRK07494 151 GTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFT-H-SRPHQNVSTEFHTEGG-PFTQVPLPGRRSSLVWVV 227 (388)
T ss_pred CCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEe-c-cCCCCCEEEEEeCCCC-cEEEEECCCCcEEEEEEC
Confidence 999999999999999999999983 33345565543322222 1 1111122233444444 455567766655544432
Q ss_pred eCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCc-cceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 307 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
..+.. ........+.+.+.+..+. .+.+..... .....+++... ...+|..+|++|+|||||.++|++|||+|+
T Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~ 302 (388)
T PRK07494 228 RPAEA-ERLLALSDAALSAAIEERM---QSMLGKLTLEPGRQAWPLSGQ-VAHRFAAGRTALVGEAAHVFPPIGAQGLNL 302 (388)
T ss_pred CHHHH-HHHHcCCHHHHHHHHHHHH---hhhcCCeEEccCCcEeechHH-HHHhhccCceEEEEhhhhcCCchhhcccch
Confidence 21100 0000011223333332211 111111100 11122333322 235789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccC
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (645)
||+||..|+++|.+... +.....+|+.|+++|++++..++.. ++. +...|....++++.+|+++|.
T Consensus 303 ~l~Da~~La~~L~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~R~~~l~ 368 (388)
T PRK07494 303 GLRDVATLVEIVEDRPE-------DPGSAAVLAAYDRARRPDILSRTAS------VDL-LNRSLLSDFLPVQDLRAAGLH 368 (388)
T ss_pred hHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHcCCchHHHHHHHHHHH
Confidence 99999999999987321 2345789999999999998754332 222 456777888999999999999
Q ss_pred CCCccc--ceeeeeccch
Q 006440 466 HPGRVG--GRFFIDLAMP 481 (645)
Q Consensus 466 ~~~~~~--~~~~~~~~~~ 481 (645)
..+.++ ++++++++||
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 369 LLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHhhCHHHHHHHHHHhcC
Confidence 988887 4888888875
No 21
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=2.2e-38 Score=351.82 Aligned_cols=369 Identities=20% Similarity=0.282 Sum_probs=243.7
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
+..+||+||||||+|+++|+.|+++|++|+|+|+.+..... ..++.++++++++|+++ |+++++...+.... .
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~ 80 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAVGIDDEALRVLQAI--GLADEVLPHTTPNH-G 80 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----CceeeeCHHHHHHHHHc--CChhHHHhhcccCC-c
Confidence 45689999999999999999999999999999998644322 22678999999999999 78888876543221 2
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEc--CC-
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NG- 228 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~--~g- 228 (645)
+. +.+ ..+.....++. ......+++..+.+.|..+++.|.+.+. ...++++++|+++++++++++++++ +|
T Consensus 81 ~~-~~~-~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 81 MR-FLD-AKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred eE-EEc-CCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 21 222 12333333332 1112334555567899999999988753 3468999999999999999998886 46
Q ss_pred -cEEeccEEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEE
Q 006440 229 -QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (645)
Q Consensus 229 -~~i~a~lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (645)
++++||+||||||++|.||+.+.. .....|........+ ..............+..++..++.++.+++...|.+..
T Consensus 158 ~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 236 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDV-LIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML 236 (538)
T ss_pred EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEE-ecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence 479999999999999999999832 223334332221111 11111111112334556666667777777777776544
Q ss_pred eCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeeccccc--CCCCCcccCCcEEEEccccCcCCCCCcchhh
Q 006440 307 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (645)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n 384 (645)
.... ... .....+.+.+.+..|... .....+.....+. .....+|..|||+|+|||||.++|++|||+|
T Consensus 237 ~~~~-~~~-~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n 307 (538)
T PRK06183 237 LPGE-TEE-QLASPENVWRLLAPWGPT-------PDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMN 307 (538)
T ss_pred CCCC-Chh-hcCCHHHHHHHHHhhCCC-------CcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchh
Confidence 3211 111 112345566666555210 0001111111221 1235689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccc
Q 006440 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (645)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (645)
+||+||.+|+|+|+..+++ ...+.+|+.|+++|++++..++.++..+. .++....+....+|+..+
T Consensus 308 ~gi~DA~~La~kLa~~~~g-------~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~-------~~~~~~~~~~~~~R~~~l 373 (538)
T PRK06183 308 SGIRDAANLAWKLAAVLRG-------RAGDALLDTYEQERRPHARAMIDLAVRLG-------RVICPTDRLAAALRDAVL 373 (538)
T ss_pred hhHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhccCCCHHHHHHHHHHH
Confidence 9999999999999977653 12468999999999999998887776433 233444555677788766
Q ss_pred CCCCccc--ceeeee
Q 006440 465 PHPGRVG--GRFFID 477 (645)
Q Consensus 465 ~~~~~~~--~~~~~~ 477 (645)
......+ ++++++
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (538)
T PRK06183 374 RALNYLPPLKRYVLE 388 (538)
T ss_pred HhhhcCcchhhhhhh
Confidence 6555544 244444
No 22
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=8.3e-38 Score=331.16 Aligned_cols=336 Identities=23% Similarity=0.301 Sum_probs=221.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.||+||||||+|+++|+.|+++|++|+|+|+.+... ..| .++.+.++++++|+++ |+++++.+.+... ..+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g---~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~-~~~~- 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGG---QAIDVRGPALDVLERM--GLLAAAQEHKTRI-RGAS- 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCc---eeeeeCchHHHHHHhc--CCHHHHHhhccCc-cceE-
Confidence 489999999999999999999999999999985432 222 2578899999999999 7888886654322 2221
Q ss_pred ccccCCCceeeeccCCCc-hhhcCCCeEEeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeCCeEEEEEcCCcEEeccE
Q 006440 158 LVDGISGSWYIKFDTFTP-AAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 235 (645)
+.+. .+..........+ ....+.+ .+.+.|.+|.+.|.+.+.. ..++++++|+++++++++++|++++|+++++|+
T Consensus 74 ~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 74 FVDR-DGNELFRDTESTPTGGPVNSP-DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEeC-CCCEEeecccccccCCCCCCc-eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 2221 2222211111000 0011112 3578899999998876533 358899999999988889999999999999999
Q ss_pred EEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEE-EecCceEEEEeecCCCeE-EEEEEEeCCC--C
Q 006440 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGKM-QWYAFHKEPA--G 311 (645)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 311 (645)
||||||.+|.||+.+++........+..+..+.. .+.......+.. +.+.+.+++.++..++.. ..++.+.... .
T Consensus 152 vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (372)
T PRK05868 152 VIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFT-VPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI 230 (372)
T ss_pred EEECCCCCchHHHHhcCCcccceeecceEEEEEE-cCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc
Confidence 9999999999999995533222111111222211 122122222333 357777777777765433 2222222111 1
Q ss_pred CCCCCcchHHHHHHHHc--CCC-hhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHH
Q 006440 312 GVDGPEGKKERLLKIFE--GWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (645)
Q Consensus 312 ~~~~~~~~~~~l~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~ 388 (645)
.........+.+.+.|. .|. +.+.+.+..... + .+......+.++|++|||+|||||||+++|+.|||+|+||+
T Consensus 231 ~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~--~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~Ale 307 (372)
T PRK05868 231 DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPD--F-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALL 307 (372)
T ss_pred ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCc--e-eeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHH
Confidence 11112334677888887 575 344444332221 1 11211233457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 006440 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (645)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 436 (645)
||..|+++|... ..+++++|+.||+.++|++...|.+..
T Consensus 308 Da~~La~~L~~~---------~~~~~~al~~ye~~~~~~~~~~q~~~~ 346 (372)
T PRK05868 308 GAYILAGELKAA---------GDDYQLGFANYHAEFHGFVERNQWLVS 346 (372)
T ss_pred HHHHHHHHHHhc---------CCCHHHHHHHHHHHHhHHHHHhhhhhh
Confidence 999999999652 224789999999999998887766543
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.4e-38 Score=343.87 Aligned_cols=377 Identities=20% Similarity=0.199 Sum_probs=239.0
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
...+||+||||||+|+++|+.|+++|++|+|+|+.+...... .+.++.++++++++|+++ |+++++...+... ..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~-~~ 90 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALSLLSARIFEGI--GVWEKILPQIGKF-RQ 90 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEechHHHHHHHHC--ChhhhhHhhcCCc-cE
Confidence 346899999999999999999999999999999986432211 123578999999999999 8899887654322 11
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCC---
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG--- 228 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g--- 228 (645)
+. +.+.. +.....+.... ......++.+.+..|.+.|.+.+. ...+++++++++++.+++++.|++.++
T Consensus 91 ~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~ 165 (415)
T PRK07364 91 IR-LSDAD-YPGVVKFQPTD---LGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQ 165 (415)
T ss_pred EE-EEeCC-CCceeeecccc---CCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcc
Confidence 11 22221 11122222111 111223455555578888887753 345788999999998888888888743
Q ss_pred cEEeccEEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEe
Q 006440 229 QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (645)
Q Consensus 229 ~~i~a~lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (645)
.+++||+||||||.+|.||+.+.. .....|.+ .++...... +.......+..|...+ .++.+|.+++...|++...
T Consensus 166 ~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~ 242 (415)
T PRK07364 166 QTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKH-EAPHNDIAYERFWPSG-PFAILPLPGNRCQIVWTAP 242 (415)
T ss_pred eEEeeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEc-cCCCCCEEEEEecCCC-CeEEeECCCCCEEEEEECC
Confidence 369999999999999999998832 22334433 222222211 1111222233344444 3556677777665544322
Q ss_pred CCCCC---CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhh
Q 006440 308 EPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (645)
Q Consensus 308 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n 384 (645)
..... ....+...+.+.+.+..|.+.+ .... ....+++... ...+|..+|++|||||||.++|++|||+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 315 (415)
T PRK07364 243 HAQAKALLALPEAEFLAELQQRYGDQLGKL----ELLG--DRFLFPVQLM-QSDRYVQHRLALVGDAAHCCHPVGGQGLN 315 (415)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhhhhcCc----eecC--CCceecchhh-hhhhhcCCcEEEEecccccCCCcccccHh
Confidence 11000 0001111222333333332211 0111 1112233222 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccc
Q 006440 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (645)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (645)
+||+||..|+++|......+ .+.....+|+.|+++|++++..++.+++. +..+|..+..+...+|++.+
T Consensus 316 ~al~DA~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~~ 384 (415)
T PRK07364 316 LGIRDAAALAQVLQTAHQRG----EDIGSLAVLKRYERWRKRENWLILGFTDL-------LDRLFSNQWWPLVVVRRLGL 384 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHH
Confidence 99999999999998865421 11223589999999999999877666543 33455666777888999888
Q ss_pred CCCCccc--ceeeeeccchh
Q 006440 465 PHPGRVG--GRFFIDLAMPL 482 (645)
Q Consensus 465 ~~~~~~~--~~~~~~~~~~~ 482 (645)
.+.+.++ ++++++.++|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~g~ 404 (415)
T PRK07364 385 WLLRHVPPLKRLALRLMTGL 404 (415)
T ss_pred HHHhhCHHHHHHHHHHHcCC
Confidence 8777765 46777777664
No 24
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=341.11 Aligned_cols=366 Identities=16% Similarity=0.161 Sum_probs=238.2
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHCC----CeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhc
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRKG----FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g----~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~ 148 (645)
+..+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+.. . ....++.+++.++++|+++ |+|++. .
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-~-~~~r~~~l~~~~~~~L~~l--g~~~~~---~ 79 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS-A-NDPRAIALSHGSRVLLETL--GAWPAD---A 79 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC-C-CCceEEEecHHHHHHHHhC--CCchhc---C
Confidence 4455689999999999999999999997 47999999753221 1 1123678999999999999 777752 1
Q ss_pred cccccccccccc-cCCCceeeeccCCCchhhcCC-CeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEE
Q 006440 149 CVTGDRINGLVD-GISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVV 224 (645)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~ 224 (645)
. ....+. +.+ +..+...+... ..+. +.++.++|..|++.|.+++.. ..+++++++++++.++++++++
T Consensus 80 ~-~~~~~~-~~~~~~~g~~~~~~~------~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~ 151 (398)
T PRK06996 80 T-PIEHIH-VSQRGHFGRTLIDRD------DHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLA 151 (398)
T ss_pred C-cccEEE-EecCCCCceEEeccc------ccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEE
Confidence 1 111221 121 11222222211 1122 247899999999999998743 3578899999999999999999
Q ss_pred EcCC---cEEeccEEEEccCC-chhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCe
Q 006440 225 LENG---QCYAGDLLIGADGI-WSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 299 (645)
Q Consensus 225 ~~~g---~~i~a~lvVgADG~-~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (645)
+.++ ++++||+||+|||. +|.+|+.++. .....|.+ .++++..... ...+...+..+...+. +..+|..++.
T Consensus 152 ~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~~~~~~G~-~~~lp~~~~~ 228 (398)
T PRK06996 152 LGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQ-TAIVGTVTVS-APRPGWAWERFTHEGP-LALLPLGGPR 228 (398)
T ss_pred ECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCC-eEEEEEEEcc-CCCCCEEEEEecCCCC-eEEeECCCCC
Confidence 9865 58999999999997 5888888743 33455554 4555543321 1122233444554454 4444665443
Q ss_pred ---EEEEEEEeCCCC---CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccC
Q 006440 300 ---MQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVH 373 (645)
Q Consensus 300 ---~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH 373 (645)
+.+++....... .........+.+.+.|..+...+ ....+ ...+++. .....+|..|||+|+|||||
T Consensus 229 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--~~~~~l~-~~~~~~~~~grv~LiGDAAH 301 (398)
T PRK06996 229 QADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRF----TRIAG--RHAFPLG-LNAARTLVNGRIAAVGNAAQ 301 (398)
T ss_pred CCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCce----EEecc--eEEEeee-cccccceecCCEEEEEhhhc
Confidence 333332211100 00011112233333333322111 00011 1112222 33456899999999999999
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCC
Q 006440 374 AMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL 453 (645)
Q Consensus 374 ~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 453 (645)
.++|++|||+|+||+||.+|+++|... + ....+|+.|+++|++++..++..++. +..+|+.+.
T Consensus 302 ~~~P~~GQG~n~ai~Da~~La~~L~~~--~--------~~~~~L~~Y~~~R~~~~~~~~~~s~~-------l~~~~~~~~ 364 (398)
T PRK06996 302 TLHPVAGQGLNLGLRDAHTLADALSDH--G--------ATPLALATFAARRALDRRVTIGATDL-------LPRLFTVDS 364 (398)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHhc--C--------CcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCc
Confidence 999999999999999999999999652 1 12577999999999999988776654 334566677
Q ss_pred CccchhhhcccCCCCccc--ceeeeeccc
Q 006440 454 GPLSFLTKFRIPHPGRVG--GRFFIDLAM 480 (645)
Q Consensus 454 ~~~~~~r~~~l~~~~~~~--~~~~~~~~~ 480 (645)
+++..+|++.|.+++.++ |+++++++|
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 365 RPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred hHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 788999999998888877 477877776
No 25
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.5e-38 Score=339.47 Aligned_cols=375 Identities=20% Similarity=0.215 Sum_probs=244.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
+||+||||||+|+++|+.|+++| ++|+|+|+.+..... ....++.++++++++|+++ |+++.+...+... ..+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~--~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~-~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS--RDPRASAIAAAARRMLEAL--GVWDEIAPEAQPI-TDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC--CCcceEEecHHHHHHHHHC--CChhhhhhhcCcc-cEE
Confidence 79999999999999999999996 999999998642211 1123678999999999999 8888887654322 112
Q ss_pred ccccccCCCc----eeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCc
Q 006440 156 NGLVDGISGS----WYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 229 (645)
Q Consensus 156 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~ 229 (645)
. +.+...+. ....++. ....+.++++.++|..|++.|.+.+.. ..++++++|++++.+++.+.|++++|+
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 152 (403)
T PRK07333 77 V-ITDSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS 152 (403)
T ss_pred E-EEeCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence 1 22211111 1122211 111245567789999999999987632 358889999999998899999999999
Q ss_pred EEeccEEEEccCCchhhhhhhcC-CCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeC
Q 006440 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (645)
++++|+||+|||.+|.+|+.+.. .....|.+. ++........ .........+. ++..+..+|..++...|.+....
T Consensus 153 ~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~Pl~~~~~~~~~~~~~ 229 (403)
T PRK07333 153 VLEARLLVAADGARSKLRELAGIKTVGWDYGQS-GIVCTVEHER-PHGGRAEEHFL-PAGPFAILPLKGNRSSLVWTERT 229 (403)
T ss_pred EEEeCEEEEcCCCChHHHHHcCCCcccccCCCE-EEEEEEEcCC-CCCCEEEEEeC-CCCceEEeECCCCCeEEEEECCH
Confidence 99999999999999999998843 223445443 3332222211 11122233333 34445566787777665443211
Q ss_pred CCCC---CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhH
Q 006440 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (645)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~ 385 (645)
.... ........+.+.+.+..|.+.+. ... ....+++. .....+|..+||+|||||||.++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~~~-~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 302 (403)
T PRK07333 230 ADAERLVALDDLVFEAELEQRFGHRLGELK----VLG--KRRAFPLG-LTLARSFVAPRFALVGDAAHGIHPIAGQGLNL 302 (403)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhhhcCceE----ecc--CccEeech-hhhhhhccCCCEEEEechhhcCCCccccchhh
Confidence 0000 00000112223333332221110 000 00112221 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccC
Q 006440 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (645)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (645)
||+||.+|+++|....+.+ .+.....+|+.|+++|++++..++..++. ...+|..+..++..+|+..+.
T Consensus 303 ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~ 371 (403)
T PRK07333 303 GLKDVAALAEVVVEAARLG----LDIGSLDVLERYQRWRRFDTVRMGVTTDV-------LNRLFSNDSTLLRSVRDIGLG 371 (403)
T ss_pred hHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999876431 12235789999999999999877665543 334566667778889998888
Q ss_pred CCCccc--ceeeeeccchh
Q 006440 466 HPGRVG--GRFFIDLAMPL 482 (645)
Q Consensus 466 ~~~~~~--~~~~~~~~~~~ 482 (645)
..+.++ +++++++++|+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~ 390 (403)
T PRK07333 372 LVDRLPKLKSFFIRQAAGL 390 (403)
T ss_pred HHhcCHHHHHHHHHHHhCc
Confidence 777765 47888888763
No 26
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=324.23 Aligned_cols=341 Identities=28% Similarity=0.386 Sum_probs=233.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
+..||+||||||+|+++|+.|+++|++|+|+|+.+.... . +.++.+.++++++|+.+ |+++.+.+.+... ..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~---g~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~-~~~ 75 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV-Y---GAGITLQGNALRALREL--GVLDECLEAGFGF-DGV 75 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc-C---CceeeecHHHHHHHHHc--CCHHHHHHhCCCc-cce
Confidence 356999999999999999999999999999999764322 2 23688999999999999 7888877654321 111
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (645)
. +.+ ..+.....++... .....++....+.|..|.+.|.+.+. ...++++++|++++.+++++.+++.+|+++++
T Consensus 76 ~-~~~-~~g~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 152 (375)
T PRK06847 76 D-LFD-PDGTLLAELPTPR-LAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRY 152 (375)
T ss_pred E-EEC-CCCCEEEecCccc-ccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEc
Confidence 1 122 1222222222110 01112233457899999999988763 23588899999999888889999999999999
Q ss_pred cEEEEccCCchhhhhhhcCC-CCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCC
Q 006440 234 DLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 312 (645)
Q Consensus 234 ~lvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (645)
|+||+|||.+|.+|+.+++. ..+.|.+..++.+..... ... .....|.+++..+..+|..++...|+.....+...
T Consensus 153 d~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (375)
T PRK06847 153 DLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRP-AEV--DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNP 229 (375)
T ss_pred CEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCC-CCc--cceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccc
Confidence 99999999999999988543 345666666665543321 111 12355666666777778777666555443322211
Q ss_pred CCCCcchHHHHHHHHcCCChh-HHHHHHcCCc-cceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 313 VDGPEGKKERLLKIFEGWCDN-VVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
........+.+.+.+..|.+. ...+...... .....+++.......+|..+||+|||||||.++|++|||+|+||+||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA 309 (375)
T PRK06847 230 RIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA 309 (375)
T ss_pred cCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence 111222345566677777653 3333322221 11222333333334579999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 439 (645)
..|+++|... ....++|+.|+++|++++..++..++...
T Consensus 310 ~~La~~L~~~----------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~ 348 (375)
T PRK06847 310 IVLAEELARH----------DSLEAALQAYYARRWERCRMVVEASARIG 348 (375)
T ss_pred HHHHHHHhhC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999752 24578999999999999999988886543
No 27
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=5e-37 Score=338.59 Aligned_cols=336 Identities=20% Similarity=0.283 Sum_probs=216.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+.... .+..++++++++|+++ |+++++.+.+..... .
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~----ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~-~ 74 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGS----RGKGIQPRTQEVFDDL--GVLDRVVAAGGLYPP-M 74 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCc----cceeecHHHHHHHHHc--CcHHHHHhcCccccc-e
Confidence 45899999999999999999999999999999986543221 2577899999999999 888988776542211 1
Q ss_pred ccccccCCCceeeeccC---CCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEE---cC
Q 006440 156 NGLVDGISGSWYIKFDT---FTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL---EN 227 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~---~~ 227 (645)
. ++... +. ...... ........++..+.++|..|++.|.+.+.. ..+++++++++++++++++++++ .+
T Consensus 75 ~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~ 151 (502)
T PRK06184 75 R-IYRDD-GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG 151 (502)
T ss_pred e-EEeCC-ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC
Confidence 1 11111 11 111110 000011223445789999999999887632 35889999999999988888887 56
Q ss_pred CcEEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCc-eEEEEeecCCCeE-EEEE
Q 006440 228 GQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGKM-QWYA 304 (645)
Q Consensus 228 g~~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 304 (645)
+++++||+||+|||++|.||+.+. ......+.....+...... .......+..|.... ..+..+|..++.. .+.+
T Consensus 152 ~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 229 (502)
T PRK06184 152 EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSL--TGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQA 229 (502)
T ss_pred eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEe--ecCCCcceEEccCCCCcEEEEEEccCCCeEEEEE
Confidence 678999999999999999999983 3334444331112211111 111223344454433 4555666655433 3332
Q ss_pred EEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhh
Q 006440 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (645)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n 384 (645)
.. +... ......+.+.+.+..+.....-.+. .......+.+. ...+.+|..|||+|+|||||.++|++|||||
T Consensus 230 ~~--~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n 302 (502)
T PRK06184 230 PL--PPGG--EPDLSADGLTALLAERTGRTDIRLH--SVTWASAFRMN-ARLADRYRVGRVFLAGDAAHVHPPAGGQGLN 302 (502)
T ss_pred Ec--CCCc--cCCCCHHHHHHHHHHhcCCCCccee--eeeeeeccccc-eeEhhhhcCCcEEEeccccccCCCccccccc
Confidence 22 2111 1122334455544433221000000 00001111111 1224689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006440 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (645)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 438 (645)
+||+||.+|+|+|+.++++ ..+.+|+.|+++|++++..++..++..
T Consensus 303 ~gi~DA~~LawkLa~vl~g--------~~~~lL~~Ye~eR~p~~~~~~~~s~~~ 348 (502)
T PRK06184 303 TSVQDAYNLGWKLAAVLAG--------APEALLDTYEEERRPVAAAVLGLSTEL 348 (502)
T ss_pred chHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653 236799999999999999888877653
No 28
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=332.85 Aligned_cols=367 Identities=19% Similarity=0.194 Sum_probs=233.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+... + .++..++++++++|+++ |+++++.+.+.....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~-~--~Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~-- 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV-G--SRAGGLHARTLEVLDQR--GIADRFLAQGQVAQV-- 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-C--cceeeECHHHHHHHHHc--CcHHHHHhcCCcccc--
Confidence 3589999999999999999999999999999997643211 1 12467999999999999 789988765422110
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcEEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (645)
..+ . ...++... ....+++.+.+.+..+++.|.+.+.. ..+++++++++++++++++.+++.+|+++++
T Consensus 75 ~~~-----~--~~~~~~~~--~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 145 (488)
T PRK06834 75 TGF-----A--ATRLDISD--FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRA 145 (488)
T ss_pred cee-----e--eEeccccc--CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 000 0 11111111 11223556788999999999887642 3588999999999999999999988889999
Q ss_pred cEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecC-CCeEEEEEEEeCCCC
Q 006440 234 DLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAFHKEPAG 311 (645)
Q Consensus 234 ~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 311 (645)
|+||+|||.+|.||+.+. ......|.+.. +...... .... .+..+..+...+...+.. ++.+.+.+....+
T Consensus 146 ~~vVgADG~~S~vR~~lgi~~~g~~~~~~~-~~~dv~~--~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 218 (488)
T PRK06834 146 QYLVGCDGGRSLVRKAAGIDFPGWDPTTSY-LIAEVEM--TEEP--EWGVHRDALGIHAFGRLEDEGPVRVMVTEKQV-- 218 (488)
T ss_pred CEEEEecCCCCCcHhhcCCCCCCCCcceEE-EEEEEEe--cCCC--CcceeeCCCceEEEeccCCCCeEEEEEecCCC--
Confidence 999999999999999983 44455555432 2221111 1111 111222333333333443 4444433332211
Q ss_pred CCCCCcchHHHHHHHHcCCC-hhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 312 GVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
... .....+++.+.+.... ..+. .........+.. ....+.+|..|||+|+|||||.++|++|||||+||+||
T Consensus 219 ~~~-~~~~~~~~~~~l~~~~g~~~~----~~~~~~~~~~~~-~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA 292 (488)
T PRK06834 219 GAT-GEPTLDDLREALIAVYGTDYG----IHSPTWISRFTD-MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDA 292 (488)
T ss_pred CCC-CCCCHHHHHHHHHHhhCCCCc----cccceeEEeccc-cceecccccCCcEEEEeeccccCCccccccccccHHHH
Confidence 111 1112233333222211 1110 001111111221 12346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCcc
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (645)
.+|+|+|+..+++ ...+.+|++|+++|++++..++..+..+. .++. .......+|+..+.+....
T Consensus 293 ~nLawkLa~vl~g-------~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~-------~~~~-~~~~~~~lR~~~~~~~~~~ 357 (488)
T PRK06834 293 VNLGWKLAQVVKG-------TSPESLLDTYHAERHPVAARVLRNTMAQV-------ALLR-PDDRTEALRDIVAELLGMD 357 (488)
T ss_pred HHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhc-CChHHHHHHHHHHHHhcCc
Confidence 9999999998764 12478999999999999998776654332 1233 3444677888777655544
Q ss_pred c-ceeeeeccchhhhHh
Q 006440 471 G-GRFFIDLAMPLMLSW 486 (645)
Q Consensus 471 ~-~~~~~~~~~~~~~~~ 486 (645)
+ ++.+++.++++.+.+
T Consensus 358 ~~~~~~~~~~~g~~~~y 374 (488)
T PRK06834 358 EPRKRIAAMMSGLDIHY 374 (488)
T ss_pred HHHHHHHHHHhcCCccc
Confidence 3 355556555554443
No 29
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=309.31 Aligned_cols=336 Identities=35% Similarity=0.483 Sum_probs=233.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
+.+|+|||||++|+++|+.|+|.|++|+|+|++ ...+..|. ++.+.-+++++|+++ ++.+.+...+.....++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~-e~~R~~g~---si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v- 74 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESR-EDPRGEGT---SINLALNGWRALKAI--GLKEQIREQGIPLGGRV- 74 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeec-cccccCCc---ceeehhhHHHHHHHc--ccHHHHHHhcCccccee-
Confidence 358999999999999999999999999999995 44444443 677888899999999 68888888776554443
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCc------eEEEEEeeCCeEEEEEcCCcE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQC 230 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~v~v~~~~g~~ 230 (645)
.....+++....+....+... ...++.|..++.+|.++++...++++. ....++..+....+++.+|.+
T Consensus 75 -~~~~~sg~~~~~~~~~~~~~~----i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~ 149 (420)
T KOG2614|consen 75 -LIHGDSGKEVSRILYGEPDEY----ILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTT 149 (420)
T ss_pred -eeecCCCCeeEecccCCchHH----HHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcE
Confidence 234445555555543332211 123567777888888888766677664 455555566667789999999
Q ss_pred EeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+++|++|||||++|.||++++... +.|..+.+|.++. +.+...+. ....+...+..+..-+.+.....|+++...+-
T Consensus 150 ~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~ 226 (420)
T KOG2614|consen 150 VKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSL 226 (420)
T ss_pred EEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCc
Confidence 999999999999999999995443 8888888998886 44443332 22233333333444445555555555553332
Q ss_pred CC-----CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCC----cccCCcEEEEccccCcCCCCCcc
Q 006440 311 GG-----VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF----TWGRGRVTLLGDSVHAMQPNLGQ 381 (645)
Q Consensus 311 ~~-----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~rvvLvGDAAH~~~P~~Gq 381 (645)
.. .+.++..+....+..+.|...+.+++..+..+.+...++..+.|.+ ....++|+|+|||||+|.|+.||
T Consensus 227 t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQ 306 (420)
T KOG2614|consen 227 TSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQ 306 (420)
T ss_pred ccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccc
Confidence 21 1123333444566777888888888888888777776676665542 23457899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhh--------HHHHHHHHHHHhhhH
Q 006440 382 GGCMAIEDGYQLAVELEKACKKSNESKTPID--------IVSALKSYERARRLR 427 (645)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~--------~~~~L~~Y~~~R~~~ 427 (645)
|+|+||+|+.+|+++|.++.+.-.+.+.... .+.++..|..+|+-+
T Consensus 307 G~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r 360 (420)
T KOG2614|consen 307 GGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRR 360 (420)
T ss_pred cccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998762111111111 556777777777444
No 30
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=336.10 Aligned_cols=368 Identities=18% Similarity=0.192 Sum_probs=236.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc-CCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
+++||+||||||+|+++|+.|+++|++|+|+|+.+.+.. .....+..+.++++++++|+++ |+++++...+......
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL--GAWDRIPEDEISPLRD 79 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC--CChhhhccccCCccce
Confidence 368999999999999999999999999999999864311 0111122567899999999999 7888776543222112
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
+. +.++.. .....++.. .......++.++|..|.+.|.+.+. ...++++++|++++.+++.+.|++++|+++
T Consensus 80 ~~-~~~~~~-~~~~~~~~~---~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (392)
T PRK09126 80 AK-VLNGRS-PFALTFDAR---GRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRL 154 (392)
T ss_pred EE-EEcCCC-CceeEeehh---hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEE
Confidence 11 222221 112222210 0111234678899999999988752 245889999999998888899999999999
Q ss_pred eccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+||+||+|||.+|.+|+.+. ......|.. ..+......... .......|++.+..++.+|..++.++|++......
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 231 (392)
T PRK09126 155 TARLLVAADSRFSATRRQLGIGADMHDFGR-TMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQ 231 (392)
T ss_pred EeCEEEEeCCCCchhhHhcCCCccccccCC-eEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHH
Confidence 99999999999999999984 222333433 223222221111 11223345566666777788877766665432110
Q ss_pred CC---CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 311 GG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 311 ~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
.. ....+...+.+.+.|..+.... ... .....+++.. ....+|..+|++|+|||||.++|++|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai 304 (392)
T PRK09126 232 IEALLALDPEAFAAEVTARFKGRLGAM----RLV--SSRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGL 304 (392)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhhccCe----EEc--CCCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhH
Confidence 00 0000111112222222211100 000 0111222221 224578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCC
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (645)
+||..|+++|..+++.+ .+...+++|+.|+++|++++..++..++.+. .++.....+.+.+|+..+...
T Consensus 305 ~da~~la~~L~~~~~~~----~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~ 373 (392)
T PRK09126 305 KGQDILARLILAAARRG----QDIGAASLLERYERKHRLATRPLYHATNAIA-------ALYTDDRPPARLLRRAVLRAA 373 (392)
T ss_pred HHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCchHHHHHHHHHHHHH
Confidence 99999999999876431 1223478999999999999998877776432 344555566788888887776
Q ss_pred Cccc
Q 006440 468 GRVG 471 (645)
Q Consensus 468 ~~~~ 471 (645)
++++
T Consensus 374 ~~~~ 377 (392)
T PRK09126 374 NRFP 377 (392)
T ss_pred hhCh
Confidence 6654
No 31
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-37 Score=336.33 Aligned_cols=332 Identities=19% Similarity=0.189 Sum_probs=218.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
++||+||||||+|+++|+.|+++|++|+|+|+.+.+... ..++.++++++++|+++ |+++++.+.+.... ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~-~~~ 74 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKALTLHPRTLEILDMR--GLLERFLEKGRKLP-SGH 74 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----cceeEecHHHHHHHHhc--CcHHHHHhhccccc-ceE
Confidence 479999999999999999999999999999998654322 23688999999999999 88898877553221 111
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEc--CC-cEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE--NG-QCY 231 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~--~g-~~i 231 (645)
+.... + ...+.. ....+++.+.++|..+++.|.+.+. ...+++++++++++++++++++++. +| +++
T Consensus 75 -~~~~~-~--~~~~~~----~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i 146 (493)
T PRK08244 75 -FAGLD-T--RLDFSA----LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTL 146 (493)
T ss_pred -Eeccc-c--cCCccc----CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEE
Confidence 11110 0 011111 1123455678999999999988653 2358889999999998888888775 45 479
Q ss_pred eccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+||+||+|||++|.||+.+. ......+.. ..+.+..... .........++.+...++.+|..++.+.|++......
T Consensus 147 ~a~~vVgADG~~S~vR~~lgi~~~g~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~ 223 (493)
T PRK08244 147 TSSYVVGADGAGSIVRKQAGIAFPGTDATF-TAMLGDVVLK--DPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERP 223 (493)
T ss_pred EeCEEEECCCCChHHHHhcCCCccCCCcce-EEEEEEEEec--CCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcc
Confidence 99999999999999999883 233333332 2222221111 1111112233455566777788877766654332211
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
..........+++.+.+..+.... +..........+.+. .....+|.+|||+|+|||||.++|++|||+|+||+||
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 299 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTD---FGLNDPVWMSRFGNA-TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDA 299 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCC---CCcCCeeEEEecccc-eeeHhhhccCcEEEeecceeccCCccccccccchhhH
Confidence 111111223455555444332110 000011111111111 1234689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 437 (645)
.+|+|+|+..+++. ..+.+|+.|+++|++++..++..++.
T Consensus 300 ~~La~~La~~l~g~-------~~~~lL~~Ye~eR~~~~~~~~~~~~~ 339 (493)
T PRK08244 300 MNLGWKLAAAIKGW-------APDWLLDSYHAERHPVGTALLRNTEV 339 (493)
T ss_pred HHHHHHHHHHHcCC-------CCchhhhhhHHHHHHHHHHHHHHhHH
Confidence 99999999987531 23578999999999999887766544
No 32
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=3.3e-36 Score=337.01 Aligned_cols=342 Identities=15% Similarity=0.188 Sum_probs=214.0
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
..++||+||||||+||++|+.|+++ |++|+|||+.+.+. ..| .+..++++++++|+++ |+++++.+.+....
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-~~g---rA~gl~prtleiL~~l--Gl~d~l~~~g~~~~- 102 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-ELG---QADGIACRTMEMFQAF--GFAERILKEAYWIN- 102 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCC---eeeEEChHHHHHHHhc--cchHHHHhhccccc-
Confidence 4478999999999999999999995 99999999986432 222 2578999999999999 89999987654222
Q ss_pred ccccccccCC--CceeeeccCC-C-chhhcCCCeEEeeCHHHHHHHHHHHcC---C-ceEEcCceEEEEEeeC---CeEE
Q 006440 154 RINGLVDGIS--GSWYIKFDTF-T-PAAEKGLPVTRVISRMTLQQILAKAVG---D-EIILNESNVIDFKDHG---DKVS 222 (645)
Q Consensus 154 ~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~i~~~~---~~v~ 222 (645)
.+. +++... .......... . ......++. ..++|..++++|.+.+. . ..+++++++++++.++ ..|+
T Consensus 103 ~~~-~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~ 180 (634)
T PRK08294 103 ETA-FWKPDPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT 180 (634)
T ss_pred ceE-EEcCCCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE
Confidence 111 122110 0111100000 0 001112343 57899999999988763 2 2478899999998764 3478
Q ss_pred EEEc------CC--cEEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccc--cceEEEecCceEEE
Q 006440 223 VVLE------NG--QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIES--VGYRVFLGHKQYFV 291 (645)
Q Consensus 223 v~~~------~g--~~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 291 (645)
|+++ +| ++++|||||||||++|.||+.+. ......+.....+..+... .++.. ....++.++...++
T Consensus 181 v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~--~~~p~~~~~~~~~~~~~g~~~ 258 (634)
T PRK08294 181 VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV--TDFPDIRLKCAIQSASEGSIL 258 (634)
T ss_pred EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc--cCCCCcceEEEEecCCCceEE
Confidence 8875 35 58999999999999999999983 3333444433222222111 11111 11123334555666
Q ss_pred EeecCCCe-EEEEEEEeC-C-CCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccC--CCCCc-------
Q 006440 292 SSDVGAGK-MQWYAFHKE-P-AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPIFT------- 359 (645)
Q Consensus 292 ~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~------- 359 (645)
.+|..++. +++++.... + ...........+.+.+.+..+..+. ......+..|.++.. ..+.+
T Consensus 259 ~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~-----~~~~~~v~w~s~y~i~~r~a~~f~~~~~~ 333 (634)
T PRK08294 259 LIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPY-----TLDVKEVAWWSVYEVGQRLTDRFDDVPAE 333 (634)
T ss_pred EEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCC-----CCceeEEeEEecccccceehhhccccccc
Confidence 67777764 444433211 1 1111112233444544433221100 000011222222221 11112
Q ss_pred ---ccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 006440 360 ---WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (645)
Q Consensus 360 ---~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 436 (645)
|..|||+|+|||||+++|.+|||||+||+||.+|+|+|+.++++. ..+++|+.|+++|+++++.++++++
T Consensus 334 ~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-------a~~~lL~tYe~ERrp~a~~li~~~~ 406 (634)
T PRK08294 334 EAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-------SPPELLHTYSAERQAIAQELIDFDR 406 (634)
T ss_pred ccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999987642 3468999999999999999888876
Q ss_pred HHH
Q 006440 437 SAA 439 (645)
Q Consensus 437 ~~~ 439 (645)
...
T Consensus 407 ~~~ 409 (634)
T PRK08294 407 EWS 409 (634)
T ss_pred HHH
Confidence 543
No 33
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.2e-36 Score=325.21 Aligned_cols=359 Identities=20% Similarity=0.203 Sum_probs=228.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
||+||||||+|+++|+.|+++| ++|+|+|+.+.+....+....++.++++++++|+++ |+++++...+... ..+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~-~~~~- 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL--GLWPKLAPFATPI-LDIH- 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC--CChhhhHhhcCcc-ceEE-
Confidence 7999999999999999999999 999999998654332221123578999999999999 7888876654322 1221
Q ss_pred cccc-CCCceeeeccCCCchhhcC-CCeEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 158 LVDG-ISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
+.+. ..+. ..+.. .+.+ .+.++.++|..|.+.|.+.+.. ..++++++|++++.++++++|++++|++++
T Consensus 77 ~~~~~~~~~--~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 150 (382)
T TIGR01984 77 VSDQGHFGA--THLRA----SEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLR 150 (382)
T ss_pred EEcCCCCce--EEech----hhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 1111 1111 11111 1111 1236789999999999998643 358889999999988889999999998999
Q ss_pred ccEEEEccCCchhhhhhhcCC-CCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCC-eEEEEEEEeCCC
Q 006440 233 GDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPA 310 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 310 (645)
||+||+|||.+|.+|+.+... ....|.+ .++........ ......+..+. .+..+..+|..++ .+.+++......
T Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~ 227 (382)
T TIGR01984 151 AKLLIAADGANSKVRELLSIPTEEHDYNQ-TALIANIRHEQ-PHQGCAFERFT-PHGPLALLPLKDNYRSSLVWCLPSKQ 227 (382)
T ss_pred eeEEEEecCCChHHHHHcCCCCcccccCC-EEEEEEEEecC-CCCCEEEEeeC-CCCCeEECcCCCCCCEEEEEECCHHH
Confidence 999999999999999998432 2333433 33333322111 11122223333 3334555677666 444444322110
Q ss_pred CC--CC-CCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 311 GG--VD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 311 ~~--~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
.. .. ..+...+.+.+.+. +.+.+ +... .....+++.. ....+|..+||+|||||||.++|++|||+|+||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al 300 (382)
T TIGR01984 228 ADTIANLPDAEFLAELQQAFG---WRLGK-ITQV--GERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGL 300 (382)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hhccC-eEEc--CCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhH
Confidence 00 00 00111122222221 11111 0111 1112223332 235678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCC
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (645)
+||..|+++|..... +...+.+|+.|+++|++++..++.++..+. .+|......+..+|+..+...
T Consensus 301 ~Da~~La~~L~~~~~-------~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~ 366 (382)
T TIGR01984 301 RDVETLAEVLIDARI-------DLGTYALLQEYLRRRQFDQFITIGLTDGLN-------RLFSNHIPLLRALRNLGLLAL 366 (382)
T ss_pred HHHHHHHHHHHHhcc-------CccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHH
Confidence 999999999987531 123468999999999999988877765432 334444555677888777666
Q ss_pred Cccc
Q 006440 468 GRVG 471 (645)
Q Consensus 468 ~~~~ 471 (645)
.+++
T Consensus 367 ~~~p 370 (382)
T TIGR01984 367 ENFP 370 (382)
T ss_pred hcCH
Confidence 5543
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=324.36 Aligned_cols=375 Identities=17% Similarity=0.194 Sum_probs=238.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccC-CCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
.+||+||||||+|+++|+.|++.|++|+|+|+.+..... .+.....+.++++++++|+.+ |+++++..........+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL--GVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc--CchhhhhhhcCCcceEE
Confidence 579999999999999999999999999999998654321 111223477999999999999 78887754332221222
Q ss_pred ccccccCCCceeeeccCCCchhhcCCC-eEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
. +.....+ .+.+... ..+.| ..+.++|..|.+.|.+.+.. ..++ +.++++++.+++.+.|++.+|+++
T Consensus 83 ~-~~~~~~~--~~~~~~~----~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~ 154 (388)
T PRK07608 83 R-VFGDAHA--RLHFSAY----QAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVL 154 (388)
T ss_pred E-EEECCCc--eeEeecc----ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEE
Confidence 1 2221111 1222111 11222 35689999999999887632 3456 899999998888999999999889
Q ss_pred eccEEEEccCCchhhhhhhcCC-CCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 232 AGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+||+||+|||.+|.+|+.+... ....|.+. ++...... +..... ....|+.++..++.+|.+++.+.+++......
T Consensus 155 ~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 231 (388)
T PRK07608 155 RADLVVGADGAHSWVRSQAGIKAERRPYRQT-GVVANFKA-ERPHRG-TAYQWFRDDGILALLPLPDGHVSMVWSARTAH 231 (388)
T ss_pred EeeEEEEeCCCCchHHHhcCCCccccccCCE-EEEEEEEe-cCCCCC-EEEEEecCCCCEEEeECCCCCeEEEEECCHHH
Confidence 9999999999999999988432 23344432 22222211 111111 12344556666677788777665543321110
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
. ........+.+.+.+..+.......+...... ..+++. ......|..+|++|||||||.++|++|||+|+||+||
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da 307 (388)
T PRK07608 232 A-DELLALSPEALAARVERASGGRLGRLECVTPA--AGFPLR-LQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDV 307 (388)
T ss_pred H-HHHHCCCHHHHHHHHHHHHHHhcCCceecCCc--ceeecc-hhhhhhhhcCceEEEeccccccCCccccccchhHHHH
Confidence 0 00000012233333322211110111111010 112221 1234678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCcc
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (645)
.+|+++|...... .+....++|+.|+++|++++..++..++. +..+|..+..+...+|+..+...+.+
T Consensus 308 ~~La~~L~~~~~~-----~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~ 375 (388)
T PRK07608 308 AALADVLAGREPF-----RDLGDLRLLRRYERARREDILALQVATDG-------LQRLFALPGPLARWLRNAGMALVGAL 375 (388)
T ss_pred HHHHHHHHHhhcc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhhC
Confidence 9999999875321 01123479999999999999988766654 33456666777888999888877766
Q ss_pred c--ceeeeeccc
Q 006440 471 G--GRFFIDLAM 480 (645)
Q Consensus 471 ~--~~~~~~~~~ 480 (645)
+ +++++++++
T Consensus 376 ~~~~~~~~~~~~ 387 (388)
T PRK07608 376 PLVKRWLVRHAL 387 (388)
T ss_pred hHHHHHHHHHhc
Confidence 5 366666654
No 35
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.3e-36 Score=321.30 Aligned_cols=341 Identities=27% Similarity=0.279 Sum_probs=204.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
++||+||||||+|+++|+.|+++|++|+|+|+++.+.... .++.+.++++++|+.+ |+++.+............
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~----~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~ 74 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG----RGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRI 74 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS----SSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc----cccccccccccccccc--cchhhhhhhcccccceee
Confidence 3699999999999999999999999999999986543322 2678999999999999 788888876532211110
Q ss_pred cccccCCCc--eee-eccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcC---C
Q 006440 157 GLVDGISGS--WYI-KFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN---G 228 (645)
Q Consensus 157 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~---g 228 (645)
.+.....+. +.. .............+....+.|..|++.|.+.+. ...+++++++++++++++++.+.+.+ |
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g 154 (356)
T PF01494_consen 75 FFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDG 154 (356)
T ss_dssp EEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTC
T ss_pred EeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCC
Confidence 011110000 000 000000011223345678999999999998852 24589999999999999987766643 3
Q ss_pred --cEEeccEEEEccCCchhhhhhhcCCCC-CcccCeEEEEEEeccCCC-CccccceEEEecCceEEEEeecCC-CeEEEE
Q 006440 229 --QCYAGDLLIGADGIWSKVRKNLFGPQE-AIYSGYTCYTGIADFVPA-DIESVGYRVFLGHKQYFVSSDVGA-GKMQWY 303 (645)
Q Consensus 229 --~~i~a~lvVgADG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 303 (645)
++++||+||||||++|.||+.+..... ..+.....+..+...... +.....+.....+...+..+|..+ ....++
T Consensus 155 ~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 234 (356)
T PF01494_consen 155 EEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFV 234 (356)
T ss_dssp EEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred ceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEE
Confidence 379999999999999999999843211 111111122222111111 111112223334444445566655 333343
Q ss_pred EEEeCCCC-CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcch
Q 006440 304 AFHKEPAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (645)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG 382 (645)
+....... .........+.+.+.+... ...............+++.. ....+|.+|||+|||||||.|+|++|||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG 310 (356)
T PF01494_consen 235 WFLPFDESKEERPEEFSPEELFANLPEI---FGPDLLETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQG 310 (356)
T ss_dssp EEEETTTTTCCSTHCHHHHHHHHHHHHH---HHTCHHHHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHH
T ss_pred Eeeecccccccccccccccccccccccc---cccccccccccccccccccc-ccccccccceeEEeccceeeecccccCC
Confidence 33332221 1111222233333332211 11000011111122222222 2345788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHH
Q 006440 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 434 (645)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 434 (645)
+|+||+||..|+++|....++ ...+++|+.|+++|++++..++++
T Consensus 311 ~n~Ai~da~~La~~L~~~~~g-------~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 311 INMAIEDAAALAELLAAALKG-------EASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999988653 234789999999999999877654
No 36
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=2.7e-36 Score=322.92 Aligned_cols=364 Identities=21% Similarity=0.252 Sum_probs=231.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccC-CCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
||+||||||+|+++|+.|+++|++|+|+|+.+.+... .+...+++.+++++++.|+++ |+++++.+........+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~~~~- 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL--GVWDKIEPDRAQPIRDIH- 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC--CchhhhhhhcCCCceEEE-
Confidence 7999999999999999999999999999998754321 111223578999999999999 788888762222222222
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEEEEEcCCcEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 234 (645)
+++.. +.....++.. .......++.++|..|.+.|.+.+.. ..++++++|++++.+++++.+++++|+++++|
T Consensus 78 ~~~~~-~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~ 153 (385)
T TIGR01988 78 VSDGG-SFGALHFDAD---EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRAR 153 (385)
T ss_pred EEeCC-CCceEEechh---hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEee
Confidence 22221 1111222210 01112346789999999999987632 45889999999998888999999999999999
Q ss_pred EEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCC-
Q 006440 235 LLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG- 312 (645)
Q Consensus 235 lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (645)
+||+|||.+|.+|+.+. ......|.. .++........ ......+..+ .++..++.+|..++...|.+........
T Consensus 154 ~vi~adG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (385)
T TIGR01988 154 LLVGADGANSKVRQLAGIPTTGWDYGQ-SAVVANVKHER-PHQGTAWERF-TPTGPLALLPLPDNRSSLVWTLPPEEAER 230 (385)
T ss_pred EEEEeCCCCCHHHHHcCCCccccccCC-eEEEEEEEecC-CCCCEEEEEe-cCCCCEEEeECCCCCeEEEEECCHHHHHH
Confidence 99999999999999984 333334433 22322222111 1111222223 3344556677777766655543211000
Q ss_pred --CCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 313 --VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 313 --~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
....+...+.+.+.+..+.+. +... .....+++.. ....+|..+||+|+|||||.++|++|||+|+||+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da 303 (385)
T TIGR01988 231 LLALSDEEFLAELQRAFGSRLGA----ITLV--GERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDV 303 (385)
T ss_pred HHcCCHHHHHHHHHHHHhhhcCc----eEec--cCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHHH
Confidence 001111122222222222111 0000 1111122222 234578999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCcc
Q 006440 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (645)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (645)
..|++.|.+.+..+ .+.....+|+.|+++|++++..++.+++... .++.........+|++.+.....+
T Consensus 304 ~~La~~L~~~~~~~----~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~ 372 (385)
T TIGR01988 304 AALAEVLEDARRRG----EDIGSPRVLQRYERRRRFDNAAMLGATDGLN-------RLFSNDFPPLRLLRNLGLRLLNLL 372 (385)
T ss_pred HHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCCcHHHHHHHHHHHHHhhC
Confidence 99999999875431 1123478999999999999998888776533 233444555667777666555443
No 37
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=319.89 Aligned_cols=333 Identities=15% Similarity=0.161 Sum_probs=210.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+.. .+ .+..++++++++|+.+ |+++++...+..... .
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~-~g---ra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~~-~ 76 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE-VG---RADALNARTLQLLELV--DLFDELYPLGKPCNT-S 76 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc-cc---cceEeCHHHHHHHHhc--ChHHHHHhhCcccee-E
Confidence 458999999999999999999999999999999865432 22 3577999999999999 888888765432211 1
Q ss_pred ccccccCCCceeeecc-CCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 156 NGLVDGISGSWYIKFD-TFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
. ++. .+....... .........++..+.+.+..+++.|.+++.. ..++++++|++++.+++++.+++.+|++++
T Consensus 77 ~-~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~ 153 (487)
T PRK07190 77 S-VWA--NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQ 153 (487)
T ss_pred E-Eec--CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEE
Confidence 1 111 111111000 0000011123344678999999999876532 358889999999999999988888888999
Q ss_pred ccEEEEccCCchhhhhhhc-CCCCCcccCeEEEE-EEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCC
Q 006440 233 GDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYT-GIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
|++||+|||.+|.||+.+. +.....+....... .......++. .....+..+...++.+|..++...++... +.
T Consensus 154 a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~ 229 (487)
T PRK07190 154 SRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKV--PEIIVFQAETSDVAWIPREGEIDRFYVRM--DT 229 (487)
T ss_pred eCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCC--cceEEEEcCCCCEEEEECCCCEEEEEEEc--CC
Confidence 9999999999999999983 33333332211111 1111100110 11122323333344455555544433321 11
Q ss_pred CCCCCCcchHHHHHHHHcC-CChhHHHHHHcCCccceeecccccCCCCCccc-CCcEEEEccccCcCCCCCcchhhHHHH
Q 006440 311 GGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~rvvLvGDAAH~~~P~~GqG~n~al~ 388 (645)
.....+++.+.+.. ..+.. +.-........+++.. ..+.+|. .|||+|+|||||.++|++|||||+||+
T Consensus 230 -----~~~t~~~~~~~l~~~~~~~~---~~~~~~~w~s~~~~~~-r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq 300 (487)
T PRK07190 230 -----KDFTLEQAIAKINHAMQPHR---LGFKEIVWFSQFSVKE-SVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA 300 (487)
T ss_pred -----CCCCHHHHHHHHHHhcCCCC---CceEEEEEEEEeeeCc-EehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence 11112222222211 11100 0000011112222222 3356786 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006440 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (645)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 438 (645)
||.+|+|+|+.++++. ..+.+|++|+++|++.+..+...++.+
T Consensus 301 DA~nL~wkLa~v~~g~-------a~~~lLdtY~~eR~p~a~~vl~~t~~~ 343 (487)
T PRK07190 301 DAFNLIWKLNMVIHHG-------ASPELLQSYEAERKPVAQGVIETSGEL 343 (487)
T ss_pred HHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887652 237899999999999999887777644
No 38
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=329.00 Aligned_cols=339 Identities=20% Similarity=0.241 Sum_probs=209.7
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
...+||+||||||+|+++|+.|+++|++|+|+|+.+..... .+++.++++++++|+++ |+++++.+.+......
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~~ 78 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKANTTSARSMEHFRRL--GIADEVRSAGLPVDYP 78 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----CccccCCHHHHHHHHhc--ChHHHHHhhcCCcccc
Confidence 45689999999999999999999999999999987543322 23577999999999999 8999988765322110
Q ss_pred cc-cccccCCCceeeeccCCCchh----------hcCCC-eEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCC
Q 006440 155 IN-GLVDGISGSWYIKFDTFTPAA----------EKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGD 219 (645)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~ 219 (645)
.. .+.....+.....++...... ....+ ..+.++|..|++.|.+.+. ...++++++|++++.+++
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 79 TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD 158 (545)
T ss_pred CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC
Confidence 00 011111122121111100000 00111 2467899999999998763 346899999999999888
Q ss_pred eEEEEEc---CCc--EEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEecc--CCCCc-cccc-eEEEecCceE
Q 006440 220 KVSVVLE---NGQ--CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADF--VPADI-ESVG-YRVFLGHKQY 289 (645)
Q Consensus 220 ~v~v~~~---~g~--~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~ 289 (645)
++++++. +|+ ++++|+||+|||++|.||+.+. ......+.+... ...... ..... .... ..++.+++..
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 237 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDL-SIYIRAPGLAALVGHDPAWMYWLFNPDRR 237 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEE-EEEEEcCchHHHhcCCCceEEEEECCCcc
Confidence 8887764 353 6899999999999999999983 222333332221 111111 00111 1112 2334455444
Q ss_pred EEEeecCCCeEEEEEE-EeCCCCCCCCCcchHHHHHHHHcCCC-hhHHHHHHcCCccceeecccccCCCCCcccCCcEEE
Q 006440 290 FVSSDVGAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTL 367 (645)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 367 (645)
.++.+..+.. .|.+. ........ ....+.+.+.+.... ..+. ........|. .....+.+|..|||+|
T Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~w~-~~~~~a~~~~~gRv~L 307 (545)
T PRK06126 238 GVLVAIDGRD-EWLFHQLRGGEDEF---TIDDVDARAFVRRGVGEDID-----YEVLSVVPWT-GRRLVADSYRRGRVFL 307 (545)
T ss_pred EEEEEECCCC-eEEEEEecCCCCCC---CCCHHHHHHHHHHhcCCCCC-----eEEEeecccc-hhheehhhhccCCEEE
Confidence 4444443333 34433 22111111 111122222221110 0000 0000111122 2234456899999999
Q ss_pred EccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006440 368 LGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (645)
Q Consensus 368 vGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 437 (645)
+|||||.|+|++|||+|+||+||.+|+|+|+..+++ ...+.+|+.|+++|++++..++..+..
T Consensus 308 ~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-------~~~~~lL~~Y~~eR~p~~~~~~~~s~~ 370 (545)
T PRK06126 308 AGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-------WAGPALLDSYEAERRPIAARNTDYARR 370 (545)
T ss_pred echhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-------CCcHHHHhhhHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999987643 123689999999999999998887764
No 39
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=2.8e-35 Score=315.00 Aligned_cols=339 Identities=17% Similarity=0.161 Sum_probs=206.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
.+||+||||||+|+++|+.|+++|++|+|+|+.+..... +.. ++..+.++++++|+++ |+++++...+... ..+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~-~a~~l~~~~~~~l~~l--Gl~~~l~~~~~~~-~~~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVE-GRI-RAGVLEQGTVDLLREA--GVGERMDREGLVH-DGIE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccc-ccc-ceeEECHhHHHHHHHc--CChHHHHhcCCcc-CcEE
Confidence 479999999999999999999999999999998643111 111 1345899999999999 7899987755422 2222
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEe-eCCeEEEEE-cCCc--E
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVL-ENGQ--C 230 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~-~~~~v~v~~-~~g~--~ 230 (645)
+.+. +. ...++.. ...+.+....+.|..|.+.|.+.+. ...+++++++++++. +++.+.|++ .+|+ +
T Consensus 77 -~~~~--g~-~~~~~~~---~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~ 149 (392)
T PRK08243 77 -LRFD--GR-RHRIDLT---ELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR 149 (392)
T ss_pred -EEEC--CE-EEEeccc---cccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE
Confidence 1221 11 1222211 1111222346678888888876542 235888999999987 667777887 4664 6
Q ss_pred EeccEEEEccCCchhhhhhhcCCCCCcccCe--EEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeC
Q 006440 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (645)
++||+||||||.+|.||+.+.......|... ..|.++....++.. ...........+.+.++.+.+...+++....
T Consensus 150 i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVS--DELIYANHERGFALCSMRSPTRSRYYLQCPL 227 (392)
T ss_pred EEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCC--CceEEeeCCCceEEEecCCCCcEEEEEEecC
Confidence 8999999999999999999843322233322 23443322222111 1111222333344444434443344433322
Q ss_pred CCCCC-CCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 309 PAGGV-DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 309 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
..... ...+...+.+.+.+..+.. ..+..........++ .......+|..|||+|||||||.++|++|||+|+||
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 228 DDKVEDWSDERFWDELRRRLPPEDA---ERLVTGPSIEKSIAP-LRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred CCCcccCChhHHHHHHHHhcCcccc---cccccCcccccccee-eeeceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 11111 1111222334444433210 000000000000001 111234578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 441 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 441 (645)
+||.+|+++|.+.++. +.+++|+.|+++|++++..++.++..+..+
T Consensus 304 ~Da~~La~~L~~~~~~--------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~ 349 (392)
T PRK08243 304 SDVRYLARALVEFYRE--------GDTALLDAYSATALRRVWKAERFSWWMTSM 349 (392)
T ss_pred HHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 136899999999999999888887654433
No 40
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=6.8e-36 Score=320.85 Aligned_cols=374 Identities=18% Similarity=0.248 Sum_probs=234.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeccCcc-ccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~---g~~~~~~~~~~~~-~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~ 151 (645)
+.+||+||||||+|+++|+.|+++ |++|+|+|+..+. ....+....++.+.++++++|+++ |+++++...+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~ 79 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL--GVWQALADCATPI 79 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC--CChhhhHhhcCCc
Confidence 568999999999999999999998 9999999995322 111221123578999999999999 7888887654321
Q ss_pred ccccccccc-cCCCceeeeccCCCchhhcCCC-eEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEc
Q 006440 152 GDRINGLVD-GISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE 226 (645)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~ 226 (645)
..+. +.+ +..+. ..+. ....+.+ .++.++|..|.+.|.+.+. ...++++++|+++..+++++.|+++
T Consensus 80 -~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~ 151 (395)
T PRK05732 80 -THIH-VSDRGHAGF--VRLD----AEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD 151 (395)
T ss_pred -cEEE-EecCCCCce--EEee----hhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC
Confidence 1111 111 11111 1111 1112222 3568899999999988753 2357889999999988888999999
Q ss_pred CCcEEeccEEEEccCCchhhhhhhcCCC-CCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEE
Q 006440 227 NGQCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (645)
Q Consensus 227 ~g~~i~a~lvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (645)
+|.++++|+||+|||.+|.||+.+.... ...+.+ .++........ ......+..+...+ .+..+|..++...+++.
T Consensus 152 ~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~p~~~g~~~~~~~ 228 (395)
T PRK05732 152 DGETLTGRLLVAADGSHSALREALGIDWQQHPYEQ-VAVIANVTTSE-AHQGRAFERFTEHG-PLALLPMSDGRCSLVWC 228 (395)
T ss_pred CCCEEEeCEEEEecCCChhhHHhhCCCccceecCC-EEEEEEEEecC-CCCCEEEEeecCCC-CEEEeECCCCCeEEEEE
Confidence 9988999999999999999999884322 233333 33333322111 11112222233333 35556777777655544
Q ss_pred EeCCCC---CCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcch
Q 006440 306 HKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (645)
Q Consensus 306 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG 382 (645)
...... .........+.+.+.+ .|. ... +.... ....+++.. ....+|..+|++|+|||||.++|++|||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~~--~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG 301 (395)
T PRK05732 229 HPLEDAEEVLSWSDAQFLAELQQAF-GWR--LGR-ITHAG--KRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQG 301 (395)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHH-Hhh--hcc-eeecC--Ccceecccc-cchhhhccCcEEEEeecccccCCccccc
Confidence 321100 0000011112222222 110 000 00000 111122222 2345788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhc
Q 006440 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKF 462 (645)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~ 462 (645)
+|+||+||.+|+++|...+... .+....++|+.|+++|++++..++.+++. +..+|..+..++..+|+.
T Consensus 302 ~~~al~Da~~La~~L~~~~~~~----~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~ 370 (395)
T PRK05732 302 FNLGLRDVMSLAETLTQALARG----EDIGDYAVLQRYQQRRQQDREATIGFTDG-------LVRLFANRWAPLVVGRNL 370 (395)
T ss_pred cchHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCChHHHHHHHH
Confidence 9999999999999998876431 11223589999999999999877766654 234455555677888998
Q ss_pred ccCCCCccc--ceeeeeccc
Q 006440 463 RIPHPGRVG--GRFFIDLAM 480 (645)
Q Consensus 463 ~l~~~~~~~--~~~~~~~~~ 480 (645)
.+..++.++ +++++++++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~ 390 (395)
T PRK05732 371 GLMAMDLLPPARDWLARRTL 390 (395)
T ss_pred HHHHHccCHHHHHHHHHHHh
Confidence 887777655 355555544
No 41
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=3.3e-35 Score=327.25 Aligned_cols=333 Identities=18% Similarity=0.215 Sum_probs=210.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+.+..... ..++.++++++++|+++ |+++++.+.+......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~- 94 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG- 94 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece-
Confidence 4689999999999999999999999999999998643221 23678999999999999 7888887665321111
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEc--CCc-
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NGQ- 229 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~--~g~- 229 (645)
..+... .....++... .....++....+.|..|++.|.+.+. ...+++++++++++.+++++++++. +|.
T Consensus 95 ~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~ 170 (547)
T PRK08132 95 KVFLRD---EEVYRFDLLP-EPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPY 170 (547)
T ss_pred eEEeCC---CeEEEecCCC-CCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcE
Confidence 111111 1122222111 11122333456899999999988763 2458899999999998888877764 443
Q ss_pred EEeccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEe---cCceEEEEeecCCCeEEEEEE
Q 006440 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFL---GHKQYFVSSDVGAGKMQWYAF 305 (645)
Q Consensus 230 ~i~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 305 (645)
++++|+||+|||.+|.||+.+. ......|.....+..+. ...+.....+..+. .++..++.++.+.+.+.+.+.
T Consensus 171 ~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (547)
T PRK08132 171 TLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVK--MKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQ 248 (547)
T ss_pred EEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEE--ecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEe
Confidence 6999999999999999999884 23334443322222111 11111111222221 234445555555544333222
Q ss_pred EeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeeccc--ccCCCCCcccCCcEEEEccccCcCCCCCcchh
Q 006440 306 HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI--YDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 383 (645)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~ 383 (645)
..... ... .....+.+.+ .+.+.+.......+..... .....+.+|..|||+|+|||||.++|++|||+
T Consensus 249 ~~~~~-~~~-~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~ 319 (547)
T PRK08132 249 LGWDA-DPE-AEKKPENVIP-------RVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGA 319 (547)
T ss_pred cCCCC-Cch-hhcCHHHHHH-------HHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccc
Confidence 11111 000 0011122222 2222222111111111111 12334678999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006440 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (645)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~ 437 (645)
|+||+||.+|+|+|+..+++. ..+++|+.|+++|+++++.++..+..
T Consensus 320 n~gi~DA~~LawkLa~vl~g~-------~~~~lL~~Ye~eR~p~~~~~~~~s~~ 366 (547)
T PRK08132 320 NSGIQDADNLAWKLALVLRGR-------APDSLLDSYASEREFAADENIRNSTR 366 (547)
T ss_pred cchHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887642 24789999999999999888776654
No 42
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=5.3e-35 Score=311.94 Aligned_cols=338 Identities=16% Similarity=0.204 Sum_probs=207.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
.+||+||||||+|+++|+.|+++|++|+|+|+.+..... +.. +...+.++++++|+++ |+++++...+... ..+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~-~~~-~a~~l~~~~~~~L~~l--Gl~~~l~~~~~~~-~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL-GRI-RAGVLEQGTVDLLREA--GVDERMDREGLVH-EGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC-Cce-eEeeECHHHHHHHHHC--CChHHHHhcCcee-cceE
Confidence 479999999999999999999999999999998642211 111 1234889999999999 8899987755322 2222
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEe-eCCeEEEEEc-CCc--E
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD-HGDKVSVVLE-NGQ--C 230 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~-~~~~v~v~~~-~g~--~ 230 (645)
+.++. ......++.. ..+.+ .....+..|.+.|.+.+.. ..++++.+++.+.. +++.+.|++. +|+ +
T Consensus 77 -~~~~~-~~~~~~~~~~----~~~~~-~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 77 -IAFDG-QRFRIDLKAL----TGGKT-VMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred -EeeCC-EEEEEecccc----CCCce-EEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 22211 1112222211 11111 1234577888888776522 34677888877755 5566778885 775 6
Q ss_pred EeccEEEEccCCchhhhhhhcCCCCCcccCe--EEEEEEeccCCCCccccceEEEecCceEEEEeecCCC-eEEEEEEEe
Q 006440 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHK 307 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 307 (645)
++||+||||||.+|.||+.+.......|.++ ..|.++....+... .. ..+.+.+..+...+..++ ...|++...
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVS--HE-LIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCC--Cc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 9999999999999999999744333334332 23455432212111 11 233344444444444332 223544332
Q ss_pred CCCCCCC-CCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHH
Q 006440 308 EPAGGVD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (645)
Q Consensus 308 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~a 386 (645)
....... ..+...+.+.+.+ .+.+.+.+...........++ ......+|..|||+|||||||.|+|+.|||+|+|
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~a 302 (390)
T TIGR02360 227 LTDKVEDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPL-RSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (390)
T ss_pred CCCChhhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeH-HhhccccCccCCEEEEEccccCCCCCcCCchhHH
Confidence 2111100 0111222333332 233333332221111111111 1223457889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006440 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 441 (645)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 441 (645)
|+||.+|+++|.+... .+...+|+.|++.|++++..+++.++.+..+
T Consensus 303 ieDA~~La~~L~~~~~--------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 349 (390)
T TIGR02360 303 ASDVHYLYEALLEHYQ--------EGSSAGIEGYSARALARVWKAERFSWWMTSL 349 (390)
T ss_pred HHHHHHHHHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986532 2347899999999999999999888765544
No 43
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1e-34 Score=317.20 Aligned_cols=341 Identities=14% Similarity=0.149 Sum_probs=214.6
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
....+||+||||||+|+++|+.|+++|++|+|+|+...... .+ .++.++|++.++|+++ |+++.+.........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~-~~---~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~~ 113 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE-RM---MGEFMQPGGRFMLSKL--GLEDCLEGIDAQKAT 113 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCc-cc---cccccCchHHHHHHHc--CCcchhhhccCcccc
Confidence 34568999999999999999999999999999999753221 11 2467999999999999 788877654332222
Q ss_pred ccccccccCCCce-eeeccCCCchhhcC-CCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCe---EEEEE
Q 006440 154 RINGLVDGISGSW-YIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK---VSVVL 225 (645)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~---v~v~~ 225 (645)
.+..+. .+.. ...++... .... .+.++.++|.+|.+.|.+++. +..++. .+++++..+++. +++..
T Consensus 114 ~~~v~~---~g~~~~~~~~~~~--~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~~~v~gV~~~~ 187 (514)
T PLN02985 114 GMAVYK---DGKEAVAPFPVDN--NNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEKGVIKGVTYKN 187 (514)
T ss_pred cEEEEE---CCEEEEEeCCCCC--cCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcCCEEEEEEEEc
Confidence 222111 1221 23333111 1111 234678999999999998763 334554 467777665553 33434
Q ss_pred cCCc--EEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEE
Q 006440 226 ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (645)
Q Consensus 226 ~~g~--~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (645)
.+|+ +++||+||+|||.+|.+|+.+.......+.....+. ... ... ........+++.+..++.++..++.+.++
T Consensus 188 ~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~l~ypi~~~~~~~~ 264 (514)
T PLN02985 188 SAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-SKN-CRL-EEPEKLHLIMSKPSFTMLYQISSTDVRCV 264 (514)
T ss_pred CCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-Ecc-ccC-CCCCcceEEcCCCceEEEEEeCCCeEEEE
Confidence 4665 467999999999999999999543332333222222 111 111 11222355667777778888888877666
Q ss_pred EEEeCCCCCCCCCcchHHHHHHHHcC-----CChhHHHHHHc-CCcc-ceeecccccCCCCCcccCCcEEEEccccCcCC
Q 006440 304 AFHKEPAGGVDGPEGKKERLLKIFEG-----WCDNVVDLILA-TDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQ 376 (645)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~ 376 (645)
+....+.... ....++.+.+.. +.+.+.+.+.. .++. .+...+... .+...|..+|++|||||||.++
T Consensus 265 ~~~~~~~~~~----~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~-l~~~~~~~~~vvLiGDAaH~~~ 339 (514)
T PLN02985 265 FEVLPDNIPS----IANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKR-MSATLSDKKGVIVLGDAFNMRH 339 (514)
T ss_pred EEEeCCCCCC----cChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccc-ccccccCCCCEEEEecccccCC
Confidence 5554321111 111223333222 22334443322 1111 122222221 2334566799999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006440 377 PNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (645)
Q Consensus 377 P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 438 (645)
|++|||||+||+||..|++.|...-. .....+..++|+.|+++|++++..++.+++..
T Consensus 340 P~~GQGmn~AleDA~vLa~lL~~~~~----~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al 397 (514)
T PLN02985 340 PAIASGMMVLLSDILILRRLLQPLSN----LGNANKVSEVIKSFYDIRKPMSATVNTLGNAF 397 (514)
T ss_pred CCccccHhHHHHHHHHHHHHhhhccc----ccchhHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999976311 01234567899999999999999998888654
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=6.1e-34 Score=312.18 Aligned_cols=342 Identities=19% Similarity=0.196 Sum_probs=213.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+|+........ ..+..+++++.++|+++ |+++.+...... ...+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r---~~G~~L~p~g~~~L~~L--GL~d~l~~i~~~-~~~~ 105 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDR---IVGELLQPGGVNALKEL--GMEECAEGIGMP-CFGY 105 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccch---hhhhhcCHHHHHHHHHC--CChhhHhhcCcc-eeee
Confidence 46899999999999999999999999999999975111110 11356899999999999 788887654432 1222
Q ss_pred ccccccCCCce-eeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc-----CCceEEcCceEEEEEeeCC-------eEE
Q 006440 156 NGLVDGISGSW-YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-----GDEIILNESNVIDFKDHGD-------KVS 222 (645)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~i~~~~~-------~v~ 222 (645)
. +.+. .+.. ...++ .+ ..++.+++..+.+.|.+.+ ++..++ ..+++++..++. +++
T Consensus 106 ~-v~~~-~G~~~~i~~~-------~~-~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~ 174 (567)
T PTZ00367 106 V-VFDH-KGKQVKLPYG-------AG-ASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVE 174 (567)
T ss_pred E-EEEC-CCCEEEecCC-------CC-CceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEE
Confidence 2 2221 1211 11111 11 1245678888988887765 223344 457888755433 355
Q ss_pred EEEcC-----------------------CcEEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEe-ccCCCCcccc
Q 006440 223 VVLEN-----------------------GQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DFVPADIESV 278 (645)
Q Consensus 223 v~~~~-----------------------g~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (645)
++..+ +++++||+||||||.+|.+|+.+.... +.+.....+.+.. .....+. ..
T Consensus 175 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~~lp~-~~ 252 (567)
T PTZ00367 175 YTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNVRLPK-EQ 252 (567)
T ss_pred EecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecccCCC-CC
Confidence 55544 568999999999999999999984322 2222223333331 1111111 12
Q ss_pred ceEEEecCceEEEEeecCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHHcC-CChhHHHHH-HcCCc-cceeecccccCC
Q 006440 279 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLI-LATDE-EAILRRDIYDRT 355 (645)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l-~~~~~-~~~~~~~~~~~~ 355 (645)
....|++++..++.+|+.++...+++.+..+.. . ......+.+.+.+.. +.+.+.+.+ ..... ..+..++... .
T Consensus 253 ~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~-p-~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~-~ 329 (567)
T PTZ00367 253 HGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL-P-SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNAR-Y 329 (567)
T ss_pred eeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC-C-ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhh-C
Confidence 234567788888999999888776665543321 1 111223334443333 233444433 22211 1222333332 2
Q ss_pred CCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhc-cCCCCChhhHHHHHH----HHHHHhhhHHHH
Q 006440 356 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK-SNESKTPIDIVSALK----SYERARRLRVAV 430 (645)
Q Consensus 356 ~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~-~~~~~~~~~~~~~L~----~Y~~~R~~~~~~ 430 (645)
+...|..+|++|||||||.+||++|||+|+||+||..|+++|....+. +.+.+...+...+|+ .|+++|++++..
T Consensus 330 p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~ 409 (567)
T PTZ00367 330 PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHAST 409 (567)
T ss_pred CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHH
Confidence 344678899999999999999999999999999999999999764321 001111224467777 999999999998
Q ss_pred HHHHHHHHH
Q 006440 431 IHGLARSAA 439 (645)
Q Consensus 431 ~~~~s~~~~ 439 (645)
++.++....
T Consensus 410 i~~ls~aL~ 418 (567)
T PTZ00367 410 INILSWALY 418 (567)
T ss_pred HHHHHHHHH
Confidence 888776543
No 45
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.97 E-value=1e-29 Score=252.96 Aligned_cols=388 Identities=21% Similarity=0.248 Sum_probs=248.3
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeccCccc----cCCCCcc-cceeeCchHHHHHHhcChhHHHH
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAI----RGEGQYR-GPIQIQSNALAALEAIDLDVAEE 143 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~~~----~~~g~~~-~~~~l~~~~~~~l~~l~~g~~~~ 143 (645)
.....+||+||||||+|+++|..|... -.+|.|+|....+. .....+. +-..+++.+...++.+ |.|+.
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~--~awd~ 109 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI--GAWDH 109 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc--CHHHH
Confidence 344579999999999999999999864 56899999763221 1111111 2345899999999999 89998
Q ss_pred HHHhccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHH-Hc----CCceEEcCceEEEEEee-
Q 006440 144 VMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK-AV----GDEIILNESNVIDFKDH- 217 (645)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~----~~~~i~~~~~v~~i~~~- 217 (645)
+.........++. .+|+-+ ...+.|+. ...+.+.+++++...++..|.+ .+ .+..+...+++.++...
T Consensus 110 i~~~R~~~~~~~~-v~Ds~s-~a~I~~~~----d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~ 183 (481)
T KOG3855|consen 110 IFHDRYQKFSRML-VWDSCS-AALILFDH----DNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPE 183 (481)
T ss_pred hhhhcccccccee-eecccc-hhhhhhcc----ccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeecccc
Confidence 8765433222222 233322 22344432 2234456789999999999985 22 22346667777776542
Q ss_pred -------CCeEEEEEcCCcEEeccEEEEccCCchhhhhhh-cCCCCCcccCeEEEEEEeccCC-CCccccceEEEecCce
Q 006440 218 -------GDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVP-ADIESVGYRVFLGHKQ 288 (645)
Q Consensus 218 -------~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 288 (645)
.....+++.||..+..||+|||||.||.||+.. +....+.|.++ +..+...... ......+|+.|++.|+
T Consensus 184 ~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~h-avVAtl~l~~~~~~~~~AwQRFlP~Gp 262 (481)
T KOG3855|consen 184 YLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQH-AVVATLKLEEEAILNGVAWQRFLPTGP 262 (481)
T ss_pred ccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccce-eeeEEEEecccccccchhHHhcCCCCc
Confidence 234678899999999999999999999999998 45567778874 4444433333 3445678999999998
Q ss_pred EEEEee-cCCCeEEEEEEEeCCCCCC-CCCcchHHHHHHHHcCCCh------hH-----------HHHHHcCCccceeec
Q 006440 289 YFVSSD-VGAGKMQWYAFHKEPAGGV-DGPEGKKERLLKIFEGWCD------NV-----------VDLILATDEEAILRR 349 (645)
Q Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~------~~-----------~~~l~~~~~~~~~~~ 349 (645)
+.+.+- .....+.|.........-. -+++...+.+...|..-.+ .. ..++.......-...
T Consensus 263 iAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~ 342 (481)
T KOG3855|consen 263 IALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQY 342 (481)
T ss_pred eeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccccccc
Confidence 876543 2334567754311000000 0011111111111110000 00 011111111000000
Q ss_pred ------------cc--ccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHH
Q 006440 350 ------------DI--YDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 415 (645)
Q Consensus 350 ------------~~--~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 415 (645)
.. .....+..|+.+|+.|+|||||.+||++|||+|+|+.|+..|...|.++...+. +.+...
T Consensus 343 pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~----DlgS~~ 418 (481)
T KOG3855|consen 343 PPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL----DLGSVE 418 (481)
T ss_pred CCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcc----cccchh
Confidence 00 001123468899999999999999999999999999999999999999988754 455578
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhcccCCCCccc--ceeeeeccc
Q 006440 416 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAM 480 (645)
Q Consensus 416 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~ 480 (645)
-|+.|+++|.+.+..+ +...+. ++.+|....+++..+|.++|.+.+.++ |+++|.+++
T Consensus 419 ~L~~y~~~~~~~N~~l------l~~vdk-l~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~ 478 (481)
T KOG3855|consen 419 HLEPYERERLQHNYVL------LGAVDK-LHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTAS 478 (481)
T ss_pred hhhHHHHHHhhhcchH------HHHHHH-HHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHh
Confidence 8999999998887532 333343 667888889999999999999888876 477776654
No 46
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=1.9e-28 Score=280.80 Aligned_cols=316 Identities=24% Similarity=0.275 Sum_probs=196.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
++|+||||||+|+++|+.|+++ |++|+|+|+++.. ...| .++.+++++++.|+.++..+.+.+..... .....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-~~~G---~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~-~~~~~ 75 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-DTFG---WGVVFSDATLGNLRAADPVSAAAIGDAFN-HWDDI 75 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-cccC---cceEccHHHHHHHHhcCHHHHHHHHHhcc-cCCce
Confidence 3799999999999999999998 8999999997543 2222 36889999999998875323344333211 10111
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcEEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (645)
. +.. .+.. ....+.++ ..++|.+|.+.|.+++.. ..+++++++++++.. ..++
T Consensus 76 ~-~~~--~g~~---------~~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~ 130 (765)
T PRK08255 76 D-VHF--KGRR---------IRSGGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADA 130 (765)
T ss_pred E-EEE--CCEE---------EEECCeeE-ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCC
Confidence 1 000 0110 01122232 468999999999987632 357888888766421 2579
Q ss_pred cEEEEccCCchhhhhhhcC---CC-CCcccCeEEEEEEeccCCCCccccceEE-EecCce-EEEEeecCCCeEEEEEEEe
Q 006440 234 DLLIGADGIWSKVRKNLFG---PQ-EAIYSGYTCYTGIADFVPADIESVGYRV-FLGHKQ-YFVSSDVGAGKMQWYAFHK 307 (645)
Q Consensus 234 ~lvVgADG~~S~vR~~l~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 307 (645)
|+||+|||.+|.+|+.+.. .. ...+.. +.|.+.... +....+.. ....+. ....++..++...|++...
