Query 006442
Match_columns 645
No_of_seqs 479 out of 4729
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 01:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 4.2E-77 1.4E-81 731.4 46.7 207 419-631 1071-1305(1321)
2 2iw3_A Elongation factor 3A; a 100.0 2.8E-76 9.7E-81 690.7 45.6 428 97-624 435-982 (986)
3 1yqt_A RNAse L inhibitor; ATP- 100.0 5.8E-76 2E-80 660.8 33.7 432 98-630 21-493 (538)
4 3g5u_A MCG1178, multidrug resi 100.0 4.1E-74 1.4E-78 703.4 49.9 203 422-630 1028-1258(1284)
5 3bk7_A ABC transporter ATP-bin 100.0 5.1E-75 1.7E-79 659.7 34.7 433 97-630 83-563 (607)
6 3ozx_A RNAse L inhibitor; ATP 100.0 8.2E-71 2.8E-75 617.6 33.2 420 102-615 4-461 (538)
7 3j16_B RLI1P; ribosome recycli 100.0 3.6E-69 1.2E-73 610.7 32.7 452 102-631 82-560 (608)
8 3ux8_A Excinuclease ABC, A sub 100.0 7.5E-67 2.6E-71 603.7 32.9 429 109-628 30-638 (670)
9 2vf7_A UVRA2, excinuclease ABC 100.0 7.8E-51 2.7E-55 472.4 28.5 337 233-630 354-827 (842)
10 3pih_A Uvrabc system protein A 100.0 1.3E-49 4.4E-54 465.7 34.3 334 239-630 444-902 (916)
11 2r6f_A Excinuclease ABC subuni 100.0 1.6E-49 5.4E-54 461.4 29.0 336 234-629 480-941 (972)
12 2ygr_A Uvrabc system protein A 100.0 3.8E-49 1.3E-53 459.9 29.6 337 234-630 497-960 (993)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-47 1E-51 404.0 24.3 208 97-345 4-227 (359)
14 3tui_C Methionine import ATP-b 100.0 7E-47 2.4E-51 401.3 26.8 210 94-344 21-251 (366)
15 2pcj_A ABC transporter, lipopr 100.0 1E-46 3.4E-51 377.9 24.7 199 96-335 3-218 (224)
16 2olj_A Amino acid ABC transpor 100.0 2.1E-46 7.2E-51 383.7 26.5 210 95-344 22-246 (263)
17 3rlf_A Maltose/maltodextrin im 100.0 1.3E-46 4.5E-51 401.7 26.0 208 97-345 3-222 (381)
18 3gfo_A Cobalt import ATP-bindi 100.0 8.8E-47 3E-51 388.7 23.0 209 96-345 6-232 (275)
19 1b0u_A Histidine permease; ABC 100.0 2.8E-46 9.6E-51 383.2 26.2 208 97-344 6-240 (262)
20 3tif_A Uncharacterized ABC tra 100.0 1.9E-46 6.5E-51 378.5 23.2 202 97-335 1-224 (235)
21 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-46 1.9E-50 379.2 26.3 209 95-344 13-233 (256)
22 4g1u_C Hemin import ATP-bindin 100.0 1.2E-45 3.9E-50 379.2 25.7 205 96-343 10-234 (266)
23 1ji0_A ABC transporter; ATP bi 100.0 7.7E-46 2.6E-50 375.3 24.0 206 96-343 5-225 (240)
24 1z47_A CYSA, putative ABC-tran 100.0 7.4E-46 2.5E-50 393.5 24.9 210 95-345 12-234 (355)
25 1g6h_A High-affinity branched- 100.0 3.2E-46 1.1E-50 381.9 21.0 218 96-343 6-239 (257)
26 3gfo_A Cobalt import ATP-bindi 100.0 1.8E-45 6.3E-50 378.9 25.2 206 422-630 5-233 (275)
27 2it1_A 362AA long hypothetical 100.0 1.4E-45 4.8E-50 392.7 25.1 208 97-345 3-222 (362)
28 2yyz_A Sugar ABC transporter, 100.0 1.2E-45 4.2E-50 392.7 23.2 207 97-344 3-221 (359)
29 3tui_C Methionine import ATP-b 100.0 4.2E-45 1.4E-49 387.7 27.1 207 419-629 19-252 (366)
30 1g29_1 MALK, maltose transport 100.0 3.1E-45 1.1E-49 392.0 26.4 208 97-345 3-228 (372)
31 1v43_A Sugar-binding transport 100.0 2.5E-45 8.5E-50 392.1 24.3 208 97-345 11-230 (372)
32 1b0u_A Histidine permease; ABC 100.0 5E-45 1.7E-49 373.9 25.5 204 423-630 5-242 (262)
33 2olj_A Amino acid ABC transpor 100.0 6.3E-45 2.1E-49 372.8 26.0 203 424-630 24-248 (263)
34 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-45 6.1E-50 391.6 22.6 208 97-345 3-229 (353)
35 3fvq_A Fe(3+) IONS import ATP- 100.0 6.3E-45 2.2E-49 386.2 26.4 203 424-630 4-228 (359)
36 3d31_A Sulfate/molybdate ABC t 100.0 5.9E-45 2E-49 386.2 25.0 203 97-344 1-215 (348)
37 4g1u_C Hemin import ATP-bindin 100.0 1.3E-44 4.5E-49 371.3 25.7 204 422-629 9-236 (266)
38 2pcj_A ABC transporter, lipopr 100.0 1.9E-44 6.5E-49 361.3 26.2 194 423-620 3-219 (224)
39 2nq2_C Hypothetical ABC transp 100.0 9.7E-45 3.3E-49 369.8 24.3 206 97-343 4-214 (253)
40 2ihy_A ABC transporter, ATP-bi 100.0 3.7E-45 1.3E-49 377.8 21.1 212 95-343 19-249 (279)
41 3tif_A Uncharacterized ABC tra 100.0 1.4E-44 4.9E-49 364.8 24.8 195 424-621 1-226 (235)
42 1ji0_A ABC transporter; ATP bi 100.0 1.9E-44 6.4E-49 365.2 25.0 204 422-629 4-227 (240)
43 3rlf_A Maltose/maltodextrin im 100.0 2.1E-44 7.3E-49 384.6 26.0 202 424-629 3-222 (381)
44 2onk_A Molybdate/tungstate ABC 100.0 9E-45 3.1E-49 367.0 22.0 201 98-344 2-214 (240)
45 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-44 3.9E-49 374.2 22.3 207 421-629 18-251 (279)
46 1g6h_A High-affinity branched- 100.0 1.5E-44 5E-49 369.6 23.0 202 422-627 5-239 (257)
47 1z47_A CYSA, putative ABC-tran 100.0 4.3E-44 1.5E-48 379.9 27.4 208 419-630 9-235 (355)
48 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-44 1.3E-48 365.8 25.2 205 422-630 13-235 (256)
49 2yz2_A Putative ABC transporte 100.0 1.6E-44 5.5E-49 371.0 22.2 206 97-343 2-224 (266)
50 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-44 4.4E-49 368.5 20.5 209 97-342 3-229 (250)
51 2yyz_A Sugar ABC transporter, 100.0 1E-43 3.5E-48 378.0 26.9 203 424-630 3-223 (359)
52 2zu0_C Probable ATP-dependent 100.0 7.5E-44 2.6E-48 366.2 24.8 215 96-343 19-251 (267)
53 2it1_A 362AA long hypothetical 100.0 1.1E-43 3.8E-48 378.0 25.4 203 424-630 3-223 (362)
54 2onk_A Molybdate/tungstate ABC 100.0 1.5E-43 5.1E-48 358.1 24.4 200 424-630 1-216 (240)
55 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-43 4.7E-48 375.8 25.1 201 424-629 1-216 (348)
56 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-43 4.7E-48 377.1 24.8 203 424-630 3-230 (353)
57 1g29_1 MALK, maltose transport 100.0 2.3E-43 8E-48 377.5 26.7 203 424-630 3-229 (372)
58 1v43_A Sugar-binding transport 100.0 2.1E-43 7.1E-48 377.3 25.6 203 424-630 11-231 (372)
59 3nh6_A ATP-binding cassette SU 100.0 2.5E-43 8.6E-48 367.7 24.9 205 422-631 51-278 (306)
60 1sgw_A Putative ABC transporte 100.0 1.9E-44 6.7E-49 358.0 15.1 191 95-329 8-206 (214)
61 2yz2_A Putative ABC transporte 100.0 3.3E-43 1.1E-47 361.3 24.8 205 424-630 2-227 (266)
62 2ixe_A Antigen peptide transpo 100.0 4.8E-43 1.6E-47 360.8 25.2 210 96-344 15-243 (271)
63 3nh6_A ATP-binding cassette SU 100.0 5.3E-43 1.8E-47 365.2 25.6 212 96-345 52-276 (306)
64 2ff7_A Alpha-hemolysin translo 100.0 2.6E-43 8.9E-48 358.1 21.0 208 97-344 7-230 (247)
65 2pjz_A Hypothetical protein ST 100.0 6.8E-43 2.3E-47 357.7 24.0 199 424-629 1-214 (263)
66 2pjz_A Hypothetical protein ST 100.0 3.9E-43 1.3E-47 359.5 21.8 197 97-341 1-210 (263)
67 2nq2_C Hypothetical ABC transp 100.0 1.1E-42 3.6E-47 354.7 24.4 197 424-628 4-215 (253)
68 2pze_A Cystic fibrosis transme 100.0 1.2E-42 4E-47 349.5 24.1 206 96-344 5-216 (229)
69 2qi9_C Vitamin B12 import ATP- 100.0 3.9E-43 1.3E-47 356.8 20.6 196 97-343 4-219 (249)
70 2ff7_A Alpha-hemolysin translo 100.0 1.3E-42 4.5E-47 352.9 24.1 201 424-630 7-232 (247)
71 2d2e_A SUFC protein; ABC-ATPas 100.0 8.6E-43 2.9E-47 355.1 22.7 200 424-626 3-229 (250)
72 2zu0_C Probable ATP-dependent 100.0 1.1E-42 3.8E-47 357.4 23.5 206 422-630 18-254 (267)
73 2cbz_A Multidrug resistance-as 100.0 8.5E-43 2.9E-47 352.2 19.3 202 97-344 3-215 (237)
74 2ixe_A Antigen peptide transpo 100.0 2.4E-42 8.2E-47 355.6 22.8 203 422-630 14-245 (271)
75 1mv5_A LMRA, multidrug resista 100.0 5E-43 1.7E-47 355.4 17.0 201 97-344 1-224 (243)
76 1mv5_A LMRA, multidrug resista 100.0 2E-42 6.7E-47 351.0 19.5 201 424-630 1-226 (243)
77 2qi9_C Vitamin B12 import ATP- 100.0 7.1E-42 2.4E-46 347.5 23.1 197 424-629 4-221 (249)
78 2ghi_A Transport protein; mult 100.0 7.6E-42 2.6E-46 349.9 21.4 210 97-345 17-241 (260)
79 1sgw_A Putative ABC transporte 100.0 2E-42 6.9E-47 343.5 15.5 191 422-618 8-210 (214)
80 2pze_A Cystic fibrosis transme 100.0 4.9E-41 1.7E-45 337.7 24.3 199 423-630 5-218 (229)
81 2ghi_A Transport protein; mult 100.0 2.9E-41 9.8E-46 345.6 22.5 202 423-630 16-242 (260)
82 3gd7_A Fusion complex of cysti 100.0 1.1E-41 3.8E-46 366.1 18.3 199 96-345 18-241 (390)
83 1tf7_A KAIC; homohexamer, hexa 100.0 4.6E-44 1.6E-48 402.2 -1.1 381 97-617 12-444 (525)
84 2cbz_A Multidrug resistance-as 100.0 2.6E-41 9E-46 341.3 19.2 198 424-630 3-217 (237)
85 3gd7_A Fusion complex of cysti 100.0 1.1E-40 3.9E-45 358.3 20.6 205 418-630 13-242 (390)
86 2bbs_A Cystic fibrosis transme 100.0 6E-40 2E-44 340.3 19.6 203 96-344 39-245 (290)
87 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-39 5.9E-44 369.1 24.7 213 96-346 340-566 (587)
88 3b5x_A Lipid A export ATP-bind 100.0 6.8E-39 2.3E-43 364.4 28.0 203 422-630 339-567 (582)
89 3b60_A Lipid A export ATP-bind 100.0 7.2E-39 2.4E-43 364.2 28.1 204 422-631 339-568 (582)
90 3qf4_B Uncharacterized ABC tra 100.0 3.3E-39 1.1E-43 367.8 25.1 203 422-630 352-578 (598)
91 4a82_A Cystic fibrosis transme 100.0 1.2E-39 4.1E-44 370.1 21.3 212 96-345 338-563 (578)
92 3qf4_A ABC transporter, ATP-bi 100.0 6.1E-39 2.1E-43 364.6 26.9 205 422-631 339-567 (587)
93 3b5x_A Lipid A export ATP-bind 100.0 3.6E-39 1.2E-43 366.6 24.6 213 96-345 340-566 (582)
94 4a82_A Cystic fibrosis transme 100.0 7.5E-39 2.6E-43 363.6 26.6 204 422-631 337-565 (578)
95 3qf4_B Uncharacterized ABC tra 100.0 2.4E-39 8.3E-44 368.9 21.9 212 96-345 353-577 (598)
96 3b60_A Lipid A export ATP-bind 100.0 4.3E-39 1.5E-43 366.0 23.0 213 96-345 340-566 (582)
97 2yl4_A ATP-binding cassette SU 100.0 9.1E-39 3.1E-43 364.2 22.9 214 96-344 339-568 (595)
98 2yl4_A ATP-binding cassette SU 100.0 1.3E-38 4.3E-43 363.0 23.8 202 423-630 339-570 (595)
99 2bbs_A Cystic fibrosis transme 100.0 1.7E-38 5.7E-43 329.5 20.7 196 423-630 39-247 (290)
100 1yqt_A RNAse L inhibitor; ATP- 100.0 3E-37 1E-41 346.5 21.2 200 95-343 285-490 (538)
101 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-37 1.6E-41 344.3 21.1 192 95-332 267-462 (538)
102 3bk7_A ABC transporter ATP-bin 100.0 4.5E-37 1.5E-41 348.7 20.4 200 95-343 355-560 (607)
103 4f4c_A Multidrug resistance pr 100.0 1.3E-36 4.5E-41 373.1 25.5 203 422-629 413-640 (1321)
104 3g5u_A MCG1178, multidrug resi 100.0 3.4E-36 1.2E-40 368.5 23.3 204 422-630 385-613 (1284)
105 2iw3_A Elongation factor 3A; a 100.0 6.7E-35 2.3E-39 341.7 24.9 197 424-630 435-635 (986)
106 3j16_B RLI1P; ribosome recycli 100.0 7.5E-35 2.6E-39 329.9 19.8 197 101-345 350-558 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 6.4E-32 2.2E-36 311.9 17.7 192 436-629 30-297 (670)
108 4aby_A DNA repair protein RECN 100.0 3.8E-28 1.3E-32 264.7 20.7 223 111-336 49-379 (415)
109 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.9E-32 1E-36 299.6 -12.2 193 95-341 116-333 (460)
110 2vf7_A UVRA2, excinuclease ABC 100.0 2.4E-28 8.1E-33 284.0 19.9 237 95-344 500-825 (842)
111 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-31 5.4E-36 293.8 -10.0 194 422-628 116-336 (460)
112 3pih_A Uvrabc system protein A 100.0 1.5E-27 5E-32 279.5 20.7 106 237-344 783-900 (916)
113 2r6f_A Excinuclease ABC subuni 99.9 6.7E-28 2.3E-32 280.5 16.9 106 238-345 824-941 (972)
114 4aby_A DNA repair protein RECN 99.9 2.3E-27 8E-32 258.5 17.5 76 544-620 296-379 (415)
115 2ygr_A Uvrabc system protein A 99.9 1.4E-27 4.8E-32 278.8 16.2 106 238-345 842-959 (993)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8.3E-26 2.8E-30 242.2 16.3 81 253-334 273-362 (365)
117 3b85_A Phosphate starvation-in 99.9 3.7E-28 1.3E-32 240.1 -9.2 145 106-321 9-163 (208)
118 1e69_A Chromosome segregation 99.9 2.2E-25 7.5E-30 235.1 9.2 90 252-342 212-309 (322)
119 4gp7_A Metallophosphoesterase; 99.9 1.1E-25 3.9E-30 215.4 4.8 145 115-322 1-165 (171)
120 1ye8_A Protein THEP1, hypothet 99.9 3.9E-25 1.3E-29 213.2 6.3 135 125-325 2-152 (178)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-23 4E-28 225.4 18.0 82 538-620 274-364 (365)
122 3b85_A Phosphate starvation-in 99.9 1.3E-26 4.5E-31 229.0 -5.4 146 432-605 8-163 (208)
123 4gp7_A Metallophosphoesterase; 99.9 3.6E-25 1.2E-29 211.9 4.0 149 442-610 1-168 (171)
124 1e69_A Chromosome segregation 99.9 1.2E-23 4.1E-28 221.8 14.7 90 537-627 213-310 (322)
125 1ye8_A Protein THEP1, hypothet 99.9 4.8E-24 1.6E-28 205.5 5.5 147 452-630 2-170 (178)
126 1tq4_A IIGP1, interferon-induc 99.9 4.5E-26 1.5E-30 246.4 -12.6 171 110-332 36-254 (413)
127 1tq4_A IIGP1, interferon-induc 99.9 3.3E-25 1.1E-29 239.6 -9.7 171 437-616 36-254 (413)
128 3b9q_A Chloroplast SRP recepto 99.9 7.2E-24 2.5E-28 221.0 -0.5 173 107-334 84-284 (302)
129 2v9p_A Replication protein E1; 99.9 1.7E-26 5.9E-31 240.0 -21.1 163 97-344 101-264 (305)
130 3qkt_A DNA double-strand break 99.9 4.9E-21 1.7E-25 203.2 19.5 79 251-330 240-327 (339)
131 2v9p_A Replication protein E1; 99.9 1.5E-25 5.2E-30 232.9 -16.7 163 424-628 101-264 (305)
132 2og2_A Putative signal recogni 99.8 7.6E-23 2.6E-27 217.4 0.7 165 114-333 148-340 (359)
133 2o5v_A DNA replication and rep 99.8 1.5E-20 5E-25 200.1 17.3 83 254-341 259-351 (359)
134 1znw_A Guanylate kinase, GMP k 99.8 1.8E-24 6E-29 213.5 -12.1 174 110-330 9-202 (207)
135 4ad8_A DNA repair protein RECN 99.8 2.5E-20 8.6E-25 208.7 19.0 77 255-332 392-473 (517)
136 3b9q_A Chloroplast SRP recepto 99.8 1.4E-22 4.6E-27 211.4 -1.0 167 441-619 91-285 (302)
137 3aez_A Pantothenate kinase; tr 99.8 3.7E-24 1.3E-28 224.2 -13.6 180 97-333 43-246 (312)
138 2dpy_A FLII, flagellum-specifi 99.8 9.2E-23 3.1E-27 222.9 -3.9 172 96-334 130-333 (438)
139 1z6g_A Guanylate kinase; struc 99.8 5.6E-24 1.9E-28 211.8 -15.2 168 111-327 11-205 (218)
140 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.4E-22 8.4E-27 212.2 -4.6 139 427-618 151-292 (330)
141 3qkt_A DNA double-strand break 99.8 1.5E-19 5.2E-24 191.7 16.4 81 537-618 242-333 (339)