T Consensus 131 D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~w~g~~~~----~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~ 205 (765)
T PRK08255 131 DLVIASDGLNSRIRTRYADTFQPDIDTRRCR-FVWLGTHKV----FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETP 205 (765)
T ss_pred CEEEEcCCCCHHHHHHHHhhcCCceecCCCc-eEEecCCCc----ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcC
Confidence 9999999999999997631 11 112222 233332111 11111100 011221 1223555555555544432
Q ss_pred CCC-----CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCc----EEEEccccCcCCCC
Q 006440 308 EPA-----GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPN 378 (645)
Q Consensus 308 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r----vvLvGDAAH~~~P~ 378 (645)
... ......+...+.+.+.|..|.+.. +++..........|..+......+|+.+| ++|+|||||+++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~ 284 (765)
T PRK08255 206 EEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFS 284 (765)
T ss_pred HHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCC
Confidence 110 011122344566777787775532 22222211111224444445567899999 99999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006440 379 LGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (645)
Q Consensus 379 ~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 438 (645)
.|||+|+||+||..|+++|... ..+++.+|+.|+++|++++..++..++..
T Consensus 285 ~GqG~~~aieDa~~La~~L~~~---------~~~~~~al~~ye~~R~~r~~~~~~~s~~~ 335 (765)
T PRK08255 285 IGSGTKLALEDAIELARCLHEH---------PGDLPAALAAYEEERRVEVLRIQNAARNS 335 (765)
T ss_pred cchhHHHHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999763 11468999999999999999999888743
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.96 E-value=7.2e-27 Score=251.68 Aligned_cols=317 Identities=18% Similarity=0.201 Sum_probs=180.7
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
+....+||+||||||||+++|+.|+++|++|+|+|+........| +++ + ...++.+ ++.+++.... ...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cg---g~i--~---~~~l~~l--gl~~~~~~~~-i~~ 103 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCG---GAI--P---LCMVGEF--DLPLDIIDRK-VTK 103 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCcc---ccc--c---HhHHhhh--cCcHHHHHHH-hhh
Confidence 344569999999999999999999999999999999753222222 233 2 3556666 4555544321 111
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEee---CCeEEEEEcC
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH---GDKVSVVLEN 227 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~---~~~v~v~~~~ 227 (645)
..+ ... ......++.. ....++..+++|..|++.|.+++.. ..++.+ ++++++.. ++.+.|++.+
T Consensus 104 ~~~---~~p--~~~~v~~~~~----~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~ 173 (450)
T PLN00093 104 MKM---ISP--SNVAVDIGKT----LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTS 173 (450)
T ss_pred heE---ecC--CceEEEeccc----CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEe
Confidence 111 111 1112222210 1112334579999999999887522 235544 57777642 2456666532
Q ss_pred -------C--cEEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCC--CCccccceEEEec----CceEEEE
Q 006440 228 -------G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVS 292 (645)
Q Consensus 228 -------g--~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 292 (645)
| .+++||+||||||++|.||+.+.... ..+ ..++........ .+.......++++ ++.+.|.
T Consensus 174 ~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~Wi 250 (450)
T PLN00093 174 YDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD-YDY--AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWV 250 (450)
T ss_pred ccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC-cce--eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEE
Confidence 3 47999999999999999999984322 111 122222211111 1111222334444 4456777
Q ss_pred eecCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEcccc
Q 006440 293 SDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSV 372 (645)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAA 372 (645)
+|.++ ....-...... . .....+++.+... ....+...........++.. .+..+|..+|++||||||
T Consensus 251 fP~g~-~~~VG~g~~~~------~-~~~~~~~~~l~~~---~~~~l~~~~~~~~~~~~ip~-~~~~~~~~~~vlLvGDAA 318 (450)
T PLN00093 251 FPKCD-HVAVGTGTVVN------K-PAIKKYQRATRNR---AKDKIAGGKIIRVEAHPIPE-HPRPRRVRGRVALVGDAA 318 (450)
T ss_pred EECCC-cEEEEEEEccC------C-CChHHHHHHHHHH---hhhhcCCCeEEEEEEEEccc-ccccceeCCCcEEEeccc
Confidence 78764 33221111010 0 1112222222210 01111111111111222222 344578899999999999
Q ss_pred CcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHH
Q 006440 373 HAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (645)
Q Consensus 373 H~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 429 (645)
|.++|++|+|++.||+++..+|+.+.++++.+ ........|+.|++.++....
T Consensus 319 g~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g----~~~~s~~~L~~Y~~~~~~~~g 371 (450)
T PLN00093 319 GYVTKCSGEGIYFAAKSGRMCAEAIVEGSENG----TRMVDEADLREYLRKWDKKYW 371 (450)
T ss_pred cCCCccccccHHHHHHHHHHHHHHHHHHHhcC----CCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887542 111234678999997776543
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=5.7e-27 Score=241.16 Aligned_cols=288 Identities=20% Similarity=0.202 Sum_probs=174.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||+|+++|+.|+++|++|+|+|+...+.. .. .+..+.+++++.|...+ . ... .. .. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~-~~---~~~~~~~~~~~~l~~~~--~-~~~-~~--~~--~~~- 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY-KP---CGGALSPRVLEELDLPL--E-LIV-NL--VR--GAR- 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-cc---ccCccCHhHHHHhcCCc--h-hhh-hh--ee--eEE-
Confidence 6999999999999999999999999999999864322 11 13456777777776652 2 111 10 00 000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCC-cEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g-~~i~a~ 234 (645)
+.. ..+.. .... ...+..+.++|..|.+.|.+.+.. ..++++++++++..+++++.+.+.++ .++++|
T Consensus 68 ~~~-~~~~~-~~~~-------~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 68 FFS-PNGDS-VEIP-------IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred EEc-CCCcE-EEec-------cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeC
Confidence 111 11111 1111 012335789999999999987643 35788999999998888888777654 589999
Q ss_pred EEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEec----CceEEEEeecCCCeEEEEEEEeCCC
Q 006440 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
+||+|||.+|.+|+.+.... ..+.....+..................+.+ ++.+.+.+|..++.+.+.+......
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~ 217 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRK-EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE 217 (295)
T ss_pred EEEECCCcchHHHHhcCCCC-CCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC
Confidence 99999999999999873221 111111222222221111122222334433 2456777788777655443322211
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHH
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da 390 (645)
......+.+.+..... +. +..........+.+.......+|..+|++|+|||||.++|++|||+|+||+||
T Consensus 218 ----~~~~~~~~~~~~~~~~-~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a 288 (295)
T TIGR02032 218 ----EGEDLKKYLKDFLARR-PE----LKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSG 288 (295)
T ss_pred ----CCCCHHHHHHHHHHhC-cc----cccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHH
Confidence 1122223333333221 11 11111111122233333345678899999999999999999999999999999
Q ss_pred HHHHHHH
Q 006440 391 YQLAVEL 397 (645)
Q Consensus 391 ~~La~~L 397 (645)
..+|++|
T Consensus 289 ~~aa~~~ 295 (295)
T TIGR02032 289 DVAAEVI 295 (295)
T ss_pred HHHHhhC
Confidence 9999864
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.95 E-value=4.1e-26 Score=243.77 Aligned_cols=307 Identities=20% Similarity=0.245 Sum_probs=179.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||||+++|+.|+++|++|+|+|+........+ +. +++ +.++.+ ++.+++.... .....+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg---~~--i~~---~~l~~l--~i~~~~~~~~-~~~~~~-- 67 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCG---GA--IPP---CLIEEF--DIPDSLIDRR-VTQMRM-- 67 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCc---CC--cCH---hhhhhc--CCchHHHhhh-cceeEE--
Confidence 6999999999999999999999999999999722111111 12 333 456666 4555544321 111111
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcC------C-
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN------G- 228 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~------g- 228 (645)
... .+. ...... .....+..+++|..|++.|.+++.. ..++. .+|+++..+++.+.|++.+ |
T Consensus 68 -~~~-~~~-~~~~~~-----~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~~~~~v~~~~~~~~~~~~ 138 (388)
T TIGR02023 68 -ISP-SRV-PIKVTI-----PSEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDRDGVTLTYRTPKKGAGGE 138 (388)
T ss_pred -EcC-CCc-eeeecc-----CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcCCeEEEEEEeccccCCCc
Confidence 111 111 111110 0111222369999999999887521 23544 4699998888888887763 2
Q ss_pred -cEEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCC--CCccccceEEEe----cCceEEEEeecCCCeEE
Q 006440 229 -QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFL----GHKQYFVSSDVGAGKMQ 301 (645)
Q Consensus 229 -~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 301 (645)
.+++|++||+|||.+|.||+.+.......+ ..++........ .........+++ .++.+.+.+|.++ ...
T Consensus 139 ~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~ 215 (388)
T TIGR02023 139 KGSVEADVVIGADGANSPVAKELGLPKNLPR--VIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIA 215 (388)
T ss_pred ceEEEeCEEEECCCCCcHHHHHcCCCCCCcE--EEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeE
Confidence 379999999999999999998843222111 122222221111 111122223333 2345667777653 332
Q ss_pred EEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcc
Q 006440 302 WYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (645)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~Gq 381 (645)
..... .. .....+.+++.+..+.+ +............+. ..+..+|..+|++|||||||.++|++||
T Consensus 216 vg~~~-~~------~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ip-~~~~~~~~~~~v~lvGDAAg~v~P~tG~ 282 (388)
T TIGR02023 216 VGTGT-GT------HGFDAKQLQANLRRRAG-----LDGGQTIRREAAPIP-MKPRPRWDFGRAMLVGDAAGLVTPASGE 282 (388)
T ss_pred EeEEE-CC------CCCCHHHHHHHHHHhhC-----CCCceEeeeeeEecc-ccccccccCCCEEEEeccccCcCCcccc
Confidence 22211 10 01112333333332211 000000011111122 2344678889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHH
Q 006440 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (645)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 430 (645)
|+++||+++..+++.|.+++..+ ....|+.|+++++.....
T Consensus 283 GI~~A~~sg~~aa~~i~~~l~~~--------~~~~L~~Y~~~~~~~~~~ 323 (388)
T TIGR02023 283 GIYFAMKSGQMAAQAIAEYLQNG--------DATDLRHYERKFMKLYGT 323 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987531 146799999998876543
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.4e-26 Score=243.62 Aligned_cols=306 Identities=15% Similarity=0.116 Sum_probs=171.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||+|+++|+.|+++ ++|+|+|+.+...........+..++++++++|+++|.......... .....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~-----~~~~~ 75 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN-----PQIFA 75 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeec-----cccce
Confidence 7999999999999999999999 99999999764211000000134689999999999943211111000 00000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeCCeEEEEE-cCCc--EEec
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAG 233 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~i~a 233 (645)
. ....+... .....+.+ .+.++|..|++.|.+.... ..+++++++++++.+++++.|++ ++|+ +++|
T Consensus 76 ~-------~~~~~~~~-~~~~~~~~-~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a 146 (351)
T PRK11445 76 V-------KTIDLANS-LTRNYQRS-YINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITA 146 (351)
T ss_pred e-------eEeccccc-chhhcCCC-cccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEe
Confidence 0 00111100 00111222 3569999999999886532 35888999999998888888886 5664 6999
Q ss_pred cEEEEccCCchhhhhhhcCCC-CCcccCeEEEEEEeccCCCCccccceEEEec---CceEEEEeecCCCeEEEEEEEeCC
Q 006440 234 DLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEP 309 (645)
Q Consensus 234 ~lvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 309 (645)
|+||+|||.+|.+|+.+.... ...|. ++....... .+. ..+..++. ...+.|.+|..+.. ...... +
T Consensus 147 ~~vV~AdG~~S~vr~~l~~~~~~~~~~---~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~--~ 217 (351)
T PRK11445 147 RYLVGADGANSMVRRHLYPDHQIRKYV---AIQQWFAEK-HPV--PFYSCIFDNEITDCYSWSISKDGYF-IFGGAY--P 217 (351)
T ss_pred CEEEECCCCCcHHhHHhcCCCchhhEE---EEEEEecCC-CCC--CCcceEEeccCCCceEEEeCCCCcE-Eecccc--c
Confidence 999999999999999884322 12222 222211111 110 11111111 12334444443211 110000 1
Q ss_pred CCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCC--cccCCcEEEEccccCcCCCCCcchhhHHH
Q 006440 310 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF--TWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (645)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~rvvLvGDAAH~~~P~~GqG~n~al 387 (645)
.. ......+.+.+.+........+.+.. ....+....... .+..+|++|||||||.++|++|||+|+|+
T Consensus 218 ~~---~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al 288 (351)
T PRK11445 218 MK---DGRERFETLKEKLSAFGFQFGKPVKT------EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYAL 288 (351)
T ss_pred cc---chHHHHHHHHHHHHhccccccccccc------ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHH
Confidence 00 00001111111111100000000000 000011111111 23468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHH
Q 006440 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (645)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~ 428 (645)
+|+..|++.|.+.. ...|+.|++.++.-.
T Consensus 289 ~sa~~la~~l~~~~------------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 289 DSARILSEVLNKQP------------EKLNTAYWRKTRKLR 317 (351)
T ss_pred HhHHHHHHHHHhcc------------cchHHHHHHHHHHHH
Confidence 99999999997642 356899999777654
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.95 E-value=4.9e-25 Score=235.43 Aligned_cols=312 Identities=18% Similarity=0.199 Sum_probs=176.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+||||||+|+++|+.|+++|++|+|+|+....... +.+. ++ ...|+++ ++.+.+.... .....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~---cg~~--i~---~~~l~~~--g~~~~~~~~~-i~~~~~-- 67 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP---CGGA--IP---LCMVDEF--ALPRDIIDRR-VTKMKM-- 67 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC---cccc--cc---HhhHhhc--cCchhHHHhh-hceeEE--
Confidence 58999999999999999999999999999997532211 1122 22 3556776 4444443321 111111
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEe---eCCeEEEEE--cC---
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD---HGDKVSVVL--EN--- 227 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~---~~~~v~v~~--~~--- 227 (645)
.. . ......+... .....+.++++|..|++.|.+++.. ..++.+ ++++++. .++.+.|++ .+
T Consensus 68 -~~-p-~~~~~~~~~~----~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~ 139 (398)
T TIGR02028 68 -IS-P-SNIAVDIGRT----LKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGG 139 (398)
T ss_pred -ec-C-CceEEEeccC----CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccc
Confidence 11 0 1111222110 0111223479999999999887632 235555 4777653 234455554 22
Q ss_pred --C--cEEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCC--CccccceEEEec----CceEEEEeecCC
Q 006440 228 --G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVGA 297 (645)
Q Consensus 228 --g--~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~ 297 (645)
| .+++|++||+|||++|.||+.+.... +.....+......... ........++++ ++.+.|.+|.++
T Consensus 140 ~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~ 216 (398)
T TIGR02028 140 PSGTRCTLEVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD 216 (398)
T ss_pred cCCCccEEEeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC
Confidence 3 37999999999999999999984321 1111222212221111 111222344443 456778888764
Q ss_pred CeEEEEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCC
Q 006440 298 GKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQP 377 (645)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P 377 (645)
....-.. ... .....+.+.+.+.... ...+.......+...++.. .+..+|..+|++|||||||.++|
T Consensus 217 -~~~VG~g-~~~------~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~llvGDAAg~v~P 284 (398)
T TIGR02028 217 -HVAVGTG-TVA------AKPEIKRLQSGIRARA---AGKVAGGRIIRVEAHPIPE-HPRPRRVVGRVALVGDAAGYVTK 284 (398)
T ss_pred -eEEEEEE-eCC------CCccHHHHHHhhhhhh---hhccCCCcEEEEEEEeccc-cccccEECCCEEEEEcCCCCCCc
Confidence 3332111 110 1111233443332110 0001011111111222222 23457888999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHH
Q 006440 378 NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (645)
Q Consensus 378 ~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 429 (645)
++|+|+++||+++..+|+.+.++++.+ ........|+.|++..+....
T Consensus 285 ~tGeGI~~A~~sg~~aa~~i~~~~~~~----~~~~~~~~l~~Y~~~~~~~~~ 332 (398)
T TIGR02028 285 CSGEGIYFAAKSGRMCAEAIVEESRLG----GAVTEEGDLAGYLRRWDKEYR 332 (398)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcC----CCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887542 111235779999997766443
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.93 E-value=1.3e-23 Score=224.59 Aligned_cols=318 Identities=21% Similarity=0.181 Sum_probs=187.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
+.+||+||||||||++||+.|++.|++|+|+|+...+...... +-.+.+..++.+... ...++.. ......+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~---~~~~~~~~l~~l~~~---~~~~i~~--~v~~~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC---GGGLSPRALEELIPD---FDEEIER--KVTGARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc---cceechhhHHHhCCC---cchhhhe--eeeeeEE
Confidence 4689999999999999999999999999999997654322211 122444444333222 1111111 0111111
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcC-CcEEe
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN-GQCYA 232 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~-g~~i~ 232 (645)
. .. .....+.. ..+.+++++|..|+++|.+.+.+ ..++.+++++++..+++++.+.... +.+++
T Consensus 74 ~--~~--~~~~~~~~---------~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 140 (396)
T COG0644 74 Y--FP--GEKVAIEV---------PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVR 140 (396)
T ss_pred E--ec--CCceEEec---------CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEE
Confidence 1 00 11111111 11347899999999999887632 2488899999999988877655544 47899
Q ss_pred ccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEE---ecCceEEEEeecCCCeEEEEEEEeCC
Q 006440 233 GDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF---LGHKQYFVSSDVGAGKMQWYAFHKEP 309 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (645)
|++||+|||.+|.+++.+.............+..+. ..+.+.....+..+ ..+..+.+.+|..++..+.-+.....
T Consensus 141 a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~ 219 (396)
T COG0644 141 AKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVI-EVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLD 219 (396)
T ss_pred cCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEE-ecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecC
Confidence 999999999999999999544111111111122111 12211111111111 34567788889888766554433222
Q ss_pred CCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCc-ccCCcEEEEccccCcCCCCCcchhhHHHH
Q 006440 310 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (645)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~rvvLvGDAAH~~~P~~GqG~n~al~ 388 (645)
. . ...... ++++.|.... .....+.......+....+....+... +..++++||||||.+++|++|.|+..||.
T Consensus 220 ~--~-~~~~~~-~~l~~f~~~~-~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~ 294 (396)
T COG0644 220 D--P-SLSPFL-ELLERFKEHP-AIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIK 294 (396)
T ss_pred C--c-CCCchH-HHHHHHHhCc-ccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHH
Confidence 2 1 111111 3333332211 111111111112222223333323333 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHH
Q 006440 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (645)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~ 429 (645)
++..+|+.|.++...+ ...|..|++..+....
T Consensus 295 sg~~Aa~~i~~~~~~~---------~~~l~~Y~~~~~~~~~ 326 (396)
T COG0644 295 SGKLAAEAIAEALEGG---------EEALAEYERLLRKSLA 326 (396)
T ss_pred HHHHHHHHHHHHHHcC---------hhHHHHHHHHHHHHHH
Confidence 9999999999986531 5677888888876543
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.93 E-value=1.2e-23 Score=226.39 Aligned_cols=330 Identities=17% Similarity=0.135 Sum_probs=174.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHH-HHHhccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-VMRAGCVTGDR 154 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~-~~~~~~~~~~~ 154 (645)
.++||+||||||||+++|+.|+++|++|+|+|+.+.+.... .+++. +...+++ .+..++... ..+. ......
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~gg~--i~~~~~~---~l~~~~~~~~~i~~-~~~~~~ 76 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MTGGR--LYAHTLE---AIIPGFAASAPVER-KVTREK 76 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-ccCce--eecccHH---HHcccccccCCccc-ccccee
Confidence 46899999999999999999999999999999976442211 01111 2222222 221111110 0000 001111
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
+. +.+.. +...+.+.... .......++.+.|..|+++|.+++.. ..++.+++|+++..+++.+.....++.+++
T Consensus 77 ~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~ 152 (429)
T PRK10015 77 IS-FLTEE-SAVTLDFHREQ--PDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILE 152 (429)
T ss_pred EE-EEeCC-CceEeecccCC--CCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEE
Confidence 11 11111 11112221110 00011125789999999999887632 357889999999877777654444556899
Q ss_pred ccEEEEccCCchhhhhhhcCCCCC-cccCeEEEEEEeccCCCCccccceEEEecCceEE--------------EEeecCC
Q 006440 233 GDLLIGADGIWSKVRKNLFGPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYF--------------VSSDVGA 297 (645)
Q Consensus 233 a~lvVgADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 297 (645)
|++||+|||.+|.+++.+...... ......++..... .+.+.-...+....+.+..+ +.++. .
T Consensus 153 A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~-~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~ 230 (429)
T PRK10015 153 ANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIG-LTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-K 230 (429)
T ss_pred CCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEe-CCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-C
Confidence 999999999999999987321111 1111112221111 11111000010000111111 11221 1
Q ss_pred CeEEEEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeeccccc--CCCCCcccCCcEEEEccccCcC
Q 006440 298 GKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAM 375 (645)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~rvvLvGDAAH~~ 375 (645)
+.+..-+...... ..........+++.|. .++.+.+.+......+.....++. ....++.+.++++||||||..+
T Consensus 231 d~v~vGv~~~~~~--~~~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v 307 (429)
T PRK10015 231 DSISLGLVCGLGD--IAHAQKSVPQMLEDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFC 307 (429)
T ss_pred CcEEEEEEEehhh--hccCCCCHHHHHHHHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccc
Confidence 2222111110000 0001123344555554 345555554332222222222211 1123466789999999999999
Q ss_pred CC--CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhH
Q 006440 376 QP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 427 (645)
Q Consensus 376 ~P--~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~ 427 (645)
+| ++|+||++||.++..+|+.+.++++.+ +.....|+.|++..+..
T Consensus 308 ~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 308 LNLGFTVRGMDLAIASAQAAATTVIAAKERA------DFSASSLAQYKRELEQS 355 (429)
T ss_pred cccCccccchhHHHHHHHHHHHHHHHHHhcC------CCccccHHHHHHHHHHC
Confidence 95 699999999999999999999887641 12356679999877654
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.92 E-value=2.5e-23 Score=224.26 Aligned_cols=332 Identities=17% Similarity=0.135 Sum_probs=175.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
..+||+||||||+|+++|+.|+++|++|+|+||...+.... .. ++. +.... ++.+...+.....-........+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~-~~-gg~-l~~~~---~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN-VT-GGR-LYAHS---LEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc-cc-cce-echhh---HHHHhhhhhhcCcccceeeeeeE
Confidence 46999999999999999999999999999999975432111 01 111 22222 22221111110000000000111
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (645)
. +... .+.....+... ......+..+.+.|..|++.|.+.+. ...++.+++|+++..+++.+.+...++.+++|
T Consensus 78 ~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A 153 (428)
T PRK10157 78 A-FMTE-KSAMTMDYCNG--DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEA 153 (428)
T ss_pred E-EEcC-CCceeeccccc--cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEEC
Confidence 1 1111 11111111110 00011123578999999999988763 23588899999998877776555567778999
Q ss_pred cEEEEccCCchhhhhhhcCCCCCcccCeEE-EEEEeccCCCCc-c-------ccc-eEEEec---Cc--eEEEEeecCCC
Q 006440 234 DLLIGADGIWSKVRKNLFGPQEAIYSGYTC-YTGIADFVPADI-E-------SVG-YRVFLG---HK--QYFVSSDVGAG 298 (645)
Q Consensus 234 ~lvVgADG~~S~vR~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~-------~~~-~~~~~~---~~--~~~~~~~~~~~ 298 (645)
++||+|||.+|.+++.+.........+... +...... +... + ..+ ...+.+ .+ +..+.++. ..
T Consensus 154 ~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~ 231 (428)
T PRK10157 154 KTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIEL-PKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-EN 231 (428)
T ss_pred CEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEc-CHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CC
Confidence 999999999999999873222222222111 1111111 1110 0 011 111111 10 00011121 12
Q ss_pred eEEEEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccc--cCCCCCcccCCcEEEEccccCcCC
Q 006440 299 KMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQ 376 (645)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~rvvLvGDAAH~~~ 376 (645)
.+...+..... ...........+++.|.. .+.+...+.......+....+. .....++...+++++|||||..++
T Consensus 232 ~~svG~~~~~~--~~~~~~~~~~~~l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~ 308 (428)
T PRK10157 232 TLSLGLVCGLH--HLHDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM 308 (428)
T ss_pred eEEEEEEEehH--HhcccCCCHHHHHHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccc
Confidence 22211111100 000112234455555543 3444433322211111111111 112234567899999999999999
Q ss_pred C--CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHH
Q 006440 377 P--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (645)
Q Consensus 377 P--~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~ 428 (645)
| ++|+|+++|+.++..+|+.+.++++.+ +.....|+.|++.-+..+
T Consensus 309 p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 309 NLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccCceeeeHHHHHHHHHHHHHHHHHHHhcC------CcchhhHHHHHHHHHHhH
Confidence 8 599999999999999999999887641 234567999998766553
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=200.63 Aligned_cols=345 Identities=18% Similarity=0.169 Sum_probs=216.0
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc-cccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS-AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~ 151 (645)
......||+|||||.+|.++|+.|+|.|-+|.|+||+-. +.+-.| ..++|.+...|.+| |+.+.+.......
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivG-----EllQPGG~~~L~~L--Gl~Dcve~IDAQ~ 113 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVG-----ELLQPGGYLALSKL--GLEDCVEGIDAQR 113 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHH-----HhcCcchhHHHHHh--CHHHHhhcccceE
Confidence 344568999999999999999999999999999999753 333333 45899999999999 6766665433322
Q ss_pred ccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCeEE-EEEc-
Q 006440 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE- 226 (645)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~- 226 (645)
......+.++. ...+.++.. .-...+.+...++..|.+-|++.+ ++..+ ...+|.++.++++.+. |+++
T Consensus 114 v~Gy~ifk~gk--~v~~pyP~~---~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~-eeGtV~sLlee~gvvkGV~yk~ 187 (509)
T KOG1298|consen 114 VTGYAIFKDGK--EVDLPYPLK---NFPSDPSGRSFHNGRFVQRLRKKAASLPNVRL-EEGTVKSLLEEEGVVKGVTYKN 187 (509)
T ss_pred eeeeEEEeCCc--eeeccCCCc---CCCCCcccceeeccHHHHHHHHHHhcCCCeEE-eeeeHHHHHhccCeEEeEEEec
Confidence 22222223322 122233211 111223467888999999999876 33333 3456777766655432 4443
Q ss_pred -CCc--EEeccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEE
Q 006440 227 -NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (645)
Q Consensus 227 -~g~--~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (645)
.|+ +..|.+-|.|||-.|.+||.+.......-. ..+.|+.-.......+...+..++.....++|++...+.+..
T Consensus 188 k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~--S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl 265 (509)
T KOG1298|consen 188 KEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVP--SYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCL 265 (509)
T ss_pred CCCceEEEecceEEEecchhHHHHHHhcCCcccccc--hheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEE
Confidence 343 567999999999999999999543333221 123333322222222333345555556677788888888776
Q ss_pred EEEeCCCCCCCCCcchHHHHHHHHcCC-ChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcch
Q 006440 304 AFHKEPAGGVDGPEGKKERLLKIFEGW-CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (645)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG 382 (645)
+-++.+.-...........+.+..... .+.+.+.+.+.-++.-.+.......+.....+.+++|+|||...-||++|.|
T Consensus 266 ~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggG 345 (509)
T KOG1298|consen 266 VDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGG 345 (509)
T ss_pred EecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCc
Confidence 655432211111122234444444443 3344444433333222222222233444556789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 006440 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (645)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 436 (645)
|..++.|+..|-+.|.....- ......-+.++.|...|++....+..++.
T Consensus 346 MtV~l~Di~lLr~ll~pl~dL----~d~ekv~~~i~sFy~~RKp~s~tINtLa~ 395 (509)
T KOG1298|consen 346 MTVALSDIVLLRRLLKPLPDL----SDAEKVSDYIKSFYWIRKPYSATINTLAN 395 (509)
T ss_pred eEeehhHHHHHHHHhcccccc----ccHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 999999999999988763221 23445667889999999998877766664
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.90 E-value=5.5e-22 Score=212.44 Aligned_cols=307 Identities=15% Similarity=0.125 Sum_probs=165.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 158 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~ 158 (645)
||+||||||+|+++|+.|++.|++|+|+|+.+...... ...+... .++.+ ++. .+.... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~-----~~~~~~~---~~~~~--~~~-~~~~~~-~~------- 61 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-----TYGVWDD---DLSDL--GLA-DCVEHV-WP------- 61 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCc-----cccccHh---hhhhh--chh-hHHhhc-CC-------
Confidence 79999999999999999999999999999875321110 1112221 12333 221 111110 00
Q ss_pred cccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEee-CCeEEEEEcCCcEEeccE
Q 006440 159 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDL 235 (645)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~a~l 235 (645)
+.....++.. .....++ ...+++..|.+.|.+.+.. ..+ ...++++++.+ ++.+.|++.+|++++|++
T Consensus 62 -----~~~~~~~~~~--~~~~~~~-~~~i~~~~l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~ 132 (388)
T TIGR01790 62 -----DVYEYRFPKQ--PRKLGTA-YGSVDSTRLHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYCAGGQRIQARL 132 (388)
T ss_pred -----CceEEecCCc--chhcCCc-eeEEcHHHHHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCE
Confidence 0000111100 0111223 2369999999999887643 234 36688888877 667888888888999999
Q ss_pred EEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEE-ecC--------ce--EEEEeecCCCeEEEEE
Q 006440 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF-LGH--------KQ--YFVSSDVGAGKMQWYA 304 (645)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~--~~~~~~~~~~~~~~~~ 304 (645)
||+|||.+|.+++...+. ...+.....+.......+.+.+...+.-+ ..+ .. +++.+|..++...+..
T Consensus 133 VI~A~G~~s~~~~~~~~~-~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~ 211 (388)
T TIGR01790 133 VIDARGFGPLVQYVRFPL-NVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEE 211 (388)
T ss_pred EEECCCCchhcccccCCC-CceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEe
Confidence 999999999776543211 11121111111111111111111001001 010 12 5566676665543321
Q ss_pred EEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhh
Q 006440 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (645)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n 384 (645)
.. .........+...+.+.+.+....-... .... ..+.+.+......+..+|+++||||||.++|++|+|++
T Consensus 212 ~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~----~i~~---~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~ 283 (388)
T TIGR01790 212 TS-LADRPALPRDRLRQRILARLNAQGWQIK----TIEE---EEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVA 283 (388)
T ss_pred cc-ccCCCCCCHHHHHHHHHHHHHHcCCeee----EEEe---eeeEEEecccCCCccCCCeeeeechhcCcCCcccccHH
Confidence 11 1110001111112223222221100000 0000 01111121112134789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHH
Q 006440 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (645)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 430 (645)
.|++++..|++.|.+++.. +...+++.|++..+++...
T Consensus 284 ~al~~a~~la~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 284 RALSDAPGLAAAIAQALCQ--------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHHHHHHhcc--------CHHHHHHHHHHhchHHHHH
Confidence 9999999999999988653 1367888888766655443
No 57
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.87 E-value=2.6e-20 Score=196.45 Aligned_cols=300 Identities=13% Similarity=0.145 Sum_probs=161.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
||+|||||+||+++|..|++. |++|.++|+.+..... . ...+....+. ......++.+... .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~----tw~~~~~~~~---~~~~~~~~~~v~~------~-- 64 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-H----TWSFFDSDLS---DAQHAWLADLVQT------D-- 64 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-c----cceecccccc---hhhhhhhhhhheE------e--
Confidence 799999999999999999997 9999999997521110 0 0111100000 0000011111111 0
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+. ...+.++.. ....++++ ..|++.+|.+.|.+.++.. ++.+++|+++ +++++++ ++|++++|++|
T Consensus 65 --W~----~~~v~~~~~--~~~l~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~V 130 (370)
T TIGR01789 65 --WP----GYEVRFPKY--RRKLKTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSV 130 (370)
T ss_pred --CC----CCEEECcch--hhhcCCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEE
Confidence 00 011222111 12223443 5899999999999888766 6668999988 3455544 78999999999
Q ss_pred EEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEE--Ee---cCceE-EEEeecCCCeEEEEEEEeCCC
Q 006440 237 IGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRV--FL---GHKQY-FVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 237 VgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 310 (645)
|+|||.+|.-... .++..+.|+......+++.....+ |. ..+.. +...|..++...|-...-.+.
T Consensus 131 I~A~G~~s~~~~~---------~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~ 201 (370)
T TIGR01789 131 IDCRGFKPSAHLK---------GGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD 201 (370)
T ss_pred EECCCCCCCcccc---------ceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC
Confidence 9999999752111 122222222111111122221111 11 23333 334677777766643221110
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceee--cccccC---C-CCCccc-CCcEEEEccccCcCCCCCcchh
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILR--RDIYDR---T-PIFTWG-RGRVTLLGDSVHAMQPNLGQGG 383 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~---~-~~~~~~-~~rvvLvGDAAH~~~P~~GqG~ 383 (645)
+.-..+.+.+.+..+.... ......+.. ..+.+. . ....|. .++++++|||||.+||.+|||+
T Consensus 202 -----~~l~~~~l~~~l~~~~~~~-----g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~ 271 (370)
T TIGR01789 202 -----PLLDRNALSQRIDQYARAN-----GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSL 271 (370)
T ss_pred -----CCCCHHHHHHHHHHHHHHh-----CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccH
Confidence 1112233333333221100 001011110 011111 0 011233 4569999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 006440 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (645)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~ 436 (645)
+.+++||..|++.+.. . .....+++..|+..|+.+.....-+.+
T Consensus 272 ~~a~~~a~~la~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (370)
T TIGR01789 272 PVAVENADALAAQPDL--S-------SEQLAAFIDSRARRHWSKTGYYRLLNR 315 (370)
T ss_pred HHHHHHHHHHHhccCc--C-------ccchhhhhhHHHHHHHHHhHHHHHHHH
Confidence 9999999999988741 1 112345678999988887764433333
No 58
>PLN02463 lycopene beta cyclase
Probab=99.86 E-value=1.5e-19 Score=193.86 Aligned_cols=288 Identities=16% Similarity=0.201 Sum_probs=161.9
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
....+||+||||||+|+++|..|+++|++|+|+|+.+...... ...+ ....++.+ ++.+.+.... ...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~-----~~g~---w~~~l~~l--gl~~~l~~~w--~~~ 92 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN-----NYGV---WVDEFEAL--GLLDCLDTTW--PGA 92 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc-----ccch---HHHHHHHC--CcHHHHHhhC--CCc
Confidence 4456899999999999999999999999999999864321110 0111 12446666 5555443211 111
Q ss_pred ccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
.+ +.+... ....+.++ ..|+|..|.+.|.+++.. ..++ ..+|++++.+++++.|++++|+++
T Consensus 93 ~v--~~~~~~------------~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i 156 (447)
T PLN02463 93 VV--YIDDGK------------KKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKI 156 (447)
T ss_pred EE--EEeCCC------------CccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEE
Confidence 11 111000 01112333 368999999999887632 2343 579999999888899999999999
Q ss_pred eccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEE-ecc--CCCCccccc---eEE-Eec--------C---ceEEEEe
Q 006440 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI-ADF--VPADIESVG---YRV-FLG--------H---KQYFVSS 293 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~---~~~-~~~--------~---~~~~~~~ 293 (645)
+||+||+|||.+|.+++.. .+.+.++....++ .+. .+.+.+... |.. ..+ . ..+++..
T Consensus 157 ~A~lVI~AdG~~s~l~~~~----~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~ 232 (447)
T PLN02463 157 QASLVLDATGFSRCLVQYD----KPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAM 232 (447)
T ss_pred EcCEEEECcCCCcCccCCC----CCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEE
Confidence 9999999999999987532 1111222212222 221 111111100 000 000 0 1245556
Q ss_pred ecCCCeEEEEEEE--eCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccc
Q 006440 294 DVGAGKMQWYAFH--KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDS 371 (645)
Q Consensus 294 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDA 371 (645)
|.+++.+..-... ..+. ...+..++.+.+.++.+.-.. ..... .....+ +.........+|++++|||
T Consensus 233 P~~~~~~~vEeT~l~s~~~---~~~~~lk~~L~~~l~~~Gi~~----~~i~~--~E~~~I-Pmg~~~~~~~~~~~~~G~a 302 (447)
T PLN02463 233 PFSSNRIFLEETSLVARPG---LPMDDIQERMVARLRHLGIKV----KSVEE--DEKCVI-PMGGPLPVIPQRVLGIGGT 302 (447)
T ss_pred ecCCCeEEEEeeeeecCCC---CCHHHHHHHHHHHHHHCCCCc----ceeee--eeeeEe-eCCCCCCCCCCCEEEecch
Confidence 6666653321110 1110 001112222333222111000 00000 111111 1111112346799999999
Q ss_pred cCcCCCCCcchhhHHHHHHHHHHHHHHHHhhc
Q 006440 372 VHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 403 (645)
Q Consensus 372 AH~~~P~~GqG~n~al~Da~~La~~L~~~~~~ 403 (645)
|..++|.+|.|+..++..+..+|+.+.++++.
T Consensus 303 ag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 303 AGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred hcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.84 E-value=1.5e-18 Score=188.85 Aligned_cols=313 Identities=15% Similarity=0.123 Sum_probs=171.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
...+||+||||||+|+++|..|++.|++|+|+|+..+..... .++ ...++.+ ++.+.+... .....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~-------GvW---~~~l~~l--gl~~~i~~~--w~~~~ 171 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-------GVW---EDEFKDL--GLEDCIEHV--WRDTI 171 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc-------ccc---hhHHHhc--CcHHHHHhh--cCCcE
Confidence 345899999999999999999999999999999853221111 122 1345566 443332211 01101
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCeEE-EEEcCCcEE
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVS-VVLENGQCY 231 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i 231 (645)
..++... ....+.++ ..|+|..|.+.|.+++.. ..+ .+++|++++.+++++. +.+.+|.++
T Consensus 172 -------------v~~~~~~-~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i 235 (529)
T PLN02697 172 -------------VYLDDDK-PIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVI 235 (529)
T ss_pred -------------EEecCCc-eeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEE
Confidence 1111000 00012232 268999999999987632 234 5789999988777765 456788899
Q ss_pred eccEEEEccCCchhhhhhhc-CCCCCcccCeEEEEEEeccCCCCccccceEEEec---------------CceEEEEeec
Q 006440 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG---------------HKQYFVSSDV 295 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 295 (645)
+|++||+|||.+|. +.+. ....+.+....++.........+++... ..+.. ...+++..|.
T Consensus 236 ~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~ 312 (529)
T PLN02697 236 PCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPM 312 (529)
T ss_pred ECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeec
Confidence 99999999999993 2221 1111222222222222222211121111 11111 1134556666
Q ss_pred CCCeEEEEEE-EeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeecccccCCCCCcccCCcEEEEccccCc
Q 006440 296 GAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHA 374 (645)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~ 374 (645)
+++....-.. +...+ ....+...+.+...+....-. ....... ....++...+.+.. .++++++||||+.