142 2og2_A Putative signal recogni 99.8 1.5E-21 5E-26 207.5 -0.4 166 442-619 149-342 (359)
143 2o8b_B DNA mismatch repair pro 99.8 4.1E-21 1.4E-25 228.8 3.3 164 95-335 748-930 (1022)
144 1znw_A Guanylate kinase, GMP k 99.8 1.1E-22 3.8E-27 200.5 -9.1 162 437-614 9-202 (207)
145 2pt7_A CAG-ALFA; ATPase, prote 99.8 7.3E-22 2.5E-26 208.5 -3.7 141 100-333 151-291 (330)
146 2o5v_A DNA replication and rep 99.8 3.3E-19 1.1E-23 189.7 15.8 85 538-627 259-353 (359)
147 3sop_A Neuronal-specific septi 99.8 4.7E-22 1.6E-26 204.2 -6.0 143 125-319 4-153 (270)
148 1z6g_A Guanylate kinase; struc 99.8 1.5E-22 5.1E-27 201.5 -9.9 157 438-611 11-205 (218)
149 2dpy_A FLII, flagellum-specifi 99.8 6.4E-22 2.2E-26 216.3 -5.9 175 423-620 130-335 (438)
150 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-20 4.1E-25 211.8 4.1 169 97-333 257-444 (525)
151 3aez_A Pantothenate kinase; tr 99.8 2E-22 6.9E-27 211.0 -11.3 175 423-616 42-245 (312)
152 2o8b_B DNA mismatch repair pro 99.8 4.1E-20 1.4E-24 220.2 5.5 165 421-619 747-930 (1022)
153 2obl_A ESCN; ATPase, hydrolase 99.8 6.2E-21 2.1E-25 202.4 -1.6 173 96-334 44-244 (347)
154 2obl_A ESCN; ATPase, hydrolase 99.8 2.3E-20 7.9E-25 198.1 -0.0 182 423-620 44-246 (347)
155 1cr0_A DNA primase/helicase; R 99.8 2.1E-19 7.2E-24 186.7 7.0 177 438-618 23-237 (296)
156 1ewq_A DNA mismatch repair pro 99.8 9.3E-20 3.2E-24 211.0 4.3 144 96-320 549-702 (765)
157 2jeo_A Uridine-cytidine kinase 99.8 4E-20 1.4E-24 187.1 0.4 166 108-326 10-176 (245)
158 3sop_A Neuronal-specific septi 99.8 8.9E-21 3.1E-25 194.6 -4.8 140 452-603 4-153 (270)
159 1cr0_A DNA primase/helicase; R 99.8 1.1E-19 3.7E-24 189.0 3.1 180 110-333 22-236 (296)
160 2eyu_A Twitching motility prot 99.8 1.9E-20 6.6E-25 191.2 -3.5 141 98-331 6-147 (261)
161 2eyu_A Twitching motility prot 99.8 5.1E-20 1.7E-24 188.1 -0.9 139 425-613 6-145 (261)
162 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.5E-18 8.6E-23 160.2 10.3 81 253-334 51-142 (148)
163 1w1w_A Structural maintenance 99.7 6.8E-18 2.3E-22 184.7 15.5 75 255-330 329-410 (430)
164 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.2E-18 1.1E-22 159.5 10.9 81 537-618 51-142 (148)
165 3auy_A DNA double-strand break 99.7 3.9E-17 1.3E-21 175.3 18.4 75 255-330 276-359 (371)
166 2i3b_A HCR-ntpase, human cance 99.7 1.9E-19 6.7E-24 174.8 0.2 134 123-324 1-159 (189)
167 2i3b_A HCR-ntpase, human cance 99.7 2.8E-20 9.7E-25 180.8 -6.0 154 450-632 1-180 (189)
168 4a74_A DNA repair and recombin 99.7 5.1E-19 1.7E-23 176.0 2.3 72 261-332 101-200 (231)
169 3thx_A DNA mismatch repair pro 99.7 6.2E-18 2.1E-22 199.2 11.8 156 422-620 629-804 (934)
170 2qnr_A Septin-2, protein NEDD5 99.7 5.9E-20 2E-24 191.6 -6.2 158 101-317 2-168 (301)
171 2ehv_A Hypothetical protein PH 99.7 4.9E-19 1.7E-23 178.3 0.6 71 261-331 119-207 (251)
172 3thx_A DNA mismatch repair pro 99.7 8.4E-18 2.9E-22 198.0 10.6 152 97-334 631-802 (934)
173 2jeo_A Uridine-cytidine kinase 99.7 6.2E-19 2.1E-23 178.3 0.9 161 435-617 10-180 (245)
174 1w1w_A Structural maintenance 99.7 3.3E-17 1.1E-21 179.3 14.2 75 539-614 329-410 (430)
175 3thx_B DNA mismatch repair pro 99.7 2.5E-18 8.6E-23 201.9 4.8 147 97-319 640-799 (918)
176 2ehv_A Hypothetical protein PH 99.7 1.1E-17 3.8E-22 168.3 8.6 179 424-614 6-206 (251)
177 1ewq_A DNA mismatch repair pro 99.7 8.8E-18 3E-22 194.5 6.0 143 424-604 550-702 (765)
178 4a74_A DNA repair and recombin 99.7 5.7E-17 1.9E-21 161.1 10.9 158 426-616 3-200 (231)
179 2qnr_A Septin-2, protein NEDD5 99.7 2.3E-19 7.9E-24 187.1 -6.9 158 428-601 2-168 (301)
180 3asz_A Uridine kinase; cytidin 99.7 6.6E-20 2.3E-24 180.6 -10.5 143 120-317 3-162 (211)
181 3thx_B DNA mismatch repair pro 99.7 2.1E-17 7.1E-22 194.2 8.7 152 424-609 640-804 (918)
182 1rj9_A FTSY, signal recognitio 99.7 8.7E-18 3E-22 175.1 1.9 141 122-317 101-259 (304)
183 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.4E-16 8.1E-21 156.5 9.6 166 437-616 9-192 (235)
184 2w0m_A SSO2452; RECA, SSPF, un 99.6 2E-16 7E-21 157.0 9.0 167 110-332 9-192 (235)
185 3asz_A Uridine kinase; cytidin 99.6 1.6E-18 5.5E-23 170.6 -7.8 142 447-601 3-162 (211)
186 3szr_A Interferon-induced GTP- 99.6 1.6E-18 5.4E-23 197.3 -10.2 152 97-318 10-198 (608)
187 1pui_A ENGB, probable GTP-bind 99.6 1.1E-16 3.8E-21 156.7 3.5 159 424-589 3-196 (210)
188 1pui_A ENGB, probable GTP-bind 99.6 1.1E-17 3.8E-22 163.8 -3.9 180 97-303 3-194 (210)
189 1wb9_A DNA mismatch repair pro 99.6 6.1E-17 2.1E-21 188.6 1.4 157 97-331 577-744 (800)
190 3kta_B Chromosome segregation 99.6 4.1E-15 1.4E-19 142.0 13.5 95 537-632 58-160 (173)
191 3jvv_A Twitching mobility prot 99.6 1.2E-16 4.1E-21 170.0 2.9 139 101-332 92-246 (356)
192 3kta_B Chromosome segregation 99.6 4.2E-15 1.4E-19 141.9 13.2 92 253-345 58-157 (173)
193 2qag_C Septin-7; cell cycle, c 99.6 1.9E-17 6.4E-22 179.5 -3.8 159 96-317 10-178 (418)
194 1nlf_A Regulatory protein REPA 99.6 1.2E-15 4.1E-20 157.1 9.0 146 120-320 27-185 (279)
195 3jvv_A Twitching mobility prot 99.6 1.8E-16 6.2E-21 168.6 2.5 125 446-614 119-244 (356)
196 1rj9_A FTSY, signal recognitio 99.6 2.4E-16 8.1E-21 164.3 0.8 158 449-618 101-285 (304)
197 1pzn_A RAD51, DNA repair and r 99.6 4.1E-16 1.4E-20 165.8 2.2 155 111-333 118-303 (349)
198 1nlf_A Regulatory protein REPA 99.6 7.6E-15 2.6E-19 151.1 10.8 144 446-604 26-185 (279)
199 3szr_A Interferon-induced GTP- 99.5 4.2E-16 1.4E-20 177.4 -0.8 169 424-619 10-227 (608)
200 2cvh_A DNA repair and recombin 99.5 3.1E-14 1.1E-18 140.2 12.0 148 439-616 8-185 (220)
201 1wb9_A DNA mismatch repair pro 99.5 1.3E-15 4.3E-20 177.5 1.4 160 424-618 577-747 (800)
202 1pzn_A RAD51, DNA repair and r 99.5 3E-15 1E-19 159.2 4.0 150 440-618 120-304 (349)
203 2cvh_A DNA repair and recombin 99.5 4.3E-14 1.5E-18 139.2 11.9 75 258-332 83-185 (220)
204 4ad8_A DNA repair protein RECN 99.5 1.4E-14 5E-19 162.0 9.4 78 538-616 391-473 (517)
205 2qag_C Septin-7; cell cycle, c 99.5 6.1E-16 2.1E-20 167.7 -3.1 157 423-602 10-179 (418)
206 1s96_A Guanylate kinase, GMP k 99.5 1.5E-15 5.2E-20 150.8 -0.4 127 118-321 11-145 (219)
207 2ewv_A Twitching motility prot 99.5 5.2E-15 1.8E-19 158.6 1.4 123 112-329 127-256 (372)
208 1lw7_A Transcriptional regulat 99.5 2.9E-17 1E-21 175.8 -17.4 164 112-328 157-340 (365)
209 1zp6_A Hypothetical protein AT 99.5 6.9E-16 2.3E-20 149.1 -6.3 132 119-304 5-146 (191)
210 1zp6_A Hypothetical protein AT 99.5 2.3E-15 7.9E-20 145.4 -2.9 149 446-610 5-169 (191)
211 2gza_A Type IV secretion syste 99.4 5.8E-15 2E-19 157.7 -0.3 144 99-333 137-303 (361)
212 2qag_B Septin-6, protein NEDD5 99.4 1.1E-14 3.9E-19 157.2 0.6 178 98-316 17-219 (427)
213 2ewv_A Twitching motility prot 99.4 1.5E-14 5E-19 155.1 1.1 127 438-610 126-253 (372)
214 1htw_A HI0065; nucleotide-bind 99.4 1.1E-15 3.6E-20 144.1 -7.0 82 100-183 10-96 (158)
215 1lw7_A Transcriptional regulat 99.4 1.9E-15 6.5E-20 161.8 -6.4 165 439-614 157-342 (365)
216 1n0w_A DNA repair protein RAD5 99.4 2.2E-12 7.6E-17 128.8 13.6 144 446-616 20-209 (243)
217 3auy_A DNA double-strand break 99.4 6.5E-13 2.2E-17 142.4 9.9 75 539-614 276-359 (371)
218 2rcn_A Probable GTPase ENGC; Y 99.4 1.1E-13 3.8E-18 146.5 3.7 116 112-274 205-328 (358)
219 2bbw_A Adenylate kinase 4, AK4 99.4 2.6E-14 9E-19 144.2 -1.7 132 449-590 26-197 (246)
220 2bdt_A BH3686; alpha-beta prot 99.4 4.4E-16 1.5E-20 150.5 -14.2 161 123-340 2-178 (189)
221 2bdt_A BH3686; alpha-beta prot 99.4 2.5E-16 8.5E-21 152.3 -16.8 164 450-627 2-181 (189)
222 2yhs_A FTSY, cell division pro 99.3 5E-14 1.7E-18 154.1 -1.5 147 113-314 283-447 (503)
223 1n0w_A DNA repair protein RAD5 99.3 4.6E-12 1.6E-16 126.6 12.8 31 119-149 20-52 (243)
224 3e70_C DPA, signal recognition 99.3 1E-13 3.5E-18 145.8 0.7 155 120-333 126-305 (328)
225 2bbw_A Adenylate kinase 4, AK4 99.3 5.5E-15 1.9E-19 149.2 -8.8 143 122-304 26-195 (246)
226 2gza_A Type IV secretion syste 99.3 4.9E-14 1.7E-18 150.5 -2.3 153 426-617 137-303 (361)
227 1s96_A Guanylate kinase, GMP k 99.3 2E-13 6.9E-18 135.5 1.6 128 444-605 10-145 (219)
228 1udx_A The GTP-binding protein 99.3 3.6E-13 1.2E-17 145.8 2.1 146 113-314 147-306 (416)
229 1htw_A HI0065; nucleotide-bind 99.3 2.3E-14 7.8E-19 135.0 -6.7 83 427-513 10-97 (158)
230 2qm8_A GTPase/ATPase; G protei 99.3 3.7E-15 1.3E-19 157.7 -14.3 78 97-174 29-120 (337)
231 1p9r_A General secretion pathw 99.3 1.1E-14 3.9E-19 157.8 -10.8 136 424-566 143-314 (418)
232 1nij_A Hypothetical protein YJ 99.3 8.6E-15 3E-19 153.7 -12.2 56 258-322 140-195 (318)
233 1nij_A Hypothetical protein YJ 99.3 1.9E-14 6.5E-19 151.1 -10.9 140 451-603 5-192 (318)
234 2oap_1 GSPE-2, type II secreti 99.3 2.5E-14 8.6E-19 159.0 -10.6 184 111-324 248-458 (511)
235 3e70_C DPA, signal recognition 99.3 6.9E-13 2.4E-17 139.4 0.9 157 447-619 126-307 (328)
236 2qag_B Septin-6, protein NEDD5 99.3 2.6E-13 8.9E-18 146.5 -2.5 167 425-600 17-219 (427)
237 2oap_1 GSPE-2, type II secreti 99.2 3.2E-14 1.1E-18 158.2 -12.3 161 437-609 247-459 (511)
238 2qm8_A GTPase/ATPase; G protei 99.2 1.3E-13 4.5E-18 145.8 -7.0 157 425-589 30-258 (337)
239 3ec2_A DNA replication protein 99.2 1.8E-12 6.1E-17 124.1 1.4 109 444-601 32-144 (180)
240 3ec2_A DNA replication protein 99.2 1.3E-12 4.3E-17 125.1 0.3 42 275-316 98-143 (180)
241 1p9r_A General secretion pathw 99.2 1.6E-14 5.5E-19 156.6 -14.6 60 98-159 144-203 (418)
242 1ls1_A Signal recognition part 99.2 9.7E-13 3.3E-17 136.5 -0.6 126 441-597 91-219 (295)
243 3lda_A DNA repair protein RAD5 99.2 5.9E-11 2E-15 127.9 13.3 142 446-616 174-363 (400)
244 2f1r_A Molybdopterin-guanine d 99.2 9.6E-14 3.3E-18 132.4 -8.0 36 124-159 3-41 (171)
245 2kjq_A DNAA-related protein; s 99.2 1.1E-11 3.7E-16 115.4 6.1 89 439-599 30-124 (149)
246 2yv5_A YJEQ protein; hydrolase 99.2 1.4E-12 4.9E-17 135.7 -0.6 122 119-272 161-300 (302)
247 1sxj_E Activator 1 40 kDa subu 99.2 2E-11 6.9E-16 129.2 7.9 136 126-327 39-186 (354)
248 1udx_A The GTP-binding protein 99.2 4.1E-12 1.4E-16 137.5 2.3 147 440-604 147-313 (416)
249 2yhs_A FTSY, cell division pro 99.2 3E-12 1E-16 140.1 0.2 166 440-618 283-476 (503)
250 3lda_A DNA repair protein RAD5 99.2 1.4E-10 4.7E-15 125.0 12.6 34 119-152 174-209 (400)
251 1lvg_A Guanylate kinase, GMP k 99.1 2E-14 6.8E-19 140.5 -16.3 151 448-615 2-173 (198)
252 1odf_A YGR205W, hypothetical 3 99.1 1.3E-12 4.6E-17 135.0 -3.7 136 121-294 29-169 (290)
253 1sq5_A Pantothenate kinase; P- 99.1 1.5E-13 5.2E-18 143.5 -11.0 83 97-182 37-149 (308)
254 2f1r_A Molybdopterin-guanine d 99.1 2.4E-13 8.2E-18 129.6 -9.1 129 451-587 3-157 (171)
255 1sxj_E Activator 1 40 kDa subu 99.1 8.3E-11 2.8E-15 124.5 8.6 128 452-602 38-176 (354)
256 3c8u_A Fructokinase; YP_612366 99.1 4.9E-13 1.7E-17 131.4 -8.6 43 120-171 19-61 (208)
257 2rcn_A Probable GTPase ENGC; Y 99.1 1.1E-11 3.6E-16 131.4 0.9 111 440-558 206-328 (358)
258 1odf_A YGR205W, hypothetical 3 99.1 3.2E-12 1.1E-16 132.2 -3.3 120 449-578 30-169 (290)
259 3c8u_A Fructokinase; YP_612366 99.1 1.5E-12 5.1E-17 127.9 -5.6 141 447-609 19-168 (208)
260 2kjq_A DNAA-related protein; s 99.1 6.1E-11 2.1E-15 110.3 5.7 35 112-152 30-64 (149)
261 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.7E-13 2E-17 143.0 -10.8 160 119-342 16-209 (392)
262 1in4_A RUVB, holliday junction 99.0 5.6E-13 1.9E-17 140.8 -12.3 168 98-325 19-211 (334)
263 1sq5_A Pantothenate kinase; P- 99.0 2.4E-12 8.1E-17 134.5 -7.7 133 424-576 37-199 (308)
264 2x8a_A Nuclear valosin-contain 99.0 9.2E-14 3.1E-18 142.8 -19.1 46 109-158 32-77 (274)
265 1vma_A Cell division protein F 99.0 1.5E-10 5E-15 120.5 4.7 98 443-572 97-197 (306)
266 2x8a_A Nuclear valosin-contain 99.0 7.7E-13 2.6E-17 135.8 -12.7 138 436-587 32-191 (274)
267 2px0_A Flagellar biosynthesis 99.0 8.5E-10 2.9E-14 114.3 9.1 134 121-333 103-243 (296)
268 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.3E-12 4.5E-17 140.2 -13.4 156 446-626 16-209 (392)
269 1in4_A RUVB, holliday junction 99.0 6.2E-13 2.1E-17 140.5 -16.0 162 425-609 19-211 (334)
270 2yv5_A YJEQ protein; hydrolase 98.9 6.8E-11 2.3E-15 123.0 -0.7 107 448-556 163-300 (302)
271 1ls1_A Signal recognition part 98.9 6.5E-10 2.2E-14 115.2 6.3 130 98-303 77-207 (295)
272 1u0l_A Probable GTPase ENGC; p 98.9 5.2E-11 1.8E-15 123.8 -2.3 55 118-172 164-231 (301)
273 1t9h_A YLOQ, probable GTPase E 98.9 5.7E-11 2E-15 123.4 -2.3 68 118-186 168-251 (307)
274 2px0_A Flagellar biosynthesis 98.9 1.2E-09 4.1E-14 113.2 7.5 135 448-619 103-245 (296)
275 3euj_A Chromosome partition pr 98.9 3.2E-10 1.1E-14 124.4 3.3 75 537-614 373-464 (483)
276 1vma_A Cell division protein F 98.9 4.1E-10 1.4E-14 117.1 3.9 42 116-157 97-138 (306)
277 3euj_A Chromosome partition pr 98.9 4.7E-10 1.6E-14 123.1 3.3 51 437-488 17-67 (483)
278 2dr3_A UPF0273 protein PH0284; 98.9 1.5E-08 5.1E-13 101.0 13.1 56 276-331 127-196 (247)
279 2dr3_A UPF0273 protein PH0284; 98.9 2.1E-08 7.3E-13 99.8 13.9 56 560-615 127-196 (247)
280 1u0l_A Probable GTPase ENGC; p 98.8 4.2E-10 1.4E-14 117.0 -0.0 99 447-546 166-294 (301)
281 1ypw_A Transitional endoplasmi 98.8 6.7E-10 2.3E-14 130.3 -0.8 43 443-487 504-546 (806)
282 2r6a_A DNAB helicase, replicat 98.7 6.5E-09 2.2E-13 114.2 5.1 173 438-618 191-401 (454)
283 2ius_A DNA translocase FTSK; n 98.7 9.3E-10 3.2E-14 121.6 -2.2 168 442-612 159-361 (512)
284 3k1j_A LON protease, ATP-depen 98.7 2.5E-09 8.7E-14 121.7 0.9 179 102-303 39-226 (604)
285 3tr0_A Guanylate kinase, GMP k 98.7 9.8E-10 3.3E-14 106.7 -2.2 52 117-172 1-62 (205)
286 1qhl_A Protein (cell division 98.7 4.9E-10 1.7E-14 111.5 -4.7 54 97-158 9-62 (227)
287 2ius_A DNA translocase FTSK; n 98.7 6.3E-10 2.1E-14 122.9 -5.0 174 115-329 159-362 (512)
288 1iy2_A ATP-dependent metallopr 98.7 2.6E-11 9E-16 124.4 -15.1 130 425-571 50-195 (278)
289 2zr9_A Protein RECA, recombina 98.7 2.4E-08 8.3E-13 105.8 7.1 68 266-333 126-231 (349)
290 1oix_A RAS-related protein RAB 98.6 5.7E-09 1.9E-13 100.5 1.9 36 551-588 153-188 (191)
291 1iy2_A ATP-dependent metallopr 98.6 2.8E-12 9.7E-17 131.6 -23.6 55 99-157 51-105 (278)
292 3lnc_A Guanylate kinase, GMP k 98.6 9.2E-09 3.2E-13 102.3 2.4 39 111-149 15-54 (231)
293 1ixz_A ATP-dependent metallopr 98.6 3.3E-11 1.1E-15 121.8 -15.7 131 425-572 26-172 (254)
294 1t9h_A YLOQ, probable GTPase E 98.6 2.6E-09 8.9E-14 110.9 -1.9 100 447-550 170-302 (307)
295 1qhl_A Protein (cell division 98.6 1.4E-09 4.9E-14 108.1 -5.0 57 424-488 9-65 (227)
296 1oix_A RAS-related protein RAB 98.6 4.6E-08 1.6E-12 94.1 5.6 35 267-303 153-187 (191)
297 2r6a_A DNAB helicase, replicat 98.6 8.9E-08 3.1E-12 105.1 8.3 177 111-333 191-400 (454)
298 3nwj_A ATSK2; P loop, shikimat 98.5 5.2E-09 1.8E-13 105.7 -2.3 52 96-147 16-72 (250)
299 3cmw_A Protein RECA, recombina 98.5 7.8E-06 2.7E-10 101.2 24.7 29 447-475 729-757 (1706)
300 3lnc_A Guanylate kinase, GMP k 98.5 2E-08 6.9E-13 99.8 1.6 177 438-632 15-226 (231)
301 2zr9_A Protein RECA, recombina 98.5 4.5E-07 1.5E-11 96.0 11.3 138 446-619 57-233 (349)
302 3k1j_A LON protease, ATP-depen 98.5 2E-08 6.9E-13 114.2 0.7 155 429-588 39-227 (604)
303 3kta_A Chromosome segregation 98.5 8.3E-08 2.8E-12 91.4 4.7 60 111-171 13-90 (182)
304 3nwj_A ATSK2; P loop, shikimat 98.4 1.4E-08 4.7E-13 102.5 -1.4 52 423-474 16-72 (250)
305 1svm_A Large T antigen; AAA+ f 98.4 1.3E-09 4.5E-14 116.4 -9.9 131 438-572 157-312 (377)
306 1jjv_A Dephospho-COA kinase; P 98.4 8.8E-08 3E-12 93.2 3.5 126 452-615 4-132 (206)
307 2f9l_A RAB11B, member RAS onco 98.4 7.1E-08 2.4E-12 93.1 2.5 35 552-588 130-164 (199)
308 2e87_A Hypothetical protein PH 98.4 3.5E-07 1.2E-11 97.1 8.0 62 255-317 227-293 (357)
309 2ce7_A Cell division protein F 98.4 2.6E-07 8.8E-12 101.6 6.4 112 439-604 40-168 (476)
310 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-07 4.4E-12 91.6 3.6 39 444-486 1-39 (205)
311 2qtf_A Protein HFLX, GTP-bindi 98.4 1.8E-07 6.3E-12 99.5 5.0 133 452-588 181-350 (364)
312 2f9l_A RAB11B, member RAS onco 98.3 4.1E-07 1.4E-11 87.7 5.5 34 268-303 130-163 (199)
313 2ce7_A Cell division protein F 98.3 3.2E-07 1.1E-11 100.9 5.0 59 262-320 93-168 (476)
314 3hr8_A Protein RECA; alpha and 98.3 5E-07 1.7E-11 95.6 6.1 36 119-154 57-92 (356)
315 3kta_A Chromosome segregation 98.3 4.6E-07 1.6E-11 86.2 5.3 38 441-479 18-55 (182)
316 4eun_A Thermoresistant glucoki 98.3 4.8E-08 1.6E-12 94.9 -2.1 39 117-159 23-61 (200)
317 1lvg_A Guanylate kinase, GMP k 98.3 1.9E-07 6.5E-12 90.7 1.7 57 270-331 116-173 (198)
318 2xau_A PRE-mRNA-splicing facto 98.2 6.7E-08 2.3E-12 112.8 -2.5 73 538-610 185-262 (773)
319 3uie_A Adenylyl-sulfate kinase 98.2 5.1E-08 1.7E-12 94.7 -3.2 56 101-157 3-60 (200)
320 2e87_A Hypothetical protein PH 98.2 9.8E-07 3.3E-11 93.7 6.4 121 451-601 168-293 (357)
321 2xau_A PRE-mRNA-splicing facto 98.2 5.4E-07 1.8E-11 105.1 4.5 72 254-325 185-261 (773)
322 3uie_A Adenylyl-sulfate kinase 98.2 4.5E-08 1.5E-12 95.1 -4.0 61 428-489 3-65 (200)
323 3a00_A Guanylate kinase, GMP k 98.2 3.6E-07 1.2E-11 87.6 2.1 29 123-151 1-29 (186)
324 1jjv_A Dephospho-COA kinase; P 98.2 5.6E-07 1.9E-11 87.4 3.5 70 260-331 60-132 (206)
325 2j41_A Guanylate kinase; GMP, 98.2 6.8E-07 2.3E-11 86.5 4.0 35 118-152 1-35 (207)
326 4dcu_A GTP-binding protein ENG 98.2 5.1E-06 1.8E-10 91.1 10.7 57 263-319 88-144 (456)
327 1fnn_A CDC6P, cell division co 98.1 1.1E-05 3.9E-10 85.5 12.7 46 276-322 124-175 (389)
328 3a00_A Guanylate kinase, GMP k 98.1 3.8E-07 1.3E-11 87.4 1.1 30 450-479 1-30 (186)
329 2j41_A Guanylate kinase; GMP, 98.1 1.2E-06 4.1E-11 84.8 4.4 35 445-479 1-35 (207)
330 2qtf_A Protein HFLX, GTP-bindi 98.1 1.4E-05 4.8E-10 84.9 11.4 61 239-303 281-349 (364)
331 4a1f_A DNAB helicase, replicat 98.1 4.9E-06 1.7E-10 87.4 7.3 129 111-314 34-164 (338)
332 3t34_A Dynamin-related protein 98.0 1.1E-05 3.8E-10 85.5 10.1 43 110-155 24-68 (360)
333 4e22_A Cytidylate kinase; P-lo 98.0 6.2E-07 2.1E-11 90.4 0.3 43 110-155 17-62 (252)
334 4e22_A Cytidylate kinase; P-lo 98.0 3.9E-07 1.3E-11 91.9 -1.2 35 448-482 25-62 (252)
335 4eun_A Thermoresistant glucoki 98.0 1.2E-06 4E-11 85.0 2.2 43 442-488 21-63 (200)
336 3vaa_A Shikimate kinase, SK; s 98.0 2.3E-06 7.8E-11 82.8 3.5 38 110-147 12-49 (199)
337 1kgd_A CASK, peripheral plasma 98.0 1.6E-06 5.6E-11 82.5 2.4 35 122-156 4-39 (180)
338 1kgd_A CASK, peripheral plasma 98.0 2.5E-06 8.6E-11 81.2 2.6 34 449-482 4-38 (180)
339 1zu4_A FTSY; GTPase, signal re 97.9 1.4E-06 4.7E-11 91.1 0.5 45 113-157 95-139 (320)
340 1fnn_A CDC6P, cell division co 97.9 2.1E-05 7.2E-10 83.4 9.7 123 449-606 41-175 (389)
341 4a1f_A DNAB helicase, replicat 97.9 1.8E-05 6.2E-10 83.0 8.9 106 440-575 36-141 (338)
342 3vaa_A Shikimate kinase, SK; s 97.9 4.2E-06 1.4E-10 80.9 3.5 38 437-474 12-49 (199)
343 3hr8_A Protein RECA; alpha and 97.9 1.4E-05 4.9E-10 84.4 7.9 39 446-484 57-96 (356)
344 3t34_A Dynamin-related protein 97.9 1.3E-05 4.3E-10 85.1 7.3 42 438-482 25-68 (360)
345 1ixz_A ATP-dependent metallopr 97.9 2.4E-07 8.3E-12 93.2 -5.8 55 99-157 27-81 (254)
346 2dhr_A FTSH; AAA+ protein, hex 97.9 3.8E-08 1.3E-12 108.8 -12.9 131 425-572 41-187 (499)
347 2qby_A CDC6 homolog 1, cell di 97.9 7.3E-06 2.5E-10 86.6 5.1 45 277-321 128-178 (386)
348 2dy1_A Elongation factor G; tr 97.9 3.9E-06 1.3E-10 96.3 2.9 44 274-319 96-139 (665)
349 3tqc_A Pantothenate kinase; bi 97.9 5.9E-07 2E-11 93.8 -3.7 55 429-483 65-127 (321)
350 3tqc_A Pantothenate kinase; bi 97.8 3.8E-07 1.3E-11 95.2 -5.9 61 102-171 65-133 (321)
351 1v5w_A DMC1, meiotic recombina 97.8 3.7E-05 1.2E-09 81.1 9.1 28 119-146 118-145 (343)
352 2vp4_A Deoxynucleoside kinase; 97.8 6E-06 2.1E-10 81.8 2.7 36 119-158 16-51 (230)
353 3tau_A Guanylate kinase, GMP k 97.8 1E-05 3.5E-10 78.9 3.9 29 121-149 6-34 (208)
354 2z43_A DNA repair and recombin 97.8 6.7E-05 2.3E-09 78.3 10.4 28 119-146 103-130 (324)
355 2z43_A DNA repair and recombin 97.8 7.9E-05 2.7E-09 77.8 10.7 28 446-473 103-130 (324)
356 1rz3_A Hypothetical protein rb 97.8 3.5E-06 1.2E-10 81.7 0.0 41 447-487 19-59 (201)
357 3bh0_A DNAB-like replicative h 97.8 2.5E-05 8.7E-10 81.3 6.6 53 260-314 134-189 (315)
358 1rz3_A Hypothetical protein rb 97.8 5.5E-06 1.9E-10 80.3 1.4 38 120-157 19-56 (201)
359 2vp4_A Deoxynucleoside kinase; 97.8 5.5E-06 1.9E-10 82.1 1.4 38 446-487 16-53 (230)
360 3kl4_A SRP54, signal recogniti 97.8 5.7E-05 1.9E-09 81.8 9.2 39 449-487 96-134 (433)
361 3lxx_A GTPase IMAP family memb 97.7 9.8E-05 3.4E-09 73.2 10.1 29 125-153 31-59 (239)
362 3ney_A 55 kDa erythrocyte memb 97.7 9E-06 3.1E-10 78.7 2.4 31 445-475 14-44 (197)
363 1svm_A Large T antigen; AAA+ f 97.7 3.8E-06 1.3E-10 89.6 -0.4 43 111-156 157-199 (377)
364 3tau_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 77.5 4.0 29 448-476 6-34 (208)
365 2dy1_A Elongation factor G; tr 97.7 1.4E-05 4.6E-10 91.8 4.0 134 444-603 3-139 (665)
366 3ney_A 55 kDa erythrocyte memb 97.7 1.1E-05 3.9E-10 78.0 2.7 32 117-148 13-44 (197)
367 2ffh_A Protein (FFH); SRP54, s 97.7 5.3E-06 1.8E-10 89.7 -0.1 172 429-617 81-274 (425)
368 2qt1_A Nicotinamide riboside k 97.7 2E-05 6.9E-10 76.4 3.8 41 119-172 17-57 (207)
369 1zu4_A FTSY; GTPase, signal re 97.7 5E-06 1.7E-10 86.8 -0.6 49 440-488 95-143 (320)
370 2qby_A CDC6 homolog 1, cell di 97.7 2E-05 6.9E-10 83.2 4.0 124 448-605 43-178 (386)
371 1knq_A Gluconate kinase; ALFA/ 97.7 1.1E-05 3.9E-10 75.8 1.7 37 448-488 6-42 (175)
372 1v5w_A DMC1, meiotic recombina 97.6 0.00013 4.5E-09 76.8 9.9 28 446-473 118-145 (343)
373 3b9p_A CG5977-PA, isoform A; A 97.6 0.00027 9.4E-09 72.2 12.0 114 449-614 53-187 (297)
374 3cr8_A Sulfate adenylyltranfer 97.6 1E-05 3.4E-10 90.6 0.8 43 446-488 365-409 (552)
375 1knq_A Gluconate kinase; ALFA/ 97.6 1.9E-05 6.7E-10 74.2 2.6 33 121-157 6-38 (175)
376 3cr8_A Sulfate adenylyltranfer 97.6 1.3E-05 4.4E-10 89.7 1.0 40 119-158 365-406 (552)
377 2p67_A LAO/AO transport system 97.6 6.7E-07 2.3E-11 94.4 -9.1 59 98-156 31-89 (341)
378 2p67_A LAO/AO transport system 97.6 1.1E-06 3.9E-11 92.6 -7.6 58 428-485 34-91 (341)
379 3ice_A Transcription terminati 97.5 1.3E-05 4.3E-10 84.8 0.0 52 423-474 132-198 (422)
380 1kag_A SKI, shikimate kinase I 97.5 3.2E-05 1.1E-09 72.4 2.8 27 122-148 3-29 (173)
381 2hjg_A GTP-binding protein ENG 97.5 8.6E-05 2.9E-09 80.8 6.6 50 269-319 74-124 (436)
382 3b9p_A CG5977-PA, isoform A; A 97.5 0.00018 6.3E-09 73.5 8.5 32 261-292 97-128 (297)
383 3lxx_A GTPase IMAP family memb 97.5 0.00022 7.7E-09 70.6 8.8 42 559-600 110-157 (239)
384 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.6E-05 1.9E-09 69.7 4.0 30 114-144 15-44 (149)
385 1kag_A SKI, shikimate kinase I 97.5 3.8E-05 1.3E-09 71.9 2.8 28 449-476 3-30 (173)
386 3ice_A Transcription terminati 97.5 1.2E-05 4.1E-10 85.0 -0.9 51 97-147 133-198 (422)
387 3kl4_A SRP54, signal recogniti 97.5 0.00029 9.9E-09 76.3 9.5 35 122-156 96-130 (433)
388 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 0.00012 4.1E-09 67.5 5.6 31 441-472 15-45 (149)
389 1ega_A Protein (GTP-binding pr 97.4 1.6E-05 5.5E-10 82.2 -0.5 61 260-327 101-170 (301)
390 3bh0_A DNAB-like replicative h 97.4 0.00017 5.8E-09 75.0 7.1 130 439-598 57-189 (315)
391 1ega_A Protein (GTP-binding pr 97.4 2.2E-06 7.7E-11 88.7 -7.6 61 544-611 101-170 (301)
392 1ypw_A Transitional endoplasmi 97.4 9.7E-05 3.3E-09 86.5 5.3 32 445-476 233-264 (806)
393 2wji_A Ferrous iron transport 97.4 0.001 3.4E-08 61.5 11.0 24 125-148 5-28 (165)
394 2z4s_A Chromosomal replication 97.3 6.8E-05 2.3E-09 81.8 2.6 41 276-316 193-237 (440)
395 3m6a_A ATP-dependent protease 97.3 1.1E-05 3.7E-10 90.5 -4.2 60 425-485 84-143 (543)
396 4eaq_A DTMP kinase, thymidylat 97.3 8.4E-05 2.9E-09 73.6 2.8 42 113-155 13-57 (229)
397 1cke_A CK, MSSA, protein (cyti 97.3 3.2E-05 1.1E-09 75.9 -0.4 34 123-156 5-41 (227)
398 1u94_A RECA protein, recombina 97.3 0.0012 4.2E-08 69.7 11.7 28 120-147 60-87 (356)
399 2qt1_A Nicotinamide riboside k 97.3 0.0001 3.5E-09 71.3 3.0 31 445-475 16-46 (207)
400 2pez_A Bifunctional 3'-phospho 97.3 5.8E-05 2E-09 71.3 1.0 38 448-486 3-42 (179)
401 2pez_A Bifunctional 3'-phospho 97.2 9.5E-05 3.3E-09 69.8 2.0 31 121-152 3-33 (179)
402 4eaq_A DTMP kinase, thymidylat 97.2 0.00011 3.6E-09 72.9 2.4 43 440-483 13-58 (229)
403 3cf0_A Transitional endoplasmi 97.2 0.00057 1.9E-08 70.4 8.0 30 446-475 45-74 (301)
404 2z4s_A Chromosomal replication 97.2 0.00068 2.3E-08 73.8 8.8 41 560-600 193-237 (440)
405 2www_A Methylmalonic aciduria 97.2 0.0001 3.4E-09 77.9 1.8 36 121-156 72-107 (349)
406 1cke_A CK, MSSA, protein (cyti 97.2 4.8E-05 1.6E-09 74.6 -0.6 34 450-483 5-41 (227)
407 3qks_A DNA double-strand break 97.1 0.00021 7.3E-09 69.3 3.7 29 115-144 16-44 (203)
408 2qag_A Septin-2, protein NEDD5 97.1 6.3E-05 2.2E-09 79.8 -0.3 52 423-480 16-67 (361)
409 2qag_A Septin-2, protein NEDD5 97.1 3.1E-05 1.1E-09 82.2 -2.9 52 96-153 16-67 (361)
410 2gj8_A MNME, tRNA modification 97.1 0.00045 1.5E-08 64.6 5.3 27 448-474 2-28 (172)
411 1m7g_A Adenylylsulfate kinase; 97.1 9.3E-05 3.2E-09 72.0 0.6 42 446-487 21-64 (211)
412 4fcw_A Chaperone protein CLPB; 97.1 0.00037 1.3E-08 71.5 5.1 31 124-154 48-78 (311)
413 2www_A Methylmalonic aciduria 97.1 0.0001 3.5E-09 77.8 0.8 37 449-485 73-109 (349)
414 2ffh_A Protein (FFH); SRP54, s 97.1 4.4E-05 1.5E-09 82.6 -2.3 54 100-157 79-132 (425)
415 1f6b_A SAR1; gtpases, N-termin 97.1 0.00014 4.8E-09 69.8 1.4 54 432-486 7-69 (198)
416 3cf0_A Transitional endoplasmi 97.0 0.00049 1.7E-08 70.9 5.5 29 119-147 45-73 (301)
417 3qks_A DNA double-strand break 97.0 0.00056 1.9E-08 66.3 5.6 30 441-471 15-44 (203)
418 3m6a_A ATP-dependent protease 97.0 7.6E-05 2.6E-09 83.6 -0.7 57 100-157 86-142 (543)
419 1m2o_B GTP-binding protein SAR 97.0 0.00054 1.9E-08 65.1 5.2 48 438-486 12-67 (190)
420 3llm_A ATP-dependent RNA helic 97.0 9.1E-05 3.1E-09 73.4 -0.3 26 120-145 73-98 (235)
421 1m7g_A Adenylylsulfate kinase; 97.0 0.00013 4.6E-09 70.9 0.3 39 119-157 21-61 (211)
422 1mky_A Probable GTP-binding pr 96.9 0.00068 2.3E-08 73.7 5.5 37 452-488 182-230 (439)
423 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00015 5.1E-09 80.1 0.1 54 100-157 43-96 (499)
424 1y63_A LMAJ004144AAA protein; 96.9 0.00037 1.3E-08 66.2 2.9 32 115-146 2-33 (184)
425 2q6t_A DNAB replication FORK h 96.9 0.0022 7.4E-08 69.8 9.2 129 112-314 189-318 (444)
426 1j8m_F SRP54, signal recogniti 96.9 4.6E-05 1.6E-09 78.7 -3.9 58 428-488 78-136 (297)
427 2i1q_A DNA repair and recombin 96.9 0.0044 1.5E-07 64.2 11.1 27 446-472 94-120 (322)
428 2if2_A Dephospho-COA kinase; a 96.8 0.00045 1.5E-08 66.5 2.9 21 125-145 3-23 (204)
429 1u94_A RECA protein, recombina 96.8 0.0075 2.5E-07 63.6 12.5 28 447-474 60-87 (356)
430 2yvu_A Probable adenylyl-sulfa 96.8 0.00032 1.1E-08 66.6 1.7 35 120-154 10-44 (186)
431 3lxw_A GTPase IMAP family memb 96.8 0.002 6.9E-08 64.2 7.6 25 125-149 23-47 (247)