T Consensus 313 ~~~~~~VE~T~l~~~~--~l~~~~l~~~L~~~l~~~Gi~----~~~i~~~--E~g~iPm~g~~~~~-~~~vl~vG~AAG~ 383 (529)
T PLN02697 313 SSTRVFFEETCLASKD--AMPFDLLKKRLMSRLETMGIR----ILKTYEE--EWSYIPVGGSLPNT-EQKNLAFGAAASM 383 (529)
T ss_pred CCCeEEEEEeeeccCC--CCCHHHHHHHHHHHHHhCCCC----cceEEEE--EeeeecCCCCCccc-CCCeeEeehhhcC
Confidence 6665544222 11110 001112222333333211000 0001011 11111111122222 6899999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhhccCCC---CChhhHHHHHHHHHHHhhhHHH
Q 006440 375 MQPNLGQGGCMAIEDGYQLAVELEKACKKSNES---KTPIDIVSALKSYERARRLRVA 429 (645)
Q Consensus 375 ~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~---~~~~~~~~~L~~Y~~~R~~~~~ 429 (645)
+||.+|-|+..++.+|..+|+.|+++++.+... .........++.|++.+.....
T Consensus 384 vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 384 VHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred CCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 999999999999999999999999998753100 0012457889989887766543
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.82 E-value=1.2e-18 Score=188.29 Aligned_cols=322 Identities=19% Similarity=0.229 Sum_probs=173.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC---CeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHH--HHHhcccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGD 153 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g---~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~--~~~~~~~~~~ 153 (645)
||+|||||+||.++|..|++.+ ++|+|||+...+..+.| ....|....+++.| |+.+. +.+.....+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vG-----e~~~p~~~~~~~~l--gi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVG-----ESTLPSLRPFLRRL--GIDEADFMRACDATFKL 73 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSE-----EE--THHHHCHHHH--T--HHHHCHHCT-EEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCcc-----ccchHHHHHHHHHc--CCChHHHHHHhCCeEec
Confidence 7999999999999999999998 99999999866655554 45677777889999 56555 4444332222
Q ss_pred ccccccc--cCCCceeeeccCC-----------------------------------------Cchh--hcCCCeEEeeC
Q 006440 154 RINGLVD--GISGSWYIKFDTF-----------------------------------------TPAA--EKGLPVTRVIS 188 (645)
Q Consensus 154 ~~~~~~~--~~~~~~~~~~~~~-----------------------------------------~~~~--~~~~~~~~~i~ 188 (645)
.+. +.+ .........|... .+.. .....++|+++
T Consensus 74 g~~-f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlD 152 (454)
T PF04820_consen 74 GIR-FVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLD 152 (454)
T ss_dssp EEE-EESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEE
T ss_pred cEE-eeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEe
Confidence 221 111 0111111112110 0000 11234689999
Q ss_pred HHHHHHHHHHHc---CCceEEcCceEEEEEeeCCe--EEEEEcCCcEEeccEEEEccCCchhhhhhhcCCCCCcccC-eE
Q 006440 189 RMTLQQILAKAV---GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG-YT 262 (645)
Q Consensus 189 r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~-~~ 262 (645)
|..|++.|.+.+ +.. ++.+ +|+++..++++ ..|++++|++++||++|+|+|..|.+.+..+......+.. ..
T Consensus 153 R~~fd~~L~~~A~~~Gv~-~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~ 230 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVE-VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLP 230 (454)
T ss_dssp HHHHHHHHHHHHHHTT-E-EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCE
T ss_pred HHHHHHHHHHHHhcCCCE-EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccccccc
Confidence 999999999875 333 4445 58888776665 3588889999999999999999999887742211111111 11
Q ss_pred EEEEEeccCC-CCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcC
Q 006440 263 CYTGIADFVP-ADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILAT 341 (645)
Q Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 341 (645)
+..++....+ .+...........+.++++..|+.+....-+++..... ..+...+.+.+.+.... ..
T Consensus 231 ~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~~----s~~~A~~~l~~~l~~~~--------~~ 298 (454)
T PF04820_consen 231 NDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGSGYVYSSDFI----SDDEAEAELLAYLGGSP--------EA 298 (454)
T ss_dssp EEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEEEEEEETTTS----HHHHHHHHHHHHHTCHC--------TT
T ss_pred ccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceEEEEeccccC----CHHHHHHHHHHhcchhh--------hc
Confidence 1122211111 11111111233345667777888776555333221110 01111122222222110 00
Q ss_pred CccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q 006440 342 DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 421 (645)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 421 (645)
.. .... +.. ....+...+|+++|||||..++|+.++|+.+++..+..|++.|... . ..+.+++.|+
T Consensus 299 ~~-~~i~--~~~-g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~---------~-~~~~~~~~Yn 364 (454)
T PF04820_consen 299 EP-RHIR--FRS-GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD---------D-FSPAALDRYN 364 (454)
T ss_dssp SC-EEEE---S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT---------T-CCHHHHHHHH
T ss_pred ch-hhhc--ccc-cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC---------C-CCHHHHHHHH
Confidence 00 1111 100 0123445688999999999999999999999999888877777542 1 1267899999
Q ss_pred HHhhhHHHHHHHHHH
Q 006440 422 RARRLRVAVIHGLAR 436 (645)
Q Consensus 422 ~~R~~~~~~~~~~s~ 436 (645)
+..+.....+.++-.
T Consensus 365 ~~~~~~~~~~~~fi~ 379 (454)
T PF04820_consen 365 RRMRREYERIRDFIS 379 (454)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888776655443
No 61
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.72 E-value=4.4e-16 Score=151.98 Aligned_cols=216 Identities=20% Similarity=0.133 Sum_probs=133.8
Q ss_pred eccEEEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccceEEEecCceEEEEeecCCCeEEEEEEEeCCCC
Q 006440 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 311 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (645)
.|.++|.|||..|.+|+.+. ...+.. .+.+.|+.-....-.....-+.++++...+++|++...+++..+-++.+.-
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~~v--~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~ 77 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKPQV--RSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKL 77 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCCce--eeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCcc
Confidence 37899999999999999985 222222 334455432111111222335667777778889999988888776654321
Q ss_pred CCCCCcchHHHHHHHHcCCC-hhHHHHHH-cCCccceeecccccCCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHH
Q 006440 312 GVDGPEGKKERLLKIFEGWC-DNVVDLIL-ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (645)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~D 389 (645)
......+.++.+.+...... +.+.+.+. +..+..+...+.. ..+.......+++++|||++..||++||||+.|+.|
T Consensus 78 P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~-~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 78 PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNS-FLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceeccc-ccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 11111233444444443332 33333332 2333333222222 223334445889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhhccCCCccchhhhc
Q 006440 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKF 462 (645)
Q Consensus 390 a~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~ 462 (645)
|..|++.|...-. -.......++++.|..+|++....+..++.. +..+|..+...++.+|+-
T Consensus 157 v~lL~~lL~~~~d----l~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~a-------LY~lF~a~~~~l~~Lr~g 218 (276)
T PF08491_consen 157 VVLLRDLLSPIPD----LSDTKAVLEALKKFHWKRKPLSSVINILAQA-------LYSLFAADDDYLKALRQG 218 (276)
T ss_pred HHHHHHHHhhhcC----cccHHHHHHHHHHHHHHHccchHHHHHHHHH-------HHHHHhCCCHHHHHHHHH
Confidence 9999999987611 1234457789999999999998877666543 334555555555566653
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.71 E-value=2.5e-15 Score=159.43 Aligned_cols=278 Identities=17% Similarity=0.190 Sum_probs=151.6
Q ss_pred cEEEEcCCHHHHHHHHHH--HHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 79 RILVAGGGIGGLVFALAA--KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l--~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
||+||||||||+++|..| ++.|.+|+|+|+.+....... . ...... ..+ +.++.+..... ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~-~--tW~~~~------~~~--~~~~~~v~~~w-~~~--- 65 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPND-R--TWCFWE------KDL--GPLDSLVSHRW-SGW--- 65 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCC-c--cccccc------ccc--cchHHHHheec-Cce---
Confidence 899999999999999999 888999999998754311110 0 000110 011 11222222211 111
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC-CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 235 (645)
.+.++..... ...++ ..+|++..|.+.|.+++. ...++.+.+|++++.+++.+.|++++|++++|++
T Consensus 66 ----------~v~~~~~~~~-~~~~~-Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~ 133 (374)
T PF05834_consen 66 ----------RVYFPDGSRI-LIDYP-YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARV 133 (374)
T ss_pred ----------EEEeCCCceE-Ecccc-eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeE
Confidence 1111111100 01133 258999999999999875 2346778999999999998999999999999999
Q ss_pred EEEccCCchhhhhhhcCCCCCcccCeEEEEEEeccCCCCccccce-EEEec----CceEEEEeecCCCeEEEEEEEeCCC
Q 006440 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-RVFLG----HKQYFVSSDVGAGKMQWYAFHKEPA 310 (645)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (645)
||+|+|..+...+.. -++....+..-....+-+.+...+ .+... .-.+++..|...+....-...-.+.
T Consensus 134 VvDa~g~~~~~~~~~------~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~ 207 (374)
T PF05834_consen 134 VVDARGPSSPKARPL------GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR 207 (374)
T ss_pred EEECCCccccccccc------ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC
Confidence 999999777621111 122112222111111111111111 11111 1244555677666654422111111
Q ss_pred CCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceee--cccccC--CCCCcccCCcEEEEccccCcCCCCCcchhhHH
Q 006440 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILR--RDIYDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (645)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~--~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~a 386 (645)
+....+.+.+.+..+... .......+.. ..+.++ .....-..++++.+|+||+.++|.+|-++-.+
T Consensus 208 -----~~~~~~~~~~~l~~~l~~-----~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~ 277 (374)
T PF05834_consen 208 -----PALPEEELKARLRRYLER-----LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARI 277 (374)
T ss_pred -----CCCCHHHHHHHHHHHHHH-----cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHH
Confidence 101122222222211111 0111111111 111222 12223345779999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006440 387 IEDGYQLAVELEK 399 (645)
Q Consensus 387 l~Da~~La~~L~~ 399 (645)
++.+..+|+.|.+
T Consensus 278 ~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 278 QRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988888876
No 63
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.69 E-value=6.2e-17 Score=127.07 Aligned_cols=67 Identities=39% Similarity=0.718 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCCcceeeeCCCcccccceEEEEECC-EEEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEEC
Q 006440 556 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 632 (645)
Q Consensus 556 ~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~-~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g 632 (645)
++|||++.|++ +++++.|||.||.|.++++ .|+|+|++|+||||||+. ++.++++++|++||+|+||
T Consensus 1 ~~iGR~~~~di-----~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDI-----VLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSE-----EETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCE-----EECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 58999998888 9999999999999999988 999999999999999999 9999999999999999998
No 64
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.36 E-value=5.5e-12 Score=107.59 Aligned_cols=90 Identities=38% Similarity=0.592 Sum_probs=76.4
Q ss_pred EEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCCC-CCCcceeeeCCCcccccceEEEEEC-CEEEEEECCCCcceeecC
Q 006440 530 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHE-DFSRTSIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTD 607 (645)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~-~~~~~~~~~~~~~vSr~Ha~i~~~~-~~~~i~D~~S~nGt~vn~ 607 (645)
|.|....+. ...+.+.|. . +..++|||+..+ ++ .++++.|||.||+|.++. +.+++.|+.|+||||||+
T Consensus 2 ~~L~~~~~~-~~~~~~~l~-~--~~~~~iGr~~~~~~i-----~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~ 72 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD-P--GGTYTIGRDSDNCDI-----VLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNG 72 (102)
T ss_pred eEEEEecCC-CceeEEEEC-C--CCeEEECcCCCcCCE-----EcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECC
Confidence 444444443 345777777 5 138999999998 76 999999999999999997 899999999999999999
Q ss_pred CCCceeecCCCCcEEcCCCCEEEECC
Q 006440 608 NEGRRYRVSSNFPARFRPSDTIEFGS 633 (645)
Q Consensus 608 ~~~~~~~l~~~~~~~l~~gd~i~~g~ 633 (645)
. ++.++.++.|.+||.|.||.
T Consensus 73 ~-----~~~~~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 73 Q-----RVSPGEPVRLRDGDVIRLGN 93 (102)
T ss_pred E-----ECCCCCcEECCCCCEEEECC
Confidence 9 88887889999999999997
No 65
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.33 E-value=5.5e-12 Score=132.44 Aligned_cols=83 Identities=29% Similarity=0.555 Sum_probs=73.7
Q ss_pred CCCCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCc--ccccceEEEEECCEEEEEECCCCcceeec--CCCCceeecC
Q 006440 541 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVS 616 (645)
Q Consensus 541 ~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~--vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn--~~~~~~~~l~ 616 (645)
....+.+. .. ..+|||++.|++ +++++. ||+.||+|.++++.|+|+|+ |+|||||| +. ++.
T Consensus 15 ~~~~~~f~-~~---~~~IGR~~~~d~-----~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~ 79 (396)
T TIGR03354 15 IAAQKTFG-TN---GGTIGRSEDCDW-----VLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLG 79 (396)
T ss_pred cceEEEEC-CC---CEEEecCCCCCE-----EeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCC
Confidence 34567777 66 899999999998 999988 99999999999999999998 99999999 77 898
Q ss_pred CCCcEEcCCCCEEEECCCceEEe
Q 006440 617 SNFPARFRPSDTIEFGSDKKVMN 639 (645)
Q Consensus 617 ~~~~~~l~~gd~i~~g~~~~~~~ 639 (645)
++.+++|++||+|+||.. .+.+
T Consensus 80 ~~~~~~L~~GD~I~iG~~-~lrv 101 (396)
T TIGR03354 80 RGNPVRLEQGDRLRLGDY-EIRV 101 (396)
T ss_pred CCCceEcCCCCEEEECCE-EEEE
Confidence 888999999999999987 4444
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.24 E-value=6.4e-11 Score=118.32 Aligned_cols=136 Identities=26% Similarity=0.345 Sum_probs=87.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccc-----eeeCchHHHHHHhcChhHHHHHHHhccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~l~~l~~g~~~~~~~~~~~ 150 (645)
..+||+||||||+|+++|+.|++.|++|+|+|+...... +...++ +.+...+..+|++++ +
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg--g~~~gg~~~~~~~v~~~~~~~l~~~g--v---------- 89 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG--GMWGGGMLFNKIVVQEEADEILDEFG--I---------- 89 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC--ccccCccccccccchHHHHHHHHHCC--C----------
Confidence 468999999999999999999999999999999754311 111111 111222222222221 0
Q ss_pred cccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCC-eEE-EEEc
Q 006440 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD-KVS-VVLE 226 (645)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~-~v~-v~~~ 226 (645)
.+ .. . ..+ .+.+++..+...|.+.+. ...++.+++|+++..+++ .+. +...
T Consensus 90 ---~~---~~---------~-------~~g---~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~ 144 (257)
T PRK04176 90 ---RY---KE---------V-------EDG---LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVIN 144 (257)
T ss_pred ---Cc---ee---------e-------cCc---ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEc
Confidence 00 00 0 001 246788888888887652 235888999999886555 332 2221
Q ss_pred -----------CCcEEeccEEEEccCCchhhhhhh
Q 006440 227 -----------NGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 227 -----------~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
+..+++|++||.|+|.+|.+.+.+
T Consensus 145 ~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 145 WTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred cccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 224799999999999999999988
No 67
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.21 E-value=2.2e-09 Score=122.62 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=51.2
Q ss_pred EeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
..++...+.+.|.+.+.. ..++++++|++++.+++++.|.+.+|..++++.||.|+|.+|.
T Consensus 403 G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 457888899999887653 3477899999999888888888888877899999999999985
No 68
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.20 E-value=5.5e-11 Score=120.76 Aligned_cols=157 Identities=21% Similarity=0.238 Sum_probs=93.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc-----CCCCcccceeeCchHHHHHHhcC---hhHHHHHHHh
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-----GEGQYRGPIQIQSNALAALEAID---LDVAEEVMRA 147 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-----~~g~~~~~~~l~~~~~~~l~~l~---~g~~~~~~~~ 147 (645)
+.+||+|||||||||+||..++++|++|+|+|+.+...+ +.|.+. +.-....-+++.+.+ .-+...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN--~Tn~~~~~~~ls~~p~~~~fl~sal~~- 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCN--FTNSEAPDEFLSRNPGNGHFLKSALAR- 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcc--ccccccHHHHHHhCCCcchHHHHHHHh-
Confidence 468999999999999999999999999999999875432 222111 111111233344432 001111110
Q ss_pred ccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEE
Q 006440 148 GCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL 225 (645)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~ 225 (645)
.....+..+.... |-.+. ....|.-+...-.-..+.++|..++. ...++.+++|.+++.++.+..+.+
T Consensus 79 --ft~~d~i~~~e~~-Gi~~~-------e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t 148 (408)
T COG2081 79 --FTPEDFIDWVEGL-GIALK-------EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT 148 (408)
T ss_pred --CCHHHHHHHHHhc-CCeeE-------EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence 0111111111110 00000 01112111112233466777766653 335889999999999998999999
Q ss_pred cCCcEEeccEEEEccCCchh
Q 006440 226 ENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 226 ~~g~~i~a~lvVgADG~~S~ 245 (645)
.+|++++||-+|.|.|..|.
T Consensus 149 ~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 149 SSGETVKCDSLILATGGKSW 168 (408)
T ss_pred CCCCEEEccEEEEecCCcCC
Confidence 99999999999999998875
No 69
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.18 E-value=3e-10 Score=113.13 Aligned_cols=136 Identities=21% Similarity=0.331 Sum_probs=86.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccce-----eeCchHHHHHHhcChhHHHHHHHhccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~l~~l~~g~~~~~~~~~~~ 150 (645)
..+||+||||||+|+++|+.|+++|++|+|+||...... +.+.++. .+...+.++++.++ +
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Gg--g~~~gg~~~~~~~~~~~~~~~l~~~g--i---------- 85 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG--GSWGGGMLFSKIVVEKPAHEILDEFG--I---------- 85 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc--cccCCCcceecccccchHHHHHHHCC--C----------
Confidence 468999999999999999999999999999999864321 1111111 11111122222210 0
Q ss_pred cccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCC--eE-EEEE
Q 006440 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD--KV-SVVL 225 (645)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~--~v-~v~~ 225 (645)
. +. ..+.. .+..++..+.+.|.+++. ...++.+++++++..+++ .+ -|..
T Consensus 86 ---~---------------~~------~~~~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~ 140 (254)
T TIGR00292 86 ---R---------------YE------DEGDG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVI 140 (254)
T ss_pred ---C---------------ee------eccCc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEe
Confidence 0 00 00001 134577888888877652 235888999999887665 22 2332
Q ss_pred c-----------CCcEEeccEEEEccCCchhhhhhh
Q 006440 226 E-----------NGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 226 ~-----------~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
. +..+++|++||.|+|..|.+.+.+
T Consensus 141 ~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 141 NWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 2 234799999999999999999887
No 70
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.18 E-value=4.6e-11 Score=114.55 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=65.1
Q ss_pred CEEEcCCCCCCCCcceeeeCCCcccccceEEEEECCEEEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEECCC
Q 006440 555 PYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 634 (645)
Q Consensus 555 ~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~ 634 (645)
.++|||++.+++ ++++..|||+||.|.++++.++++|++|+||||||+. ++.+ .+.|.+||.|.||..
T Consensus 90 ~~tigr~~~~~i-----~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDI-----VLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCE-----EcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEECcc
Confidence 799999888887 9999999999999999999999999999999999999 7764 689999999999988
Q ss_pred ce
Q 006440 635 KK 636 (645)
Q Consensus 635 ~~ 636 (645)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 55
No 71
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.17 E-value=3.9e-11 Score=111.00 Aligned_cols=98 Identities=30% Similarity=0.458 Sum_probs=77.0
Q ss_pred HhcCCcEEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCcccccceEEEEEC------C-------
Q 006440 524 RAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD------G------- 590 (645)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~------~------- 590 (645)
..+...|-|.+....... .+..+.-.. .+++||... ..+|.++++++|++||+|++.. +
T Consensus 168 rkP~kRwrLy~fk~~e~l-~~l~iHrqs---~yL~gRerk----IaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrv 239 (293)
T KOG1882|consen 168 RKPKKRWRLYPFKCYEVL-PVLYIHRQS---CYLDGRERK----IADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRV 239 (293)
T ss_pred cCchhheecccccCCccc-chheeeeee---eeecCceee----eeccCCCCccccccceeeeeeecccccCCCccceee
Confidence 344567988887665433 455555234 899999443 2344999999999999998862 2
Q ss_pred EEEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEECCC
Q 006440 591 AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 634 (645)
Q Consensus 591 ~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~ 634 (645)
..||.||+|.||||||.. +|.|...++|..+|+|.||-.
T Consensus 240 kpYiiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 240 KPYIIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred eeEEEecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 489999999999999999 999999999999999999954
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.15 E-value=1.5e-09 Score=114.56 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=94.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeC---ch--HHHHHHhcChhHHHHHHHhcccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQ---SN--ALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~---~~--~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
||+|||||++|+++|+.|+++|++|+|+|+.......++...+.+.-. .. ...-|.......|.++.........
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 799999999999999999999999999999843222222221112111 11 1111111112344444332211110
Q ss_pred --c--ccccc-cc--------------CCCc--eeee-------ccCCCchhh--cCCCeEEeeCHHHHHHHHHHHcC--
Q 006440 154 --R--INGLV-DG--------------ISGS--WYIK-------FDTFTPAAE--KGLPVTRVISRMTLQQILAKAVG-- 201 (645)
Q Consensus 154 --~--~~~~~-~~--------------~~~~--~~~~-------~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~-- 201 (645)
. ...+. +. ..+. .... ++...+... .-.+.+..++...+.+.|.+.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 0 00000 00 0000 0000 000000000 00133567888899998887652
Q ss_pred CceEEcCceEEEEEeeCCeEE-EEEcCCcEEeccEEEEccCCchhh
Q 006440 202 DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 246 (645)
Q Consensus 202 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~v 246 (645)
...++.+++|+++..+++.++ |.+.+|+ ++||.||.|.|.+|.-
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 235888999999999999998 9999997 9999999999998865
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.15 E-value=9.4e-09 Score=111.00 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=43.2
Q ss_pred eCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCC-----cEEeccEEEEccCCchh
Q 006440 187 ISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSK 245 (645)
Q Consensus 187 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~i~a~lvVgADG~~S~ 245 (645)
++-..+...|.+.+. ...++.+++|++++.+++.+++.+.++ .+++||.||.|.|.+|.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 444566666665542 235788899999998888877765443 37999999999999985
No 74
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.14 E-value=5.2e-09 Score=111.79 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=50.2
Q ss_pred EEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCc-hhhhhhh
Q 006440 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 250 (645)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~-S~vR~~l 250 (645)
...++...+.+.|.+.+. ...++.+++|++++.+++.+.|.+.++ ++++|.||.|.|.+ |.+++.+
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 346788888888876542 234778899999998888888887766 79999888888876 6677665
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.12 E-value=1.2e-08 Score=108.85 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=45.0
Q ss_pred eeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 186 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 186 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
.++...+...+.+.+. ...++.+++|++++.+++++.|++++| ++++|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 4565666665554432 234778999999998888888888777 7999999999999864
No 76
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.07 E-value=1.5e-10 Score=85.33 Aligned_cols=48 Identities=44% Similarity=0.754 Sum_probs=44.2
Q ss_pred EEEcCCC-CCCCCcceeeeCCCcccccceEEEEECC-EEEEEECCCCcceeecCC
Q 006440 556 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDN 608 (645)
Q Consensus 556 ~~iGR~~-~~~~~~~~~~~~~~~vSr~Ha~i~~~~~-~~~i~D~~S~nGt~vn~~ 608 (645)
++|||.+ .|++ +++++.|||.||+|.++.+ .|+|+|++|+||||||++
T Consensus 1 ~~iGr~~~~~~i-----~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSEDCDI-----QLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCCCCE-----EeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 4799999 8887 9999999999999999866 499999999999999997
No 77
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.05 E-value=1.3e-09 Score=102.15 Aligned_cols=136 Identities=23% Similarity=0.304 Sum_probs=83.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCccc-----ceeeCchHHHHHHhcChhHHHHHHHhccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG-----PIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~~~~~l~~l~~g~~~~~~~~~~~ 150 (645)
.++||+||||||+||++|+.|++.|++|.++|++..+. .+.+.+ .+.++..+..+|+++ |+.-
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G--Gg~~~Gg~lf~~iVVq~~a~~iL~el--gi~y-------- 83 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG--GGMWGGGMLFNKIVVQEEADEILDEL--GIPY-------- 83 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B--TTTTS-CTT---EEEETTTHHHHHHH--T-----------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC--ccccccccccchhhhhhhHHHHHHhC--Ccee--------
Confidence 36899999999999999999999999999999975432 121211 355677778888877 3210
Q ss_pred cccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc-C-CceEEcCceEEEEEeeC-CeEE---EE
Q 006440 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-G-DEIILNESNVIDFKDHG-DKVS---VV 224 (645)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~-~~~i~~~~~v~~i~~~~-~~v~---v~ 224 (645)
.+. + +..++.+-.++...|..++ . ...++....|.++...+ +.+. +.
T Consensus 84 --------~~~------------------~-~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViN 136 (230)
T PF01946_consen 84 --------EEY------------------G-DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVIN 136 (230)
T ss_dssp --------EE-------------------S-SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEE
T ss_pred --------EEe------------------C-CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEE
Confidence 000 0 1135667777888776654 3 23477778888876655 4443 22
Q ss_pred Ec---------CCcEEeccEEEEccCCchhhhhhh
Q 006440 225 LE---------NGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 225 ~~---------~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
.. |.-+++|++||.|+|..+.+-+.+
T Consensus 137 Wt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 137 WTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp EHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred ehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 21 224799999999999988766554
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.3e-09 Score=97.87 Aligned_cols=134 Identities=25% Similarity=0.354 Sum_probs=89.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccc-----eeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~l~~l~~g~~~~~~~~~~~~ 151 (645)
..||+||||||+||++|+.|+++|.+|+|+|++..+ +.|.+.++ +.++..+.++|++++ +.-+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~--GGG~w~GGmlf~~iVv~~~a~~iL~e~g--I~ye~------- 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF--GGGIWGGGMLFNKIVVREEADEILDEFG--IRYEE------- 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc--CCcccccccccceeeecchHHHHHHHhC--Cccee-------
Confidence 469999999999999999999999999999997543 22333332 445666666777662 21000
Q ss_pred ccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCC-eEE---EE
Q 006440 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGD-KVS---VV 224 (645)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~-~v~---v~ 224 (645)
.+.+ .++.+-.++...|..++ + ..|+.+..|.++...++ ++. +.
T Consensus 99 -------------------------~e~g---~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~rVaGvVvN 149 (262)
T COG1635 99 -------------------------EEDG---YYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDPRVAGVVVN 149 (262)
T ss_pred -------------------------cCCc---eEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCCceEEEEEe
Confidence 0001 24566667777776653 3 34666788888765555 332 22
Q ss_pred E---------cCCcEEeccEEEEccCCchhhhhhh
Q 006440 225 L---------ENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 225 ~---------~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
. -|--++++++||.|.|....|-+.+
T Consensus 150 Wt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 150 WTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1 1334799999999999998887766
No 79
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.99 E-value=7e-09 Score=111.26 Aligned_cols=173 Identities=19% Similarity=0.262 Sum_probs=95.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCcccc-CCCCcccce----eeCchH-HHHHHhcChhHHHHHHHhc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIR-GEGQYRGPI----QIQSNA-LAALEAIDLDVAEEVMRAG 148 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~-~~g~~~~~~----~l~~~~-~~~l~~l~~g~~~~~~~~~ 148 (645)
.+||+|||||++|+++|+.|+++ |++|+|+|+...... .++.+.+.+ ...+.. ...|...+..+|.++.+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999 999999999753221 122111111 112222 1122222223444443221
Q ss_pred cccc---ccccccccc--------------CCCceeeeccC---------CCchhhcCCCeEEeeCHHHHHHHHHHHcC-
Q 006440 149 CVTG---DRINGLVDG--------------ISGSWYIKFDT---------FTPAAEKGLPVTRVISRMTLQQILAKAVG- 201 (645)
Q Consensus 149 ~~~~---~~~~~~~~~--------------~~~~~~~~~~~---------~~~~~~~~~~~~~~i~r~~l~~~L~~~~~- 201 (645)
...- ..+....+. ..+.....++. .......-.|....++...+.+.|.+.+.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 1000 000000000 00000000000 00000001133457788889888887653
Q ss_pred -CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh-hhhhh
Q 006440 202 -DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (645)
Q Consensus 202 -~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~l 250 (645)
...++++++|++++.+++++.|.+.+| +++||.||.|+|.+|. +.+.+
T Consensus 162 ~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHh
Confidence 235788999999988888888887776 7999999999999984 44433
No 80
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=9.1e-08 Score=105.75 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=93.8
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHH-------HHH
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-------VMR 146 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~-------~~~ 146 (645)
++..+||+|||||++|+++|+.|+++|++|+|+|+.......++. ...+-..+.+.+...+..+..+ +..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~---ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~ 79 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSR---SGKLVHGGLRYLEYYEFRLVREALIEREVLLA 79 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchh---hhhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999998532211111 1112233344444332222221 111
Q ss_pred hccc--cccccc---------cc--------cccCC------CceeeeccCC---Cch-hh--cCC-CeEEeeCHHHHHH
Q 006440 147 AGCV--TGDRIN---------GL--------VDGIS------GSWYIKFDTF---TPA-AE--KGL-PVTRVISRMTLQQ 194 (645)
Q Consensus 147 ~~~~--~~~~~~---------~~--------~~~~~------~~~~~~~~~~---~~~-~~--~~~-~~~~~i~r~~l~~ 194 (645)
.... ....+. .+ .+... ....+..... .+. .. .++ +....++...|..
T Consensus 80 ~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~ 159 (502)
T PRK13369 80 AAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVV 159 (502)
T ss_pred hCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHH
Confidence 1100 000000 00 00000 0000000000 000 00 000 1123467777777
Q ss_pred HHHHHc--CCceEEcCceEEEEEeeCCeEEEEEcCC----cEEeccEEEEccCCchh-hhhhh
Q 006440 195 ILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSK-VRKNL 250 (645)
Q Consensus 195 ~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i~a~lvVgADG~~S~-vR~~l 250 (645)
.|...+ ....++.+++|+++..+++.+.|++.++ .+++|++||.|+|.+|. +.+.+
T Consensus 160 ~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 160 LNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred HHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 776554 2235788899999998887777777664 36999999999999985 44433
No 81
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.95 E-value=2.3e-07 Score=100.37 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=43.7
Q ss_pred eeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEE-EEEcCCcEEeccEEEEccCCchh
Q 006440 186 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 186 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
.++-..+.+.|.+.+. ...++.+++|++++.+++.+. |+..+ .+++||.||.|.|.+|.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG-GVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC-cEEeCCEEEECCCcchH
Confidence 4556677777766542 234788899999988777754 55554 47999999999999985
No 82
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-09 Score=110.59 Aligned_cols=69 Identities=35% Similarity=0.468 Sum_probs=63.7
Q ss_pred CEEEcCCCCCCCCcceeeeCCC--cccccceEEEEECCEEEEEECCCCcceeecCCCCceeecCCCCc-EEcCCCCEEEE
Q 006440 555 PYLIGSESHEDFSRTSIVIPSA--QVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-ARFRPSDTIEF 631 (645)
Q Consensus 555 ~~~iGR~~~~~~~~~~~~~~~~--~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~-~~l~~gd~i~~ 631 (645)
..+|||+++|+- .|+|+ .||+.||+|.++++.|+|+|. |.||||||+. .+..+.. .+|..||+|.+
T Consensus 27 ~g~IGrs~dcdW-----~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~i~i 95 (430)
T COG3456 27 GGVIGRSPDCDW-----QIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDEILI 95 (430)
T ss_pred CcccccCCCCCc-----cccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCEEee
Confidence 789999999999 77665 699999999999999999996 7999999999 8888888 99999999999
Q ss_pred CCC
Q 006440 632 GSD 634 (645)
Q Consensus 632 g~~ 634 (645)
|.-
T Consensus 96 G~y 98 (430)
T COG3456 96 GRY 98 (430)
T ss_pred ccE
Confidence 976
No 83
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.94 E-value=1.7e-07 Score=101.10 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCCCCCcCcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeccCc
Q 006440 71 SDSENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (645)
Q Consensus 71 ~~~~~~~~~v~i~g~g~~g~~~a~~l~~~-g~-~~~~~~~~~~ 111 (645)
.++....+||+|||||++|+++|+.|+++ |. +|+|+|+...
T Consensus 24 ~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 24 SPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 33444578999999999999999999995 96 8999999753
No 84
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.93 E-value=4e-09 Score=111.97 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=73.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc-----CCCCcccc-------eeeC------chHHHHHHhcCh-
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-----GEGQYRGP-------IQIQ------SNALAALEAIDL- 138 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-----~~g~~~~~-------~~l~------~~~~~~l~~l~~- 138 (645)
|||+|||||||||+||+.|++.|.+|+|+|+.....+ +.|.+.-. .... ......|++.+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6999999999999999999999999999999864321 11211000 0010 112234444421
Q ss_pred hHHHHHHHhccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEe
Q 006440 139 DVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD 216 (645)
Q Consensus 139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~ 216 (645)
.+.+-+.+.+.. . .... .+..+...-.-..+.++|.+.+. ...++++++|.+++.
T Consensus 81 d~~~ff~~~Gv~----~---~~~~----------------~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 81 DLIAFFEELGVP----T---KIEE----------------DGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK 137 (409)
T ss_dssp HHHHHHHHTT------E---EE-S----------------TTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE
T ss_pred HHHHHHHhcCCe----E---EEcC----------------CCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee
Confidence 111111111110 0 0000 11111111223456666666542 234889999999998
Q ss_pred eCCe-EEEEEcCCcEEeccEEEEccCCchh
Q 006440 217 HGDK-VSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 217 ~~~~-v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
++++ +.|.+++++++.||-||.|.|..|.
T Consensus 138 ~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 8877 7888877889999999999998774
No 85
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.93 E-value=1.9e-08 Score=110.27 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=87.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCC--CcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEG--QYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g--~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
+..+||+|||||+||+.+|+.+++.|.+|.|+|++....-.-+ ..-+++. .....+-++.++ ++.......... .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~a-kg~lvrEidalG-g~~g~~~d~~gi-q 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIA-KGHLVREIDALG-GEMGKAIDKTGI-Q 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccch-hhHHHHHHHhcC-CHHHHHHhhccC-c
Confidence 3469999999999999999999999999999998742210000 0000110 001122233443 232222222111 0
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEE-EEEcCC
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENG 228 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~~g 228 (645)
..+ .....+. .. ..+ ...+++..+.+.|.+.+. +..+ +..+|+++..+++.+. |.+.+|
T Consensus 79 ~r~---ln~skGp----------AV--~s~-RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG 141 (618)
T PRK05192 79 FRM---LNTSKGP----------AV--RAL-RAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDG 141 (618)
T ss_pred eee---cccCCCC----------ce--eCc-HHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCC
Confidence 000 0000000 00 000 125788888888877653 2234 4678888877666654 788889
Q ss_pred cEEeccEEEEccCCchh
Q 006440 229 QCYAGDLLIGADGIWSK 245 (645)
Q Consensus 229 ~~i~a~lvVgADG~~S~ 245 (645)
..+.|+.||.|+|.++.
T Consensus 142 ~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 142 LEFRAKAVVLTTGTFLR 158 (618)
T ss_pred CEEECCEEEEeeCcchh
Confidence 99999999999998653
No 86
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.92 E-value=2e-07 Score=102.93 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=44.0
Q ss_pred eeCHHHHHHHHHHHc--CCceEEcCceEEEEEeeCCeEEEEEcC---Cc--EEeccEEEEccCCchh
Q 006440 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 245 (645)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~--~i~a~lvVgADG~~S~ 245 (645)
.++...|...|...+ ....++.+++|+++..+++.+.|++.+ |+ +++|+.||.|+|.++.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 456666666665443 223477889999998887777777654 43 6999999999999884
No 87
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.89 E-value=2.1e-07 Score=94.13 Aligned_cols=306 Identities=18% Similarity=0.147 Sum_probs=153.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHH------CCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHh-
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKR------KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRA- 147 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~------~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~- 147 (645)
...+||+|||||||||++|+.|.+ +.++|.|+|+..... |..-.+-.+.|.++.- |- --|.+.-..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---ghtlSGaviep~aldE---L~-P~wke~~apl 146 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---GHTLSGAVIEPGALDE---LL-PDWKEDGAPL 146 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---Cceecceeeccchhhh---hC-cchhhcCCcc
Confidence 346899999999999999999976 367999999975431 1111122355544432 21 111111000
Q ss_pred -ccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCe-E-
Q 006440 148 -GCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDK-V- 221 (645)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v- 221 (645)
.....+.+. + .++...+..+...+....| .|++.-..|.++|-+.+ +.+ |..+..+.++..++++ |
T Consensus 147 ~t~vT~d~~~-f---Lt~~~~i~vPv~~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvE-iyPg~aaSevly~edgsVk 218 (621)
T KOG2415|consen 147 NTPVTSDKFK-F---LTGKGRISVPVPSPMDNHG---NYVVSLGQLVRWLGEKAEELGVE-IYPGFAASEVLYDEDGSVK 218 (621)
T ss_pred ccccccccee-e---eccCceeecCCCcccccCC---cEEEEHHHHHHHHHHHHHhhCce-eccccchhheeEcCCCcEe
Confidence 011122222 1 1122223333222222223 47888999999997765 333 4444444444333322 1
Q ss_pred ---------------EEEEcCCcEEeccEEEEccCCchhhhhhhcC---CCCCcccCeEEEEEE---eccCCCCcccc--
Q 006440 222 ---------------SVVLENGQCYAGDLLIGADGIWSKVRKNLFG---PQEAIYSGYTCYTGI---ADFVPADIESV-- 278 (645)
Q Consensus 222 ---------------~v~~~~g~~i~a~lvVgADG~~S~vR~~l~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~-- 278 (645)
.-+|+.|-.+.|+..|-|.|.+..+-++++. .....-.|.+ -.++ ....+..+...
T Consensus 219 GiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtY-glGlKEvWei~~~~~~pG~v 297 (621)
T KOG2415|consen 219 GIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTY-GLGLKEVWEIDPENHNPGEV 297 (621)
T ss_pred eEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCccee-ccccceeEecChhhcCCcce
Confidence 1233344578999999999999998888732 1111111111 1121 11122222211
Q ss_pred ----ceEEEec-CceEEEEeecCCCeEE--EEEEEeCCCCCCCCCcchHHHHHHHHcCCChhHHHHHHcCCccceeeccc
Q 006440 279 ----GYRVFLG-HKQYFVSSDVGAGKMQ--WYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI 351 (645)
Q Consensus 279 ----~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (645)
+|.+-.. .++.| ++...+..+. .++...... +--....+++++- .+|.+.+.+.......+-.+.+
T Consensus 298 ~HT~GwPl~~~tYGGsF-lYh~~d~~VavGlVVgLdY~N----P~lsP~~EFQk~K--~hP~i~~vleGgk~i~YgARaL 370 (621)
T KOG2415|consen 298 AHTLGWPLDNDTYGGSF-LYHFNDPLVAVGLVVGLDYKN----PYLSPYKEFQKMK--HHPSISKVLEGGKRIAYGARAL 370 (621)
T ss_pred eeeccCcccCCccCcee-EEEcCCCeEEEEEEEEecCCC----CCCCHHHHHHHhh--cCcchhhhhcCcceeeehhhhh
Confidence 1111000 01111 2222233222 222111111 1112233443332 2355555554433322222222
Q ss_pred cc--CCCCCcccCCcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHHHHHhhc
Q 006440 352 YD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 403 (645)
Q Consensus 352 ~~--~~~~~~~~~~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~ 403 (645)
.. ....+..+..+=+|||=+|..++---=-|..+||.++...|+.+-+++.+
T Consensus 371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~ 424 (621)
T KOG2415|consen 371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKG 424 (621)
T ss_pred ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhc
Confidence 21 11223445567789999999999888899999999999999999988865
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.88 E-value=7.1e-09 Score=100.30 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=71.5
Q ss_pred EEEcCCHHHHHHHHHHHHCCCe-EEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccccc
Q 006440 81 LVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLV 159 (645)
Q Consensus 81 ~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~ 159 (645)
+||||||+|+++|..|.++|++ |+|+|+...+ | |.|.............. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~----G---------------------g~w~~~~~~~~~~~~~~---~ 52 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP----G---------------------GVWRRYYSYTRLHSPSF---F 52 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS----T---------------------THHHCH-TTTT-BSSSC---C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC----C---------------------CeeEEeCCCCccccCcc---c
Confidence 6999999999999999999999 9999987431 1 22221111000000000 0
Q ss_pred ccCCCceeeeccCCCchhh-cCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccE
Q 006440 160 DGISGSWYIKFDTFTPAAE-KGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (645)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 235 (645)
....+ ...+........ ..........+.++.+.|.+.+ +.. ++++++|++++.++++|.|+++++++++|+.