432 1m2o_B GTP-binding protein SAR 96.8 0.00075 2.6E-08 64.1 4.2 35 111-146 12-46 (190)
433 2gj8_A MNME, tRNA modification 96.8 0.00069 2.4E-08 63.3 3.6 27 121-147 2-28 (172)
434 1f6b_A SAR1; gtpases, N-termin 96.8 0.00023 8E-09 68.2 0.3 42 104-146 6-48 (198)
435 3h4m_A Proteasome-activating n 96.8 0.0015 5.2E-08 66.1 6.4 27 448-474 49-75 (285)
436 2wji_A Ferrous iron transport 96.8 0.0016 5.3E-08 60.2 5.9 23 452-474 5-27 (165)
437 2b8t_A Thymidine kinase; deoxy 96.8 0.0039 1.3E-07 61.3 9.0 52 277-330 89-150 (223)
438 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00075 2.6E-08 72.1 4.1 40 446-485 18-68 (396)
439 2qor_A Guanylate kinase; phosp 96.7 0.00053 1.8E-08 66.2 2.6 30 119-148 8-37 (204)
440 2if2_A Dephospho-COA kinase; a 96.7 0.00061 2.1E-08 65.5 3.0 21 452-472 3-23 (204)
441 2w58_A DNAI, primosome compone 96.7 0.00083 2.8E-08 64.4 3.9 26 451-476 55-80 (202)
442 2yvu_A Probable adenylyl-sulfa 96.7 0.00036 1.2E-08 66.2 1.2 38 448-485 11-49 (186)
443 2wjg_A FEOB, ferrous iron tran 96.7 0.0011 3.6E-08 62.4 4.6 22 452-473 9-30 (188)
444 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00073 2.5E-08 72.2 3.4 40 119-158 18-68 (396)
445 1j8m_F SRP54, signal recogniti 96.7 0.0002 6.8E-09 73.9 -1.0 54 100-156 77-131 (297)
446 1mky_A Probable GTP-binding pr 96.7 0.0012 4.2E-08 71.7 5.1 34 125-158 182-227 (439)
447 1y63_A LMAJ004144AAA protein; 96.7 0.00076 2.6E-08 64.0 3.0 32 442-473 2-33 (184)
448 2qor_A Guanylate kinase; phosp 96.7 0.00067 2.3E-08 65.5 2.7 30 446-475 8-37 (204)
449 1l8q_A Chromosomal replication 96.6 0.00059 2E-08 70.8 2.3 27 123-149 37-63 (324)
450 2i1q_A DNA repair and recombin 96.6 0.0038 1.3E-07 64.7 8.4 27 119-145 94-120 (322)
451 1sxj_C Activator 1 40 kDa subu 96.6 0.00012 4.1E-09 76.7 -3.3 47 106-152 27-75 (340)
452 4fcw_A Chaperone protein CLPB; 96.6 0.002 7E-08 65.9 5.9 30 451-480 48-77 (311)
453 1sxj_C Activator 1 40 kDa subu 96.5 0.00012 4E-09 76.8 -4.0 50 430-479 24-75 (340)
454 1xp8_A RECA protein, recombina 96.5 0.014 4.7E-07 61.8 11.7 28 119-146 70-97 (366)
455 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.4E-08 62.0 3.4 25 452-476 4-28 (184)
456 3h4m_A Proteasome-activating n 96.5 0.0031 1.1E-07 63.8 6.4 27 121-147 49-75 (285)
457 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.5E-08 61.9 3.3 27 125-151 4-30 (184)
458 1np6_A Molybdopterin-guanine d 96.5 0.00094 3.2E-08 63.2 2.3 37 450-486 6-45 (174)
459 3io5_A Recombination and repai 96.4 0.0071 2.4E-07 62.4 8.6 56 262-317 92-173 (333)
460 3cm0_A Adenylate kinase; ATP-b 96.4 0.0013 4.5E-08 62.0 3.0 26 121-146 2-27 (186)
461 2wjg_A FEOB, ferrous iron tran 96.4 0.0017 5.7E-08 61.0 3.5 22 125-146 9-30 (188)
462 3t61_A Gluconokinase; PSI-biol 96.4 0.0013 4.4E-08 63.2 2.7 25 123-147 18-42 (202)
463 3lxw_A GTPase IMAP family memb 96.4 0.0039 1.3E-07 62.2 6.2 24 452-475 23-46 (247)
464 1njg_A DNA polymerase III subu 96.4 0.0037 1.3E-07 60.4 5.9 42 560-602 125-168 (250)
465 1l8q_A Chromosomal replication 96.3 0.0027 9.1E-08 65.8 4.9 26 450-475 37-62 (324)
466 1njg_A DNA polymerase III subu 96.3 0.0029 9.9E-08 61.2 4.9 43 276-319 125-169 (250)
467 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00042 1.4E-08 72.8 -1.4 37 112-148 11-49 (359)
468 1q3t_A Cytidylate kinase; nucl 96.3 0.0019 6.4E-08 63.8 3.3 26 121-146 14-39 (236)
469 2p5t_B PEZT; postsegregational 96.3 0.00096 3.3E-08 66.8 1.0 41 446-488 28-68 (253)
470 3t61_A Gluconokinase; PSI-biol 96.3 0.0017 6E-08 62.2 2.8 25 450-474 18-42 (202)
471 2v1u_A Cell division control p 96.2 0.0038 1.3E-07 65.6 5.6 28 121-148 42-69 (387)
472 2v1u_A Cell division control p 96.2 0.004 1.4E-07 65.4 5.7 28 448-475 42-69 (387)
473 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00059 2E-08 71.6 -0.7 37 438-474 10-48 (359)
474 3cm0_A Adenylate kinase; ATP-b 96.2 0.002 6.9E-08 60.7 3.0 26 448-473 2-27 (186)
475 2q6t_A DNAB replication FORK h 96.2 0.0099 3.4E-07 64.6 8.5 35 440-474 190-224 (444)
476 1lv7_A FTSH; alpha/beta domain 96.1 0.0016 5.3E-08 65.1 1.9 32 115-148 39-70 (257)
477 1q3t_A Cytidylate kinase; nucl 96.1 0.0026 8.8E-08 62.8 3.4 27 448-474 14-40 (236)
478 1np6_A Molybdopterin-guanine d 96.1 0.0014 4.9E-08 61.9 1.4 26 124-149 7-32 (174)
479 3kb2_A SPBC2 prophage-derived 96.0 0.0031 1.1E-07 58.3 3.3 23 125-147 3-25 (173)
480 1xx6_A Thymidine kinase; NESG, 96.0 0.021 7.3E-07 54.6 9.2 53 276-330 80-142 (191)
481 2p5t_B PEZT; postsegregational 96.0 0.0026 8.8E-08 63.6 2.7 37 119-157 28-64 (253)
482 1qhx_A CPT, protein (chloramph 96.0 0.0039 1.3E-07 58.2 3.6 26 123-148 3-28 (178)
483 3r20_A Cytidylate kinase; stru 95.9 0.0015 5.1E-08 64.7 0.7 25 123-147 9-33 (233)
484 1lv7_A FTSH; alpha/beta domain 95.9 0.0025 8.5E-08 63.6 2.2 23 453-475 48-70 (257)
485 2b8t_A Thymidine kinase; deoxy 95.9 0.026 9E-07 55.3 9.5 52 561-614 89-150 (223)
486 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 58.4 3.6 25 123-147 3-27 (192)
487 3d8b_A Fidgetin-like protein 1 95.9 0.021 7E-07 60.1 9.1 24 451-474 118-141 (357)
488 3n70_A Transport activator; si 95.8 0.021 7.2E-07 51.7 7.9 37 561-598 76-114 (145)
489 3kb2_A SPBC2 prophage-derived 95.8 0.0047 1.6E-07 57.0 3.4 23 452-474 3-25 (173)
490 1gtv_A TMK, thymidylate kinase 95.8 0.0017 5.7E-08 62.7 0.2 30 452-481 2-31 (214)
491 1qhx_A CPT, protein (chloramph 95.8 0.0053 1.8E-07 57.3 3.7 27 449-475 2-28 (178)
492 3bgw_A DNAB-like replicative h 95.8 0.015 5.2E-07 63.1 7.8 53 260-314 263-318 (444)
493 4ag6_A VIRB4 ATPase, type IV s 95.8 0.0025 8.6E-08 68.0 1.6 48 109-157 19-69 (392)
494 3lw7_A Adenylate kinase relate 95.8 0.0047 1.6E-07 56.9 3.2 19 125-143 3-21 (179)
495 3ihw_A Centg3; RAS, centaurin, 95.7 0.01 3.5E-07 55.8 5.5 36 452-487 22-66 (184)
496 1vht_A Dephospho-COA kinase; s 95.7 0.0048 1.6E-07 59.9 3.2 24 122-145 3-26 (218)
497 1gtv_A TMK, thymidylate kinase 95.7 0.0017 5.7E-08 62.7 -0.3 25 125-149 2-26 (214)
498 2rhm_A Putative kinase; P-loop 95.7 0.0042 1.4E-07 58.7 2.6 26 121-146 3-28 (193)
499 2ze6_A Isopentenyl transferase 95.7 0.0047 1.6E-07 61.8 3.1 23 125-147 3-25 (253)
500 4dcu_A GTP-binding protein ENG 95.7 0.022 7.4E-07 62.1 8.5 57 547-603 88-144 (456)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.2e-77 Score=731.44 Aligned_cols=207 Identities=24% Similarity=0.433 Sum_probs=177.3
Q ss_pred CCCCcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----
Q 006442 419 RSGRSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----- 490 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----- 490 (645)
|+..+-|+++||+|+|++ .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 1071 ~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1071 KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHH
T ss_pred CCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHH
Confidence 444556999999999974 369999999999999999999999999999999999999999999999998742
Q ss_pred -----chhccchhhcCCCCCCHHHHHHhhh--ccccHHHHHHHHhhcCCChhh-------hcc----CcCcCCHhHHHHH
Q 006442 491 -----NYFEQNQAEALDLDKTVLETVAEAA--EDWRIDDIKGLLGRCNFKADM-------LDR----KVSLLSGGEKARL 552 (645)
Q Consensus 491 -----~~~~q~~~~~l~~~~tv~e~v~~~~--~~~~~~~~~~~L~~~~l~~~~-------~~~----~~~~LSgGqkqrv 552 (645)
++++|+ ...++.|+++|+.++. ....++++.++++..++. +. .+. ...+||||||||+
T Consensus 1151 lR~~i~~V~Qd---p~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~-~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1151 TRSQIAIVSQE---PTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH-NFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HHTTEEEECSS---CCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCH-HHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HHhheEEECCC---CEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCCh-HHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 345554 3446889999998763 345678888999888873 22 222 3357999999999
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||+++|+|||||||||+||+++.+.+++.|++. +.|+|+|+|+++++.+ ||||+||++|+|+++ |+++++++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEK-GTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEE-ECHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999999999875 4599999999999987 999999999999974 88888875
Q ss_pred H
Q 006442 631 L 631 (645)
Q Consensus 631 ~ 631 (645)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-76 Score=690.74 Aligned_cols=428 Identities=29% Similarity=0.492 Sum_probs=333.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHc-CCCCCccEEEEcCCCceEEEEeccC-ccCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVSM 174 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G-~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~~ 174 (645)
.|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| .+ .|. .. ....+++|++|++ .+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~-~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PT-QEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CC-TTTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-cc-ccceeEEEEccccccccc
Confidence 4777899999999999999999999999999999999999999999995 32 110 00 0123578999985 4557
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+|+...+ .. . ++++.++++.+|+.....+
T Consensus 510 ~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~~~~~ 543 (986)
T 2iw3_A 510 DTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTDEMIA 543 (986)
T ss_dssp TSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCHHHHH
T ss_pred CCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCChhhhc
Confidence 789999874200 00 0 3456678888999656788
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
+++.+|||||||||+|||||+.+|+||||||||||||+.++++|.++|++.|+|||+||||++++..+||+|+++++|++
T Consensus 544 ~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999977889999999999999999999999999998
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEec
Q 006442 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (645)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~ 414 (645)
..+.|+++++...... . ..... ... ....+.+
T Consensus 624 v~~~G~~~e~~~~~~~---------------~-------~~~~~----------------------l~~----~~~~~~~ 655 (986)
T 2iw3_A 624 RKYKGNFTEFVKKCPA---------------A-------KAYEE----------------------LSN----TDLEFKF 655 (986)
T ss_dssp EEEESCHHHHHHHCGG---------------G-------GGSSS----------------------TTT----CCCCCCC
T ss_pred ecCCCCHHHHHhhhHH---------------H-------HHHHh----------------------hhh----hhhhccc
Confidence 6678987765421100 0 00000 000 0000111
Q ss_pred cCC------CCCCCcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 415 PER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 415 p~~------~~~~~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
|.+ ...++++|+++|++++|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 656 p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~ 735 (986)
T 2iw3_A 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735 (986)
T ss_dssp CCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT
T ss_pred cccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc
Confidence 111 1234678999999999975 67999999999999999999999999999999999999999999999863
Q ss_pred ecccchhccchhhc--CCCCCCHHHHHHhh--------------------------------------------------
Q 006442 487 NVLPNYFEQNQAEA--LDLDKTVLETVAEA-------------------------------------------------- 514 (645)
Q Consensus 487 ~~~~~~~~q~~~~~--l~~~~tv~e~v~~~-------------------------------------------------- 514 (645)
...+|+.|+.... ...+.|+.+++...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 2344554442110 01112333222110
Q ss_pred ---------------------------------------------------------hccccHHHHHHHHhhcCCChhh-
Q 006442 515 ---------------------------------------------------------AEDWRIDDIKGLLGRCNFKADM- 536 (645)
Q Consensus 515 ---------------------------------------------------------~~~~~~~~~~~~L~~~~l~~~~- 536 (645)
.......++.+.|+.+|+..+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0001234578899999996544
Q ss_pred hccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCC
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g 616 (645)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+|||+++|++|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 58899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred eEEeeCCC
Q 006442 617 NLQDYAGD 624 (645)
Q Consensus 617 ~i~~~~~~ 624 (645)
+++....+
T Consensus 975 ~Iv~~G~~ 982 (986)
T 2iw3_A 975 RMTPSGHN 982 (986)
T ss_dssp BCCC----
T ss_pred EEEEeCCc
Confidence 99754333
No 3
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-76 Score=660.83 Aligned_cols=432 Identities=24% Similarity=0.330 Sum_probs=327.8
Q ss_pred EEE-EeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcCC-------
Q 006442 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS------- 159 (645)
Q Consensus 98 i~i-~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~~------- 159 (645)
.++ +|++|+|++. .+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 355 5999999876 4999999 999999999999999999999999999999999985 22322
Q ss_pred -----CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCC
Q 006442 160 -----NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (645)
Q Consensus 160 -----~~~i~~v~Q~~~~~~---~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (645)
...+++++|.....+ ..|+.+++...
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------------------------------------------- 133 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------------------------------------------- 133 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------------------------------------------
Confidence 135788888754322 13666654200
Q ss_pred hhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCe
Q 006442 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (645)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~t 308 (645)
...+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+ +.|+|
T Consensus 134 --~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 134 --DETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp --CSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred --hHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0012355678888996 57899999999999999999999999999999999999999999999888774 35899
Q ss_pred EEEEecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 006442 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (645)
||+||||++++..+||+|++++++.. ..+...+.... .+. ....... ..
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~~---~~~~~~~----~~--- 261 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GIN---EFLRGYL----KD--- 261 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HHH---HHHHTEE----TT---
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HHH---HHhhhcc----ch---
Confidence 99999999999999999999976431 12223322100 000 0000000 00
Q ss_pred HHHHHHHHHHHhhhhcccccccceEEeccCCC--CCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHH
Q 006442 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (645)
Q Consensus 387 ~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKS 464 (645)
...... .....+.++... ..++.+++++|+++.|++. .|+++||+|++||++||+||||||||
T Consensus 262 ------------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 262 ------------ENVRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp ------------TTEECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ------------hhhccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 000000 000001111111 1356789999999999764 68999999999999999999999999
Q ss_pred HHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh-hcc-ccHHHHHHHHhhcCCChhhhccCcC
Q 006442 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (645)
Q Consensus 465 TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (645)
||+++|+|+++|++|+|.+. ...+|++|+.. ..+..||.+++... ... ...+.+.++++.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999863 34678887643 34678998887653 111 2245578899999994 77899999
Q ss_pred cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC--C
Q 006442 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--S 616 (645)
Q Consensus 543 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~--g 616 (645)
+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999998764 67999999999999999999999985 6
Q ss_pred eEEeeCCChhHHHH
Q 006442 617 NLQDYAGDYNQVQS 630 (645)
Q Consensus 617 ~i~~~~~~~~~~~~ 630 (645)
++.. .|+.++...
T Consensus 481 ~~~~-~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYGR-ALPPMGMRE 493 (538)
T ss_dssp TEEE-ECCCEEHHH
T ss_pred eEee-cCCHHHHHh
Confidence 6654 366665544
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-74 Score=703.43 Aligned_cols=203 Identities=25% Similarity=0.460 Sum_probs=170.3
Q ss_pred CcEEEEEeeeeeeCCe---eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~---~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
.+.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 6999999999999999999999999999999999999999999999998763
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+. ..++.|+.||+..+.. ....+++.+.++..++. +.. .....+|||||||||+||
T Consensus 1108 ~i~~v~Q~~---~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1108 QLGIVSQEP---ILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp SCEEEESSC---CCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred ceEEECCCC---ccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 24566653 3457899999987543 23455566666665552 222 233468999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||+++|+||||||||++||+.+++.+++.|++. +.|||+||||++++.. ||||++|++|++++ .|+++++++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999999865 4599999999999966 99999999999986 478777764
No 5
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-75 Score=659.68 Aligned_cols=433 Identities=24% Similarity=0.331 Sum_probs=331.0
Q ss_pred cEEE--------EeEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcC
Q 006442 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (645)
Q Consensus 97 ~i~i--------~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~ 158 (645)
+|++ +|++++|++. .+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .+.|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 8999999876 4999999 999999999999999999999999999999999985 2222
Q ss_pred C------------CceEEEEeccCccCC---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHH
Q 006442 159 S------------NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (645)
Q Consensus 159 ~------------~~~i~~v~Q~~~~~~---~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (645)
. ...+++++|.....+ ..||.||+...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 2 124778888653322 23777765210
Q ss_pred HHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0012345678888996 67899999999999999999999999999999999999999999999888775
Q ss_pred c---CCCeEEEEecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006442 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (645)
Q Consensus 304 ~---~g~tvIivsHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (645)
+ .|+|||+||||++++..+||+|++++++.. ..+...+... . .+ ...+....
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~---------------~i---~~~~~~~~- 329 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N---------------GI---NEFLQGYL- 329 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H---------------HH---HHHHHTEE-
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHH----H---------------HH---HHHHhhcc-
Confidence 3 589999999999999999999999986532 1122222110 0 00 00000000
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCC--CCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEE
Q 006442 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (645)
Q Consensus 379 ~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~ 456 (645)
.. ...... .....+.++.+. ..++.+++++|+++.|++. .|+++||+|++||++||+
T Consensus 330 ---~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 330 ---KD---------------ENVRFR--PYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp ---TT---------------TTEECC--SSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred ---hh---------------hhhhcc--ccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 00 000000 000011111111 1346789999999999764 689999999999999999
Q ss_pred cCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh-hcc-ccHHHHHHHHhhcCCCh
Q 006442 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (645)
Q Consensus 457 G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~-~~~-~~~~~~~~~L~~~~l~~ 534 (645)
||||||||||+++|+|+++|++|+|.+. ...+|++|+. ...+..||.+++... ... ...+.+.++|+.+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSC--CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCc--cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999873 3467888764 334678998887653 111 1234577889999995
Q ss_pred hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEE
Q 006442 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v 610 (645)
+..++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv 542 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 6789999999999999999999999999999999999999999999999998864 569999999999999999999
Q ss_pred EEEeC--CeEEeeCCChhHHHH
Q 006442 611 VEVKG--SNLQDYAGDYNQVQS 630 (645)
Q Consensus 611 ~~l~~--g~i~~~~~~~~~~~~ 630 (645)
++|++ |++.. .|+.++...
T Consensus 543 ~vl~~~~g~~~~-~g~p~~~~~ 563 (607)
T 3bk7_A 543 IVFEGEPGRHGR-ALPPMGMRE 563 (607)
T ss_dssp EEEEEETTTEEE-ECCCEEHHH
T ss_pred EEEcCCcceEEe-cCCHHHHHh
Confidence 99985 66654 466665554
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.2e-71 Score=617.56 Aligned_cols=420 Identities=24% Similarity=0.313 Sum_probs=304.0
Q ss_pred eEEEEeCCeeeeeeeeEE-EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EEcCCC---------
Q 006442 102 NISKSYKGVTVLKDVTWE-VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN--------- 160 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~-i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I-----------~~~~~~--------- 160 (645)
+.+.+|+.+. |+-..|. +++||++||+||||||||||+|+|+|+++|++|+| .+.+..
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 5678886542 3334454 45899999999999999999999999999999988 233221
Q ss_pred ---ceEEEEeccCccC---CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhc
Q 006442 161 ---MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~---~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
..+....|..... ...++.+++.. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~~ 114 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------ID 114 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------HC
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------ch
Confidence 1234444432211 12344443210 00
Q ss_pred HHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 006442 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (645)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIiv 312 (645)
..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|+|||+|
T Consensus 115 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~v 193 (538)
T 3ozx_A 115 ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193 (538)
T ss_dssp CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 012345667788885 678999999999999999999999999999999999999999999999887643 38999999
Q ss_pred ecCHHHHHhhcCeEEEEcCcee--EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 390 (645)
|||++++..+||+|+++++|.. ..+...+.. . . .+ ...+......... +
T Consensus 194 sHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~---~-~---------------~~---~~~~~g~~~~~~~-~------ 244 (538)
T 3ozx_A 194 DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA---R-V---------------GI---NNFLKGYLPAENM-K------ 244 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH---H-H---------------HH---HHHHHTEETTTTE-E------
T ss_pred EeChHHHHhhCCEEEEecCCcccccccchhhhH---H-H---------------HH---HHHHhhhchhhhh-h------
Confidence 9999999999999999986532 112222210 0 0 00 0000000000000 0
Q ss_pred HHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH
Q 006442 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (645)
Q Consensus 391 ~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l 470 (645)
. .......... ..........++.+++++|+++.|++. .|..+||+|++||++||+||||||||||+++|
T Consensus 245 ----~---r~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 245 ----I---RPDEIKFMLK--EVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp ----C---SSSCCCCSCC------------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred ----c---cchhhhcccc--ccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0000000000 000000012346789999999999864 57888999999999999999999999999999
Q ss_pred HcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhhccCcCcCCHh
Q 006442 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (645)
Q Consensus 471 ~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (645)
+|+++|++|+|.+++.. .+|++|.. ...+..|+.+|+...... .....+.++++.+++. +..++++.+||||
T Consensus 315 ~Gl~~p~~G~i~~~~~~--i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG 389 (538)
T 3ozx_A 315 VGEITADEGSVTPEKQI--LSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGG 389 (538)
T ss_dssp TTSSCCSBCCEESSCCC--EEEECSSC--CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHH
T ss_pred hCCCCCCCcEEEECCee--eEeechhc--ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHH
Confidence 99999999999987754 35666643 234578999998764221 1224567889999994 6789999999999
Q ss_pred HHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
|||||+|||||+++|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998754 56999999999999999999999985
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-69 Score=610.70 Aligned_cols=452 Identities=21% Similarity=0.315 Sum_probs=305.3
Q ss_pred eEEEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-eEEEEeccCccCCCCCHH
Q 006442 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (645)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-~i~~v~Q~~~~~~~~Tv~ 179 (645)
|++++|+.. ..|++++ .+++|+++||+||||||||||||+|+|+++|++|+|....... .+++ +....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~- 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSEL- 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTH-
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhh-
Confidence 457888754 3677766 6899999999999999999999999999999999873110000 0000 000001
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhc--cchhHHHHhH----HHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc
Q 006442 180 EEFMSAFKEEMEIAGKLERVQKALESA--VDDMDLMGRL----LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (645)
Q Consensus 180 eni~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (645)
.++.. . .....+... ....+.+... .......... ......+++.++++.+|+. ...
T Consensus 153 ~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~~~~~~~~~~~~l~~~gl~-~~~ 215 (608)
T 3j16_B 153 QNYFT---K---------MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----RMEKSPEDVKRYIKILQLE-NVL 215 (608)
T ss_dssp HHHHH---H---------HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----HCCSCHHHHHHHHHHHTCT-GGG
T ss_pred hhhhh---H---------HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----hhhhHHHHHHHHHHHcCCc-chh
Confidence 11000 0 000000000 0000000000 0000000000 0112235678889999996 688
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++ +.|+|||+||||++++..+||+|+++.
T Consensus 216 ~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888764 458999999999999999999999998
Q ss_pred CceeE--EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhccccccc
Q 006442 331 MGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408 (645)
Q Consensus 331 ~G~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~ 408 (645)
+|... .+....+. . . . . ...+..... . .. .. ....
T Consensus 296 ~~~~~~~~~~~~~~~---~-~-~--------------~---~~~~~~~~~---~---------------~~-~~--~~~~ 332 (608)
T 3j16_B 296 GVPSVYGVVTLPASV---R-E-G--------------I---NIFLDGHIP---A---------------EN-LR--FRTE 332 (608)
T ss_dssp SCTTTEEEECCCEEH---H-H-H--------------H---HHHHHTEET---T---------------TT-EE--CSSS
T ss_pred CCccccceecCchhH---H-H-H--------------H---HHhhccccc---h---------------hh-hc--cccc
Confidence 76421 11111110 0 0 0 0 000000000 0 00 00 0000
Q ss_pred ceEEeccCCCCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEE
Q 006442 409 QMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (645)
Q Consensus 409 ~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~G-----e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~ 482 (645)
...+.... ......++..++++.|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+..
T Consensus 333 ~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~ 410 (608)
T 3j16_B 333 ALQFRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI 410 (608)
T ss_dssp CCCCCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred cccccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc
Confidence 00000000 001111223677888975 46799999999999 88999999999999999999999999999731
Q ss_pred ECceecccchhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 483 ~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
. ....+|++|.. ...+..|+.+++..... ......+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 411 -~--~~~i~~~~q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 411 -P--KLNVSMKPQKI--APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp -C--SCCEEEECSSC--CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred -c--CCcEEEecccc--cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 1 12345666653 23456799998764322 12344567889999995 67899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeC--CeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--SNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~--g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++.. .|..++.+..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~-~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH-ARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-CCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-cCChHHHhhh
Confidence 99999999999999999999999988764 57999999999999999999999986 78774 5666666543
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.5e-67 Score=603.75 Aligned_cols=429 Identities=20% Similarity=0.294 Sum_probs=281.6
Q ss_pred CeeeeeeeeEEEECCcEEEEECCCCccHHHHH---------------------HHHHcCCCCCccEE-------EEcCCC
Q 006442 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGNV-------IKAKSN 160 (645)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------~~l~G~~~p~~G~I-------~~~~~~ 160 (645)
...+|+||||+|++||+++|+||||||||||+ +++.|+..|+.|.| .+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 89999999985544 443321
Q ss_pred ------ceEEEEeccCcc-------------------CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 006442 161 ------MKIAFLSQEFEV-------------------SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (645)
Q Consensus 161 ------~~i~~v~Q~~~~-------------------~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (645)
..++|++|.+.. +..+||.||+....... ... .....
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~--~~~-------------~~~~~--- 171 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE--LTE-------------KEAQI--- 171 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc--cch-------------hhhHH---
Confidence 234555554322 13456666653210000 000 00000
Q ss_pred HHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHH
Q 006442 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (645)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~ 293 (645)
......++.++ .++++.+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 172 ------------~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 172 ------------ARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ------------HHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000011112 2457888987555789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHH
Q 006442 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (645)
Q Consensus 294 ~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (645)
++.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|+..+........ .
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~----~-------- 304 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL----T-------- 304 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH----H--------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH----H--------
Confidence 9999988774 46899999999999876 59999999 77776 4567654432110000 0
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcccccccceEEeccC-CCCCCCcEEEEEeeeeeeCCeeceeee
Q 006442 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (645)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~~l~~v 443 (645)
.. .+.. ....+ .+. ........+++.+.. ..+|+|+
T Consensus 305 -----~~---~~~~---------------------~~~~~---------~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 305 -----GQ---YLSG---------------------KKFIP---------IPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp -----HH---HHTT---------------------SSCCC---------CCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred -----HH---Hhcc---------------------ccccc---------cccccccccccceeecCcc-----ccccccc
Confidence 00 0000 00000 011 011223345555533 4589999
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCeeEEEECceeccc----------c
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM----------------------GLEKPRGGEVLLGEHNVLP----------N 491 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~----------------------g~~~p~~G~i~~~g~~~~~----------~ 491 (645)
||+|++||++||+||||||||||+++|+ |+..+ .|.+.+++.++.. +
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 420 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTG 420 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhh
Confidence 9999999999999999999999998764 33322 3567777654310 0
Q ss_pred hhcc-----------------------ch------------------------------------------------hhc
Q 006442 492 YFEQ-----------------------NQ------------------------------------------------AEA 500 (645)
Q Consensus 492 ~~~q-----------------------~~------------------------------------------------~~~ 500 (645)
++.+ +. ...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (670)
T 3ux8_A 421 VFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIA 500 (670)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHH
T ss_pred hhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHH
Confidence 0000 00 000
Q ss_pred CCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHH
Q 006442 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIP 577 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~ 577 (645)
....+|+.+|+.+........+..+.|..+++.....++++.+|||||||||+|||||+++| +||||||||+|||+.
T Consensus 501 ~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 501 EVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 00146788887765433233456778888998644568999999999999999999999887 499999999999999
Q ss_pred HHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHH
Q 006442 578 SKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQV 628 (645)
Q Consensus 578 s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~ 628 (645)
++..+.++|+++ +.|||+||||++++. .||||++| ++|+++. .|+.+++
T Consensus 581 ~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~~ 638 (670)
T 3ux8_A 581 DIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEV 638 (670)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHHH
Confidence 999999998764 569999999999885 69999999 8999985 4666654
No 9
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=7.8e-51 Score=472.39 Aligned_cols=337 Identities=22% Similarity=0.264 Sum_probs=248.9
Q ss_pred hcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHH---ccCCC
Q 006442 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (645)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L---~~~g~ 307 (645)
+++..+++ .|..+|+.....++++.+|||||||||+||++|+.+|+ +|||||||++||+..+++|.++| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 35666776 57899997444799999999999999999999999994 99999999999999999998865 56799
Q ss_pred eEEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 006442 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (645)
Q Consensus 308 tvIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (645)
|||+|+||++++. .||+|++| ++|++ .+.|+++++........ ... +..