T Consensus 53 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~-i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~ 129 (203)
T PF13738_consen 53 SSDFG--LPDFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE-IRFNTRVESVRRDGDGWTVTTRDGRTIRADR 129 (203)
T ss_dssp TGGSS----CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG-EETS--EEEEEEETTTEEEEETTS-EEEEEE
T ss_pred ccccc--CCcccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc-cccCCEEEEEEEeccEEEEEEEecceeeeee
Confidence 00000 000000000000 0000011245666777765543 333 8899999999999999999999998899999
Q ss_pred EEEccCCchhh
Q 006440 236 LIGADGIWSKV 246 (645)
Q Consensus 236 vVgADG~~S~v 246 (645)
||.|.|..|.-
T Consensus 130 VVlAtG~~~~p 140 (203)
T PF13738_consen 130 VVLATGHYSHP 140 (203)
T ss_dssp EEE---SSCSB
T ss_pred EEEeeeccCCC
Confidence 99999986653
No 89
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.85 E-value=2.1e-08 Score=105.54 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=98.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeccCccccCCC-----CcccceeeCchHHHH-HHhcChhHHHHHHHh
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEG-----QYRGPIQIQSNALAA-LEAIDLDVAEEVMRA 147 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~~~~~~g-----~~~~~~~l~~~~~~~-l~~l~~g~~~~~~~~ 147 (645)
..+||+|||||+.|+++|+.|++++ ++|+|+||.......+. ..+.++...|..+.+ +...+--.+.++.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 99999999765433221 112233344442221 111110111122111
Q ss_pred cccccccccc--c-cc-------------c-CCCce-eeeccC-----CCchh------hcCCCeEEeeCHHHHHHHHHH
Q 006440 148 GCVTGDRING--L-VD-------------G-ISGSW-YIKFDT-----FTPAA------EKGLPVTRVISRMTLQQILAK 198 (645)
Q Consensus 148 ~~~~~~~~~~--~-~~-------------~-~~~~~-~~~~~~-----~~~~~------~~~~~~~~~i~r~~l~~~L~~ 198 (645)
.......... + +. . ..+-. ...++. ..|.- ..-.|.+..|+-..+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1100000000 0 00 0 00000 000000 00000 011233567888888888877
Q ss_pred HcC--CceEEcCceEEEEEeeCCe-EEEEEcCCcE-EeccEEEEccCCchhhhhhh
Q 006440 199 AVG--DEIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 199 ~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~-i~a~lvVgADG~~S~vR~~l 250 (645)
.+. ...++++++|++++..+++ ..+.+.+|++ ++|++||.|-|..|----.+
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~ 217 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQM 217 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHH
Confidence 652 3358999999999999884 5677778866 99999999999988643333
No 90
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.79 E-value=2.1e-09 Score=114.80 Aligned_cols=74 Identities=28% Similarity=0.532 Sum_probs=68.2
Q ss_pred CCEEEcCCCCCCCCcceeeeCCCcccccceEEEEE--CC---------EEEEEECCCCcceeecCCCCceeecCCCCcEE
Q 006440 554 EPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DG---------AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 622 (645)
Q Consensus 554 ~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~--~~---------~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~ 622 (645)
..++|||...||+ .+.+++|||.||.|.+. +- .|+|.||+||+|||+|.. |++|...+.
T Consensus 177 ~~~~fgr~~~cD~-----~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yir 246 (793)
T KOG1881|consen 177 AACLFGRLGGCDV-----ALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYIR 246 (793)
T ss_pred eeEEecccCCCcc-----ccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchhh
Confidence 3799999999999 99999999999999986 22 399999999999999999 999999999
Q ss_pred cCCCCEEEECCCceE
Q 006440 623 FRPSDTIEFGSDKKV 637 (645)
Q Consensus 623 l~~gd~i~~g~~~~~ 637 (645)
++.|++++||....+
T Consensus 247 ~~Vg~v~~fggsTrl 261 (793)
T KOG1881|consen 247 DRVGHVARFGGSTRL 261 (793)
T ss_pred hhHHHHHHhcCceEE
Confidence 999999999998666
No 91
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.77 E-value=7.7e-07 Score=95.27 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=47.8
Q ss_pred EeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhhhh
Q 006440 185 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 248 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~ 248 (645)
..++...+.+.|.+.+ +...+..++.++.++.+...+.|.+.+|+ +.|+.||.|.|.++..--
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 4567777888887765 33457778899988874355778888886 999999999999987544
No 92
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.77 E-value=1.4e-07 Score=98.31 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=82.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCc--hHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS--NALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~--~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
||+|||||.||+.||+.+|+.|.+|+|+.........-+ +...+.-.. ...+-++.++ |..-.+.+..... .++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalg-g~m~~~aD~~~i~-~~~- 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALG-GLMGRAADETGIH-FRM- 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT--SHHHHHHHHEEE-EEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhh-hHHHHHHhHhhhh-hhc-
Confidence 799999999999999999999999999943222111100 000111111 1223455555 3332332221110 000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCeEE-EEEcCCcEEe
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVS-VVLENGQCYA 232 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~ 232 (645)
.+... ........+.++|..+.+.+.+.+.. ..+ ...+|+++..+++.+. |.+.+|+.+.
T Consensus 77 --lN~sk-------------Gpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~ 140 (392)
T PF01134_consen 77 --LNRSK-------------GPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIE 140 (392)
T ss_dssp --ESTTS--------------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEE
T ss_pred --ccccC-------------CCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEe
Confidence 00000 01111223589999999999887743 334 4679999988777754 8889999999
Q ss_pred ccEEEEccCC
Q 006440 233 GDLLIGADGI 242 (645)
Q Consensus 233 a~lvVgADG~ 242 (645)
+|.||.|+|.
T Consensus 141 a~~vVlaTGt 150 (392)
T PF01134_consen 141 ADAVVLATGT 150 (392)
T ss_dssp ECEEEE-TTT
T ss_pred cCEEEEeccc
Confidence 9999999999
No 93
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.76 E-value=5.6e-08 Score=93.28 Aligned_cols=142 Identities=23% Similarity=0.269 Sum_probs=81.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccc------c-CCCCcc-cceeeCchHHHHHHhcChhHHHHHHHhccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------R-GEGQYR-GPIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~------~-~~g~~~-~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~ 150 (645)
+|+|||+||+|++||..|+..|++|+|+||..... + ..|.++ ++-.+.++.-.+++.+ +.+.+.+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-----e~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-----EALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-----HHHHhCCce
Confidence 69999999999999999999999999999964211 0 111111 1233555554444433 233333321
Q ss_pred cc--cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC
Q 006440 151 TG--DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG 228 (645)
Q Consensus 151 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g 228 (645)
.. ..++.+.+.. .. ......|+...-.-..|-+.|...+ .+.++++|+.+...++.|+++.++|
T Consensus 78 ~~W~~~~~~~~~~~----------~~-~~~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~~~W~l~~~~g 143 (331)
T COG3380 78 DVWTPAVWTFTGDG----------SP-PRGDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTDNDWTLHTDDG 143 (331)
T ss_pred eeccccccccccCC----------CC-CCCCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecCCeeEEEecCC
Confidence 11 0111111100 00 0000111111222345666665544 3667999999999999999999776
Q ss_pred -cEEeccEEEEc
Q 006440 229 -QCYAGDLLIGA 239 (645)
Q Consensus 229 -~~i~a~lvVgA 239 (645)
+...+|.||.|
T Consensus 144 ~~~~~~d~vvla 155 (331)
T COG3380 144 TRHTQFDDVVLA 155 (331)
T ss_pred CcccccceEEEe
Confidence 45677777765
No 94
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.71 E-value=1.3e-07 Score=102.67 Aligned_cols=150 Identities=20% Similarity=0.209 Sum_probs=83.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcC---------hhHHHHHH
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAID---------LDVAEEVM 145 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~---------~g~~~~~~ 145 (645)
....+|+||||||+||++|..|.+.|++|+|+|+..... | .....+..-. +.++ ..+++.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G----~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~ 78 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---G----LWVYTPKSES--DPLSLDPTRSIVHSSVYESLR 78 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---c----eeecCCCcCC--CccccCCCCcccchhhhhhhh
Confidence 345789999999999999999999999999999975321 1 1111111100 0000 00111111
Q ss_pred HhccccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---Cc-eEEcCceEEEEEeeCCeE
Q 006440 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DE-IILNESNVIDFKDHGDKV 221 (645)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~-~i~~~~~v~~i~~~~~~v 221 (645)
.... .....+.+ ++.................+.++.+.|.+.+. .. .++++++|++++..++.|
T Consensus 79 tn~p---~~~m~f~d---------fp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w 146 (461)
T PLN02172 79 TNLP---RECMGYRD---------FPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKW 146 (461)
T ss_pred ccCC---HhhccCCC---------CCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeE
Confidence 1000 00000110 10000000000000012346678888877652 22 378999999999888889
Q ss_pred EEEEcCC--c--EEeccEEEEccCCchh
Q 006440 222 SVVLENG--Q--CYAGDLLIGADGIWSK 245 (645)
Q Consensus 222 ~v~~~~g--~--~i~a~lvVgADG~~S~ 245 (645)
.|+..++ . +..+|.||.|.|..+.
T Consensus 147 ~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 147 RVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred EEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 9988643 2 4579999999998653
No 95
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.70 E-value=1.3e-07 Score=102.82 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred CeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEee-CCeEEEEE---cCCc--EEeccEEEEccCCchh-hhhhh
Q 006440 182 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 250 (645)
Q Consensus 182 ~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~-~~~v~v~~---~~g~--~i~a~lvVgADG~~S~-vR~~l 250 (645)
|.+..|+...|.+.|.+.+. ...++++++|++++.+ +++|++++ .+++ +++||+||.|-|.+|. +.+.+
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 33557899999998887662 3468889999999877 66787763 3442 6899999999998884 44444
No 96
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.69 E-value=1.7e-07 Score=102.59 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred EeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
..++...+.+.|.+.+. ...++.+++|++++. ++.+.|++.+| +++||.||.|.|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 46788888888877652 235888999999975 45567777766 6999999999999864
No 97
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.68 E-value=2.3e-07 Score=98.56 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=41.9
Q ss_pred EeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 185 RVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
..++...+...|.+.+. ...++.+++|++++.. .|++.+| +++||.||.|.|.+|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 46777788888876542 3357788999999643 5666666 4789999999999874
No 98
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.66 E-value=1.8e-06 Score=97.45 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=45.5
Q ss_pred eeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeC--CeE-EEEE---cCCc--EEeccEEEEccCCchh-hhhhh
Q 006440 186 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHG--DKV-SVVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 250 (645)
Q Consensus 186 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v-~v~~---~~g~--~i~a~lvVgADG~~S~-vR~~l 250 (645)
.++-..|...|.+.+. ...++.+++|+++..++ +.+ .|+. .+++ +++++.||.|.|++|. +++.+
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 5688888888877653 23577788999998763 433 3443 2343 6899999999999986 55544
No 99
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.64 E-value=5.4e-07 Score=98.66 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=49.8
Q ss_pred CeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEeeCCe-EEEEEc---CCc--EEeccEEEEccCCch-hhhhhh
Q 006440 182 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLIGADGIWS-KVRKNL 250 (645)
Q Consensus 182 ~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~i~a~lvVgADG~~S-~vR~~l 250 (645)
|.+..++...+.+.|.+.+. ...++++++|++++.++++ |.+++. +|+ +++|++||.|.|.+| .+++.+
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~ 253 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS 253 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 33567899999999987763 2358889999999986554 766653 353 699999887777765 455554
No 100
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=4.7e-08 Score=105.73 Aligned_cols=148 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCc-hHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS-NALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~-~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
|||||||||+|+++|+.+++.|.+|+|+|+....- +.....+...+.. .... ... .|+..++.......... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lG-G~~t~~~~~~~~~~~~~~--~~~-~gi~~e~~~~~~~~~~~-~- 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLG-GMATSGGVSPFDGNHDED--QVI-GGIFREFLNRLRARGGY-P- 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSST-GGGGGSSS-EETTEEHHH--HHH-HHHHHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCC-CcceECCcCChhhcchhh--ccC-CCHHHHHHHHHhhhccc-c-
Confidence 89999999999999999999999999999875321 0100111111221 1111 111 15555555432110000 0
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEE-EEEcC--C-cEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLEN--G-QCY 231 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~--g-~~i 231 (645)
.. .. .+....+.+++..+...|.+.+. ...+++++.|+++..+++.+. |++.+ | .++
T Consensus 75 -~~-~~---------------~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i 137 (428)
T PF12831_consen 75 -QE-DR---------------YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEI 137 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cc-cc---------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00 00000012333344444433332 234888999999998875543 55443 3 579
Q ss_pred eccEEEEccCCchhhhhhh
Q 006440 232 AGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 232 ~a~lvVgADG~~S~vR~~l 250 (645)
+|+++|+|+|-. .+-...
T Consensus 138 ~A~~~IDaTG~g-~l~~~a 155 (428)
T PF12831_consen 138 RAKVFIDATGDG-DLAALA 155 (428)
T ss_dssp -------------------
T ss_pred cccccccccccc-cccccc
Confidence 999999999954 444333
No 101
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.60 E-value=3e-07 Score=102.42 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=44.2
Q ss_pred EeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEE-EEEc---CC--cEEeccEEEEccCCchh
Q 006440 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK 245 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~i~a~lvVgADG~~S~ 245 (645)
..++...|...|...+. ...++.+++|+++..+++++. |++. ++ .+++|+.||-|.|.+|.
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 36787788777766542 234788999999988776543 4442 23 47999999999999985
No 102
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=2.4e-07 Score=98.91 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHH----HHHHhcChhHHHHHHHhccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNAL----AALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~----~~l~~l~~g~~~~~~~~~~~ 150 (645)
+...+|+||||||+||++|..|.+.|++|+|+||.... | +-....+..- .+.+++ .-..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i----G---GlW~y~~~~~~~~ss~Y~~l--------~tn~-- 66 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI----G---GLWKYTENVEVVHSSVYKSL--------RTNL-- 66 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc----c---ceEeecCcccccccchhhhh--------hccC--
Confidence 34679999999999999999999999999999997532 1 0111111111 111111 1100
Q ss_pred cccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC----ceEEcCceEEEEEeeC-CeEEEEE
Q 006440 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVL 225 (645)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-~~v~v~~ 225 (645)
......+.+ |+. ... .+ .+..++.++.++|...+.. ..|.++++|..++... +.|.|..
T Consensus 67 -pKe~~~~~d---------fpf---~~~--~~-~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~ 130 (448)
T KOG1399|consen 67 -PKEMMGYSD---------FPF---PER--DP-RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTT 130 (448)
T ss_pred -ChhhhcCCC---------CCC---ccc--Cc-ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEE
Confidence 001111111 110 000 11 2345677899999877642 2488999999999888 6899998
Q ss_pred cCC----cEEeccEEEEccCCc
Q 006440 226 ENG----QCYAGDLLIGADGIW 243 (645)
Q Consensus 226 ~~g----~~i~a~lvVgADG~~ 243 (645)
.++ +..-+|.||.|.|-+
T Consensus 131 ~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 131 KDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ecCCcceeEEEeeEEEEcccCc
Confidence 765 367799999999998
No 103
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.57 E-value=6.3e-07 Score=96.05 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=78.8
Q ss_pred EEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccc-eeeCc-h-HHHHHHhcCh--hHHHHHHHhcccccccc
Q 006440 81 LVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-IQIQS-N-ALAALEAIDL--DVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 81 ~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-~~l~~-~-~~~~l~~l~~--g~~~~~~~~~~~~~~~~ 155 (645)
+|||||++|+++|+.|+++|++|+|+|+.+.........+++ ..+.. . ....++..+. .......... .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~--~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRF--SNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhC--CHHHH
Confidence 699999999999999999999999999976432211111111 11111 0 1111122110 0111100000 00000
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 233 (645)
..+... .+-.... ...+..+...-....+.+.|.+.+. ...++.+++|++++.+++.+.+++ +++++.+
T Consensus 79 ~~~~~~-~Gv~~~~-------~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~a 149 (400)
T TIGR00275 79 IDFFES-LGLELKV-------EEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEA 149 (400)
T ss_pred HHHHHH-cCCeeEE-------ecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEc
Confidence 000000 0000000 0001100011123456666665542 235788999999988777777777 4568999
Q ss_pred cEEEEccCCch
Q 006440 234 DLLIGADGIWS 244 (645)
Q Consensus 234 ~lvVgADG~~S 244 (645)
|.||.|+|..|
T Consensus 150 d~VIlAtG~~s 160 (400)
T TIGR00275 150 DKVILATGGLS 160 (400)
T ss_pred CEEEECCCCcc
Confidence 99999999987
No 104
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.57 E-value=2.6e-07 Score=101.77 Aligned_cols=138 Identities=22% Similarity=0.246 Sum_probs=79.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||++||++|..|.+.|++++++|+.+. .| |+|..-..... ....++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~----iG---------------------G~W~~~~~~~~-g~~~~y~ 55 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD----IG---------------------GLWRYTENPED-GRSSVYD 55 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS----SS---------------------GGGCHSTTCCC-SEGGGST
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC----CC---------------------ccCeeCCcCCC-Ccccccc
Confidence 4799999999999999999999999999999752 12 33311000000 0000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC----ceEEcCceEEEEEeeC-----CeEEEEEcC-
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-----DKVSVVLEN- 227 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-----~~v~v~~~~- 227 (645)
...-...+....|..+.. ..++| ...++.++.++|...+.. ..|+++++|++++..+ +.|.|+.++
T Consensus 56 sl~~n~sk~~~~fsdfp~--p~~~p--~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~ 131 (531)
T PF00743_consen 56 SLHTNTSKEMMAFSDFPF--PEDYP--DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND 131 (531)
T ss_dssp T-B-SS-GGGSCCTTS-H--CCCCS--SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT
T ss_pred ceEEeeCchHhcCCCcCC--CCCCC--CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC
Confidence 000011111122222211 11222 246788999999877631 2489999999998765 368888864
Q ss_pred Cc--EEeccEEEEccCCchh
Q 006440 228 GQ--CYAGDLLIGADGIWSK 245 (645)
Q Consensus 228 g~--~i~a~lvVgADG~~S~ 245 (645)
|+ +-.+|.||.|.|.++.
T Consensus 132 g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 132 GKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TEEEEEEECEEEEEE-SSSC
T ss_pred CeEEEEEeCeEEEcCCCcCC
Confidence 32 4568999999999874
No 105
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.56 E-value=9.5e-07 Score=96.42 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=49.9
Q ss_pred EeeCHHHHHHHHHHHcCC--------ceEEcCceEEEEEee-CCeEEEEEcCCcEEeccEEEEccCCchh-hhhhh
Q 006440 185 RVISRMTLQQILAKAVGD--------EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~--------~~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~l 250 (645)
..++...|.+.|.+.+.. ..++.+++|++++.+ ++.+.|++.+| +++||.||.|.|.+|. +.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 467888888888766533 247889999999987 45577888777 6999999999999985 44444
No 106
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.56 E-value=3.3e-07 Score=94.31 Aligned_cols=109 Identities=23% Similarity=0.345 Sum_probs=71.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
+||+|||||++|+++|..|++.|++|+|+|+... .| .+... . .+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg----~~~~~------------~--------------~~~~ 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP----GG----QLTTT------------T--------------EVEN 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC----Cc----ceeec------------c--------------cccc
Confidence 5899999999999999999999999999998641 11 11000 0 0000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHH---cCCceEEcCceEEEEEeeCCeEEEEEcCCcEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 234 (645)
+.. +. ..+....+...+.+. .+.. +++ .+|++++.+++.+.+++.++.++++|
T Consensus 47 ~~~---------~~-------------~~~~~~~~~~~l~~~~~~~gv~-~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d 102 (300)
T TIGR01292 47 YPG---------FP-------------EGISGPELMEKMKEQAVKFGAE-IIY-EEVIKVDLSDRPFKVKTGDGKEYTAK 102 (300)
T ss_pred cCC---------CC-------------CCCChHHHHHHHHHHHHHcCCe-EEE-EEEEEEEecCCeeEEEeCCCCEEEeC
Confidence 000 00 001111233333332 2333 555 78999998888888888888899999
Q ss_pred EEEEccCCch
Q 006440 235 LLIGADGIWS 244 (645)
Q Consensus 235 lvVgADG~~S 244 (645)
.||.|.|...
T Consensus 103 ~liiAtG~~~ 112 (300)
T TIGR01292 103 AVIIATGASA 112 (300)
T ss_pred EEEECCCCCc
Confidence 9999999864
No 107
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.56 E-value=6e-07 Score=98.20 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=48.6
Q ss_pred eEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeC-CeEEEEEc---CC--cEEeccEEEEccCCch-hhhhhh
Q 006440 183 VTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLLIGADGIWS-KVRKNL 250 (645)
Q Consensus 183 ~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~v~~~---~g--~~i~a~lvVgADG~~S-~vR~~l 250 (645)
....|+...+.+.|.+.+. ...++++++|++++.++ +.+.+++. +| .+++|++||.|-|.+| .+++.+
T Consensus 171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 3457899999999988763 23588899999998865 45666543 34 3689999977777665 465555
No 108
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.54 E-value=6.4e-06 Score=88.78 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=98.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChh-HHHHHHHhcc----
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD-VAEEVMRAGC---- 149 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g-~~~~~~~~~~---- 149 (645)
+..+||+|||||+.|+-+|+-++.+|++|+|+|++....- .+.....+-+.+++.|+..... +.+.+.+...
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG---TSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~ 86 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG---TSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRI 86 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc---ccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999999999999865432 2222344667788888776555 3333322211
Q ss_pred ----ccccccc-cccc----------------cCCC-------ceeeec-------cCCCchhhc-CC-CeEEeeCHHHH
Q 006440 150 ----VTGDRIN-GLVD----------------GISG-------SWYIKF-------DTFTPAAEK-GL-PVTRVISRMTL 192 (645)
Q Consensus 150 ----~~~~~~~-~~~~----------------~~~~-------~~~~~~-------~~~~~~~~~-~~-~~~~~i~r~~l 192 (645)
.....+. -+.. ...+ ...+.. +........ +. ...+.++-..|
T Consensus 87 APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRL 166 (532)
T COG0578 87 APHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARL 166 (532)
T ss_pred CccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHH
Confidence 0000000 0000 0000 000000 000000000 00 01234555555
Q ss_pred HHHHHHHc--CCceEEcCceEEEEEeeCCeEEEEEcCC---c--EEeccEEEEccCCchhh-hhhh
Q 006440 193 QQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG---Q--CYAGDLLIGADGIWSKV-RKNL 250 (645)
Q Consensus 193 ~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~--~i~a~lvVgADG~~S~v-R~~l 250 (645)
.-.+...+ ....++..++|+++..+++-+.|...|. + +++|+.||-|.|.++-= ++..
T Consensus 167 v~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 167 VAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 54444433 2224777889999999888555666553 2 59999999999999863 4444
No 109
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.53 E-value=6.2e-07 Score=96.99 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
.+..+||+|||||++|+++|+.|.++|.. ++|+||+... | |.|..-.- ..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~----G---------------------g~W~~~ry----~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV----G---------------------GTWRYNRY----PG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc----C---------------------CcchhccC----Cc
Confidence 34578999999999999999999999999 9999998522 1 11111000 00
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEE--eeCCeEEEEEcCCcE
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFK--DHGDKVSVVLENGQC 230 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~--~~~~~v~v~~~~g~~ 230 (645)
... .+..+...|+.........++. ..--+..+...+.+......+.+++.|..+. ++++.++|+.+++.+
T Consensus 56 l~~------~~p~~~~~~~~~p~~~~~~~~~-~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~ 128 (443)
T COG2072 56 LRL------DSPKWLLGFPFLPFRWDEAFAP-FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT 128 (443)
T ss_pred eEE------CCchheeccCCCccCCcccCCC-cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe
Confidence 000 0011111222111110111110 0112344444444433333455666555544 455689999998865
Q ss_pred --EeccEEEEccCCch
Q 006440 231 --YAGDLLIGADGIWS 244 (645)
Q Consensus 231 --i~a~lvVgADG~~S 244 (645)
+++|.||.|.|..|
T Consensus 129 ~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 129 GELTADFVVVATGHLS 144 (443)
T ss_pred eeEecCEEEEeecCCC
Confidence 55999999999944
No 110
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.53 E-value=6.3e-05 Score=82.32 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhh
Q 006440 192 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 246 (645)
Q Consensus 192 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 246 (645)
|.+.|.+.++...|+++++|++|+.+++++.|++++|+++.+|.||.|--.....
T Consensus 223 l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 223 LIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred HHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 4444555554425889999999999888899999999999999999997765433
No 111
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.50 E-value=2.4e-05 Score=85.90 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCc
Q 006440 195 ILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 243 (645)
Q Consensus 195 ~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~ 243 (645)
.|.+.++...++++++|+.|+.++++++|++++|+++.||.||.|--..
T Consensus 230 ~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 230 EIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 3334443234888999999999888999998888889999999987765
No 112
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.48 E-value=9e-06 Score=89.30 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
.|.+.|.+.+....|+++++|++|+.+++++.|++.+|+++.||.||.|-- ...+.+.+
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 344555555543348899999999999899999888888899999999884 33344443
No 113
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.47 E-value=2.2e-06 Score=94.08 Aligned_cols=148 Identities=19% Similarity=0.292 Sum_probs=84.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCC--cccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
+||+|||||++|+.+|..+++.|.+|+|+|+........+. ..+++ -.....+-++.+| |....+.+..... .++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaLG-G~~~~~~d~~~i~-~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDALG-GLMGKAADKAGLQ-FRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccccc-ccchhhhhhhccc-chHHHHHHhhcee-hee
Confidence 69999999999999999999999999999986422100000 00011 0001123344443 2222222221100 000
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC---CceEEcCceEEEEEee-CC-eEEEEEcCCcE
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GD-KVSVVLENGQC 230 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~ 230 (645)
.....+. .. ..+ ...+++..+.+.|.+.+. ...++ ..+++++..+ ++ ...|.+.+|..
T Consensus 78 ---ln~skgp----------AV--~~~-RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~ 140 (617)
T TIGR00136 78 ---LNSSKGP----------AV--RAT-RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLK 140 (617)
T ss_pred ---cccCCCC----------cc--ccc-HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCE
Confidence 0000000 00 001 136788888888877653 33344 4578887654 33 35578888889
Q ss_pred EeccEEEEccCCchh
Q 006440 231 YAGDLLIGADGIWSK 245 (645)
Q Consensus 231 i~a~lvVgADG~~S~ 245 (645)
+.|+.||.|.|.++.
T Consensus 141 I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 141 FRAKAVIITTGTFLR 155 (617)
T ss_pred EECCEEEEccCcccC
Confidence 999999999999963
No 114
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.47 E-value=7.2e-08 Score=92.75 Aligned_cols=107 Identities=28% Similarity=0.484 Sum_probs=80.2
Q ss_pred hhccchhhhHhcCCcEEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCC-CCCCcceeeeCCCcccccceEEEEE--CCE
Q 006440 515 WFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESH-EDFSRTSIVIPSAQVSKMHARISYK--DGA 591 (645)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~-~~~~~~~~~~~~~~vSr~Ha~i~~~--~~~ 591 (645)
|..+.++.++. .+..+.+..++..- +..- -++++.+++||... ||+ +|++.++||.||.+.+. ...
T Consensus 5 ~~~p~wA~kpp-~g~hldv~k~d~li--~kl~---iddkr~y~Fgrn~q~~df-----~idh~scSrvhaa~vyhkhl~~ 73 (337)
T KOG1880|consen 5 FDPPSWAGKPP-AGLHLDVVKGDKLI--QKLI---IDDKRRYLFGRNHQTCDF-----VIDHASCSRVHAALVYHKHLSR 73 (337)
T ss_pred CCCCCcccCCC-CCCceeeeecchhH--HHHH---hhhhhhhhhccCCCccce-----EeecchhhhhHhhhhhhhccce
Confidence 44444444443 34455555443321 1111 22455899999987 666 99999999999999886 566
Q ss_pred EEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEECCCceE
Q 006440 592 FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKV 637 (645)
Q Consensus 592 ~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~ 637 (645)
++|.|++|++|||+... ||.+..++++..|..++||-....
T Consensus 74 ~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~~~~fgasTr~ 114 (337)
T KOG1880|consen 74 IFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGSTFHFGASTRI 114 (337)
T ss_pred EEEEEccCCcceeeeee-----eeccCCCccccCCceEEEecccee
Confidence 99999999999999888 999999999999999999977544
No 115
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.47 E-value=3.4e-06 Score=94.01 Aligned_cols=37 Identities=41% Similarity=0.592 Sum_probs=33.8
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..++||+|||+|+||+++|+.+++.|.+|+|+||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 3468999999999999999999999999999999754
No 116
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.46 E-value=1.3e-06 Score=96.87 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=75.2
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
...+||+||||||+|+++|..|++.|++|+|+++. .|. .. .. .. ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~------~GG---~~-~~--------~~--~~-------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER------FGG---QV-LD--------TM--GI-------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CCC---ee-ec--------cC--cc--------------
Confidence 34689999999999999999999999999999753 110 00 00 00 00
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
..+. .+. .....++.+.|.+.+. ...++.+++|+++...++.+.|++.+|++++
T Consensus 255 -~~~~---------~~~--------------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~ 310 (517)
T PRK15317 255 -ENFI---------SVP--------------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLK 310 (517)
T ss_pred -cccC---------CCC--------------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 0000 000 0112234444444331 1347778999999988788888888888999
Q ss_pred ccEEEEccCCch
Q 006440 233 GDLLIGADGIWS 244 (645)
Q Consensus 233 a~lvVgADG~~S 244 (645)
++.||.|+|.++
T Consensus 311 a~~vViAtG~~~ 322 (517)
T PRK15317 311 AKTVILATGARW 322 (517)
T ss_pred cCEEEECCCCCc
Confidence 999999999965
No 117
>PLN02661 Putative thiazole synthesis
Probab=98.43 E-value=4.8e-06 Score=85.50 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~ 111 (645)
..++||+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 3468999999999999999999986 999999998653
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.43 E-value=1.8e-06 Score=95.69 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=73.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
...+||+||||||+|+++|..|++.|++|+|+|... .|. . .. .. ++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-----GG~----~-~~--------~~--~~-------------- 255 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-----GGQ----V-KD--------TV--GI-------------- 255 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CCc----c-cc--------Cc--Cc--------------
Confidence 446899999999999999999999999999997421 111 0 00 00 00
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEe
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~ 232 (645)
..+.. .. .....++...|.+.+. ...++.+++|+++..+++.+.+++++|+.+.
T Consensus 256 -~~~~~---------~~--------------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~ 311 (515)
T TIGR03140 256 -ENLIS---------VP--------------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLK 311 (515)
T ss_pred -ccccc---------cC--------------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 00000 00 0011223333333221 2337778999999887778888888888999
Q ss_pred ccEEEEccCCch
Q 006440 233 GDLLIGADGIWS 244 (645)
Q Consensus 233 a~lvVgADG~~S 244 (645)
+|.||.|+|.+.
T Consensus 312 ~d~lIlAtGa~~ 323 (515)
T TIGR03140 312 AKSVIVATGARW 323 (515)
T ss_pred eCEEEECCCCCc
Confidence 999999999863
No 119
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.42 E-value=9.8e-06 Score=89.66 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||||||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 468999999999999999999999999999999754
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.40 E-value=7.3e-06 Score=90.37 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcC---CceEEcCceEEEEEeeCCeEE-EEEcC-C--cEEeccEEEEccCCchhhhh
Q 006440 190 MTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLIGADGIWSKVRK 248 (645)
Q Consensus 190 ~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~~-g--~~i~a~lvVgADG~~S~vR~ 248 (645)
..+.+.|.+.+. ...++.++.++++..+++.+. +...+ + ..++++.||.|+|..|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 457777777653 345888999999987665544 44332 3 36899999999999998654
No 121
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.40 E-value=1.6e-06 Score=91.20 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=68.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccC---CCCcc-cceeeCchHHHHHHhcChhHHH-HHHHhccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYR-GPIQIQSNALAALEAIDLDVAE-EVMRAGCVTG 152 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~---~g~~~-~~~~l~~~~~~~l~~l~~g~~~-~~~~~~~~~~ 152 (645)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... ..... .....+..+...+..+ |+|. ++...+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~--Gll~~em~~lgsl-- 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV--GLLKEEMRRLGSL-- 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC--CchHHHHHHhcch--
Confidence 58999999999999999999999999999987543211 11000 1233445555667777 6665 33222110
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCe--EEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEE
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPV--TRVISRMTLQQILAKAVGD---EIILNESNVIDFK 215 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~ 215 (645)
.+ .. ....+.|. ...++|..+.+.|.+.+.. ..++ ..+|+++.
T Consensus 79 -~~---~a---------------ad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 79 -IM---EA---------------ADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -he---ec---------------ccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 00 00 00111121 1468899899999888643 2344 55777774
No 122
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.39 E-value=3.8e-06 Score=91.57 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=31.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~ 111 (645)
||||||+|++|+++|+.++++| .+|+|+||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 7999999999999999999999 99999999754
No 123
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.38 E-value=3.6e-06 Score=83.58 Aligned_cols=168 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHH------HHHHhcChhHHHHHHHh
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNAL------AALEAIDLDVAEEVMRA 147 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~------~~l~~l~~g~~~~~~~~ 147 (645)
+.+..||+|||||+-|+++|+.|+++|.++.++|+.+.+.......+..-.+.+.=. -.++.+ ..|.++...
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~--e~W~~~~~~ 81 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAY--EKWRNLPEE 81 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHH--HHHHhChhh
Confidence 345689999999999999999999999999999997654322211111111111100 011222 222222111
Q ss_pred ccc-cccccccccccC------------------------CCceeeeccC-CC-chhhcCC--CeEEeeCHHHHHHHHHH
Q 006440 148 GCV-TGDRINGLVDGI------------------------SGSWYIKFDT-FT-PAAEKGL--PVTRVISRMTLQQILAK 198 (645)
Q Consensus 148 ~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~-~~-~~~~~~~--~~~~~i~r~~l~~~L~~ 198 (645)
... .......+..+. +.+....|+. .. +....|+ +.+-++.-..-.++|..
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~ 161 (399)
T KOG2820|consen 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQD 161 (399)
T ss_pred hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHH
Confidence 000 000000000000 0000011110 00 0111121 23446666666666666
Q ss_pred HcCC--ceEEcCceEEEEE---eeCCeEEEEEcCCcEEeccEEEEccCCc
Q 006440 199 AVGD--EIILNESNVIDFK---DHGDKVSVVLENGQCYAGDLLIGADGIW 243 (645)
Q Consensus 199 ~~~~--~~i~~~~~v~~i~---~~~~~v~v~~~~g~~i~a~lvVgADG~~ 243 (645)
.+.. ..++.+.+|+.++ +++..+.|.+.+|..+.|+-+|-+-|++
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 5422 2477888888776 3556788999999999999999999996
No 124
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.37 E-value=4.3e-06 Score=93.91 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHHc---CCceEEcCceEEEEEeeCCeEE----EEEcCCc--EEeccEEEEccCCchhhh
Q 006440 191 TLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKVR 247 (645)
Q Consensus 191 ~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~i~a~lvVgADG~~S~vR 247 (645)
.|...|.+.+ ....++.++.++++..+++.+. +...+|+ .+.|+.||.|+|..|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4666666654 2335778999999887666553 2345663 689999999999999764
No 125
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.36 E-value=6.6e-06 Score=90.39 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=33.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 468999999999999999999999999999999753
No 126
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-06 Score=86.55 Aligned_cols=112 Identities=27% Similarity=0.434 Sum_probs=69.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~ 154 (645)
..+||+|||||||||++|+.++++|++ ++|+|+.... |+ + ..+. .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g----g~-----------------~--~~~~-----------~ 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG----GQ-----------------L--TKTT-----------D 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC----Cc-----------------c--ccce-----------e
Confidence 468999999999999999999999999 6677664211 10 0 0000 0
Q ss_pred cccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHc---CCceEEcCceEEEEEeeCCeEEEEEcCCcEE
Q 006440 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (645)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i 231 (645)
+..+ + +.+ ..+.=.+|.+.+.+.+ +.. +.. .+|.+++..++...|++.+++ +
T Consensus 48 veny------------p--------g~~--~~~~g~~L~~~~~~~a~~~~~~-~~~-~~v~~v~~~~~~F~v~t~~~~-~ 102 (305)
T COG0492 48 VENY------------P--------GFP--GGILGPELMEQMKEQAEKFGVE-IVE-DEVEKVELEGGPFKVKTDKGT-Y 102 (305)
T ss_pred ecCC------------C--------CCc--cCCchHHHHHHHHHHHhhcCeE-EEE-EEEEEEeecCceEEEEECCCe-E
Confidence 0000 0 000 0112234555555544 222 332 677777766667788888887 9
Q ss_pred eccEEEEccCCchhh
Q 006440 232 AGDLLIGADGIWSKV 246 (645)
Q Consensus 232 ~a~lvVgADG~~S~v 246 (645)
+|+.||.|.|....-
T Consensus 103 ~ak~vIiAtG~~~~~ 117 (305)
T COG0492 103 EAKAVIIATGAGARK 117 (305)
T ss_pred EEeEEEECcCCcccC
Confidence 999999999997643
No 127
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.30 E-value=1.5e-05 Score=89.46 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
.+||+|||+|+||+++|+.+++. |.+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 57999999999999999999987 689999999753
No 128
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.28 E-value=2.3e-06 Score=96.21 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=31.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
||+|||+|+||+++|+.+++.|.+|+|+||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 799999999999999999999999999999753
No 129
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.26 E-value=1.6e-05 Score=89.52 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g---~~~~~~~~~~~ 111 (645)
.++||+|||+|+||+++|+.+++.| .+|+|+||...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 4579999999999999999999998 89999999754
No 130
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.26 E-value=3.6e-06 Score=94.14 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=32.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+||+||||||||+++|+.|+++|++|+|+|+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3589999999999999999999999999999985
No 131
>PRK07121 hypothetical protein; Validated
Probab=98.25 E-value=2.7e-05 Score=86.13 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=33.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||||||+|.+|+++|+.+++.|.+|+|+||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 468999999999999999999999999999999754
No 132
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.2e-05 Score=88.10 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=31.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+||+|||+|+||+++|+.+++.|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999974
No 133
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.23 E-value=1.7e-05 Score=73.10 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=43.4
Q ss_pred eeCHHHHHHHHHHHc-------CC--ceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCC
Q 006440 186 VISRMTLQQILAKAV-------GD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (645)
Q Consensus 186 ~i~r~~l~~~L~~~~-------~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~ 242 (645)
.+.|..+-++|.+.+ .. .+.+...+|+++...++++.+.+.+|..+.+|.||.|.|.
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 456766666664432 22 2344467999999999999999999999999999999995
No 134
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2.8e-06 Score=95.37 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=32.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
..+||+|||||+||+++|+.+++. |.+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 457999999999999999999987 489999999753
No 135
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.20 E-value=2.5e-05 Score=84.58 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+|.||+++|+.++ .|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 4589999999999999999975 7999999999754
No 136
>PLN02568 polyamine oxidase
Probab=98.19 E-value=4e-05 Score=84.93 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCC
Q 006440 190 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (645)
Q Consensus 190 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~ 242 (645)
..|.+.|.+.++...|+++++|+.|+.+++++.|++.+|++++||.||.+--.
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 34778888887655688999999999999999999999989999999988654
No 137
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.17 E-value=3.6e-05 Score=62.11 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|+|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 489999999999999999999999999998753
No 138
>PRK09897 hypothetical protein; Provisional
Probab=98.16 E-value=1.5e-05 Score=87.60 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=34.1
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcC-CcEEeccEEEEccCCc
Q 006440 204 IILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLIGADGIW 243 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~-g~~i~a~lvVgADG~~ 243 (645)
.++.+++|++++.+++++.|++.+ +..+.+|.||.|+|..
T Consensus 125 ~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 125 AVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 466788999999988899998865 4689999999999963
No 139
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.15 E-value=2.8e-06 Score=66.07 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=27.4
Q ss_pred EEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 82 VAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 82 i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999753
No 140
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.12 E-value=1.2e-05 Score=87.53 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+.+||+||||||+|+.+|+.|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46899999999999999999999999999999864
No 141
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.12 E-value=3.3e-05 Score=83.60 Aligned_cols=33 Identities=39% Similarity=0.657 Sum_probs=29.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
||||||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 899999999999999999999999999999865
No 142
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=5.9e-05 Score=85.57 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=32.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||+|||+|.|||++|+.+++.|.+|+|+|+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46899999999999999999999999999999854
No 143
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.10 E-value=2.2e-05 Score=81.89 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=33.5
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
....||||||+|.+||++|+.|.+.||+|+|+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 4567999999999999999999999999999997653
No 144
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.10 E-value=4.4e-05 Score=84.49 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
++||+|||+|.||+++|+.+++ |.+|+|+||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 5799999999999999999976 999999999754
No 145
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=2.1e-05 Score=86.47 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..|||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999985
No 146
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.09 E-value=7.2e-05 Score=84.48 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
..+||+|||+|+||+++|+.+++. |.+|+|+||...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 357999999999999999999998 999999999754
No 147
>PRK10262 thioredoxin reductase; Provisional
Probab=98.07 E-value=2.2e-05 Score=81.76 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
...+||+||||||+|+++|..|+++|++++++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45689999999999999999999999999999954
No 148
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=2.3e-05 Score=86.03 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|||+||||||+|+.+|..|+++|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46999999999999999999999999999999853
No 149
>PRK14694 putative mercuric reductase; Provisional
Probab=98.06 E-value=7.9e-05 Score=81.83 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
...++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 446799999999999999999999999999999985
No 150
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.03 E-value=7.6e-05 Score=81.91 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+..+||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 456999999999999999999999999999999853
No 151
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.02 E-value=3.5e-05 Score=81.79 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+|+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999998653
No 152
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=0.00017 Score=80.92 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=32.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||+|||+|.||+++|+.+++.|.+|+|+||..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 45799999999999999999999999999999974
No 153
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=0.00018 Score=81.02 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=33.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+||+|||+|.||+++|+.+++.|.+|+|+||..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 346899999999999999999999999999999964
No 154
>PLN02507 glutathione reductase
Probab=97.99 E-value=5.5e-05 Score=83.51 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+|||+||||||+|+.+|..++++|.+|+|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 44689999999999999999999999999999973
No 155
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00015 Score=78.32 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=55.8
Q ss_pred EEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCC-eEEEEEcCCcEEeccEEEEccCCchhhhhhhcCCCCCcccC
Q 006440 184 TRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG 260 (645)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v~v~~~~g~~i~a~lvVgADG~~S~vR~~l~~~~~~~~~~ 260 (645)
...++...+.++|...+.. ..|..++.|++|....+ .+.|++..| .|++..+|.|.|.+..--..+.+...+-+.-
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~ 259 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPM 259 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceee
Confidence 3478888999999876532 24778999999976544 456777777 5999999999999985444454444444443
Q ss_pred eEEEE
Q 006440 261 YTCYT 265 (645)
Q Consensus 261 ~~~~~ 265 (645)
..+|.
T Consensus 260 ~H~Yv 264 (856)
T KOG2844|consen 260 HHAYV 264 (856)
T ss_pred eeeEE
Confidence 34443
No 156
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=1.6e-05 Score=89.92 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=32.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||+|||+|+||+++|+.+++.|.+|+|+||..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 45899999999999999999999999999999975
No 157
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.97 E-value=5.8e-05 Score=80.43 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 192 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 192 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
|.+.|.+.+... ++.+++|+.|..+..++.+.+.+|..+.+|-||-+- ....+-+.+
T Consensus 217 l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~-p~~~l~~ll 273 (444)
T COG1232 217 LIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTA-PLPELARLL 273 (444)
T ss_pred HHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcC-CHHHHHHHc
Confidence 444555555555 888999999999988888999999999999998653 333444444
No 158
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.97 E-value=1.3e-05 Score=77.17 Aligned_cols=32 Identities=41% Similarity=0.653 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
||+||||||+|+.+|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 159
>PLN02529 lysine-specific histone demethylase 1
Probab=97.97 E-value=5.3e-06 Score=93.97 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=52.0
Q ss_pred ccccccccccCcccccccccCCccccccccccccCCCCCCCCCCCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 31 CIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..++++|+. .|.......+...|. +|+.... +.++.....+|+|||||++|+++|..|+++|++|+|+|++.
T Consensus 122 ~~~i~~ci~--~c~~~l~~~~~inc~--vnp~~~~----~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 122 SSEYEHLIS--AAYDFLLYNGYINFG--VSPSFAS----PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred hhhHHHHHH--HHHHHHHhCCCccee--ecccccC----CCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 467899988 333233333445666 7765543 12223456799999999999999999999999999999864
No 160
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00013 Score=82.08 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+.||+|||+|+||+++|+.+++.|.+|+|+||...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 456999999999999999999999999999998753
No 161
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.96 E-value=0.00022 Score=80.67 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=33.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 368999999999999999999999999999999754
No 162
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.95 E-value=0.0001 Score=81.11 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=31.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEec
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (645)
..+||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 163
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.94 E-value=0.00012 Score=82.34 Aligned_cols=36 Identities=39% Similarity=0.668 Sum_probs=33.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+|++|+++|+.++++|.+|+|+||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 468999999999999999999999999999999753
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=0.00012 Score=80.35 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=32.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999863
No 165
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.90 E-value=0.00022 Score=80.76 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999999753
No 166
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=0.00028 Score=79.64 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||+|||+|+||+++|+.+++.|.+|+|+||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35899999999999999999999999999999974
No 167
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.89 E-value=0.00017 Score=80.33 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|+||+++|+.+++. .+|+|+||...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 458999999999999999999987 89999999753
No 168
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.87 E-value=7.8e-05 Score=73.37 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=94.0
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCccc-----cCCCCcccceeeCchHHHHH-HhcChhHHHHH
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAI-----RGEGQYRGPIQIQSNALAAL-EAIDLDVAEEV 144 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~-----~~~g~~~~~~~l~~~~~~~l-~~l~~g~~~~~ 144 (645)
.....+|++|||||++|++.|..|.-+ +.+|.|+|+..... ..+|-.+.++...|+++++- ---|..+.-+.
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~y 123 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEY 123 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHH
Confidence 345679999999999999999999887 99999999975332 22233334566777776541 11111222222
Q ss_pred HHhcccccccccc--------------------ccccCCCceeee-ccC--CCch----hhcCCCeEEeeCHHHHHHHHH
Q 006440 145 MRAGCVTGDRING--------------------LVDGISGSWYIK-FDT--FTPA----AEKGLPVTRVISRMTLQQILA 197 (645)
Q Consensus 145 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~-~~~--~~~~----~~~~~~~~~~i~r~~l~~~L~ 197 (645)
.+...++..+.-. ..++..+-..+. ++. ..+. ...-.|..-+++...+...+.
T Consensus 124 c~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 124 CDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred hhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 2211111000000 000000000000 000 0000 000112233566655555554
Q ss_pred HHc---CCceEEcCceEEEEEeeCCe-----EEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 198 KAV---GDEIILNESNVIDFKDHGDK-----VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 198 ~~~---~~~~i~~~~~v~~i~~~~~~-----v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
+.. +. .+..+-++..+.++.+. ++|.-..+++++.+++|.|.|..|---..+
T Consensus 204 edF~~~gg-~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 204 EDFDFMGG-RIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHHhcc-cccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 432 22 25667788888776553 344444568999999999999988765554
No 169
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=5.9e-05 Score=83.87 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
...+|||+||||||+|.++|..+++.|.+|+|+|+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 345789999999999999999999999999999985
No 170
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.84 E-value=0.00047 Score=77.23 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=33.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.++||+|||+|.+||++|+.+++.|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999976
No 171
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.84 E-value=0.00036 Score=78.62 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=33.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..++||+|||+|++|+++|+.++++|.+|+|+|+.+
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 446899999999999999999999999999999974
No 172
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=0.00027 Score=79.03 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||+|||+|.||+++|+.+ +.|.+|+|+||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 457999999999999999999 9999999999974
No 173
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.83 E-value=1.7e-05 Score=87.30 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=33.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||||||||+.||++|..|+++|++|+|+||+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 458999999999999999999999999999998653
No 174
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.83 E-value=7.1e-05 Score=84.26 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|+||+++|+.+++. .+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 457999999999999999999987 99999999753
No 175
>PLN02815 L-aspartate oxidase
Probab=97.83 E-value=0.00029 Score=78.99 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=32.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+||+|||+|.|||++|+.+++.| +|+|+||...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 44689999999999999999999999 9999999753
No 176
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.82 E-value=0.00029 Score=73.95 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=47.9
Q ss_pred EEeeCHHHHHHHHHHHcCC---ceEEcCceEEEEEeeCCe-EEEEEcC---C--cEEeccEEEEccCCchh
Q 006440 184 TRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSK 245 (645)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~-v~v~~~~---g--~~i~a~lvVgADG~~S~ 245 (645)
+.-|+-..|.+.|.+.+.. ..++++++|++|++.+++ |.|+..| | .+++|++|+..-|.+|-
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 4457778888888877632 368999999999998777 8888743 2 57999999877777764
No 177
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=0.00035 Score=78.67 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=32.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
++||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999743
No 178
>PRK08275 putative oxidoreductase; Provisional
Probab=97.79 E-value=0.00039 Score=77.91 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=32.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
..+||+|||+|.||+++|+.+++. |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 457999999999999999999987 789999999754
No 179
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.79 E-value=0.00014 Score=78.05 Aligned_cols=34 Identities=26% Similarity=0.592 Sum_probs=30.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
..+|+|||||+||+.+|..|+++|+ +|+|+++.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 4589999999999999999999987 799999864
No 180
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.76 E-value=0.00034 Score=79.64 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|.||+.+|+.+++.|.+|+|+|+.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 468999999999999999999999999999998754
No 181
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.75 E-value=0.00017 Score=70.34 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=85.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeccCccccCCCCccccee--eCchHHHHHHhcChhHHHHHHHh
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKG------FEVLVFEKDMSAIRGEGQYRGPIQ--IQSNALAALEAIDLDVAEEVMRA 147 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g------~~~~~~~~~~~~~~~~g~~~~~~~--l~~~~~~~l~~l~~g~~~~~~~~ 147 (645)
...+|+|||||+.|.++|+.|++++ +.++|+|...-....+|...+-+. -.+.-..-|..|...+.+++.+.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3478999999999999999999998 899999987543333332211111 11211222333332344444332
Q ss_pred ccccccccccccccCCCceeeecc--CCCch-----------------hhcCC-CeEEeeCHHHHHHHHHHHcCC---ce
Q 006440 148 GCVTGDRINGLVDGISGSWYIKFD--TFTPA-----------------AEKGL-PVTRVISRMTLQQILAKAVGD---EI 204 (645)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------------~~~~~-~~~~~i~r~~l~~~L~~~~~~---~~ 204 (645)
. .+..-|.+..-. .+.+..+ ...+. ...|. .-..+|+...|.+.++..+.+ ..
T Consensus 89 y--dGvnnwgYRalt--Tws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~ 164 (380)
T KOG2852|consen 89 Y--DGVNNWGYRALT--TWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVK 164 (380)
T ss_pred h--cCcccccceeee--EEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeE
Confidence 1 111111111000 0111111 00000 00111 113578899999999887632 33
Q ss_pred EEcCceEEEEEeeCCeEE-EEEc---C-CcEEeccEEEEccCCchh
Q 006440 205 ILNESNVIDFKDHGDKVS-VVLE---N-GQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 205 i~~~~~v~~i~~~~~~v~-v~~~---~-g~~i~a~lvVgADG~~S~ 245 (645)
+.++ +|.++..+.+++. +-.+ + ......+.+|.+-|.++.
T Consensus 165 lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 165 LVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 4444 5667753333322 2222 2 245678899999999875
No 182
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.75 E-value=0.00022 Score=79.53 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=31.8
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+||+|||+|.||+++|+.++ .|.+|+|+||.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 34689999999999999999996 4999999999753
No 183
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.75 E-value=0.00018 Score=76.70 Aligned_cols=99 Identities=25% Similarity=0.406 Sum_probs=71.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|+++|.+|+++++.+..... .++..+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-------------------~~~~~~----------------- 185 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-------------------LMPPEV----------------- 185 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-------------------hCCHHH-----------------
Confidence 57999999999999999999999999999986321000 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.|.+ .+ ..++.++++++++.+++.+.+++.+|+++.+|+||
T Consensus 186 -------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI 232 (377)
T PRK04965 186 -------------------------------SSRLQHRLTE-MG-VHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI 232 (377)
T ss_pred -------------------------------HHHHHHHHHh-CC-CEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence 0123333322 23 33677889999988777788889999999999999
Q ss_pred EccCCchh
Q 006440 238 GADGIWSK 245 (645)
Q Consensus 238 gADG~~S~ 245 (645)
.|.|..+.
T Consensus 233 ~a~G~~p~ 240 (377)
T PRK04965 233 AAAGLRPN 240 (377)
T ss_pred ECcCCCcc
Confidence 99998653
No 184
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.72 E-value=0.00081 Score=76.05 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=31.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+|||+||+|..+|..++++|.+|+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999974
No 185
>PLN02546 glutathione reductase
Probab=97.71 E-value=0.00021 Score=79.52 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEec
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (645)
..+|||+|||+||+|+.+|..++++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4469999999999999999999999999999996
No 186
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.69 E-value=0.00022 Score=78.36 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+|||+||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 187
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.00015 Score=77.05 Aligned_cols=145 Identities=19% Similarity=0.307 Sum_probs=83.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccc----c--CCCCcccceeeCchHHHHHHhcChhHHHHHHHhcc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI----R--GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~----~--~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~ 149 (645)
..+||+|||||-||+.+|++.+|.|.++.++--+.... + ..|....++ ..+-++.|| |+.....+...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~-----lvrEIDALG-G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGH-----LVREIDALG-GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccce-----eEEeehhcc-chHHHhhhhcC
Confidence 35999999999999999999999999999997654321 1 111111111 123355665 55555444432
Q ss_pred ccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCCe--EEEEE
Q 006440 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK--VSVVL 225 (645)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~ 225 (645)
... ++ .+...|..+. + + -..+++....+.+.+.+.+ ..-.+...|+++..+++. +.|.+
T Consensus 77 IQ~-r~---LN~sKGPAVr-----------a-~-RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t 139 (621)
T COG0445 77 IQF-RM---LNSSKGPAVR-----------A-P-RAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVT 139 (621)
T ss_pred Cch-hh---ccCCCcchhc-----------c-h-hhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEe
Confidence 211 11 1111111000 0 0 1134455555555544422 222345677787765443 56888
Q ss_pred cCCcEEeccEEEEccCCc
Q 006440 226 ENGQCYAGDLLIGADGIW 243 (645)
Q Consensus 226 ~~g~~i~a~lvVgADG~~ 243 (645)
.+|..+.|+.||.+.|..
T Consensus 140 ~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 140 ADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCCeeecCEEEEeeccc
Confidence 999999999999999974
No 188
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.66 E-value=6e-05 Score=74.75 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=41.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAID 137 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~ 137 (645)
++||+|||||+||++||+.|+++|.++.|+-+... ++..+..++.+|.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs----------ALhfsSGslDlL~~lP 52 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS----------ALHFSSGSLDLLGRLP 52 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh----------hhhcccccHHHhhcCC
Confidence 68999999999999999999999999999987643 3445556666666664
No 189
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.66 E-value=4.8e-05 Score=82.89 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+++||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 46899999999999999999999999999999874
No 190
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.66 E-value=0.00022 Score=76.80 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.5
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+..||++|||+||+|..+|..+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999999999999974
No 191
>PRK06370 mercuric reductase; Validated
Probab=97.64 E-value=5.5e-05 Score=83.01 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=33.4
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
++.++||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 345699999999999999999999999999999985
No 192
>PRK06116 glutathione reductase; Validated
Probab=97.62 E-value=5.8e-05 Score=82.53 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=32.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.++||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3689999999999999999999999999999985
No 193
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=6e-05 Score=82.20 Aligned_cols=38 Identities=37% Similarity=0.580 Sum_probs=34.3
Q ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
......+|||||||++|++||..|.+.|++|+|+|.+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 34556799999999999999999999999999999865
No 194
>PRK12839 hypothetical protein; Provisional
Probab=97.62 E-value=0.003 Score=70.93 Aligned_cols=38 Identities=39% Similarity=0.551 Sum_probs=34.2
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...++||+|||+|++|+++|+.+++.|.+|+|+|+...
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34578999999999999999999999999999999743
No 195
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.61 E-value=0.008 Score=64.17 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=51.9
Q ss_pred EEeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 184 TRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
...++...+...|.+.+.. ..++.+++|++++.+++.+.|++.+|..++||.||.|.|.++.
T Consensus 129 ~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 3467888888888887643 3578899999999888888898888888999999999999985
No 196
>PRK07208 hypothetical protein; Provisional
Probab=97.61 E-value=6.3e-05 Score=83.01 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=33.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
++..||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 456799999999999999999999999999999865
No 197
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.61 E-value=0.00067 Score=74.43 Aligned_cols=33 Identities=45% Similarity=0.673 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|+|||+||+|+.+|..++++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 379999999999999999999999999999863
No 198
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.59 E-value=0.00013 Score=80.88 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=30.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+.||+|||+|.||+++|+.++ |.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 579999999764
No 199
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.59 E-value=0.00032 Score=76.35 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~ 110 (645)
+|+|||||++|+.+|..|++. +++|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999987 68999999975
No 200
>PRK14727 putative mercuric reductase; Provisional
Probab=97.58 E-value=0.00051 Score=75.62 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=32.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4689999999999999999999999999999986
No 201
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=0.002 Score=72.57 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=32.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.++||+|||+|++|+++|+.++++|.+|+|+|+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36799999999999999999999999999999864
No 202
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.58 E-value=0.00081 Score=75.92 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.7
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
|+|||+|+|||++|+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999975
No 203
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.58 E-value=0.00055 Score=75.14 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=72.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.... .++..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~---------------- 218 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------FLDDEI---------------- 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------cCCHHH----------------
Confidence 46899999999999999999999999999998642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
...+.+.|.+ .+ ..++.++++++++.+++++.+++.+|+++++|.|
T Consensus 219 --------------------------------~~~l~~~l~~-~g-I~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 264 (461)
T PRK05249 219 --------------------------------SDALSYHLRD-SG-VTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264 (461)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEE
Confidence 0122333322 12 3477789999998777778888888889999999
Q ss_pred EEccCCchhhh
Q 006440 237 IGADGIWSKVR 247 (645)
Q Consensus 237 VgADG~~S~vR 247 (645)
|.|.|......
T Consensus 265 i~a~G~~p~~~ 275 (461)
T PRK05249 265 LYANGRTGNTD 275 (461)
T ss_pred EEeecCCcccc
Confidence 99999876543
No 204
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.57 E-value=0.00055 Score=73.53 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=68.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||+|++|+.+|..|++.|.+|+|+|+.+..... .++..+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------~~~~~~----------------- 188 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------NAPPPV----------------- 188 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------hcCHHH-----------------
Confidence 57999999999999999999999999999986421000 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.+.+ .+ ..++.++++++++. ++.+.+++.+|+++.+|+||
T Consensus 189 -------------------------------~~~l~~~l~~-~G-V~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv 234 (396)
T PRK09754 189 -------------------------------QRYLLQRHQQ-AG-VRILLNNAIEHVVD-GEKVELTLQSGETLQADVVI 234 (396)
T ss_pred -------------------------------HHHHHHHHHH-CC-CEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEE
Confidence 0012222222 23 33777889998876 55677888899999999999
Q ss_pred EccCCchh
Q 006440 238 GADGIWSK 245 (645)
Q Consensus 238 gADG~~S~ 245 (645)
.|.|....
T Consensus 235 ~a~G~~pn 242 (396)
T PRK09754 235 YGIGISAN 242 (396)
T ss_pred ECCCCChh
Confidence 99998654
No 205
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.57 E-value=0.00059 Score=73.93 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=31.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+.+.+|+|||||.+|+.+|..|.+.+++|+|||+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 445789999999999999999988789999999864
No 206
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.57 E-value=0.0019 Score=72.31 Aligned_cols=37 Identities=38% Similarity=0.611 Sum_probs=33.3
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...++||||||+| +|+++|+.+++.|.+|+|+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457999999999 899999999999999999999753
No 207
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.57 E-value=0.00075 Score=72.70 Aligned_cols=103 Identities=27% Similarity=0.337 Sum_probs=76.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~ 155 (645)
.+..++|||||+.|+.+|..+++.|.+|+|+|+.+...+ ..+..+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------~~D~ei--------------- 216 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------GEDPEI--------------- 216 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------cCCHHH---------------
Confidence 346799999999999999999999999999998753211 111011
Q ss_pred ccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCc--EEec
Q 006440 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ--CYAG 233 (645)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~--~i~a 233 (645)
...+.+.|.+ +...++.+++++.++..++++.+++++|+ ++++
T Consensus 217 ---------------------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~a 261 (454)
T COG1249 217 ---------------------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEA 261 (454)
T ss_pred ---------------------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEe
Confidence 1123344444 33347889999999988877889998886 7999
Q ss_pred cEEEEccCCchhhhh
Q 006440 234 DLLIGADGIWSKVRK 248 (645)
Q Consensus 234 ~lvVgADG~~S~vR~ 248 (645)
|.|+.|-|+...+-.
T Consensus 262 d~vLvAiGR~Pn~~~ 276 (454)
T COG1249 262 DAVLVAIGRKPNTDG 276 (454)
T ss_pred eEEEEccCCccCCCC
Confidence 999999999766654
No 208
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.56 E-value=7e-05 Score=81.69 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=31.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999985
No 209
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.55 E-value=0.00023 Score=77.70 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=29.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC--CeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (645)
+|+|||||++|+++|..|++.| .+|+|+|+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999975 5899999875
No 210
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.54 E-value=0.00097 Score=70.35 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (645)
||+|||+|+|||++|+.|++. ++|+|+-|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999997644
No 211
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.54 E-value=0.0057 Score=63.93 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=48.4
Q ss_pred EEeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEE-EEEcCCcEEeccEEEEccCCchhh
Q 006440 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 246 (645)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~v 246 (645)
...++-..|...|.+.+. ...++.+++|++++.+++.+. |...+| +++||.||.|.|+++.-
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 346788888888887653 235888999999998777664 565566 79999999999998863
No 212
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=0.00089 Score=73.36 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|+||||||+|+++|..|++.|.+|+|+|+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999863
No 213
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.00013 Score=74.50 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=64.3
Q ss_pred CCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCcccccceEEEEE---------------CCEEEEEECCCCcceeecC
Q 006440 543 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTD 607 (645)
Q Consensus 543 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~---------------~~~~~i~D~~S~nGt~vn~ 607 (645)
..+.+. .+ .+++||.+.|+. .+....+|..|-.|... ...+++.|. |+||||||.
T Consensus 57 ~~~d~~-nd---~f~fGR~~~~d~-----~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~ 126 (475)
T KOG0615|consen 57 KSIDLA-ND---EFTFGRGDSCDA-----PLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVND 126 (475)
T ss_pred ccceec-cc---eEEecCCCcccc-----cccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccH
Confidence 345555 56 899999999998 77777677777766432 246999995 999999999
Q ss_pred CCCceeecCCCCcEEcCCCCEEEECCCceEEe
Q 006440 608 NEGRRYRVSSNFPARFRPSDTIEFGSDKKVMN 639 (645)
Q Consensus 608 ~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~ 639 (645)
. ++..+....|+.||+|.+|-.....|
T Consensus 127 e-----~i~k~~~r~lkN~dei~is~p~~~~~ 153 (475)
T KOG0615|consen 127 E-----MIGKGLSRILKNGDEISISIPALKIF 153 (475)
T ss_pred h-----HhhccccccccCCCEEEeccchhhee
Confidence 8 99999999999999999996644333
No 214
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.53 E-value=8.1e-05 Score=81.20 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999984
No 215
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.52 E-value=0.00029 Score=79.15 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.6
Q ss_pred cEEEEcCCHHHHHHHHHHH----HCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAK----RKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~----~~g~~~~~~~~~~~ 111 (645)
||+|||+|.|||++|+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 78999999999754
No 216
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=8.7e-05 Score=78.92 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
++|+|+|||+|||+||+.|+.+|++|+|+|+++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence 3799999999999999999999999999999764
No 217
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.51 E-value=9.6e-05 Score=81.07 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.+|||+||||||+|+++|..++++|++|+|+|+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999974
No 218
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.50 E-value=0.00058 Score=71.29 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=71.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCccccCCCCcccceeeCchHH--HHHHhcChhHHHHHHHhcccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNAL--AALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~--~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
.+|+|+||.||++|++|+.|...+ .++..+|+.+......| +.+....+ ..|+.|-. -..+....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-----mll~~~~~q~~fl~Dlvt-------~~~P~s~~ 69 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-----MLLPGARMQVSFLKDLVT-------LRDPTSPF 69 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-----G--SS-B-SS-TTSSSST-------TT-TTSTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-----cCCCCCccccccccccCc-------CcCCCCcc
Confidence 479999999999999999999886 89999998765432222 11111111 11111100 00000000
Q ss_pred ccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC--ceEEcCceEEEEEeeCC----eEEEEEc-
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVVLE- 226 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~----~v~v~~~- 226 (645)
.+..+.... +.. ..| ...+ .....|.++.++|.-.+.. ..++++.+|++|+..++ .+.|+..
T Consensus 70 sflnYL~~~-~rl-~~f------~~~~---~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~ 138 (341)
T PF13434_consen 70 SFLNYLHEH-GRL-YEF------YNRG---YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD 138 (341)
T ss_dssp SHHHHHHHT-T-H-HHH------HHH-----SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cHHHHHHHc-CCh-hhh------hhcC---CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee
Confidence 000000000 000 000 0001 1235677777777654432 22778999999987654 4778873
Q ss_pred ---CCcEEeccEEEEccCCchhhhhhh
Q 006440 227 ---NGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 227 ---~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
+++++.|+-||.|.|..-.+-..+
T Consensus 139 ~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 139 SDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp TTS-EEEEEESEEEE----EE---GGG
T ss_pred cCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 346899999999999655454444
No 219
>PRK07846 mycothione reductase; Reviewed
Probab=97.50 E-value=0.00093 Score=72.94 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=70.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--------------------~~d~~~---------------- 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--------------------HLDDDI---------------- 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--------------------ccCHHH----------------
Confidence 35899999999999999999999999999998642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+..+.+.+ + .+ ..++.++++++++.+++++.+++.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~l~-~-~~-v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~v 254 (451)
T PRK07846 210 --------------------------------SERFTELA-S-KR-WDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVL 254 (451)
T ss_pred --------------------------------HHHHHHHH-h-cC-eEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEE
Confidence 00122211 1 12 3477789999998777778888888889999999
Q ss_pred EEccCCchhh
Q 006440 237 IGADGIWSKV 246 (645)
Q Consensus 237 VgADG~~S~v 246 (645)
|.|.|.....
T Consensus 255 l~a~G~~pn~ 264 (451)
T PRK07846 255 LVATGRVPNG 264 (451)
T ss_pred EEEECCccCc
Confidence 9999986543
No 220
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.50 E-value=0.001 Score=72.29 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=40.1
Q ss_pred HHHHHHHHHcC--CceEEcCceEEEEEee--CCeEE-EEEc-CCcEEeccEEEEccCCchhhhhhh
Q 006440 191 TLQQILAKAVG--DEIILNESNVIDFKDH--GDKVS-VVLE-NGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 191 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~--~~~v~-v~~~-~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
.+.+.|.+.+. ...++++++|+++..+ ++.+. |... ++.++.++.||.|.|..+.-+..+
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45566655442 2358889999999876 33333 3333 335899999999999887655544
No 221
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.00011 Score=80.55 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=32.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.++||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999985
No 222
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.45 E-value=0.00019 Score=78.11 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHH--CCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKR--KGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~--~g~~~~~~~~~~~ 111 (645)
...+|+||||||||+.+|..|++ .|++|+|||+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 35689999999999999999997 7999999999864
No 223
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.45 E-value=0.00013 Score=80.83 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.||+|||||++||++|..|+++|++|+|+|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999999999999753
No 224
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.45 E-value=0.00017 Score=84.40 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..++|+||||||||+++|+.|+++|++|+|+|+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45799999999999999999999999999999874
No 225
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.43 E-value=0.0023 Score=77.76 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=33.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+.+.||||||+|.||+++|+.+++.|.+|+|+||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4568999999999999999999999999999999753
No 226
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.43 E-value=0.00014 Score=80.58 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCC--ceEEcCceEEEEEeeCCe-EEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 191 TLQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 191 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
.+.+.|.+.+.. ..++.+++|++|..+++. ..|.+.+|++++||.||.|-|.+..+++.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 455556555422 358889999999876554 457788898999999999999998887765
No 227
>PRK07233 hypothetical protein; Provisional
Probab=97.42 E-value=0.00014 Score=79.07 Aligned_cols=53 Identities=23% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCch
Q 006440 192 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 192 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 244 (645)
|.+.|.+.+. ...++.+++|++|+.+++++.+...+++++++|.||.|-..+.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4555555442 2358899999999988887766666778899999999988753
No 228
>PLN02576 protoporphyrinogen oxidase
Probab=97.42 E-value=0.00016 Score=80.24 Aligned_cols=35 Identities=37% Similarity=0.488 Sum_probs=32.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~ 110 (645)
..+||+|||||++||++|+.|+++ |++|+|+|++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~ 46 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 346899999999999999999999 99999999975
No 229
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.00015 Score=79.52 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=32.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999999999999999999999983
No 230
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.0014 Score=71.84 Aligned_cols=99 Identities=26% Similarity=0.325 Sum_probs=70.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||++|+.+|..|++.|.+|+++|+.+.... .++..+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~~~~----------------- 215 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP--------------------GEDKEI----------------- 215 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC--------------------cCCHHH-----------------
Confidence 5899999999999999999999999999998642110 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC---cEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~i~a~ 234 (645)
...+.+.|.+ .+ ..++.+++|++++.+++.+.+.+.++ +++.+|
T Consensus 216 -------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D 262 (462)
T PRK06416 216 -------------------------------SKLAERALKK-RG-IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEAD 262 (462)
T ss_pred -------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeC
Confidence 0122233322 23 34788999999988777787877766 679999
Q ss_pred EEEEccCCchhh
Q 006440 235 LLIGADGIWSKV 246 (645)
Q Consensus 235 lvVgADG~~S~v 246 (645)
.||.|.|.....
T Consensus 263 ~vi~a~G~~p~~ 274 (462)
T PRK06416 263 YVLVAVGRRPNT 274 (462)
T ss_pred EEEEeeCCccCC
Confidence 999999986543
No 231
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.39 E-value=0.00021 Score=82.29 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
....+|+||||||||+++|+.|+++||+|+|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 34679999999999999999999999999999985
No 232
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.37 E-value=0.0017 Score=71.25 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.... .++..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~~~~---------------- 213 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--------------------GEDAEV---------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--------------------CCCHHH----------------
Confidence 35899999999999999999999999999998642100 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC--cEEecc
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 234 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~a~ 234 (645)
...+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+| +++.+|
T Consensus 214 --------------------------------~~~~~~~l~~-~g-i~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D 259 (461)
T TIGR01350 214 --------------------------------SKVVAKALKK-KG-VKILTNTKVTAVEKNDDQVVYENKGGETETLTGE 259 (461)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeC
Confidence 0012233322 23 34778999999988777888877777 579999
Q ss_pred EEEEccCCchhhh
Q 006440 235 LLIGADGIWSKVR 247 (645)
Q Consensus 235 lvVgADG~~S~vR 247 (645)
.||.|.|..+.+.
T Consensus 260 ~vi~a~G~~p~~~ 272 (461)
T TIGR01350 260 KVLVAVGRKPNTE 272 (461)
T ss_pred EEEEecCCcccCC
Confidence 9999999877554
No 233
>PRK06116 glutathione reductase; Validated
Probab=97.36 E-value=0.0018 Score=70.82 Aligned_cols=99 Identities=26% Similarity=0.319 Sum_probs=70.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~~~~~---------------- 210 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR--------------------GFDPDI---------------- 210 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc--------------------ccCHHH----------------
Confidence 35899999999999999999999999999997642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCe-EEEEEcCCcEEeccE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDL 235 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~l 235 (645)
+..+.+.|.+ .+ ..++.+++|++++.++++ +.+.+.+|+++.+|.
T Consensus 211 --------------------------------~~~l~~~L~~-~G-V~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~ 256 (450)
T PRK06116 211 --------------------------------RETLVEEMEK-KG-IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDC 256 (450)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCE
Confidence 0122233322 12 347789999999876555 778888898999999
Q ss_pred EEEccCCchh
Q 006440 236 LIGADGIWSK 245 (645)
Q Consensus 236 vVgADG~~S~ 245 (645)
||.|.|....
T Consensus 257 Vv~a~G~~p~ 266 (450)
T PRK06116 257 LIWAIGREPN 266 (450)
T ss_pred EEEeeCCCcC
Confidence 9999997543
No 234
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.36 E-value=0.0036 Score=74.21 Aligned_cols=36 Identities=39% Similarity=0.567 Sum_probs=33.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+|||+|.||+.+|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999754
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=97.35 E-value=0.00026 Score=77.42 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....+|+||||||+|+++|..|+++|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 346799999999999999999999999999999864
No 236
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.35 E-value=0.0002 Score=84.31 Aligned_cols=35 Identities=40% Similarity=0.462 Sum_probs=32.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+|||||||||++|..|+++|++|+|||+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 35799999999999999999999999999999874
No 237
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.34 E-value=0.00022 Score=75.08 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+||+|||||++|+++|..|++.|.+|+|+|++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 699999999999999999999999999999864
No 238
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.34 E-value=0.00046 Score=77.28 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+|++|+++|+.++++|.+|+|+|+.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 468999999999999999999999999999999753
No 239
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.34 E-value=0.0031 Score=63.07 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=31.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeccCcc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSA 112 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~~ 112 (645)
..||+|||||..|++.|++|.++ |++|+++|++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 57999999999999999999764 8999999997643
No 240
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.33 E-value=0.00021 Score=78.47 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
|||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 69999999999999999999999999999986
No 241
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.32 E-value=0.00021 Score=78.43 Aligned_cols=33 Identities=39% Similarity=0.684 Sum_probs=31.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.|||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999983
No 242
>PLN02268 probable polyamine oxidase
Probab=97.30 E-value=0.00024 Score=77.36 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=34.9
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCC
Q 006440 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~ 242 (645)
.++++++|++|...++++.|++.+|+++.||.||.|.-.
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 388899999999999999999999988999999999743
No 243
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0013 Score=69.56 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=34.5
Q ss_pred eEEcCceEEEEEee--CCeEEEEEcCCcEEeccEEEEccCCchhhhhh
Q 006440 204 IILNESNVIDFKDH--GDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 249 (645)
Q Consensus 204 ~i~~~~~v~~i~~~--~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~ 249 (645)
..+...+.+++... ..++.++..+|....||.+|.|.|.--+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34456777887776 56688888999999999999999975444433
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.28 E-value=0.0024 Score=69.77 Aligned_cols=98 Identities=23% Similarity=0.331 Sum_probs=70.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+++++.+... ..++..+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------~~~d~~~~--------------- 213 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------RHLDEDIS--------------- 213 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------cccCHHHH---------------
Confidence 3589999999999999999999999999999753210 00100000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
..+.+.+ + .+ ..++.+++|++++.+++++.+++.+|+++.+|.|
T Consensus 214 ---------------------------------~~l~~~~-~-~g-I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~v 257 (452)
T TIGR03452 214 ---------------------------------DRFTEIA-K-KK-WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVL 257 (452)
T ss_pred ---------------------------------HHHHHHH-h-cC-CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEE
Confidence 0122211 1 12 3477889999998777778888888888999999
Q ss_pred EEccCCchh
Q 006440 237 IGADGIWSK 245 (645)
Q Consensus 237 VgADG~~S~ 245 (645)
|.|.|....
T Consensus 258 l~a~G~~pn 266 (452)
T TIGR03452 258 LVATGRVPN 266 (452)
T ss_pred EEeeccCcC
Confidence 999997654
No 245
>PLN02507 glutathione reductase
Probab=97.28 E-value=0.0026 Score=70.28 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=71.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.... .++..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d~~~---------------- 246 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR--------------------GFDDEM---------------- 246 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc--------------------ccCHHH----------------
Confidence 35899999999999999999999999999997642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+|+++.+|.|
T Consensus 247 --------------------------------~~~l~~~l~~-~G-I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~v 292 (499)
T PLN02507 247 --------------------------------RAVVARNLEG-RG-INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVV 292 (499)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEE
Confidence 0122333322 12 3477889999998777778888888889999999
Q ss_pred EEccCCchhh
Q 006440 237 IGADGIWSKV 246 (645)
Q Consensus 237 VgADG~~S~v 246 (645)
|.|-|.....
T Consensus 293 l~a~G~~pn~ 302 (499)
T PLN02507 293 LFATGRAPNT 302 (499)
T ss_pred EEeecCCCCC
Confidence 9999987554
No 246
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.26 E-value=0.00023 Score=79.07 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcC--CceEEcCceEEEEEeeCCe-EEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
..+.+.|.+.+. ...++.+++|++|..++++ +.|++++|++++||.||.|-+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 345555555442 2358889999999877665 568888888999999999998877776654
No 247
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.25 E-value=0.0018 Score=69.12 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~ 110 (645)
.+|+|||||+||+.+|..|.+. ..+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999886 45799999875
No 248
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.24 E-value=0.00029 Score=75.99 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=33.7
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+..+||+|||+|++|+.+|..|++.|.+|+++|++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~ 37 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP 37 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCC
Confidence 457999999999999999999999999999999975
No 249
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.22 E-value=0.00033 Score=77.39 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.|||+||||||+|+.+|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 250
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.22 E-value=0.00047 Score=75.19 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...++|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346799999999999999999999999999999864
No 251
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.21 E-value=0.0035 Score=68.41 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=69.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.... .++ +++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d----~~~------------ 209 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR--------------------GFD----DDM------------ 209 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc--------------------ccC----HHH------------
Confidence 35799999999999999999999999999997532100 000 000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+..+.+.|.+ .+ ..++.++++++++.+++++.+++.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 210 --------------------------------RALLARNMEG-RG-IRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVV 255 (446)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEE
Confidence 0112233322 12 3477789999998777777788888889999999
Q ss_pred EEccCCch
Q 006440 237 IGADGIWS 244 (645)
Q Consensus 237 VgADG~~S 244 (645)
|.|-|...