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~---l~~--- 487 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQY---LFA--- 487 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHH---HHT---
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHH---hhh---
Confidence 9999999999875 69999999 56665 67888876543210000 000 000
Q ss_pred hhhHHHHHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCC
Q 006442 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (645)
Q Consensus 382 ~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGs 461 (645)
. ...+ +.....+...|+++|+++ ..|+|+||+|++||++||+|+|||
T Consensus 488 ----------------~--~~~~----------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 488 ----------------D--RHTE----------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp ----------------C--CCCC----------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred ----------------c--cccc----------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 0 0000 001113456799999985 269999999999999999999999
Q ss_pred cHHHHHHH-HHcCC-------CC------------------Cee-------EEEECceeccc------------------
Q 006442 462 GKSTLLKL-IMGLE-------KP------------------RGG-------EVLLGEHNVLP------------------ 490 (645)
Q Consensus 462 GKSTLl~~-l~g~~-------~p------------------~~G-------~i~~~g~~~~~------------------ 490 (645)
|||||+++ |+|++ +| .+| .|.+++.++..
T Consensus 535 GKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~ 614 (842)
T 2vf7_A 535 GKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRK 614 (842)
T ss_dssp SHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHH
Confidence 99999997 76543 23 466 67888765410
Q ss_pred ---------------chhccchh----------------hcCC------------------------CCCCHHHHH----
Q 006442 491 ---------------NYFEQNQA----------------EALD------------------------LDKTVLETV---- 511 (645)
Q Consensus 491 ---------------~~~~q~~~----------------~~l~------------------------~~~tv~e~v---- 511 (645)
++|.+|.. ..+. ...++.+++
T Consensus 615 ~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv 694 (842)
T 2vf7_A 615 LFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV 694 (842)
T ss_dssp HHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH
T ss_pred HHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH
Confidence 01111100 0000 123444443
Q ss_pred ----HhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC---CCeEEeeCCCCCCCHHHHHHHHH
Q 006442 512 ----AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP---STLLVLDEPTNHLDIPSKEMLEE 584 (645)
Q Consensus 512 ----~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPt~~LD~~s~~~l~~ 584 (645)
.+........++.++|+.+++.....++++.+|||||||||+||++|+++ |+||||||||+|||+.++..|.+
T Consensus 695 ~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 22211112345778999999964356899999999999999999999996 79999999999999999999999
Q ss_pred HHHhc---CceEEEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 585 AISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 585 ~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
+|+++ +.|||+||||++++ .+||||++| ++|+++. .|+++++.+
T Consensus 775 lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el~~ 827 (842)
T 2vf7_A 775 QLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEVAQ 827 (842)
T ss_dssp HHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHHTT
T ss_pred HHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHHHh
Confidence 88754 67999999999999 689999999 6899985 577777653
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-49 Score=465.68 Aligned_cols=334 Identities=21% Similarity=0.317 Sum_probs=241.7
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivs 313 (645)
..+.|..+|+.....++++.+|||||||||+|||||+++|+ +|||||||+|||+...++|.++|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34567889996445789999999999999999999999887 999999999999999999988874 4689999999
Q ss_pred cCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 006442 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (645)
||++++.. ||+|++| ++|++ .+.|++.++........ ....+ ..
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~~l---~~--------- 573 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGEYL---SG--------- 573 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHHHH---HS---------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhhhh---hc---------
Confidence 99999875 9999999 77776 67888766532110000 00000 00
Q ss_pred HHHHHHHHHHhhhhcccccccceEEeccCCCCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHH
Q 006442 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (645)
Q Consensus 388 ~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl 467 (645)
... ...+.........+++++++ ...|+++||+|+.|++++|+|+||||||||+
T Consensus 574 --------------~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 574 --------------KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp --------------SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred --------------ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 000 00011111223457777765 3469999999999999999999999999997
Q ss_pred ---------HHHHcCCCCC------ee------EEEECceeccc------c-h--------------------------h
Q 006442 468 ---------KLIMGLEKPR------GG------EVLLGEHNVLP------N-Y--------------------------F 493 (645)
Q Consensus 468 ---------~~l~g~~~p~------~G------~i~~~g~~~~~------~-~--------------------------~ 493 (645)
+++.+...+. +| .+.++..++.. . | |
T Consensus 628 ~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~f 707 (916)
T 3pih_A 628 METLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRF 707 (916)
T ss_dssp HHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGG
T ss_pred HHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccc
Confidence 3444443332 22 23443322100 0 0 0
Q ss_pred ccch----------------hhcC--------------------------------CCCCCHHHHHHhhhccccHHHHHH
Q 006442 494 EQNQ----------------AEAL--------------------------------DLDKTVLETVAEAAEDWRIDDIKG 525 (645)
Q Consensus 494 ~q~~----------------~~~l--------------------------------~~~~tv~e~v~~~~~~~~~~~~~~ 525 (645)
..+. +..+ ...+|+.+++.+........+..+
T Consensus 708 s~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~ 787 (916)
T 3pih_A 708 SFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQ 787 (916)
T ss_dssp CTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHH
T ss_pred cccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHH
Confidence 0000 0000 013566676665443333456778
Q ss_pred HHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006442 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599 (645)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd 599 (645)
.|..+|+.....++++.+|||||||||+|||||+++| +||||||||+|||+.+++.|.++|+++ +.|||+||||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8999999654568899999999999999999999875 799999999999999999999998754 5699999999
Q ss_pred HHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 600 RYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 600 ~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
++++.. ||+|++| ++|+|+. .|+.+++++
T Consensus 868 L~~i~~-ADrIivLgp~gg~~~G~Iv~-~Gtpeel~~ 902 (916)
T 3pih_A 868 LDVIKN-ADHIIDLGPEGGKEGGYIVA-TGTPEEIAK 902 (916)
T ss_dssp HHHHTT-CSEEEEEESSSGGGCCEEEE-EESHHHHHS
T ss_pred HHHHHh-CCEEEEecCCCCCCCCEEEE-EcCHHHHHh
Confidence 999875 9999999 8999985 578877654
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.6e-49 Score=461.41 Aligned_cols=336 Identities=21% Similarity=0.287 Sum_probs=243.4
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (645)
++.+++ +.|..+|+..-.+++++.+|||||||||+||++|..+| ++|||||||+|||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999644579999999999999999999999985 999999999999999999998875 457999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 006442 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (645)
||+|+||++++. .||+|++| ++|++ .+.|+++++...... ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 56766 677887654321000 00
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccceEEeccCC-CCCCCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCC
Q 006442 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER-GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (645)
Q Consensus 383 ~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGs 461 (645)
+. .+ ....... .|.. .....+.|++++++. ..|+|+||+|+.||++||+|+|||
T Consensus 607 ~~------~l---~g~~~~~-----------~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ------YL---SGKKFIP-----------IPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH------HH---HTSSCCC-----------CCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH------Hh---cCCcccc-----------CccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 00 0000000 0111 112346799999873 369999999999999999999999
Q ss_pred cHHHHHHHHH-cCC-------CCCee-------------EEEECceecc--c---------------------------c
Q 006442 462 GKSTLLKLIM-GLE-------KPRGG-------------EVLLGEHNVL--P---------------------------N 491 (645)
Q Consensus 462 GKSTLl~~l~-g~~-------~p~~G-------------~i~~~g~~~~--~---------------------------~ 491 (645)
|||||+++|+ |.+ .+..| .|.+++.++. + +
T Consensus 662 GKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~G 741 (972)
T 2r6f_A 662 GKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRG 741 (972)
T ss_dssp SHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhc
Confidence 9999999854 221 11222 3677765541 0 0
Q ss_pred hhcc----chh----------------hcCC--------------------------------CCCCHHHHHHhhhcccc
Q 006442 492 YFEQ----NQA----------------EALD--------------------------------LDKTVLETVAEAAEDWR 519 (645)
Q Consensus 492 ~~~q----~~~----------------~~l~--------------------------------~~~tv~e~v~~~~~~~~ 519 (645)
|..+ |.. ..+. ..+|+.+++.+......
T Consensus 742 y~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~ 821 (972)
T 2r6f_A 742 YKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPK 821 (972)
T ss_dssp CCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHH
T ss_pred ccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchh
Confidence 1111 000 0000 02455666544322112
Q ss_pred HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceE
Q 006442 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV 593 (645)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tv 593 (645)
..+..++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.||
T Consensus 822 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV 901 (972)
T 2r6f_A 822 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2345688999999643678999999999999999999999865 999999999999999999999998754 5699
Q ss_pred EEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHH
Q 006442 594 ITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 594 i~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~ 629 (645)
|+||||++++. +||||++| ++|+++. .|..+++.
T Consensus 902 IvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~-~g~~~el~ 941 (972)
T 2r6f_A 902 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEVA 941 (972)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSTTSCCSEEE-EESHHHHH
T ss_pred EEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEE-ecCHHHHH
Confidence 99999999984 79999999 6899975 46666554
No 12
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.8e-49 Score=459.85 Aligned_cols=337 Identities=22% Similarity=0.280 Sum_probs=241.2
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~--p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~t 308 (645)
++.+++ +.|..+|+..-.+++++.+|||||||||+||++|..+ |++|||||||+|||+...++|.+.| ++.|.|
T Consensus 497 ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 575 (993)
T 2ygr_A 497 EIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNT 575 (993)
T ss_dssp HHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 345555 3578899863347999999999999999999999999 5899999999999999999998776 457999
Q ss_pred EEEEecCHHHHHhhcCeEEEE------cCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 006442 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (645)
Q Consensus 309 vIivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (645)
||+|+||++++. .||+|++| ++|++ .+.|+++++....... .... +.+
T Consensus 576 VIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~i-v~~G~~~e~~~~~~~l-----------------t~~~---l~g---- 629 (993)
T 2ygr_A 576 LIVVEHDEDTIE-HADWIVDIGPGAGEHGGRI-VHSGPYDELLRNKDSI-----------------TGAY---LSG---- 629 (993)
T ss_dssp EEEECCCHHHHH-TCSEEEEECSSSGGGCCSC-CEEECHHHHHHCTTCH-----------------HHHH---HHT----
T ss_pred EEEECCCHHHHH-hCCEEEEecCccccCCCEE-EEeeCHHHhhhhhHHH-----------------HHHH---hcc----
Confidence 999999999986 69999999 56665 6788887654321000 0000 000
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccceEEeccCCC-CCC-CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCC
Q 006442 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460 (645)
Q Consensus 383 ~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~-~~~-~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NG 460 (645)
...... |... ... .+.|++++++. ..|+++||+|+.|+++||+|+||
T Consensus 630 ---------------~~~~~~-----------~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nG 678 (993)
T 2ygr_A 630 ---------------RESIEI-----------PAIRRSVDPRRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSG 678 (993)
T ss_dssp ---------------SSCCCC-----------CSSCCCCCSSSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTT
T ss_pred ---------------CccccC-----------ccccccCCCCceEEEecCcc-----ccccCceEEECCCCEEEEEcCCC
Confidence 000000 1110 111 35799999873 36999999999999999999999
Q ss_pred CcHHHHHHHHH-c----CCC---CCeeE-------------EEECceecc------c-----------------------
Q 006442 461 CGKSTLLKLIM-G----LEK---PRGGE-------------VLLGEHNVL------P----------------------- 490 (645)
Q Consensus 461 sGKSTLl~~l~-g----~~~---p~~G~-------------i~~~g~~~~------~----------------------- 490 (645)
||||||+++|+ | .+. +..|. |.+++.++. +
T Consensus 679 SGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~ 758 (993)
T 2ygr_A 679 SGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVR 758 (993)
T ss_dssp SSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 2 221 23343 334443321 0
Q ss_pred chhcc----chh----------------hcCC------------------------C--------CCCHHHHHHhhhccc
Q 006442 491 NYFEQ----NQA----------------EALD------------------------L--------DKTVLETVAEAAEDW 518 (645)
Q Consensus 491 ~~~~q----~~~----------------~~l~------------------------~--------~~tv~e~v~~~~~~~ 518 (645)
+|..+ |.. ..+. . .+|+.+++.+.....
T Consensus 759 gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~ 838 (993)
T 2ygr_A 759 GYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA 838 (993)
T ss_dssp TCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH
T ss_pred cccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch
Confidence 01001 000 0000 0 234555554322111
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC---CeEEeeCCCCCCCHHHHHHHHHHHHhc---Cce
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~t 592 (645)
...+..++|+.+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|
T Consensus 839 ~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~T 918 (993)
T 2ygr_A 839 GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 22345678999999543678999999999999999999999865 999999999999999999999998754 579
Q ss_pred EEEEecCHHHHHhhCCEEEEE------eCCeEEeeCCChhHHHH
Q 006442 593 VITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 593 vi~vsHd~~~i~~~~d~v~~l------~~g~i~~~~~~~~~~~~ 630 (645)
||+||||++++ ..||||++| ++|+++. .|+++++.+
T Consensus 919 VIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~-~G~~~el~~ 960 (993)
T 2ygr_A 919 VIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVA-QGTPEDVAA 960 (993)
T ss_dssp EEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEE-EECHHHHHH
T ss_pred EEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEE-ecCHHHHHh
Confidence 99999999998 579999999 6899975 577777654
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-47 Score=404.00 Aligned_cols=208 Identities=26% Similarity=0.378 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------ceEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------~~i~ 164 (645)
+|+++|++|+|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..||
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 5999999999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++.+++.+||+||+..+... ......+.++++.++++
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 124 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAMLE 124 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHHH
Confidence 999999999999999999643210 00122234567788899
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~ 320 (645)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.| ++.|+|||+||||++++.
T Consensus 125 ~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 125 LTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred HcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99996 6889999999999999999999999999999999999999999988887643 457999999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.+||||++|++|++ ...|+..+.+
T Consensus 204 ~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHCCEEEEEECCEE-EEEeCHHHHH
Confidence 99999999999998 4567765543
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7e-47 Score=401.32 Aligned_cols=210 Identities=25% Similarity=0.423 Sum_probs=180.9
Q ss_pred CCccEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------
Q 006442 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (645)
Q Consensus 94 ~~~~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------- 160 (645)
.+++|+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4457999999999963 469999999999999999999999999999999999999999999998753
Q ss_pred ----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
.+|||++|++.+++..||+||+...... ...+..+..
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~~ 141 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEVK 141 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHH
Confidence 2599999999998899999998632110 011223445
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIiv 312 (645)
+++.++|+.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+|
T Consensus 142 ~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~v 220 (366)
T 3tui_C 142 RRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220 (366)
T ss_dssp HHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788899999996 67899999999999999999999999999999999999999999999988774 359999999
Q ss_pred ecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|||++++..+||+|++|++|++ ...|+..+.
T Consensus 221 THdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev 251 (366)
T 3tui_C 221 THEMDVVKRICDCVAVISNGEL-IEQDTVSEV 251 (366)
T ss_dssp ESCHHHHHHHCSEEEEEETTEE-EECCBHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999999998 456765543
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1e-46 Score=377.89 Aligned_cols=199 Identities=27% Similarity=0.400 Sum_probs=172.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------c
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~ 161 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 36999999999998889999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.|+|++|++.+++..||+||+...... . ..+.....+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLK---------------M------------------------GKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHH---------------T------------------------TCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHH
Confidence 499999999888889999998532100 0 0111122345677
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~ 318 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|+|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 88899996 57889999999999999999999999999999999999999999999988774 348999999999999
Q ss_pred HHhhcCeEEEEcCceeE
Q 006442 319 LDQLCTKIVETEMGVSR 335 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~ 335 (645)
+ .+||+++++++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999873
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-46 Score=383.70 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=178.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
.++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3469999999999988999999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.+++..||+||+...... .. .......++++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHH
Confidence 99999999888888999998532100 00 00111223456778
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 8899985 67889999999999999999999999999999999999999999999988774 3489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
..+||+|+++++|++. +.|+..+.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDL 246 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999984 45665543
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-46 Score=401.66 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
.|+++|++|+|++..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4999999999999999999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+..+.++++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998632110 012233455678889999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 68899999999999999999999999999999999999999999998887764 349999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 556655443
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.8e-47 Score=388.73 Aligned_cols=209 Identities=22% Similarity=0.384 Sum_probs=178.4
Q ss_pred ccEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
++|+++|++|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4599999999999999999999999999999999999999999999987532 5
Q ss_pred EEEEeccCc-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
|||++|+|. .++..||+||+...... ...+..+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHT---------------------------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999984 34578999998632100 01122234566788
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 89999995 67899999999999999999999999999999999999999999999988764 34899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||+|++|++|++ .+.|+..+..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~ 232 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVF 232 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHT
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 99999999999999998 4667766543
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-46 Score=383.21 Aligned_cols=208 Identities=26% Similarity=0.452 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc---------------
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------------- 161 (645)
+|+++|++++|++.++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 59999999999988999999999999999999999999999999999999999999999987421
Q ss_pred --------eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh
Q 006442 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (645)
Q Consensus 162 --------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (645)
.|||++|++.+++.+||+||+...... .. ..+..
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCHH
Confidence 399999999888889999998532100 00 01111
Q ss_pred cHHHHHHhhchhcCCCccc-ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 006442 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~-~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tv 309 (645)
..++++.++++.+|+. +. .++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|+ +.|+||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2245677888999996 56 789999999999999999999999999999999999999999999988774 348999
Q ss_pred EEEecCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 310 IivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
|+||||++++..+||+|+++++|++. ..|+..+.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 240 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 240 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999999984 45665544
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-46 Score=378.47 Aligned_cols=202 Identities=27% Similarity=0.369 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC------------
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~------------ 160 (645)
+|+++|++|+|++ .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3899999999963 469999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHH
Q 006442 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (645)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (645)
..|||++|++.+++..||+||+...... ... .........++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 1499999999988889999998632100 000 00111223456
Q ss_pred HHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 006442 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (645)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsH 314 (645)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 677888999974445899999999999999999999999999999999999999999999888743 3899999999
Q ss_pred CHHHHHhhcCeEEEEcCceeE
Q 006442 315 DRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~ 335 (645)
|++.+ .+||+|++|++|++.