T Consensus 256 iva~G~~p 263 (446)
T TIGR01424 256 LFATGRSP 263 (446)
T ss_pred EEeeCCCc
Confidence 99999754
No 252
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.21 E-value=0.0034 Score=68.88 Aligned_cols=100 Identities=26% Similarity=0.386 Sum_probs=71.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||+|..|+.+|..|++.|.+|+++++.+..... .+..+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~----------------- 220 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG--------------------EDADA----------------- 220 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC--------------------CCHHH-----------------
Confidence 57999999999999999999999999999975321100 00000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.|.+ .+ ..++.++++++++.+++++.+.+.+|+++.+|.||
T Consensus 221 -------------------------------~~~l~~~L~~-~g-V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl 267 (466)
T PRK07845 221 -------------------------------AEVLEEVFAR-RG-MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHAL 267 (466)
T ss_pred -------------------------------HHHHHHHHHH-CC-cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEE
Confidence 0122333322 12 23777899999987777788888888899999999
Q ss_pred EccCCchhhh
Q 006440 238 GADGIWSKVR 247 (645)
Q Consensus 238 gADG~~S~vR 247 (645)
.|.|......
T Consensus 268 ~a~G~~pn~~ 277 (466)
T PRK07845 268 MAVGSVPNTA 277 (466)
T ss_pred EeecCCcCCC
Confidence 9999876543
No 253
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.19 E-value=0.0019 Score=68.48 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHC---CCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRK---GFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~---g~~~~~~~~~~ 110 (645)
+|+|||||++|+.+|..|.++ +++|+|+|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999644 78999999864
No 254
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.19 E-value=0.00047 Score=74.05 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHH-HHCCCeEEEEeccCcc
Q 006440 77 KLRILVAGGGIGGLVFALAA-KRKGFEVLVFEKDMSA 112 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l-~~~g~~~~~~~~~~~~ 112 (645)
..+|+||||||||+.+|..| ++.|++|+|+|+.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46899999999999999965 5679999999998643
No 255
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.19 E-value=0.00052 Score=78.56 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=33.7
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.....+|+|||||++|+++|+.|++.|++|+|+|++.
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 3456799999999999999999999999999999965
No 256
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.17 E-value=0.00043 Score=80.69 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+||||||||+++|..|+++|++|+|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 457899999999999999999999999999998753
No 257
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.17 E-value=0.00038 Score=76.22 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=42.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcccc-------CCCC-cccc----eeeCchHHHHHHhcC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-------GEGQ-YRGP----IQIQSNALAALEAID 137 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-------~~g~-~~~~----~~l~~~~~~~l~~l~ 137 (645)
+|+|||||++||++|+.|+++|++|+|+|+.+...- ..|. .+.+ ....++.+++++++|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg 71 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELN 71 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcC
Confidence 589999999999999999999999999998753210 0110 0011 123477788888884
No 258
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.16 E-value=0.0041 Score=68.10 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=67.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||++|+.+|..|++.|.+|+++++.+.... ..+ .++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~--------------------~~d----~e~------------ 213 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP--------------------GED----EDI------------ 213 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc--------------------ccc----HHH------------
Confidence 35899999999999999999999999999998632100 000 000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC-cEEeccE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDL 235 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~i~a~l 235 (645)
+..+.+.|.+ .+ ..++.++++++++.++..+.+...++ .++.+|+
T Consensus 214 --------------------------------~~~l~~~L~~-~G-I~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~ 259 (458)
T PRK06912 214 --------------------------------AHILREKLEN-DG-VKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEF 259 (458)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEECCEEEEEEEcCCEEEEEECCceEEEEeCE
Confidence 1123333332 23 34778889999987666555543322 3699999
Q ss_pred EEEccCCchhhh
Q 006440 236 LIGADGIWSKVR 247 (645)
Q Consensus 236 vVgADG~~S~vR 247 (645)
||.|.|....+.
T Consensus 260 vivA~G~~p~~~ 271 (458)
T PRK06912 260 VLVSVGRKPRVQ 271 (458)
T ss_pred EEEecCCccCCC
Confidence 999999877653
No 259
>PRK13748 putative mercuric reductase; Provisional
Probab=97.15 E-value=0.00044 Score=77.92 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=32.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 260
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.15 E-value=0.004 Score=67.99 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=69.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||..|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~--------------------~~d~~~---------------- 209 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR--------------------SFDSMI---------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc--------------------ccCHHH----------------
Confidence 35899999999999999999999999999998642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCe-EEEEEcCC-cEEecc
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGD 234 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-~~i~a~ 234 (645)
+..+.+.|.+ .+ ..++.++++++++.++++ +.+++++| +.+.+|
T Consensus 210 --------------------------------~~~~~~~l~~-~g-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 210 --------------------------------SETITEEYEK-EG-INVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVD 255 (450)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcC
Confidence 0122333322 12 337788899999865444 67778778 579999
Q ss_pred EEEEccCCchhh
Q 006440 235 LLIGADGIWSKV 246 (645)
Q Consensus 235 lvVgADG~~S~v 246 (645)
.||.|-|.....
T Consensus 256 ~vi~a~G~~pn~ 267 (450)
T TIGR01421 256 ELIWAIGRKPNT 267 (450)
T ss_pred EEEEeeCCCcCc
Confidence 999999976443
No 261
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.00053 Score=68.10 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=32.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|++|||+|++|+.+|..|++.|.+|.|+|+++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 7999999999999999999999999999999864
No 262
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.13 E-value=0.0059 Score=63.79 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~ 152 (645)
.....|+|||||..+..++..|.+++- +|+++=|.+......-.....-...|.-++.+..+....-.++.+...
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~--- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR--- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG---
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH---
Confidence 345789999999999999999999875 899998875332211100001135666666666664333223322210
Q ss_pred cccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHH---HHHHH-Hc-C--CceEEcCceEEEEEeeCC-eEEEE
Q 006440 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQ---QILAK-AV-G--DEIILNESNVIDFKDHGD-KVSVV 224 (645)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~---~~L~~-~~-~--~~~i~~~~~v~~i~~~~~-~v~v~ 224 (645)
.. . + -.|+...++ +.|.+ .+ + ...++.+++|++++..++ ++.++
T Consensus 265 -~~-------n-----------------y---~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~ 316 (341)
T PF13434_consen 265 -HT-------N-----------------Y---GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLT 316 (341)
T ss_dssp -GG-------T-----------------S---SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEE
T ss_pred -hh-------c-----------------C---CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEE
Confidence 00 0 0 022232222 22222 12 2 235888999999999884 89988
Q ss_pred EcCC-----cEEeccEEEEccCC
Q 006440 225 LENG-----QCYAGDLLIGADGI 242 (645)
Q Consensus 225 ~~~g-----~~i~a~lvVgADG~ 242 (645)
+.+. .++++|.||.|.|-
T Consensus 317 ~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 317 LRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EEETTT--EEEEEESEEEE---E
T ss_pred EEECCCCCeEEEecCEEEEcCCc
Confidence 8752 47899999999995
No 263
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.13 E-value=0.00035 Score=71.80 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=29.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~ 110 (645)
||+||||+|++|+.+|..|++.| .+|+|+|+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 69999999999999999999997 7999999865
No 264
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.12 E-value=0.00053 Score=72.61 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=40.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAI 136 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l 136 (645)
+||+|||+|++|+++|+.|+++|++|.|+|+... .+.++..++.+|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~----------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS----------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc----------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998642 244566667777665
No 265
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.12 E-value=0.0039 Score=67.95 Aligned_cols=99 Identities=26% Similarity=0.324 Sum_probs=67.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||++|+.+|..|++.|.+|+++|+.+..... .+ +++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~----~~~------------ 200 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR--------------------EE----PSV------------ 200 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC--------------------CC----HHH------------
Confidence 357999999999999999999999999999986421100 00 000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
+..+.+.|.+ .+ ..++.+++|++++.+++.+.++. +++++.+|.|
T Consensus 201 --------------------------------~~~~~~~l~~-~G-I~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~v 245 (438)
T PRK07251 201 --------------------------------AALAKQYMEE-DG-ITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDAL 245 (438)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEE
Confidence 0012222222 23 33777889999987666666554 5678999999
Q ss_pred EEccCCchhh
Q 006440 237 IGADGIWSKV 246 (645)
Q Consensus 237 VgADG~~S~v 246 (645)
|.|-|.....
T Consensus 246 iva~G~~p~~ 255 (438)
T PRK07251 246 LYATGRKPNT 255 (438)
T ss_pred EEeeCCCCCc
Confidence 9999987553
No 266
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.12 E-value=0.0051 Score=67.60 Aligned_cols=99 Identities=29% Similarity=0.286 Sum_probs=69.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~--------------------~~d~~~----------------- 217 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP--------------------AADKDI----------------- 217 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC--------------------cCCHHH-----------------
Confidence 5899999999999999999999999999998642110 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC----cEEec
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYAG 233 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i~a 233 (645)
+..+.+.|.+. ..++.+++++.++.+++++.+++.++ +++.+
T Consensus 218 -------------------------------~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~ 263 (471)
T PRK06467 218 -------------------------------VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRY 263 (471)
T ss_pred -------------------------------HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEe
Confidence 01222333222 23677889999987777777776542 36999
Q ss_pred cEEEEccCCchhhh
Q 006440 234 DLLIGADGIWSKVR 247 (645)
Q Consensus 234 ~lvVgADG~~S~vR 247 (645)
|.||.|.|....+.
T Consensus 264 D~vi~a~G~~pn~~ 277 (471)
T PRK06467 264 DAVLVAVGRVPNGK 277 (471)
T ss_pred CEEEEeecccccCC
Confidence 99999999977654
No 267
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.11 E-value=0.00051 Score=71.70 Aligned_cols=34 Identities=38% Similarity=0.670 Sum_probs=32.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+++|||||++|+++|+.|++.|++|.++|+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999985
No 268
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0047 Score=67.85 Aligned_cols=100 Identities=30% Similarity=0.414 Sum_probs=69.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... ..+..+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~--------------------~~d~~~---------------- 215 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP--------------------NEDAEV---------------- 215 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------ccCHHH----------------
Confidence 35899999999999999999999999999997532110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEc--CC--cEEe
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--NG--QCYA 232 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~i~ 232 (645)
+..+.+.|.+ .+ ..++.+++|++++.+++.+.+++. +| +++.
T Consensus 216 --------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~ 261 (466)
T PRK07818 216 --------------------------------SKEIAKQYKK-LG-VKILTGTKVESIDDNGSKVTVTVSKKDGKAQELE 261 (466)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEE
Confidence 0122333322 23 347789999999877666666654 56 4799
Q ss_pred ccEEEEccCCchhh
Q 006440 233 GDLLIGADGIWSKV 246 (645)
Q Consensus 233 a~lvVgADG~~S~v 246 (645)
+|.||.|-|....+
T Consensus 262 ~D~vi~a~G~~pn~ 275 (466)
T PRK07818 262 ADKVLQAIGFAPRV 275 (466)
T ss_pred eCEEEECcCcccCC
Confidence 99999999986554
No 269
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.11 E-value=0.00063 Score=81.28 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+||+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 358999999999999999999999999999998753
No 270
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0027 Score=66.21 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=80.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccc------cCCCCcccceeeCchHHHHHHhcChhHHHHHHHhc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~------~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~ 148 (645)
...+||||||||=||+.+|.+.+|.|-+.+++-.+-... +..|..+.++ -++-.++|+ |+...+.+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~-----LmrEVDALd-Gl~~rvcD~s 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGH-----LMREVDALD-GLCSRVCDQS 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccce-----eeeeehhhc-chHhhhhhhh
Confidence 567999999999999999999999999999998753321 1111111111 122334444 5544444332
Q ss_pred cccccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCc---eEEcCceEEEEEee-CC-----
Q 006440 149 CVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE---IILNESNVIDFKDH-GD----- 219 (645)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---~i~~~~~v~~i~~~-~~----- 219 (645)
...... .+...|..+ .|. -..++|....+.+.+.+... .|+ ...|.++... ++
T Consensus 100 ~vq~k~----LNrs~GPAV-----------wg~--RAQiDR~lYkk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~ 161 (679)
T KOG2311|consen 100 GVQYKV----LNRSKGPAV-----------WGL--RAQIDRKLYKKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCV 161 (679)
T ss_pred hhhHHH----hhccCCCcc-----------cCh--HHhhhHHHHHHHHHHHhccCCcchhh-hhhhhheeeccCCCCceE
Confidence 211111 111111100 000 12466666666666655322 243 3455565422 22
Q ss_pred eEEEEEcCCcEEeccEEEEccCCc
Q 006440 220 KVSVVLENGQCYAGDLLIGADGIW 243 (645)
Q Consensus 220 ~v~v~~~~g~~i~a~lvVgADG~~ 243 (645)
...|.+.||..+.|+-||...|..
T Consensus 162 ~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 162 VSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred EEEEEEecCcEeccceEEEeeccc
Confidence 134778899999999999999963
No 271
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.09 E-value=0.0007 Score=78.81 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=32.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+||||||||+++|..|+++|++|+|+|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999999999999999999999999999854
No 272
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.09 E-value=0.00061 Score=81.10 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+|||||||||++|..|+++|++|+|+|+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999999864
No 273
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.09 E-value=0.00063 Score=74.75 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=32.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..++|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45799999999999999999999999999999875
No 274
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.08 E-value=0.00069 Score=74.20 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....+|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 345799999999999999999999999999999875
No 275
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.07 E-value=0.00063 Score=77.88 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=32.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+||||||+|+++|..|++.|++|+|+|+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999999999999999999999999864
No 276
>PLN02487 zeta-carotene desaturase
Probab=97.07 E-value=0.00076 Score=75.01 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~ 109 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPF 109 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCC
Confidence 346999999999999999999999999999998764
No 277
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.06 E-value=0.0041 Score=72.58 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=68.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... +.++...
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------~~ld~~~----------------- 184 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------KQLDQTA----------------- 184 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------hhcCHHH-----------------
Confidence 5799999999999999999999999999997532100 0010000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.|.+ .+. .++.+++++++..++....|++.||+++.+|+||
T Consensus 185 -------------------------------~~~l~~~l~~-~GV-~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi 231 (785)
T TIGR02374 185 -------------------------------GRLLQRELEQ-KGL-TFLLEKDTVEIVGATKADRIRFKDGSSLEADLIV 231 (785)
T ss_pred -------------------------------HHHHHHHHHH-cCC-EEEeCCceEEEEcCCceEEEEECCCCEEEcCEEE
Confidence 0112222222 233 3777888888876555566888999999999999
Q ss_pred EccCCchh
Q 006440 238 GADGIWSK 245 (645)
Q Consensus 238 gADG~~S~ 245 (645)
.|-|....
T Consensus 232 ~a~G~~Pn 239 (785)
T TIGR02374 232 MAAGIRPN 239 (785)
T ss_pred ECCCCCcC
Confidence 99998643
No 278
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.06 E-value=0.0046 Score=67.85 Aligned_cols=100 Identities=27% Similarity=0.262 Sum_probs=68.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+.... .++..+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~--------------------~~d~~~---------------- 217 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP--------------------GTDTET---------------- 217 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC--------------------CCCHHH----------------
Confidence 46899999999999999999999999999997532110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEc---C--CcEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---N--GQCY 231 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~--g~~i 231 (645)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+++. + ++++
T Consensus 218 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i 263 (466)
T PRK06115 218 --------------------------------AKTLQKALTK-QG-MKFKLGSKVTGATAGADGVSLTLEPAAGGAAETL 263 (466)
T ss_pred --------------------------------HHHHHHHHHh-cC-CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEE
Confidence 0112222322 12 347788999999876667666543 2 3579
Q ss_pred eccEEEEccCCchhh
Q 006440 232 AGDLLIGADGIWSKV 246 (645)
Q Consensus 232 ~a~lvVgADG~~S~v 246 (645)
.+|.||.|.|....+
T Consensus 264 ~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 264 QADYVLVAIGRRPYT 278 (466)
T ss_pred EeCEEEEccCCcccc
Confidence 999999999987554
No 279
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.06 E-value=0.00063 Score=72.87 Aligned_cols=34 Identities=44% Similarity=0.656 Sum_probs=32.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999863
No 280
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.05 E-value=0.0012 Score=73.85 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=32.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.++||+|||+|++|+++|+.+++.|.+|+|+|+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~ 39 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQD 39 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36899999999999999999999999999999874
No 281
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.04 E-value=0.0057 Score=67.18 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=67.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||+|++|+.+|..|++.|.+|+++++.+.... ..+..+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~----------------- 209 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP--------------------REEPEI----------------- 209 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC--------------------ccCHHH-----------------
Confidence 6899999999999999999999999999998632110 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcC---CcEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN---GQCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~~i~a~ 234 (645)
...+.+.|.+ .+ ..++.+++|+.++.+++.+.+++.+ ++++.+|
T Consensus 210 -------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D 256 (463)
T TIGR02053 210 -------------------------------SAAVEEALAE-EG-IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEAD 256 (463)
T ss_pred -------------------------------HHHHHHHHHH-cC-CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeC
Confidence 0122333322 22 3377889999998766666665542 3579999
Q ss_pred EEEEccCCchhh
Q 006440 235 LLIGADGIWSKV 246 (645)
Q Consensus 235 lvVgADG~~S~v 246 (645)
.||.|.|.....
T Consensus 257 ~ViiA~G~~p~~ 268 (463)
T TIGR02053 257 ELLVATGRRPNT 268 (463)
T ss_pred EEEEeECCCcCC
Confidence 999999986554
No 282
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.03 E-value=0.0038 Score=73.03 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=31.6
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
.++.+++|++++.+. ..|++.+|+++.+|.||.|.|....
T Consensus 75 ~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 75 KVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred EEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCcC
Confidence 477788899887654 3466778889999999999998654
No 283
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.02 E-value=0.001 Score=72.93 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=32.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~ 111 (645)
...+|+|||||++||++|..|++. |.+|+|+|+.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 346899999999999999999995 689999999764
No 284
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.00 E-value=0.0053 Score=67.61 Aligned_cols=100 Identities=27% Similarity=0.264 Sum_probs=69.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.... ..+..+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~~--------------- 227 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA--------------------AADEQVA--------------- 227 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC--------------------cCCHHHH---------------
Confidence 35899999999999999999999999999998642110 0000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC----cEEe
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYA 232 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~i~ 232 (645)
..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.++ +++.
T Consensus 228 ---------------------------------~~~~~~l~~-~g-i~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~ 272 (475)
T PRK06327 228 ---------------------------------KEAAKAFTK-QG-LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE 272 (475)
T ss_pred ---------------------------------HHHHHHHHH-cC-cEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEE
Confidence 012222222 12 34778899999988777777776543 4699
Q ss_pred ccEEEEccCCchhh
Q 006440 233 GDLLIGADGIWSKV 246 (645)
Q Consensus 233 a~lvVgADG~~S~v 246 (645)
+|.||.|.|....+
T Consensus 273 ~D~vl~a~G~~p~~ 286 (475)
T PRK06327 273 VDKLIVSIGRVPNT 286 (475)
T ss_pred cCEEEEccCCccCC
Confidence 99999999987654
No 285
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.00 E-value=0.00069 Score=75.21 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+| +|+++|+.+++.|.+|+|+||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 36899999999 999999999999999999998753
No 286
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.99 E-value=0.0047 Score=62.85 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=33.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.++||+|||+||.|-.+|+..++.|++.+++|++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 57999999999999999999999999999999964
No 287
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.98 E-value=0.00073 Score=74.18 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999999999999999999999999999753
No 288
>PRK06370 mercuric reductase; Validated
Probab=96.97 E-value=0.0064 Score=66.75 Aligned_cols=100 Identities=27% Similarity=0.365 Sum_probs=67.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.... ..+..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~~~~~---------------- 214 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP--------------------REDEDV---------------- 214 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc--------------------ccCHHH----------------
Confidence 36899999999999999999999999999998642110 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEc--C-CcEEec
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--N-GQCYAG 233 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~-g~~i~a 233 (645)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+. + +.++.+
T Consensus 215 --------------------------------~~~l~~~l~~-~G-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 260 (463)
T PRK06370 215 --------------------------------AAAVREILER-EG-IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITG 260 (463)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0112222322 22 347788999999877666555442 3 457999
Q ss_pred cEEEEccCCchhh
Q 006440 234 DLLIGADGIWSKV 246 (645)
Q Consensus 234 ~lvVgADG~~S~v 246 (645)
|.||.|.|.....
T Consensus 261 D~Vi~A~G~~pn~ 273 (463)
T PRK06370 261 SHILVAVGRVPNT 273 (463)
T ss_pred CEEEECcCCCcCC
Confidence 9999999986554
No 289
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.97 E-value=0.0077 Score=66.27 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||++|+.+|..|++.|.+|+++|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 3589999999999999999999999999999864
No 290
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.97 E-value=0.00097 Score=76.12 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=33.0
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999999999998753
No 291
>PRK07846 mycothione reductase; Reviewed
Probab=96.94 E-value=0.0039 Score=68.11 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+||||||+|.++|.. +.|.+|+|+|+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 3899999999999988865 469999999985
No 292
>PRK02106 choline dehydrogenase; Validated
Probab=96.94 E-value=0.00093 Score=75.12 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKR-KGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~-~g~~~~~~~~~~ 110 (645)
...+|+||||+|++|+.+|..|++ .|++|+|+|+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 346899999999999999999999 899999999974
No 293
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.94 E-value=0.0011 Score=74.57 Aligned_cols=36 Identities=39% Similarity=0.696 Sum_probs=33.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.++||+|||+|++|+++|+.++++|.+|+|+||...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 468999999999999999999999999999999753
No 294
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.90 E-value=0.007 Score=66.93 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=67.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|++.|.+|+++++.. ... .++..+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~--------------------~~d~~~~---------------- 225 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLR--------------------GFDRQCS---------------- 225 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccc--------------------cCCHHHH----------------
Confidence 479999999999999999999999999998631 110 0100000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
..+.+.|.+ .+ ..++.+++++.++..++.+.+.+.+|+++.+|.||
T Consensus 226 --------------------------------~~l~~~l~~-~G-V~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl 271 (499)
T PTZ00052 226 --------------------------------EKVVEYMKE-QG-TLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVL 271 (499)
T ss_pred --------------------------------HHHHHHHHH-cC-CEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence 112222322 12 23677888888876666677888888889999999
Q ss_pred EccCCchh
Q 006440 238 GADGIWSK 245 (645)
Q Consensus 238 gADG~~S~ 245 (645)
.|-|....
T Consensus 272 ~a~G~~pn 279 (499)
T PTZ00052 272 YATGRKPD 279 (499)
T ss_pred EeeCCCCC
Confidence 99998654
No 295
>PLN02676 polyamine oxidase
Probab=96.90 E-value=0.0011 Score=73.05 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcC--------CceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchh
Q 006440 189 RMTLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (645)
Q Consensus 189 r~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 245 (645)
-..|-+.|.+.+. ...|+++++|++|+.++++|+|++.+|++++||.||.|...+..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 3455666666541 13488999999999999999999999999999999999986543
No 296
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.90 E-value=0.001 Score=73.31 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (645)
+||+|||+||+|+.+|..|+++|++|+++|+....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 69999999999999999999999999999997644
No 297
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.89 E-value=0.003 Score=68.96 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|||+|||+||+|..+|. ++.|.+|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence 589999999999988864 4579999999985
No 298
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.89 E-value=0.0013 Score=72.20 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=32.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45799999999999999999999999999999875
No 299
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.87 E-value=0.0075 Score=70.60 Aligned_cols=100 Identities=24% Similarity=0.297 Sum_probs=69.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
..++|||||+.|+.+|..|++.|.+|+|+|+.+.... ..++...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------~~ld~~~----------------- 189 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------EQLDQMG----------------- 189 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------hhcCHHH-----------------
Confidence 4799999999999999999999999999997531100 0010000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeC--CeEEEEEcCCcEEeccE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGDL 235 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~a~l 235 (645)
...+.+.|. ..+. .++.+++++++..++ ....+.+.+|+++.+|+
T Consensus 190 -------------------------------~~~l~~~L~-~~GV-~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~ 236 (847)
T PRK14989 190 -------------------------------GEQLRRKIE-SMGV-RVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236 (847)
T ss_pred -------------------------------HHHHHHHHH-HCCC-EEEcCCeEEEEEecCCCceEEEEECCCCEEEcCE
Confidence 012233332 2233 377888999887543 34567889999999999
Q ss_pred EEEccCCchhh
Q 006440 236 LIGADGIWSKV 246 (645)
Q Consensus 236 vVgADG~~S~v 246 (645)
||.|-|.....
T Consensus 237 Vv~A~G~rPn~ 247 (847)
T PRK14989 237 IVFSTGIRPQD 247 (847)
T ss_pred EEECCCcccCc
Confidence 99999986553
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.87 E-value=0.008 Score=65.44 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 579999999999999999999999999999863
No 301
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0018 Score=64.83 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEE
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVF 106 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~ 106 (645)
...|||+||||||||.++|+..||+|++.=++
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 44699999999999999999999999987655
No 302
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.85 E-value=0.0014 Score=65.18 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=33.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+...||+|||+|.+||.+|..|+.+|.+|+|+|....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 3468999999999999999999999999999998654
No 303
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.013 Score=64.41 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3589999999999999999999999999999863
No 304
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.84 E-value=0.0093 Score=64.74 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=65.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||++|+.+|..|++.|.+|+++++.+.... ..++..+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------~~~~~~~----------------- 181 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------KLFDEEM----------------- 181 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------cccCHHH-----------------
Confidence 5899999999999999999999999999997632100 0000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.|.+ .+. .++.++++++++.++. + +.+.+|+++.+|.||
T Consensus 182 -------------------------------~~~~~~~l~~-~gV-~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi 226 (427)
T TIGR03385 182 -------------------------------NQIVEEELKK-HEI-NLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVI 226 (427)
T ss_pred -------------------------------HHHHHHHHHH-cCC-EEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEE
Confidence 0112222222 233 3677889999876443 3 566788899999999
Q ss_pred EccCCchh
Q 006440 238 GADGIWSK 245 (645)
Q Consensus 238 gADG~~S~ 245 (645)
.|.|....
T Consensus 227 ~a~G~~p~ 234 (427)
T TIGR03385 227 LATGIKPN 234 (427)
T ss_pred ECCCccCC
Confidence 99998643
No 305
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.83 E-value=0.011 Score=64.38 Aligned_cols=98 Identities=26% Similarity=0.262 Sum_probs=68.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.... ..+..+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~~~~----------------- 201 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP--------------------REDRDI----------------- 201 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC--------------------CcCHHH-----------------
Confidence 5899999999999999999999999999998632110 000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
...+.+.|.+ .+ ..++.++++++++.+++.+.+..+++ ++.+|.||
T Consensus 202 -------------------------------~~~l~~~l~~-~g-V~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl 247 (441)
T PRK08010 202 -------------------------------ADNIATILRD-QG-VDIILNAHVERISHHENQVQVHSEHA-QLAVDALL 247 (441)
T ss_pred -------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEE
Confidence 0012222222 12 33777899999987777777766555 58999999
Q ss_pred EccCCchhh
Q 006440 238 GADGIWSKV 246 (645)
Q Consensus 238 gADG~~S~v 246 (645)
.|-|.....
T Consensus 248 ~a~G~~pn~ 256 (441)
T PRK08010 248 IASGRQPAT 256 (441)
T ss_pred EeecCCcCC
Confidence 999987654
No 306
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.81 E-value=0.0041 Score=72.53 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.9
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCch
Q 006440 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 244 (645)
.++.+++|++++.+. ..|++.+|+++.+|.||.|.|...
T Consensus 70 ~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 70 TLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred EEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 477889999997654 356678888999999999999864
No 307
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.81 E-value=0.011 Score=64.96 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=67.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKR---KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~---~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~ 153 (645)
..+|+|||||+.|+.+|..++. .|.+|+|+|+.+...+ .++..+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~--------------------~~d~~~~------------ 234 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR--------------------GFDSTLR------------ 234 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc--------------------ccCHHHH------------
Confidence 3579999999999999987654 4999999997642110 0100000
Q ss_pred ccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCe-EEEEEcCCcEEe
Q 006440 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYA 232 (645)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~ 232 (645)
..+.+.|.+ .+ ..++.++++++++.++++ ..+.+.+++++.
T Consensus 235 ------------------------------------~~l~~~L~~-~G-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~ 276 (486)
T TIGR01423 235 ------------------------------------KELTKQLRA-NG-INIMTNENPAKVTLNADGSKHVTFESGKTLD 276 (486)
T ss_pred ------------------------------------HHHHHHHHH-cC-CEEEcCCEEEEEEEcCCceEEEEEcCCCEEE
Confidence 122333322 22 337778899999865444 567777888899
Q ss_pred ccEEEEccCCchhhh
Q 006440 233 GDLLIGADGIWSKVR 247 (645)
Q Consensus 233 a~lvVgADG~~S~vR 247 (645)
+|.||.|-|......
T Consensus 277 ~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 277 VDVVMMAIGRVPRTQ 291 (486)
T ss_pred cCEEEEeeCCCcCcc
Confidence 999999999876543
No 308
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.81 E-value=0.0012 Score=72.46 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~ 109 (645)
.+|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999997 9999999974
No 309
>PLN02612 phytoene desaturase
Probab=96.81 E-value=0.0015 Score=73.23 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=32.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....+|+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345789999999999999999999999999999864
No 310
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.78 E-value=0.0018 Score=73.87 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.1
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+|||+||+|+++|..|++.|++|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 357899999999999999999999999999998753
No 311
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.73 E-value=0.0021 Score=67.90 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=32.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+|+|||||++|+.+|..|++.|++|+++|+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46899999999999999999999999999998653
No 312
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.72 E-value=0.0017 Score=71.97 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=34.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (645)
..++||+|||||.|||.+|+.++..|++|+|+||....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 45789999999999999999999999999999997543
No 313
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.72 E-value=0.015 Score=62.63 Aligned_cols=100 Identities=27% Similarity=0.328 Sum_probs=68.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|++|+.+|..|+++|++|+++|+.+.... .+ +...+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~--------------------~~---~~~~~------------ 180 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG--------------------QL---LDPEV------------ 180 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch--------------------hh---hhHHH------------
Confidence 36899999999999999999999999999998743210 00 00000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEE---EEEcCCcEEec
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVS---VVLENGQCYAG 233 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~---v~~~~g~~i~a 233 (645)
...+.+.|.+ .+ ..++.+.++..++...+... +...++..+.+
T Consensus 181 --------------------------------~~~~~~~l~~-~g-i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 181 --------------------------------AEELAELLEK-YG-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 0012222222 22 23667888888887766544 57778889999
Q ss_pred cEEEEccCCchh
Q 006440 234 DLLIGADGIWSK 245 (645)
Q Consensus 234 ~lvVgADG~~S~ 245 (645)
|+++.+.|..-.
T Consensus 227 d~~~~~~g~~p~ 238 (415)
T COG0446 227 DLVIIGPGERPN 238 (415)
T ss_pred eEEEEeeccccc
Confidence 999999987653
No 314
>PRK14694 putative mercuric reductase; Provisional
Probab=96.67 E-value=0.017 Score=63.44 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=66.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||+|++|+.+|..|++.|.+|+++++.. ... ..+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l~--------------------~~~~~~---------------- 220 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VLS--------------------QEDPAV---------------- 220 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CCC--------------------CCCHHH----------------
Confidence 3589999999999999999999999999998631 100 000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
...+.+.|.+ .+ ..++.++++++++.+++.+.+.+.++ ++.+|.|
T Consensus 221 --------------------------------~~~l~~~l~~-~G-I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 265 (468)
T PRK14694 221 --------------------------------GEAIEAAFRR-EG-IEVLKQTQASEVDYNGREFILETNAG-TLRAEQL 265 (468)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEE
Confidence 0112222222 12 23677888999987766666666544 6999999
Q ss_pred EEccCCchhh
Q 006440 237 IGADGIWSKV 246 (645)
Q Consensus 237 VgADG~~S~v 246 (645)
|.|-|.....
T Consensus 266 i~a~G~~pn~ 275 (468)
T PRK14694 266 LVATGRTPNT 275 (468)
T ss_pred EEccCCCCCc
Confidence 9999987654
No 315
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.65 E-value=0.0023 Score=70.43 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=32.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34699999999999999999999999999999875
No 316
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.65 E-value=0.014 Score=64.38 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=66.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||||+.|+.+|..|++.|.+|+|+++. ...+ .++..+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~--------------------~~d~~~~---------------- 223 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR--------------------GFDQDCA---------------- 223 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc--------------------ccCHHHH----------------
Confidence 47999999999999999999999999999863 1110 0100000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCC---cEEecc
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGD 234 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~i~a~ 234 (645)
..+.+.|.+ .+ ..++.++.++.++..++.+.+++.++ +++.+|
T Consensus 224 --------------------------------~~l~~~L~~-~g-V~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D 269 (484)
T TIGR01438 224 --------------------------------NKVGEHMEE-HG-VKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYD 269 (484)
T ss_pred --------------------------------HHHHHHHHH-cC-CEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeC
Confidence 122333322 12 23677888888877666667777665 379999
Q ss_pred EEEEccCCchh
Q 006440 235 LLIGADGIWSK 245 (645)
Q Consensus 235 lvVgADG~~S~ 245 (645)
.||.|-|....
T Consensus 270 ~vl~a~G~~pn 280 (484)
T TIGR01438 270 TVLLAIGRDAC 280 (484)
T ss_pred EEEEEecCCcC
Confidence 99999997543
No 317
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.62 E-value=0.0025 Score=68.78 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=32.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..+|+|||+||+|+++|..|++.|+.|+++|+.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 47899999999999999999999999999998753
No 318
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.62 E-value=0.0029 Score=71.26 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=32.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+|||+||+|+++|..|++.|++|+++|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456899999999999999999999999999998753
No 319
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.59 E-value=0.011 Score=62.24 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=31.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (645)
+.+|+|||||.+|+.+|..|.++- .+|+++|++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 468999999999999999999985 8999999975
No 320
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.57 E-value=0.0019 Score=64.81 Aligned_cols=34 Identities=38% Similarity=0.587 Sum_probs=30.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+|||+|++||++|+.|+++ ++|+++|.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccc
Confidence 356899999999999999999988 8999999864
No 321
>PTZ00058 glutathione reductase; Provisional
Probab=96.55 E-value=0.025 Score=63.17 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4589999999999999999999999999999863
No 322
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.014 Score=58.42 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...|-|||||.||..+|+.++++|++|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 35689999999999999999999999999997653
No 323
>PRK14727 putative mercuric reductase; Provisional
Probab=96.54 E-value=0.023 Score=62.56 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=68.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccccccccc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~ 157 (645)
.+|+|||+|+.|+.+|..|++.|.+|+|+++.. ... .++..+.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~--------------------~~d~~~~---------------- 231 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLF--------------------REDPLLG---------------- 231 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCC--------------------cchHHHH----------------
Confidence 579999999999999999999999999998641 100 0000000
Q ss_pred ccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006440 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (645)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 237 (645)
..+.+.|.+ .+ ..++.++++++++.+++.+.+...++ ++.+|.||
T Consensus 232 --------------------------------~~l~~~L~~-~G-V~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~Vl 276 (479)
T PRK14727 232 --------------------------------ETLTACFEK-EG-IEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLL 276 (479)
T ss_pred --------------------------------HHHHHHHHh-CC-CEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEE
Confidence 012222222 12 23777889999987777777776665 58999999
Q ss_pred EccCCchhhh
Q 006440 238 GADGIWSKVR 247 (645)
Q Consensus 238 gADG~~S~vR 247 (645)
.|-|....+.
T Consensus 277 vA~G~~pn~~ 286 (479)
T PRK14727 277 ISTGRHANTH 286 (479)
T ss_pred EccCCCCCcc
Confidence 9999987653
No 324
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.52 E-value=0.02 Score=65.02 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|+|||||..|+.+|..|++.|.+|+++|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999864
No 325
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.51 E-value=0.028 Score=61.36 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+|+|||||++|+.+|..|++.|.+|+++++.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC
Confidence 357999999999999999999999999999875
No 326
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.50 E-value=0.017 Score=60.49 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=35.9
Q ss_pred eEEcCceEEEEEeeCCe-EEEEEcCCcEEeccEEEEccCCch
Q 006440 204 IILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S 244 (645)
.++++++|.+++..++. ..|.+++|+++.+|.||.|=|..+
T Consensus 189 ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 189 EIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred EEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 48899999999988875 457788999999999999999865
No 327
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=96.49 E-value=0.0085 Score=64.29 Aligned_cols=77 Identities=8% Similarity=0.153 Sum_probs=57.6
Q ss_pred CCCCeEeeccCCCCCEEEc-CCCCCCCCcceeeeCCCcccccceEEEEECCEEEEEECCCCcceeecCCCCceeecCCCC
Q 006440 541 VSQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNF 619 (645)
Q Consensus 541 ~~~~~~l~~~~~~~~~~iG-R~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~~~~~~l~~~~ 619 (645)
.+..+.|. .+ .++|| ++++|++ ++.|+.+|++|++|..+...+.+.| +..+.++|+. ++....
T Consensus 11 ~G~~~~L~-~g---~~~iG~~~~~~di-----~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~ 74 (410)
T TIGR02500 11 RGAELPLP-EG---NLVLGTDAADCDI-----VLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEE 74 (410)
T ss_pred CCcEEECC-CC---ceEeccCCCCcEE-----EeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCC
Confidence 44778888 77 79999 9999888 9999999999999999988888886 5777888883 222222
Q ss_pred cEEcCCCCEEEECC
Q 006440 620 PARFRPSDTIEFGS 633 (645)
Q Consensus 620 ~~~l~~gd~i~~g~ 633 (645)
...|..+..|..|.
T Consensus 75 g~~l~~~~~l~~g~ 88 (410)
T TIGR02500 75 GTPLPSGTPLLVAG 88 (410)
T ss_pred CCccCCCCceecce
Confidence 33455555555543
No 328
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.45 E-value=0.013 Score=61.95 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=30.5
Q ss_pred cCCceEEcCceEEEEEeeCCeEEEEEcCCc-EEeccEEEEccCCc
Q 006440 200 VGDEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGADGIW 243 (645)
Q Consensus 200 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~i~a~lvVgADG~~ 243 (645)
.+.. ++.++.|++++.+. |++++|+ +|.++.+|-|-|..
T Consensus 222 ~GV~-v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 222 LGVE-VLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCCE-EEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 3444 78899999997653 5667776 59999999999974
No 329
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.41 E-value=0.027 Score=61.05 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=28.9
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCch
Q 006440 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 244 (645)
.++.+++|+++.. + .|.+++|+++.+|+||.|-|...
T Consensus 244 ~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 244 DIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred EEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCC
Confidence 3677888888864 2 35678899999999999999643
No 330
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.39 E-value=0.015 Score=57.98 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=29.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.|+|||+|.|||+++..+-..|-.|+++|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccC
Confidence 69999999999999999998877799999975
No 331
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.017 Score=54.61 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=30.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+|+|||.|||+-.+|+.+++..++-+++|.-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 348999999999999999999999999999964
No 332
>PRK13748 putative mercuric reductase; Provisional
Probab=96.38 E-value=0.033 Score=62.84 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=67.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
..+|+|||||+.|+.+|..|++.|.+|+|+++... .. ..+..+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~-l~--------------------~~d~~~~--------------- 313 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL-FF--------------------REDPAIG--------------- 313 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc-cc--------------------ccCHHHH---------------
Confidence 35899999999999999999999999999997420 00 0000000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 236 (645)
..+.+.|.+ .+ ..++.++++++++.+++.+.+.+.++ ++.+|.|
T Consensus 314 ---------------------------------~~l~~~l~~-~g-I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 357 (561)
T PRK13748 314 ---------------------------------EAVTAAFRA-EG-IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKL 357 (561)
T ss_pred ---------------------------------HHHHHHHHH-CC-CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEE
Confidence 012223322 12 23777888999887666676766655 6999999
Q ss_pred EEccCCchhh
Q 006440 237 IGADGIWSKV 246 (645)
Q Consensus 237 VgADG~~S~v 246 (645)
|.|-|.....