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99965 799999999999974
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-46 Score=379.22 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=177.9
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC---------ceEEE
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---------~~i~~ 165 (645)
.++|+++|++|+|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 456999999999998899999999999999999999999999999999999999999999998743 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..||+||+..... +. ........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988888899999853210 00 01111223456678888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||++|||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 8986 57889999999999999999999999999999999999999999999988774 3589999999999999999
Q ss_pred cCeEEEEcCceeEEeccChHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||+++++++|++. +.|+..+.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHH
Confidence 9999999999984 45665443
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-45 Score=379.19 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=178.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~ 165 (645)
++|+++|++++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987532 4999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.+++..||+||+...... .......+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAP-----------------------------------------YGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTT-----------------------------------------SCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhh-----------------------------------------cCcHHHHHHHHHHHHH
Confidence 99999888889999998632110 0112234566778888
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~------~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd 315 (645)
+|+. +..++++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.++|++ .++|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9986 57889999999999999999999999 9999999999999999999999887743 35799999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||+|++|++|++. +.|+..+
T Consensus 208 l~~~~~~~d~v~vl~~G~i~-~~g~~~~ 234 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKLV-ACGTPEE 234 (266)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHH
Confidence 99999999999999999984 5566544
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.7e-46 Score=375.29 Aligned_cols=206 Identities=21% Similarity=0.323 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-----------eEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-----------~i~ 164 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 369999999999988899999999999999999999999999999999999999999999987421 399
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+++..||+||+...... ........+.+.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhc----------------------------------------CCCHHHHHHHHHHHHH
Confidence 999999888888999998632100 0001122334455666
Q ss_pred hcC-CCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 006442 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~ 320 (645)
.++ +. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 663 64 46788899999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcCeEEEEcCceeEEeccChHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
.+||+|+++++|++. +.|+..+
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~ 225 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASE 225 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHH
Confidence 999999999999984 4565544
No 24
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7.4e-46 Score=393.52 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=181.1
Q ss_pred CccEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEE
Q 006442 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (645)
Q Consensus 95 ~~~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~ 165 (645)
..+|+++|++|+| ++.++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4569999999999 87789999999999999999999999999999999999999999999998743 35999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
|+|++.+++.+||+||+...... ...+..+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999998999999998632110 001122335667788999
Q ss_pred cCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 006442 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~ 321 (645)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|++ .|.|||+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 678999999999999999999999999999999999999999999999887643 48999999999999999
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+||+|++|++|++. ..|+..+.+
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999984 557655443
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.2e-46 Score=381.92 Aligned_cols=218 Identities=21% Similarity=0.232 Sum_probs=178.1
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~ 164 (645)
++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 1499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHH-HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHH-HhCChhcHHHHHHhh
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKA-QAVNLDTLDAKVSKL 242 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l 242 (645)
|++|++.+++..||.||+...... ..... ..+ +.. .........+++.++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-------~~~---------------------~~~~~~~~~~~~~~~~~~~ 137 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPL-------NSL---------------------FYKKWIPKEEEMVEKAFKI 137 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHH-------HHH---------------------HHCSSCCCCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcc-------ccc---------------------ccccccCCHHHHHHHHHHH
Confidence 999999887889999998632110 00000 000 000 000111234567788
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 138 l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 138 LEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 67889999999999999999999999999999999999999999999988774 3489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
..+||+|+++++|++. +.|+..+
T Consensus 217 ~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 217 LNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp GGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHhCCEEEEEECCEEE-EEeCHHH
Confidence 9999999999999974 4455444
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.8e-45 Score=378.92 Aligned_cols=206 Identities=28% Similarity=0.403 Sum_probs=178.9
Q ss_pred CcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
.++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 46999999999999999999999999999999999999999999999998762
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|++...+ +..||.+|+.+..... ..+.+.++|+.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 346677654333 4789999998764211 13457889999999 57789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++++
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 233 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVFA 233 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-EECHHHHTH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHhc
Confidence 999999999999999999999988754 4699999999999999999999999999985 577766543
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-45 Score=392.68 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 4999999999988889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+..+.++++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998632110 001122334567888999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887743 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 556655543
No 28
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-45 Score=392.72 Aligned_cols=207 Identities=26% Similarity=0.398 Sum_probs=178.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+....... ..+..+.++++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRAR---------------------------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSS---------------------------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 00001123457788899999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|++|++|++. ..|+..+.
T Consensus 203 ri~vl~~G~i~-~~g~~~~l 221 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEV 221 (359)
T ss_dssp EEEEEETTEEE-EEECHHHH
T ss_pred EEEEEECCEEE-EeCCHHHH
Confidence 99999999984 55765544
No 29
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.2e-45 Score=387.69 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=178.8
Q ss_pred CCCCcEEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----
Q 006442 419 RSGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----- 489 (645)
....++|+++||++.|+. ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345668999999999963 46899999999999999999999999999999999999999999999998763
Q ss_pred --------cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHH
Q 006442 490 --------PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (645)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lA 555 (645)
.+|++|+ ..+++.+||.+|+.+.... ...+++.++|+.+|+ .+..++++.+|||||||||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~--~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 99 ELTKARRQIGMIFQH--FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHTTEEEECSS--CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCC--CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHH
Confidence 2455665 4677889999999876421 113457889999999 4778999999999999999999
Q ss_pred HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 556 ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||+.+|+||||||||++||+.++..+.++|++. +.|||+||||++++.++||||++|++|+++. .|+.++++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev~ 252 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEVF 252 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHHH
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999999999999998754 5699999999999999999999999999985 57766654
No 30
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.1e-45 Score=392.02 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------ce
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------------~~ 162 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4899999999998889999999999999999999999999999999999999999999987632 25
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
||||+|++.+++.+||+||+...... ...+....++++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998632110 001122334567788
Q ss_pred chhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~ 318 (645)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 678999999999999999999999999999999999999999999999887643 48999999999999
Q ss_pred HHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+..+||+|++|++|++. ..|+..+.+
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999984 557765544
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-45 Score=392.14 Aligned_cols=208 Identities=28% Similarity=0.402 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (645)
+|+++|++|+|++.++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. ..||||+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+....... ..+..+.++++.++++.+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIK---------------------------------------KFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHhc---------------------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 01112334567788999999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 678999999999999999999999999999999999999999999999887643 48999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+|++|++|++. ..|+..+.+
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999984 557655443
No 32
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5e-45 Score=373.90 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=177.4
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3699999999999889999999999999999999999999999999999999999999999998763
Q ss_pred ----------cchhccchhhcCCCCCCHHHHHHhhh-c--cc----cHHHHHHHHhhcCCChhh-hccCcCcCCHhHHHH
Q 006442 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA-E--DW----RIDDIKGLLGRCNFKADM-LDRKVSLLSGGEKAR 551 (645)
Q Consensus 490 ----------~~~~~q~~~~~l~~~~tv~e~v~~~~-~--~~----~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqkqr 551 (645)
.+|++|+ ..+++..||.+|+.... . .. ..+.+.++|+.+|+. +. .++++.+||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecC--cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 1244444 35667789999998742 1 11 124577899999995 66 799999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
|+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999998764 5699999999999999999999999999985 4666665
Q ss_pred HH
Q 006442 629 QS 630 (645)
Q Consensus 629 ~~ 630 (645)
.+
T Consensus 241 ~~ 242 (262)
T 1b0u_A 241 FG 242 (262)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 33
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.3e-45 Score=372.76 Aligned_cols=203 Identities=24% Similarity=0.389 Sum_probs=178.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 699999999999889999999999999999999999999999999999999999999999998762 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhh-c--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAA-E--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~-~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
|++|+ ..+++..||.+|+.+.. . ... .+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++
T Consensus 104 ~v~Q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 104 MVFQR--FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EECSS--CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 45554 34667789999998742 1 111 2457789999999 4678999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+.+++.+
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 248 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLFD 248 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999998764 5699999999999999999999999999985 477776654
No 34
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.8e-45 Score=391.57 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCee--eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------------c
Q 006442 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (645)
Q Consensus 97 ~i~i~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------~ 161 (645)
+|+++|++|+|++.+ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998877 9999999999999999999999999999999999999999999987632 2
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
.||||+|++.+++.+||+||+...... ...+....++++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998999999998643210 00111233456778
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~ 317 (645)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|+|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 89999996 678999999999999999999999999999999999999999999999887643 4899999999999
Q ss_pred HHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
++..+||+|++|++|++. ..|+..+.+
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999984 556655443
No 35
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.3e-45 Score=386.16 Aligned_cols=203 Identities=26% Similarity=0.433 Sum_probs=178.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------cc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------~~ 491 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999998761 24
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+ ..+++.+||.+|+.++... ...+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|
T Consensus 84 ~vfQ~--~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 84 YLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI-SELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp EECTT--CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeCC--CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 55654 4677899999999986431 123467889999999 57889999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.++..+.+.|. +.+.|||+||||++++..+||||++|++|+++. .|+.+++..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~~ 228 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELYR 228 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHHh
Confidence 9999999999999998887554 346799999999999999999999999999985 466666543
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.9e-45 Score=386.23 Aligned_cols=203 Identities=27% Similarity=0.407 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (645)
+|+++|++|+|++. +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|... .|||++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 38999999999888 99999999999999999999999999999999999999999999987532 5999999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++.+++.+||+||+...... ...+. . +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~-~--~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIKD-P--KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCCC-H--HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCCH-H--HHHHHHHHHcCC
Confidence 99998999999998632110 00111 1 456788889999
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d 324 (645)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.++|+ +.|+|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 67899999999999999999999999999999999999999999999988764 358999999999999999999
Q ss_pred eEEEEcCceeEEeccChHHH
Q 006442 325 KIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 325 ~i~~l~~G~~~~~~g~~~~~ 344 (645)
+|++|++|++. ..|+..+.
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999984 45665443
No 37
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-44 Score=371.33 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=179.3
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
.++|+++|+++.|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 35899999999999999999999999999999999999999999999999999999999999998863 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHcc------C
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK------P 561 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~------~ 561 (645)
|+.|+ ..+.+..||.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||++ +
T Consensus 89 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQY--SELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSC--CCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecC--CccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 44544 3455778999999876432 2245688899999994 67899999999999999999999999 9
Q ss_pred CCeEEeeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 562 p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|++|||||||+|||+.++..+.+.|+++ + .|||+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999998765 3 499999999999999999999999999985 47776654
No 38
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.9e-44 Score=361.35 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=170.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------------
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------- 489 (645)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3799999999999888999999999999999999999999999999999999999999999998762
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ ..+.+..|+.+|+...... ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 83 KLGFVFQF--HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HEEEECSS--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred cEEEEecC--cccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1244443 3566778999999875321 1134578899999994 6789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
++|||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999998764 56999999999998 7899999999999975
No 39
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.7e-45 Score=369.78 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 97 ~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
+|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++.+++.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---YQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---CSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---eccEEEEcCCCccCCC
Confidence 599999999998 788999999999999999999999999999999999999999999984 3469999999988888
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
.||+||+....... ... ........++++.++++.+|+. +..++
T Consensus 81 ~tv~enl~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 124 (253)
T 2nq2_C 81 YSVLDIVLMGRSTH--------------INT---------------------FAKPKSHDYQVAMQALDYLNLT-HLAKR 124 (253)
T ss_dssp CBHHHHHHGGGGGG--------------SCT---------------------TCCCCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred CCHHHHHHHhhhhh--------------ccc---------------------ccCCCHHHHHHHHHHHHHcCCh-HHhcC
Confidence 99999986321000 000 0000011234567788888986 57789
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~-g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++ . |+|||++|||++++..+||+++++++
T Consensus 125 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204 (253)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999887743 3 89999999999999999999999999
Q ss_pred ceeEEeccChHH
Q 006442 332 GVSRTYEGNYSQ 343 (645)
Q Consensus 332 G~~~~~~g~~~~ 343 (645)
|+ .+.|+..+
T Consensus 205 G~--~~~g~~~~ 214 (253)
T 2nq2_C 205 QN--FKFGETRN 214 (253)
T ss_dssp TE--EEEEEHHH
T ss_pred Ce--EecCCHHH
Confidence 98 45566443
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-45 Score=377.80 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=175.1
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc------------e
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~------------~ 162 (645)
.++|+++|++|+|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 3469999999999988999999999999999999999999999999999999999999999987532 4
Q ss_pred EEEEeccCccCC--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 163 IAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 163 i~~v~Q~~~~~~--~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
|+|++|++.+.+ ..||+||+.......... . ........+++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~-------~----------------------------~~~~~~~~~~~~ 143 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV-------Y----------------------------QDIDDEIRNEAH 143 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhcccc-------c----------------------------cCCcHHHHHHHH
Confidence 999999986434 459999986431100000 0 000112234567
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEecC
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tv--IivsHd 315 (645)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|| |+||||
T Consensus 144 ~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 144 QLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 788889995 678899999999999999999999999999999999999999999999988743 38899 999999
Q ss_pred HHHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
++++..+||+|++|++|++. +.|+..+
T Consensus 223 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 249 (279)
T 2ihy_A 223 IEEITANFSKILLLKDGQSI-QQGAVED 249 (279)
T ss_dssp GGGCCTTCCEEEEEETTEEE-EEEEHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999974 4566543
No 41
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-44 Score=364.76 Aligned_cols=195 Identities=27% Similarity=0.384 Sum_probs=168.6
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999973 46999999999999999999999999999999999999999999999998752
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhc-----c----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE-----D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~-----~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+ +.+++..||.+|+..... . ...+++.++|+.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTT--CCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecC--CccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2355554 456678899999987431 1 113457789999999643458999999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEee
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~ 621 (645)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||||++|++|++...
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998754 56999999999965 78999999999999863
No 42
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-44 Score=365.16 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=176.0
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 45799999999999888999999999999999999999999999999999999999999999998762 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc---ccc--HHHHHHHHhhcC-CChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE---DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~---~~~--~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+|++|+ ..+++..|+.||+..... ... .+.+.++++.++ + .+..++++.+|||||||||+|||||+.+|++
T Consensus 84 ~~v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 84 ALVPEG--RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp EEECSS--CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecC--CccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 345554 356677899999987531 111 234677888884 7 4667899999999999999999999999999
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|+++. .|+.+++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999765 4699999999999999999999999999985 46666654
No 43
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.1e-44 Score=384.60 Aligned_cols=202 Identities=28% Similarity=0.441 Sum_probs=179.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999998763 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... ...+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~--~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 83 S--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp T--CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred C--CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 4678899999999876431 113467889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 99999999999999888754 6799999999999999999999999999986 46666554
No 44
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9e-45 Score=367.01 Aligned_cols=201 Identities=27% Similarity=0.367 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------ceEEEEecc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (645)
|+++|++|+|++ +|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 789999999976 49999999999 9999999999999999999999999999999998742 259999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..||+||+...... ......++++.++++.+|+.
T Consensus 79 ~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~ 117 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGIA 117 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTCT
T ss_pred CccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCCH
Confidence 9888888999998632110 00000134566788889986
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~ 325 (645)
+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||++|||++++..+||+
T Consensus 118 -~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 196 (240)
T 2onk_A 118 -HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE 196 (240)
T ss_dssp -TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred -HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 578899999999999999999999999999999999999999999999888743 389999999999999999999
Q ss_pred EEEEcCceeEEeccChHHH
Q 006442 326 IVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~ 344 (645)
++++++|++. ..|+..+.
T Consensus 197 i~~l~~G~i~-~~g~~~~~ 214 (240)
T 2onk_A 197 VAVMLNGRIV-EKGKLKEL 214 (240)
T ss_dssp EEEEETTEEE-EEECHHHH
T ss_pred EEEEECCEEE-EECCHHHH
Confidence 9999999984 45665543
No 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-44 Score=374.18 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=176.6
Q ss_pred CCcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------
Q 006442 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (645)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------- 489 (645)
...+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 455799999999999889999999999999999999999999999999999999999999999997653
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc-------ccc---HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~-------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+....+....||.||+..... ... .+++.++|+.+|+ .+..++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHH
Confidence 245565532223335699999986421 011 2457789999999 4678999999999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV--ITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+.+|++|||||||++||+.+++.+.+.|+++ +.|| |+||||++++..+||+|++|++|+++. .|+.+++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999999999765 5699 999999999999999999999999985 46666653
No 46
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-44 Score=369.60 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=176.4
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------c
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~ 490 (645)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999889999999999999999999999999999999999999999999999998762 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhcc---------------c-c---HHHHHHHHhhcCCChhhhccCcCcCCHhHHHH
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W-R---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~---------------~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (645)
+|++|+. .+.+..||.||+...... . . ...+.++++.+|+ .+..++++.+||||||||
T Consensus 85 ~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-SHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHH
T ss_pred EEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC-chhhCCCchhCCHHHHHH
Confidence 3455543 455678999999875321 1 1 2357789999999 467899999999999999
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
|+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|||+++|++|+++. .|+.++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999999765 5699999999999999999999999999985 466666
No 47
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.3e-44 Score=379.93 Aligned_cols=208 Identities=26% Similarity=0.395 Sum_probs=181.5
Q ss_pred CCCCcEEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------
Q 006442 419 RSGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (645)
Q Consensus 419 ~~~~~~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------- 489 (645)
..+..+|+++|++++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 9 ~~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 9 HHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp --CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred cCCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 3466789999999999 8778999999999999999999999999999999999999999999999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ ..+++.+||.+|+.+.... . ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~--~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQN--YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGG--GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecC--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-hhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2456665 4577889999999875421 1 13457889999999 578899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999988754 5699999999999999999999999999985 466666543
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-44 Score=365.83 Aligned_cols=205 Identities=22% Similarity=0.351 Sum_probs=177.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------cch
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------~~~ 492 (645)
-++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 45699999999999889999999999999999999999999999999999999999999999998763 245
Q ss_pred hccchhhcCCCCCCHHHHHHhhhc--ccc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
++|+ ..+.+..|+.+|+..... ... .+++.++++.+++ .+..++++.+|||||||||+|||||+.+|++||
T Consensus 93 v~q~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 93 LPEE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp ECTT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EcCC--CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5554 345677899999976432 111 2457789999999 467899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 235 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKE 235 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHHH
Confidence 99999999999999999999765 4699999999999999999999999999985 466666543
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-44 Score=371.04 Aligned_cols=206 Identities=26% Similarity=0.346 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeC--C---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEE
Q 006442 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~ 164 (645)
+|+++|++|+|+ + +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999997 4 679999999999999999999999999999999999999999999998753 2599
Q ss_pred EEeccC-ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 165 ~v~Q~~-~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|++|++ ..++..||+||+...... . .......+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~-~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN---------------------------------------F-YPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT---------------------------------------T-CTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh---------------------------------------c-CCHHHHHHHHHHHH
Confidence 999996 455678999998532100 0 01112234567788
Q ss_pred hhcCCCc-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+ +.|+|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8899852 46789999999999999999999999999999999999999999999988774 2489999999999999
Q ss_pred HhhcCeEEEEcCceeEEeccChHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
..+||+++++++|++. +.|+..+
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~ 224 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRME 224 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999873 4565443
No 50
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-44 Score=368.52 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEEcCCCc-----------eE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~--~~p~~G~I~~~~~~~-----------~i 163 (645)
+|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999998 789999999987431 38
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.+++..||+||+....... ... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAK--------------LGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHH--------------HTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhh--------------ccc----------------------cCCHHHHHHHHHHHH
Confidence 99999998888899999985321100 000 001112234566788
Q ss_pred hhcCCCcccccccCCC-CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 006442 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l 319 (645)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+ +.|+|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 8899954678899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cCeEEEEcCceeEEeccChH
Q 006442 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (645)
Q Consensus 320 ~~~-~d~i~~l~~G~~~~~~g~~~ 342 (645)
..+ ||+|+++++|++. ..|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 988 5999999999984 456543
No 51
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-43 Score=377.97 Aligned_cols=203 Identities=27% Similarity=0.413 Sum_probs=179.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245565
Q ss_pred chhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.+..... ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 83 N--YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp S--CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 45778899999999864321 12457889999999 577899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~ 223 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVYD 223 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 467666543
No 52
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.5e-44 Score=366.16 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=175.5
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEEcCCCc-----------e
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~--~~p~~G~I~~~~~~~-----------~ 162 (645)
++|+++|++|+|+++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999987431 3
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.+++..|+.+|+....... ..... . ...+.....+++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~----------~~~~~-~---------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAV----------RSYRG-Q---------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHH----------HHGGG-C---------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhh----------hhhhc-c---------------------ccCCHHHHHHHHHHH
Confidence 999999998888899999985321100 00000 0 000111234567788
Q ss_pred chhcCCCcccccccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 006442 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (645)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~ 318 (645)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||+|||+.+++++.++|++ .|+|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 8999996556788887 5999999999999999999999999999999999999999998753 48999999999999
Q ss_pred HHhh-cCeEEEEcCceeEEeccChHH
Q 006442 319 LDQL-CTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 319 l~~~-~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+..+ ||+++++++|++. +.|+..+
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~ 251 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTL 251 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHH
Confidence 9886 9999999999984 4565443
No 53
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-43 Score=378.03 Aligned_cols=203 Identities=28% Similarity=0.394 Sum_probs=178.8
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999998762 245565
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... . ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 83 N--WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4 4577889999999876421 1 124578899999994 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~~ 223 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVYY 223 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 466666543
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-43 Score=358.07 Aligned_cols=200 Identities=26% Similarity=0.412 Sum_probs=174.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|++ +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4789999999975 49999999999 999999999999999999999999999999999998762 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+ ..+.+..|+.+|+.+.... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 78 D--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp S--CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred C--CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4 3466778999999875321 1234578899999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 216 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999998764 5699999999999999999999999999985 467666643
No 55
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=375.76 Aligned_cols=201 Identities=27% Similarity=0.425 Sum_probs=177.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++ +|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 999999999999999999999999999999999999999999999998762 346666
Q ss_pred chhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+ ..+++.+||.+|+.++... ...+++.++|+.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~--~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 N--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp T--CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred C--cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 4 4577889999999875421 1226788999999994 77899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++.