T Consensus 358 i~a~G~~pn~ 367 (561)
T PRK13748 358 LVATGRAPNT 367 (561)
T ss_pred EEccCCCcCC
Confidence 9999987655
No 333
>PRK13984 putative oxidoreductase; Provisional
Probab=96.27 E-value=0.0052 Score=69.85 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=32.6
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45789999999999999999999999999999875
No 334
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.26 E-value=0.004 Score=69.37 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+..++|+||||+|.+|.++|..|+..|++|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3457999999999999999999999999999999874
No 335
>PLN03000 amine oxidase
Probab=96.22 E-value=0.0059 Score=70.25 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=32.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
...+|+|||||++|+.+|..|++.|++|+|+|++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 357999999999999999999999999999998653
No 336
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.13 E-value=0.0059 Score=63.20 Aligned_cols=35 Identities=37% Similarity=0.557 Sum_probs=30.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeE--EEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEV--LVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~--~~~~~~~ 110 (645)
...+|+|||||++||++|+.|++++-++ +|+|+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 3578999999999999999999998875 4599865
No 337
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.09 E-value=0.0047 Score=69.01 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~ 110 (645)
|+||||+|.+|+.+|..|++.| ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 338
>PLN02976 amine oxidase
Probab=96.04 E-value=0.0074 Score=72.05 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=31.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.++|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 4789999999999999999999999999999864
No 339
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.03 E-value=0.017 Score=65.44 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=60.8
Q ss_pred CEEEcCCCCCCCCcceeeeCCCcccccceEEEEECCE--EEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEEEC
Q 006440 555 PYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 632 (645)
Q Consensus 555 ~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~--~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g 632 (645)
...|||.+...-+ +|++....|--+||.|+-+++. +.|.-. --.-|||||+ .+. ++..|+.||+|.+|
T Consensus 478 ~TrVG~~~a~~~~--DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~qL~~GdRiilG 547 (1221)
T KOG0245|consen 478 ETRVGREDASSRQ--DIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQLRSGDRIILG 547 (1221)
T ss_pred ceecCCCCcccCC--ceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--CcceeccCCEEEEc
Confidence 8899999876543 4499999999999999998666 666643 3344999999 776 68999999999999
Q ss_pred CCceEEee
Q 006440 633 SDKKVMND 640 (645)
Q Consensus 633 ~~~~~~~~ 640 (645)
......|.
T Consensus 548 ~~H~frfn 555 (1221)
T KOG0245|consen 548 GNHVFRFN 555 (1221)
T ss_pred CceeEEec
Confidence 98666553
No 340
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.02 E-value=0.042 Score=61.11 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+|+|||||+.|+.+|..|++.|.+|+++++.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 358999999999999999999999999999865
No 341
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.98 E-value=0.0092 Score=62.78 Aligned_cols=34 Identities=35% Similarity=0.637 Sum_probs=29.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
..+|+|||||+||+++|..|-+.|+ .|+|+|...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 4589999999999999999997765 799999754
No 342
>PLN02546 glutathione reductase
Probab=95.96 E-value=0.068 Score=59.74 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3589999999999999999999999999999753
No 343
>PLN02785 Protein HOTHEAD
Probab=95.94 E-value=0.0094 Score=66.95 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+||||||.+|+.+|..|++ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 346999999999999999999999 69999999975
No 344
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.011 Score=60.37 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=31.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAI 113 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~ 113 (645)
...|+|||+||||+.+|..|.++ ++.|.|+|+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34899999999999999988874 78999999987653
No 345
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.22 Score=50.26 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+||.+|||||-+||+||-..+..|.+|.++|--.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 357999999999999999999999999999999643
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.013 Score=67.09 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=33.1
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...++|+|||.||+||++|-.|-+.||-|+|+||..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 345799999999999999999999999999999975
No 347
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.67 E-value=0.039 Score=57.11 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCccccCCCCcccceeeCchHHH--HHHhcChhHHHHHHHhccc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALA--ALEAIDLDVAEEVMRAGCV 150 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~--~l~~l~~g~~~~~~~~~~~ 150 (645)
++..+|++.||-||.-|.+|+.|..++ +++..+||.+......| ..+....+. .|+.| .....+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-----mllegstlQv~FlkDL--------VTl~~P 68 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-----MLLEGSTLQVPFLKDL--------VTLVDP 68 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-----cccCCccccccchhhh--------ccccCC
Confidence 456789999999999999999999986 78999999876654443 222222221 12222 111000
Q ss_pred c-ccccccccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCC-ceEEcCceEEEEEeeC-Ce-EE--EE
Q 006440 151 T-GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHG-DK-VS--VV 224 (645)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~-~~-v~--v~ 224 (645)
. ...+..+.... ++ ...|-. -....+.|.++.+.+.-.++. ..++++.+|++|..-+ +. .. +.
T Consensus 69 Ts~ySFLNYL~~h-~R-Ly~Fl~---------~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~ 137 (436)
T COG3486 69 TSPYSFLNYLHEH-GR-LYEFLN---------YETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVV 137 (436)
T ss_pred CCchHHHHHHHHc-ch-Hhhhhh---------hhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEE
Confidence 0 00000000000 00 000100 002467788888887655432 3478899999774322 22 22 44
Q ss_pred EcCCcEEeccEEEEccCCchhhhh
Q 006440 225 LENGQCYAGDLLIGADGIWSKVRK 248 (645)
Q Consensus 225 ~~~g~~i~a~lvVgADG~~S~vR~ 248 (645)
..++..++|+-||..-|..-.+-.
T Consensus 138 t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 138 TANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred cCCCcEEEeeeEEEccCCCcCCCh
Confidence 556678899988888887654443
No 348
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.66 E-value=0.0063 Score=64.65 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=34.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCcc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (645)
..++||+|||||-+|.-||+-.+-+|++|.++|++...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 44699999999999999999999999999999998643
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.48 E-value=0.1 Score=55.16 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
...|+++|+|..|+.+|-.|...+++|+++++.+.+.. ++ +...+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~--------------------~l---f~~~i------------ 257 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP--------------------RL---FGPSI------------ 257 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh--------------------hh---hhHHH------------
Confidence 45699999999999999999999999999998643211 00 00000
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCC--eEEEEEcCCcEEecc
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD--KVSVVLENGQCYAGD 234 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~--~v~v~~~~g~~i~a~ 234 (645)
+..+..+|.+. + ..+..++.+.+++.+.+ ...|.+.||+++.||
T Consensus 258 --------------------------------~~~~~~y~e~k-g-Vk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 258 --------------------------------GQFYEDYYENK-G-VKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred --------------------------------HHHHHHHHHhc-C-eEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 11222333221 2 23677888888887663 356889999999999
Q ss_pred EEEEccCCchh
Q 006440 235 LLIGADGIWSK 245 (645)
Q Consensus 235 lvVgADG~~S~ 245 (645)
+||..-|+.+.
T Consensus 304 lvv~GiG~~p~ 314 (478)
T KOG1336|consen 304 LVVVGIGIKPN 314 (478)
T ss_pred eEEEeeccccc
Confidence 99999998653
No 350
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.47 E-value=0.04 Score=61.14 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=29.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..-+|||||.-|+.+|..|...|++|++++-.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~ 177 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeec
Confidence 34799999999999999999999999999854
No 351
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.39 E-value=0.14 Score=52.34 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 358999999999999999999999999999975
No 352
>PRK10262 thioredoxin reductase; Provisional
Probab=95.36 E-value=0.16 Score=52.76 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4589999999999999999999999999999863
No 353
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.24 E-value=0.057 Score=57.16 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCEEEcCCCCCCCCcceeeeCC--CcccccceEEEEE-CCEEEEEECCCCcceeecCCCCceeecCCCCcEEcCCCCEEE
Q 006440 554 EPYLIGSESHEDFSRTSIVIPS--AQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 630 (645)
Q Consensus 554 ~~~~iGR~~~~~~~~~~~~~~~--~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~ 630 (645)
+++++||+...-..++++-... .-|||+.|.|... +|.|+|..+|- --.||||. +|.+|+.+.|+..-+|+
T Consensus 448 ~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK-~~I~vng~-----~l~~gq~~~L~~nclve 521 (547)
T KOG2293|consen 448 KEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGK-RSILVNGG-----ELDRGQKVILKNNCLVE 521 (547)
T ss_pred cceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcc-eeEEeCCc-----cccCCceEEeccCcEEE
Confidence 4899999998665577666644 4599999999987 78899999865 55999999 99999999999999999
Q ss_pred ECCCceEEee
Q 006440 631 FGSDKKVMND 640 (645)
Q Consensus 631 ~g~~~~~~~~ 640 (645)
|-.- .+.|+
T Consensus 522 Irg~-~FiF~ 530 (547)
T KOG2293|consen 522 IRGL-RFIFE 530 (547)
T ss_pred Eccc-eEEEe
Confidence 9766 44453
No 354
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.17 E-value=0.048 Score=61.14 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=80.3
Q ss_pred hcCCcEEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCcccccceEEEEECCEEEEEECCCCccee
Q 006440 525 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTY 604 (645)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~ 604 (645)
.+....+++....+....+.|.|. .+ ..-+|.....+ .+|.+..+.|-.+||.|..-+|.+.|+-+.--.-||
T Consensus 353 ~~~lPvLve~s~dG~~s~~ri~L~-~~---vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~ 425 (1629)
T KOG1892|consen 353 PEKLPVLVELSPDGSDSRKRIRLQ-LS---VTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETY 425 (1629)
T ss_pred cccCcEEEEEcCCCCCcceeEEec-cC---ceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhh
Confidence 344556666655555555788888 66 78888877653 456899999999999999999999999875555699
Q ss_pred ecCCCCceeecCCCCcEEcCCCCEEEECCCceEEee
Q 006440 605 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKVMND 640 (645)
Q Consensus 605 vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~ 640 (645)
|||. +|. +...|+.|+.|+||......|.
T Consensus 426 VnGh-----~is--qttiL~~G~~v~fGa~hsfkF~ 454 (1629)
T KOG1892|consen 426 VNGH-----RIS--QTTILQSGMKVQFGASHSFKFV 454 (1629)
T ss_pred ccce-----ecc--hhhhhccCCEEEeccceeEEec
Confidence 9999 887 5678999999999988666663
No 355
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.03 E-value=0.028 Score=51.68 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|+|||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999863
No 356
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.96 E-value=0.056 Score=59.32 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=67.9
Q ss_pred EEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCcccccceEEEEE--CCEEEEEECCCCcceeecC
Q 006440 530 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTD 607 (645)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~--~~~~~i~D~~S~nGt~vn~ 607 (645)
.+|++..+. ...|+|. .. .++|||++.. .|.|..+||+..++.-+ .+.+.+.-||. |-+-|||
T Consensus 15 c~l~~~~~~---~~~~~~~-~~---~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~-np~~~~~ 79 (526)
T TIGR01663 15 CTLKPGEAE---HHFIHLD-AG---ALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLGV-NPCGTGG 79 (526)
T ss_pred eEecCCCCC---CCeeccC-CC---ceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEccC-CCcccCc
Confidence 445554433 2556666 44 7999999996 56799999999999877 66788888865 9999999
Q ss_pred CCCceeecCCCCcEEcCCCCEEEECCC
Q 006440 608 NEGRRYRVSSNFPARFRPSDTIEFGSD 634 (645)
Q Consensus 608 ~~~~~~~l~~~~~~~l~~gd~i~~g~~ 634 (645)
. .|.++....|++||.+.+=.+
T Consensus 80 ~-----~~~~~~~~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 80 L-----ELKPGGEGELGHGDLLEIVNG 101 (526)
T ss_pred e-----EecCCCeeeecCCCEEEEecc
Confidence 9 999999999999999988655
No 357
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.92 E-value=0.032 Score=52.59 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999864
No 358
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.92 E-value=0.17 Score=56.29 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=31.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||..|+.+|..|+..|.+|+++++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 3589999999999999999999999999998763
No 359
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=94.73 E-value=0.0081 Score=56.08 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
..||+|||+|-+||++|+..+++ .++|.|||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 46999999999999999999865 689999998643
No 360
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.72 E-value=0.033 Score=52.74 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=26.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
++|.|+|.|-+|+.+|..||++|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 369999999999999999999999999999875
No 361
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=94.66 E-value=0.15 Score=52.30 Aligned_cols=101 Identities=26% Similarity=0.259 Sum_probs=70.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccccccc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 156 (645)
+...+|||||..||.++..-.+.|-+|+++|--+. ++..+-.++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~------------------------i~~~mD~Ei------------ 254 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ------------------------IGGVMDGEI------------ 254 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh------------------------hccccCHHH------------
Confidence 45799999999999999999999999999995421 110000011
Q ss_pred cccccCCCceeeeccCCCchhhcCCCeEEeeCHHHHHHHHHHHcCCceEEcCceEEEEEeeCC-eEEEEEcC---C--cE
Q 006440 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--QC 230 (645)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~---g--~~ 230 (645)
...+++.|.+ ....++.+++|++.+.+++ .+.|++.+ + ++
T Consensus 255 --------------------------------sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~t 300 (506)
T KOG1335|consen 255 --------------------------------SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKET 300 (506)
T ss_pred --------------------------------HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeE
Confidence 1134444443 2234788999999998887 57777654 2 47
Q ss_pred EeccEEEEccCCchhhh
Q 006440 231 YAGDLLIGADGIWSKVR 247 (645)
Q Consensus 231 i~a~lvVgADG~~S~vR 247 (645)
++||.+..|-|++-.+-
T Consensus 301 le~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 301 LECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeEEEEEccCccccc
Confidence 99999999999875443
No 362
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.62 E-value=0.032 Score=55.63 Aligned_cols=37 Identities=38% Similarity=0.572 Sum_probs=30.6
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeccCc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~-g~-~~~~~~~~~~ 111 (645)
..+++|+|||||-+|+..|..+.++ |- +|.|+|....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4578999999999999999998876 43 6899997643
No 363
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.58 E-value=0.32 Score=51.48 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred eEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCch
Q 006440 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 244 (645)
.++.++++++++.+ .+.+.+|+++.+|+||.|-|...
T Consensus 207 ~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 207 EVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred EEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence 36677888877532 46677888999999999999754
No 364
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.42 E-value=0.28 Score=51.67 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=29.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCe-EEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFE-VLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~ 109 (645)
..|+|||+|+.|+.+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999997 9999975
No 365
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.053 Score=53.08 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=41.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCccccC-CC--CcccceeeCchHHHHHHhcC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EG--QYRGPIQIQSNALAALEAID 137 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g--~~~~~~~l~~~~~~~l~~l~ 137 (645)
++++|||+|..|..+|..|.+.|+.|+++|+++..... .. .....+.....-...|+++|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~ag 63 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAG 63 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcC
Confidence 36999999999999999999999999999997644222 11 00112334445556676663
No 366
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.17 E-value=0.045 Score=57.20 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=38.2
Q ss_pred eEEcCceEEEEEeeCCe-EEEEEcCCcEEeccEEEEccCCchhhhhhh
Q 006440 204 IILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lvVgADG~~S~vR~~l 250 (645)
.|+..++|.+|..+++. +-|.++||++++++.||-=.+.+-+.-+.+
T Consensus 280 eI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 280 EIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred eeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 37788899998877655 459999999999999998888877776655
No 367
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.02 E-value=0.13 Score=53.18 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.3
Q ss_pred EEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCC--chhhh
Q 006440 205 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI--WSKVR 247 (645)
Q Consensus 205 i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~--~S~vR 247 (645)
++.+..|.++......+.+.+.||.+++.|+||.|-|- ||-+.
T Consensus 410 V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 410 VRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred eccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhc
Confidence 55667777777777778899999999999999999995 44443
No 368
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.93 E-value=1.4 Score=48.67 Aligned_cols=34 Identities=44% Similarity=0.624 Sum_probs=32.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+||+|||||++||++|..|+++|++|+|+|++..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5899999999999999999999999999999754
No 369
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.89 E-value=1.1 Score=48.15 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHcCCceEEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhhh
Q 006440 197 AKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 247 (645)
Q Consensus 197 ~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR 247 (645)
.+..+. .|+++++|++|+.+++++.|++.+|++++||.||.|-......+
T Consensus 219 ~~~~g~-~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 219 AEELGG-EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HHHHGG-GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred HhhcCc-eeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 333344 48999999999999999999999999999999998887765554
No 370
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.84 E-value=0.095 Score=47.70 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=29.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
|+|+|+|-.|+..|..|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999863
No 371
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.81 E-value=0.08 Score=58.44 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999763
No 372
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.75 E-value=0.071 Score=58.46 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|+|||.|++|+++|..|+++|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999864
No 373
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.74 E-value=0.56 Score=51.39 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (645)
..+|+|||||..|+-+|..|++.|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4589999999999999999999998 89999975
No 374
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.67 E-value=0.084 Score=58.07 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.5
Q ss_pred CCCcCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeccCcc
Q 006440 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 112 (645)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~~ 112 (645)
....||.||||||-||+.+|-.|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999986 7899999997644
No 375
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.53 E-value=0.11 Score=53.72 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||+|-.|..+|..|++.|++|+++.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4579999999999999999999999999999863
No 376
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.35 E-value=0.093 Score=54.17 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999874
No 377
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.05 E-value=0.13 Score=52.35 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998753
No 378
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.00 E-value=0.11 Score=55.62 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.3
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..++||+|+|-|+.-..+|.+|++.|.+|+.+|+++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 457999999999999999999999999999999975
No 379
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.00 E-value=10 Score=42.06 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
|+|||||++||++|..|++.|++|+|+|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 68999999999999999999999999999754
No 380
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.82 E-value=0.15 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.74 E-value=0.18 Score=46.24 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=30.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEec
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (645)
....|+|||||.+|...|..|.+.|.+|+|+.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457899999999999999999999999999953
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.16 Score=51.92 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|..+|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 383
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.59 E-value=0.14 Score=53.10 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
++|.|+|.|-+||+.|..|++.||+|+++|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998754
No 384
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.43 E-value=0.19 Score=55.02 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=31.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999863
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.43 E-value=0.17 Score=52.08 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
++|+|+|+|..|...|..|++.|++|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 57999999999999999999999999999986
No 386
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.38 E-value=0.2 Score=51.64 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 387
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=92.34 E-value=0.046 Score=57.83 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=36.4
Q ss_pred eeeccCCCccccCCcccccccccccCcccccccccCCccccccccccccC
Q 006440 16 VFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAE 65 (645)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (645)
.+.-..|++|+.+++.++++||++|++|...........|. +||..++
T Consensus 322 ~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~~~~~~~~~~~C~--vNp~~g~ 369 (370)
T cd02929 322 SIADPFLPKKIREGRIDDIRECIGCNICISGDEGGVPMRCT--QNPTAGE 369 (370)
T ss_pred hhhCchHHHHHHcCCccccccCCchhhhhccccCCCCceec--cCccccC
Confidence 34456789999999999999999999976655444445666 8887664
No 388
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.10 E-value=0.17 Score=51.71 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999874
No 389
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.05 E-value=0.59 Score=52.05 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=45.5
Q ss_pred EeeCHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEE-EEEc---CC--cEEeccEEEEccCCchhh
Q 006440 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSKV 246 (645)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~i~a~lvVgADG~~S~v 246 (645)
..++-..|...|.+.+. ...++.+++|++++.+++.+. |++. +| .+++|+.||-|.|.+|.-
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 36788888887766552 234788999999998777643 4442 34 379999999999999863
No 390
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.97 E-value=0.19 Score=51.70 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEec
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (645)
+|+|+|+|..|..+|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999997
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=91.96 E-value=0.15 Score=50.58 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=29.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeccCcc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKG-------FEVLVFEKDMSA 112 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g-------~~~~~~~~~~~~ 112 (645)
..+|+|||+|..||++|+.+.+.+ .+|++++-+..+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 468999999999999999988854 578888765433
No 392
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.81 E-value=0.26 Score=47.41 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
...|+|||||.+|..-+..|.+.|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 458999999999999999999999999999864
No 393
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.76 E-value=0.23 Score=50.86 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 394
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.76 E-value=0.22 Score=51.24 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=29.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
+|+|||+|-.|..+|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999985
No 395
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.74 E-value=0.16 Score=42.93 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=30.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
....|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999876
No 396
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.66 E-value=0.27 Score=47.17 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
...+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35689999999999999999999999 699999873
No 397
>PRK07233 hypothetical protein; Provisional
Probab=91.66 E-value=12 Score=40.25 Aligned_cols=33 Identities=45% Similarity=0.754 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|+|||||++||++|+.|+++|++|+|+|++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 589999999999999999999999999999763
No 398
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.62 E-value=0.2 Score=44.72 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
++|+|+|+.+.++|..++..|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998754
No 399
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.48 E-value=0.24 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 400
>PLN02612 phytoene desaturase
Probab=91.41 E-value=6.4 Score=44.36 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=39.7
Q ss_pred HHHHHHHHc---CCceEEcCceEEEEEeeCCe--EEEEEcCCcEEeccEEEEccCCchhhhhh
Q 006440 192 LQQILAKAV---GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKN 249 (645)
Q Consensus 192 l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvVgADG~~S~vR~~ 249 (645)
|.+.|.+.+ +. .|+++++|++|+.++++ +.+.+.+|++++||.||.|... ...++.
T Consensus 310 l~~~l~~~l~~~G~-~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~L 370 (567)
T PLN02612 310 LCMPIVDHFQSLGG-EVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLL 370 (567)
T ss_pred HHHHHHHHHHhcCC-EEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHh
Confidence 445555543 33 48899999999986555 3477788989999999999865 344443
No 401
>PRK04148 hypothetical protein; Provisional
Probab=91.35 E-value=0.24 Score=43.81 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 579999999 99999999999999999999764
No 402
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.33 E-value=0.32 Score=46.73 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
....|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3568999999999999999999999999999753
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.27 E-value=0.25 Score=53.24 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+|.|||.|-.|+.+|..|+++|++|+.+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998653
No 404
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.19 E-value=0.35 Score=45.01 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=29.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|+|.+|..+|..|...|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999763
No 405
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.11 E-value=0.32 Score=43.35 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=31.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~~ 111 (645)
+.+|+|+|+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3579999999999999999999999 6999998753
No 406
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.88 E-value=0.36 Score=48.34 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=31.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
....|+|+|+|-+|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999996 799999764
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.74 E-value=0.34 Score=49.97 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=29.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
+|.|||+|.+|.++|+.|+++|+ .+.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 69999999999999999999994 899999864
No 408
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.64 E-value=0.33 Score=50.92 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=30.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
.+|.|||+|..|...|..|+++|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999975
No 409
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.59 E-value=1.8 Score=52.16 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (645)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 3589999999999999999999996 57899865
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.58 E-value=0.37 Score=49.84 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|..+|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999764
No 411
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.37 E-value=0.43 Score=41.09 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.6
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
|+|+|.|..|..+|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999998753
No 412
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.32 E-value=0.54 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (645)
....|+|+|+|-+|.+++..|+..|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 356899999999999999999999997 99998863
No 413
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.30 E-value=1.3 Score=46.43 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=26.0
Q ss_pred EEcCceEEEEEeeCCeEEEEEcCC--cEEeccEEEEccCCc
Q 006440 205 ILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIW 243 (645)
Q Consensus 205 i~~~~~v~~i~~~~~~v~v~~~~g--~~i~a~lvVgADG~~ 243 (645)
+..++.|..++. ..+.+...|| ++|.+-++|.|.|..
T Consensus 290 ~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 290 LDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred eecccEEEeecC--cEEEEEcCCCceeeecceEEEecCCCC
Confidence 666777777753 3455555566 468899999999974
No 414
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.28 E-value=0.39 Score=49.18 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 415
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.17 E-value=1.7 Score=47.75 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=27.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (645)
..+|+|||||..|+-+|..+.+.|. +|++++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 4589999999999999999889886 68866643
No 416
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.99 E-value=0.51 Score=43.77 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCcCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGI-GGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~-~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
-...+|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3467899999995 7999999999999999999975
No 417
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.97 E-value=0.59 Score=42.06 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=29.5
Q ss_pred CcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 78 LRILVAGG-GIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~-g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
.+|.|||+ |.+|.++|+.|...++ ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999977 699999864
No 418
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.92 E-value=1 Score=47.91 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=32.1
Q ss_pred EEcCceEEEEEeeCCeEEEEEcCCcEEeccEEEEccCCchhh
Q 006440 205 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 246 (645)
Q Consensus 205 i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 246 (645)
+++++.|+.++.... +|.+.+|+++.++.+|.|.|. |+.
T Consensus 144 ~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 144 LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS-SAK 182 (478)
T ss_pred EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC-ccc
Confidence 667899999876554 578899999999999999999 443
No 419
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.84 E-value=0.43 Score=49.69 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||+|-.|.++|..|++.|++|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999853
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.81 E-value=0.44 Score=48.98 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (645)
.+|.|||+|.+|..+|..|+.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999987 89999974
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.63 E-value=0.36 Score=52.03 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998653
No 422
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.50 E-value=0.53 Score=49.03 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999863
No 423
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.50 E-value=0.62 Score=48.24 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~~ 111 (645)
...+|+|||+|-+|..+|+.|+..|+ ++.|+|..+.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 34689999999999999999999997 8999998643
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.44 E-value=0.47 Score=50.65 Aligned_cols=34 Identities=32% Similarity=0.240 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999763
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.41 E-value=0.51 Score=49.22 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999999 899999874
No 426
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.40 E-value=0.45 Score=45.47 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...+|+|||+|.++.-+|..|++.|-+|+++-|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35789999999999999999999999999998864
No 427
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.33 E-value=0.58 Score=48.30 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|.|||+|-.|.++|..|++.|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 428
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.28 E-value=0.42 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||++|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999863
No 429
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.27 E-value=0.67 Score=51.53 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
-...+|+|||+|.+|.=.|..|++..-+|.+.-|..
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 345789999999999999999999999999988764
No 430
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.24 E-value=0.47 Score=51.84 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3589999999999999999999999999999864
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.24 E-value=0.53 Score=49.80 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=31.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|+|+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999863
No 432
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.98 E-value=0.47 Score=52.01 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=31.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999999999999999999999865
No 433
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.93 E-value=0.72 Score=47.65 Aligned_cols=35 Identities=20% Similarity=0.481 Sum_probs=31.2
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
...+|.|||+|-+|.++|+.|+..|+ ++.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34689999999999999999999998 799999853
No 434
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.78 E-value=0.54 Score=47.73 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=29.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||.|..|.++|..|+++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999863
No 435
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=88.72 E-value=0.65 Score=46.07 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.4
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
....++|+|+|+.+..+|..++..|++|+++|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999997654
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.66 E-value=0.68 Score=44.48 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=31.7
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
....|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35689999999999999999999998 799999864
No 437
>PRK12831 putative oxidoreductase; Provisional
Probab=88.47 E-value=0.55 Score=51.46 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999763
No 438
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.38 E-value=0.7 Score=43.24 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (645)
+|+|||+|-.|...|..|++.|+. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999864
No 439
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.34 E-value=1.1 Score=50.78 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=73.5
Q ss_pred hcCCcEEEEecCCCCCCCCCeEeeccCCCCCEEEcCCCCCCCCcceeeeCCCcccccceEEEEE-CCEEEEEECCCCcce
Q 006440 525 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGT 603 (645)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~-~~~~~i~D~~S~nGt 603 (645)
+.+..++++.....+.......+.+.+ ..+||-..+-++ ++..-.+-++||.|..+ ++.+++.-+.++ -+
T Consensus 441 v~dDK~ylvnlnadP~lnellvyyl~~---~tlig~~~~~~i-----~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~ 511 (1714)
T KOG0241|consen 441 VGDDKCYLVNLNADPALNELLVYYLKD---HTLIGLFKSQDI-----QLSGLGIQPKHCVIDIESDGELRLTPLLNA-RS 511 (1714)
T ss_pred ccccceEEEeccCCccHHHHHHHhhcC---ceeeccccCcce-----eeecCcccCccceeeeccCCcEEecccccc-ee
Confidence 556677777777666554444444344 688886666655 88899999999999987 566888887665 79
Q ss_pred eecCCCCceeecCCCCcEEcCCCCEEEECCCceE
Q 006440 604 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKV 637 (645)
Q Consensus 604 ~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~ 637 (645)
||||. .+. .+..|..||+|..|....+
T Consensus 512 ~VNGs-----~v~--~~t~L~~GdRiLwGnnHFF 538 (1714)
T KOG0241|consen 512 CVNGS-----LVC--STTQLWHGDRILWGNNHFF 538 (1714)
T ss_pred eecCc-----eec--cccccccCceEEecccceE
Confidence 99998 665 5688999999999988544
No 440
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.22 E-value=0.71 Score=48.19 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999999 899999864
No 441
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.10 E-value=0.68 Score=48.09 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||+|..|..+|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 442
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.08 E-value=0.8 Score=41.21 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 699999864
No 443
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.06 E-value=0.57 Score=44.63 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=32.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
....|.|||+|..|.-.|...+..|+.|+++|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346899999999999999999999999999998743
No 444
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.03 E-value=21 Score=39.37 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcC--CceEEcCceEEEEEeeCCeE-EEEEcCC-----cEEeccEEEEccCCchh
Q 006440 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG-----QCYAGDLLIGADGIWSK 245 (645)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v-~v~~~~g-----~~i~a~lvVgADG~~S~ 245 (645)
..|-+.|.+.+. ...|+.+++|++|..+++.+ .+.+.++ +++.||.||.+-..+..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~ 295 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL 295 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHH
Confidence 346666666652 23589999999998877653 2444443 57899999988776533
No 445
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.77 E-value=0.76 Score=42.43 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||-|-.|...|..|.++|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999875
No 446
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.69 E-value=0.72 Score=50.99 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 447
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.64 E-value=0.84 Score=45.13 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=30.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4689999999999999999999998 689999864
No 448
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.55 E-value=0.81 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.1
Q ss_pred cEEEEc-CCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g-~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.||| +|..|.++|..|++.|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998753
No 449
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=87.51 E-value=0.75 Score=48.55 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHcC--CceEEcCceEEEEEeeCCeEEEEEcCC-cEEeccEEEEccCCch
Q 006440 188 SRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWS 244 (645)
Q Consensus 188 ~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~i~a~lvVgADG~~S 244 (645)
.-..+..+|..++. ...++++++|++| +++++.+.+.++ ..++||-||.|.|..|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 34566677766652 2358899999999 334577776543 5799999999999976
No 450
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.39 E-value=0.77 Score=50.79 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 451
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=87.37 E-value=12 Score=40.07 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred eEEcCceEEEEEeeCCeEEEEE-cCCcEEeccEEEEccCCch
Q 006440 204 IILNESNVIDFKDHGDKVSVVL-ENGQCYAGDLLIGADGIWS 244 (645)
Q Consensus 204 ~i~~~~~v~~i~~~~~~v~v~~-~~g~~i~a~lvVgADG~~S 244 (645)
.|+++++|++|+.+++++.+.. .+|+++.||.||.|.-...
T Consensus 213 ~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 213 EVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred EEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 5889999999999888876554 3677899999999876554
No 452
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.34 E-value=0.65 Score=51.22 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 453
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.33 E-value=0.85 Score=47.03 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
.+|.|||+|..|..+|..|+..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999853
No 454
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.26 E-value=0.92 Score=43.94 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.5
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (645)
....|+|||+|-.|..+|..|++.|+. ++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356899999999999999999999995 99999864
No 455
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.20 E-value=0.41 Score=42.10 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
....+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34679999999999999999999999998877643
No 456
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.12 E-value=0.84 Score=47.01 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=29.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHCC--CeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (645)
+|+|||+|-+|.++|..|+..| .++.++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999864
No 457
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.00 E-value=0.78 Score=50.11 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=30.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (645)
++|.|||.|-+|+.+|..|+++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 478999998653
No 458
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.00 E-value=1.1 Score=42.93 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
....|+|+|.|-.|..+|..|.+.|++|+++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3457999999999999999999999999999865
No 459
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.92 E-value=0.97 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5689999999999999999999998 799999864
No 460
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.85 E-value=0.87 Score=47.93 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~ 111 (645)
.+|+|+|+|-+|..+|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999743
No 461
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.83 E-value=0.97 Score=46.59 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
.+|.|||+|..|.++|..|++.|+ +|+++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 899999763
No 462
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.79 E-value=0.79 Score=48.80 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|.|||.|-.|+.+|..|+. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 59999999999999988885 999999998754
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.54 E-value=1 Score=44.14 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
..+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999999 799999764
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.46 E-value=1.1 Score=47.79 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=31.9
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....|+|+|.|++|..+|..|+..|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 34689999999999999999999999999999765
No 465
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.04 E-value=1.1 Score=49.00 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=30.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3469999999999999999999999999999753
No 466
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.00 E-value=0.74 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=26.2
Q ss_pred CcEEEEccccCcCCCCCcchhhHHHHHHHHHHHHH
Q 006440 363 GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 397 (645)
Q Consensus 363 ~rvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 397 (645)
+|+.++||..|..++ .|++-|+.++...|+.|
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 599999998776655 69999999999988876
No 467
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.00 E-value=1.2 Score=43.78 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=31.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
...|+|+|+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 799999764
No 468
>PRK08328 hypothetical protein; Provisional
Probab=85.86 E-value=1.2 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999999 588998764
No 469
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.80 E-value=1.2 Score=45.57 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|+|.|.+|..+|..|++.|.+|+++++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5689999999999999999999999999999874
No 470
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.77 E-value=1.3 Score=45.76 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=30.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (645)
..+|.|||+|-+|.++|+.|+..|+ ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999987 689999753
No 471
>PLN02976 amine oxidase
Probab=85.77 E-value=53 Score=40.86 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCceEEcCceEEEEEee----------CCeEEEEEcCCcEEeccEEEEccC
Q 006440 190 MTLQQILAKAVGDEIILNESNVIDFKDH----------GDKVSVVLENGQCYAGDLLIGADG 241 (645)
Q Consensus 190 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~----------~~~v~v~~~~g~~i~a~lvVgADG 241 (645)
..|.+.|.+.+. |++++.|+.|... +++|.|++.+|+++.||.||.+==
T Consensus 936 qqLIeALAe~L~---IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVP 994 (1713)
T PLN02976 936 SNVVESLAEGLD---IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVP 994 (1713)
T ss_pred HHHHHHHHhhCC---eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCC
Confidence 345566666553 8889999999874 467899999999999999998754
No 472
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=85.73 E-value=1.2 Score=45.35 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (645)
..+|+|+|+|-+|.++|..|++.|. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 79999986
No 473
>PLN02576 protoporphyrinogen oxidase
Probab=85.64 E-value=35 Score=37.62 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCceEEcCceEEEEEeeCCe-EEEEEc--CC-cEEeccEEEEccC
Q 006440 191 TLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLE--NG-QCYAGDLLIGADG 241 (645)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~--~g-~~i~a~lvVgADG 241 (645)
.|-+.|.+.++...|+++++|+.|+.++++ +.|++. +| +++.||.||.|-=
T Consensus 240 ~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P 294 (496)
T PLN02576 240 TLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAP 294 (496)
T ss_pred HHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCC
Confidence 566777777763458899999999988776 666654 45 3699999999863
No 474
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.62 E-value=0.98 Score=46.45 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=29.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|+|+|-.|...|+.|++.|..|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999998888887753
No 475
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.41 E-value=1.3 Score=45.87 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~ 110 (645)
..+|+|||+|-+|.++|+.|+..| ..+.|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999999 5899999864
No 476
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.36 E-value=1.1 Score=49.20 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+|+|+|.|.+|+++|..|++.|++|++.|+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.33 E-value=1.4 Score=48.16 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=30.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|.|.+|+++|..|+++|++|+++|...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3479999999999999999999999999999753
No 478
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.32 E-value=1.3 Score=42.38 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=30.8
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
...|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4689999999999999999999999 599999764
No 479
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=1.3 Score=45.43 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=33.1
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
.+||+|+|-|+.=+.++..|+..|.+|+.+|+++.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~ 40 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDY 40 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCc
Confidence 69999999999999999999999999999999853
No 480
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.06 E-value=1.1 Score=46.09 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.3
Q ss_pred EEEEcCCHHHHHHHHHHHHCCC-eEEEEeccC
Q 006440 80 ILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (645)
|.|||+|-+|..+|..|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999863
No 481
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=85.06 E-value=1.7 Score=46.17 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.7
Q ss_pred CcCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~-g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.+.+|+|.|| |..|..++..|.++|++|+++++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 4568999999 9999999999999999999999753
No 482
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.02 E-value=1 Score=52.10 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
..|.|||+|..|...|..+++.|++|+++|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998743
No 483
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.93 E-value=1.5 Score=41.77 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.8
Q ss_pred cCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEecc
Q 006440 77 KLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~-g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..+++|+|| |.+|..+|..|++.|.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999997 999999999999999999999875
No 484
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.90 E-value=3.3 Score=45.96 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=30.3
Q ss_pred CcCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~-g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....|+|.|| |-.|..++..|+++|++|+++.|+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3456899997 8999999999999999999998763
No 485
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.89 E-value=1.3 Score=43.28 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=30.2
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCe---EEEEecc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFE---VLVFEKD 109 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~---~~~~~~~ 109 (645)
..+|+|+|+|-+|...|..|.+.|.+ ++++++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45799999999999999999999985 9999986
No 486
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.87 E-value=1 Score=50.76 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+.+|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 56899999999999999999999999999998753
No 487
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.80 E-value=1.4 Score=43.51 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=30.3
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCC-----------CeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKG-----------FEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g-----------~~~~~~~~~~ 110 (645)
...+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999974 3889999764
No 488
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.66 E-value=2.3 Score=34.49 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.0
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEec
Q 006440 77 KLRILVAGGGIGGLVFALAAKRK-GFEVLVFEK 108 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~ 108 (645)
..+++|+|+|-+|..+|..|.+. +.++.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45799999999999999999998 678999998
No 489
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.63 E-value=1.4 Score=47.27 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=31.8
Q ss_pred CcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
....|+|+|.|..|..+|..|+..|.+|+++|.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 34679999999999999999999999999999864
No 490
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.58 E-value=1.1 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
-..|.|||+|..|...|..++.+|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998743
No 491
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=84.50 E-value=1.1 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeccCc
Q 006440 78 LRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~ 111 (645)
.++-|||+|+|+|++|..|-|- |-+|+|+|+...
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 5688999999999999999885 668999998653
No 492
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.49 E-value=1.5 Score=41.95 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=30.9
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (645)
..+|+|||+|-.|..+|..|++.|+. ++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999999999999999999995 99999764
No 493
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.43 E-value=1.1 Score=45.78 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=29.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999864
No 494
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.36 E-value=1.5 Score=44.72 Aligned_cols=35 Identities=37% Similarity=0.486 Sum_probs=32.5
Q ss_pred CCcCcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
...+|.+|||||-.|++.|...+..|.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 34799999999999999999999999999999964
No 495
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.36 E-value=1.3 Score=48.46 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
..+|+|+|+|++|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 496
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.34 E-value=1.3 Score=48.83 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHCCCeEEEEecc
Q 006440 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (645)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (645)
..|+|+|.|..|++++..|.++|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999964
No 497
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.30 E-value=1.2 Score=48.79 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHCCCeEEEEeccCc
Q 006440 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (645)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (645)
+|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998653
No 498
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=84.28 E-value=0.78 Score=44.84 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=24.0
Q ss_pred EEEEcCCHHHHHHHHHHHHC--CCeEEEEecc
Q 006440 80 ILVAGGGIGGLVFALAAKRK--GFEVLVFEKD 109 (645)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~ 109 (645)
.+|||||+||.+||-.|+.. .-+++|+-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 58999999999999999986 4456666543
No 499
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.24 E-value=0.89 Score=45.61 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.5
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
.-+|+|+|||.+|..+|..+...|-+|+|+|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999874
No 500
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.18 E-value=1.5 Score=44.56 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.4
Q ss_pred cCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeccC
Q 006440 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (645)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (645)
...|+|+|.|-+|.++|..|+..|.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
Done!