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999988754 5699999999999999999999999999985 46666654
No 56
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-43 Score=377.06 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=178.3
Q ss_pred EEEEEeeeeeeCCee--ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------------
Q 006442 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~--~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------------ 489 (645)
+|+++|++++|+++. +|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 999999999999999999999999999999999999999999999997652
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccc--c----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCC
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 562 (645)
.+|++|+ ..+++.+||.+|+.++.... . .+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 83 KIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp CEEEEETT--SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-GGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 2355554 45778899999998864321 1 3457889999999 57789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 563 ~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||||++|++|++.. .|+.+++.+
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~~ 230 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYD 230 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999988754 5699999999999999999999999999985 466666543
No 57
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.3e-43 Score=377.49 Aligned_cols=203 Identities=25% Similarity=0.405 Sum_probs=178.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------------- 489 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 589999999999888999999999999999999999999999999999999999999999997652
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhcc--c----cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.+|++|+ ..+++.+||.+|+.++... . ..+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|+
T Consensus 83 ig~v~Q~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 83 IAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp EEEECSC--CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-GGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEEeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-chHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2355554 4577889999999876421 1 12457889999999 577899999999999999999999999999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 229 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYD 229 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHh
Confidence 99999999999999999999988754 5699999999999999999999999999985 467666543
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-43 Score=377.31 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=175.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhcc
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q 495 (645)
+|+++|++++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 499999999999888999999999999999999999999999999999999999999999998762 245665
Q ss_pred chhhcCCCCCCHHHHHHhhhcc--cc----HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
+ ..+++.+||.+|+.++... .. .+++.++|+.+++ .+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 ~--~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 91 S--YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred C--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 4577889999999886421 11 2457889999999 578899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||||++|++|++.. .|+.+++..
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~~ 231 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYL 231 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999988754 5699999999999999999999999999985 466666543
No 59
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.5e-43 Score=367.69 Aligned_cols=205 Identities=21% Similarity=0.404 Sum_probs=174.3
Q ss_pred CcEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
...|+++||+|+|+ ++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34699999999996 578999999999999999999999999999999999999999999999998863 3
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~~ 560 (645)
+|++|+. .+ +..|+++|+.++......+++...++.+++.. ...++.+.+|||||||||+|||||++
T Consensus 131 ~~v~Q~~--~l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDT--VL-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSC--CC-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCC--cc-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 4566653 34 46799999998765555566666776666631 12234557899999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+|+||||||||++||+.++..+.+.|.+. +.|||+||||++++.. ||+|++|++|++++ .|+.+++++.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~~ 278 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLSR 278 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHhc
Confidence 99999999999999999999999999865 5699999999999987 99999999999986 5787777653
No 60
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-44 Score=358.03 Aligned_cols=191 Identities=23% Similarity=0.310 Sum_probs=164.7
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----ceEEEEecc
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQE 169 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----~~i~~v~Q~ 169 (645)
.++|+++|++++|++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 346999999999988 99999999999999999999999999999999999999999999998754 369999999
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+++..||+||+..... + ... ... ++++.++++.+|+.
T Consensus 87 ~~~~~~~tv~enl~~~~~---------------~------------------------~~~-~~~-~~~~~~~l~~~gl~ 125 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVAS---------------L------------------------YGV-KVN-KNEIMDALESVEVL 125 (214)
T ss_dssp CCCCTTSBHHHHHHHHHH---------------H------------------------TTC-CCC-HHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHHHH---------------h------------------------cCC-chH-HHHHHHHHHHcCCC
Confidence 988788899999853210 0 000 112 34566788889997
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i 326 (645)
. . ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||++|||++++..+||++
T Consensus 126 ~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 126 D-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp C-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred c-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4 4 888999999999999999999999999999999999999999999887743 4789999999999999999998
Q ss_pred EEE
Q 006442 327 VET 329 (645)
Q Consensus 327 ~~l 329 (645)
+.+
T Consensus 204 ~~~ 206 (214)
T 1sgw_A 204 HKY 206 (214)
T ss_dssp GGG
T ss_pred EEe
Confidence 854
No 61
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-43 Score=361.27 Aligned_cols=205 Identities=28% Similarity=0.354 Sum_probs=177.1
Q ss_pred EEEEEeeeeeeC--C---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cc
Q 006442 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y~--~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~ 491 (645)
+|+++|++++|+ + +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 67999999999999999999999999999999999999999999999998752 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhcc-----ccHHHHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHHHccCCCeE
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~-----~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 565 (645)
|++|+.. ...+..|+.+|+...... ...+++.++++.+|+.. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGG-GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccch-hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6666532 234578999999875321 22456888999999942 6779999999999999999999999999999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.+
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 999999999999999999999765 4699999999999999999999999999985 466666554
No 62
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.8e-43 Score=360.81 Aligned_cols=210 Identities=22% Similarity=0.367 Sum_probs=167.7
Q ss_pred ccEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------e
Q 006442 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (645)
Q Consensus 96 ~~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~ 162 (645)
.+|+++|++|+|++ .++|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh
Q 006442 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (645)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (645)
|+|++|++.++. .||+||+....... ... +.+.... ....+.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~~---~~~~~~~-------------------------------~~~~~~~~ 138 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRT-PTM---EEITAVA-------------------------------MESGAHDF 138 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSC-CCH---HHHHHHH-------------------------------HHHTCHHH
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccC-ChH---HHHHHHH-------------------------------HHHhHHHH
Confidence 999999998765 69999996432100 000 0000000 00112234
Q ss_pred chhc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 006442 243 MPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (645)
Q Consensus 243 l~~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~ 316 (645)
+..+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|+|||+||||+
T Consensus 139 l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 139 ISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 4444 453 456788999999999999999999999999999999999999999999988743 388999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
+++.. ||+|++|++|++. ..|+..+.
T Consensus 218 ~~~~~-~d~v~~l~~G~i~-~~g~~~~l 243 (271)
T 2ixe_A 218 SLAER-AHHILFLKEGSVC-EQGTHLQL 243 (271)
T ss_dssp HHHTT-CSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHh-CCEEEEEECCEEE-EECCHHHH
Confidence 99875 9999999999974 55665544
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.3e-43 Score=365.25 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=166.4
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
..|+++||+|+|+ +.++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.+. .||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3599999999995 56799999999999999999999999999999999999999999999987532 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
||+|++.++ ..||+||+..+.... . .+.+..+++.+ .+...+..+-.
T Consensus 132 ~v~Q~~~lf-~~Tv~eNi~~~~~~~-~----~~~~~~~~~~~---------------------------~l~~~i~~lp~ 178 (306)
T 3nh6_A 132 VVPQDTVLF-NDTIADNIRYGRVTA-G----NDEVEAAAQAA---------------------------GIHDAIMAFPE 178 (306)
T ss_dssp EECSSCCCC-SEEHHHHHHTTSTTC-C----HHHHHHHHHHH---------------------------TCHHHHHHSTT
T ss_pred EEecCCccC-cccHHHHHHhhcccC-C----HHHHHHHHHHh---------------------------CcHHHHHhccc
Confidence 999999875 679999997432110 0 00111111100 01111111111
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+. ....+.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+||||++.+..
T Consensus 179 --gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~- 254 (306)
T 3nh6_A 179 --GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN- 254 (306)
T ss_dssp --GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-
T ss_pred --hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-
Confidence 232 234566789999999999999999999999999999999999999999888753 47899999999999987
Q ss_pred cCeEEEEcCceeEEeccChHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|++|++|++ ...|+..+..
T Consensus 255 aD~i~vl~~G~i-v~~G~~~el~ 276 (306)
T 3nh6_A 255 ADQILVIKDGCI-VERGRHEALL 276 (306)
T ss_dssp CSEEEEEETTEE-EEEECHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4567766554
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.6e-43 Score=358.07 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=162.5
Q ss_pred cEEEEeEEEEe--CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEE
Q 006442 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (645)
Q Consensus 97 ~i~i~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~ 164 (645)
.|+++|++|+| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 35779999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.++. .||+||+....... . .+++...++ .. . +.+.+.
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~----~~~~~~~l~--------------~~-------------~----l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S----VEKVIYAAK--------------LA-------------G----AHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C----HHHHHHHHH--------------HH-------------T----CHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C----HHHHHHHHH--------------Hh-------------C----hHHHHH
Confidence 9999998764 69999985321100 0 000000000 00 0 011122
Q ss_pred hc--CCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 006442 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (645)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~ 320 (645)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|+|||+||||++.+.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 21 232 345566899999999999999999999999999999999999999999887753 4899999999999986
Q ss_pred hhcCeEEEEcCceeEEeccChHHH
Q 006442 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
. ||+|++|++|++. ..|+..+.
T Consensus 209 ~-~d~v~~l~~G~i~-~~g~~~~l 230 (247)
T 2ff7_A 209 N-ADRIIVMEKGKIV-EQGKHKEL 230 (247)
T ss_dssp T-SSEEEEEETTEEE-EEECHHHH
T ss_pred h-CCEEEEEECCEEE-EECCHHHH
Confidence 5 9999999999984 45665543
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.8e-43 Score=357.67 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEEeeeeeeCC----eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-------cc-
Q 006442 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PN- 491 (645)
Q Consensus 424 ~i~~~~v~~~y~~----~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-------~~- 491 (645)
+|+++|++++|++ +.+|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 99999999997752 35
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhc--cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 569 (645)
|++|+. .+ ..|+.+|+..... ....+++.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~--~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAY--EI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGS--CT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCC--cc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 666653 33 7899999987542 23456788999999995267799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCC-EEEEEeCCeEEeeCCChhHHH
Q 006442 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVN-RVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d-~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||++||+.+++.+.+.|+++..|||+||||++++.++|| ++++|++|+++. .|+.+++.
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999875699999999999999999 999999999985 57777665
No 66
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-43 Score=359.47 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEE-
Q 006442 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (645)
Q Consensus 97 ~i~i~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~- 164 (645)
+|+++|++++|++ +++|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 3899999999987 789999999999 9999999999999999999999999 999999998742 2699
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.+ ..||+||+..... +. ...++++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~~----------------------------~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------LK----------------------------GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------HT----------------------------CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------hc----------------------------chHHHHHHHHHH
Confidence 99999876 8899999853100 00 011234567788
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (645)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++...|||++|||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 88986356789999999999999999999999999999999999999999999999987643499999999999999999
Q ss_pred -eEEEEcCceeEEeccCh
Q 006442 325 -KIVETEMGVSRTYEGNY 341 (645)
Q Consensus 325 -~i~~l~~G~~~~~~g~~ 341 (645)
+++++++|++. ..|+.
T Consensus 194 ~~i~~l~~G~i~-~~g~~ 210 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISV 210 (263)
T ss_dssp SEEEEEETTEEE-EEEEH
T ss_pred ceEEEEECCEEE-EecCH
Confidence 99999999874 45654
No 67
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-42 Score=354.74 Aligned_cols=197 Identities=25% Similarity=0.475 Sum_probs=172.3
Q ss_pred EEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 424 ~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+.. ..+|++|+. .+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 699999999998 78899999999999999999999999999999999999999999998532 356777753 455
Q ss_pred CCCCHHHHHHhhhcc----------ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 503 LDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+..|+.+|+...... ...+++.++++.+|+ .+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-GGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-hHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 678999999875321 112457889999999 467899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
+||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+ +. .|+.+++
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~-~g~~~~~ 215 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK-FGETRNI 215 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE-EEEHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee-cCCHHHH
Confidence 99999999999998764 5699999999999999999999999999 54 4666655
No 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-42 Score=349.49 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=160.1
Q ss_pred ccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccC
Q 006442 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (645)
Q Consensus 96 ~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (645)
.+|+++|++|+|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|+++++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 46799999999999999999999999999999999999999999999986 599999999886
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC-ccc
Q 006442 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (645)
Q Consensus 174 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~ 252 (645)
+ .||+||+....... . .+....++. ..+ .+.+..+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~-----~~~~~~~~~---------------------------~~l----~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E-----YRYRSVIKA---------------------------CQL----EEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H-----HHHHHHHHH---------------------------TTC----HHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h-----HHHHHHHHH---------------------------hCc----HHHHHhCccccccc
Confidence 6 49999996432100 0 000000000 000 1111221110 012
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~~--~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+. +++ .++|||++|||++++. .||+++++
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3445789999999999999999999999999999999999999999986 433 4789999999999986 59999999
Q ss_pred cCceeEEeccChHHH
Q 006442 330 EMGVSRTYEGNYSQY 344 (645)
Q Consensus 330 ~~G~~~~~~g~~~~~ 344 (645)
++|++. ..|+..+.
T Consensus 203 ~~G~i~-~~g~~~~~ 216 (229)
T 2pze_A 203 HEGSSY-FYGTFSEL 216 (229)
T ss_dssp ETTEEE-EEECHHHH
T ss_pred ECCEEE-EECCHHHH
Confidence 999984 55665543
No 69
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.9e-43 Score=356.79 Aligned_cols=196 Identities=28% Similarity=0.343 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~~v 166 (645)
+|+++|++|+ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|.+. .|+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999987 6999999999999999999999999999999999999999 9999987532 49999
Q ss_pred eccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc
Q 006442 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (645)
Q Consensus 167 ~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (645)
+|++.+++..||+||+...... . .. ++++.++++.+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~------------------------------------------~-~~-~~~~~~~l~~~ 114 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHD------------------------------------------K-TR-TELLNDVAGAL 114 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSS------------------------------------------T-TC-HHHHHHHHHHT
T ss_pred CCCCccCCCCcHHHHHHHhhcc------------------------------------------C-Cc-HHHHHHHHHHc
Confidence 9999887788999998531000 0 01 34456778888
Q ss_pred CCCcccccccCCCCChHHHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH
Q 006442 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR 316 (645)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~-------iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~ 316 (645)
|+. +..++++.+|||||||||+|||||+.+|+ +|||||||+|||+.+++.+.++|++ .|+|||++|||+
T Consensus 115 ~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp TCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 885 57788999999999999999999999999 9999999999999999999887743 489999999999
Q ss_pred HHHHhhcCeEEEEcCceeEEeccChHH
Q 006442 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~g~~~~ 343 (645)
+++..+||+++++++|++. +.|+..+
T Consensus 194 ~~~~~~~d~v~~l~~G~i~-~~g~~~~ 219 (249)
T 2qi9_C 194 NHTLRHAHRAWLLKGGKML-ASGRREE 219 (249)
T ss_dssp HHHHHHCSEEEEEETTEEE-EEEEHHH
T ss_pred HHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999874 4565443
No 70
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-42 Score=352.91 Aligned_cols=201 Identities=26% Similarity=0.480 Sum_probs=169.3
Q ss_pred EEEEEeeeeee--CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cc
Q 006442 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (645)
Q Consensus 424 ~i~~~~v~~~y--~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~ 491 (645)
-|+++||+++| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 3578999999999999999999999999999999999999999999999998763 23
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHHHcc
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAral~~ 560 (645)
|++|+ +.++ ..|+.+|+.........+++..+++.+++. +..+ +++.+|||||||||+|||||++
T Consensus 87 ~v~Q~--~~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQD--NVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSS--CCCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCC--Cccc-cccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 45554 2343 469999998754333445667777777773 3333 4568999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 5699999999999865 99999999999985 467666543
No 71
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.6e-43 Score=355.08 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=168.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCeeEEEECceecc-----------c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL-----------P 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~-----------~ 490 (645)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++. .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 69999999999988999999999999999999999999999999999999 7899999999998762 1
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhc---c--cc----HHHHHHHHhhcCCChhhhccCcCc-CCHhHHHHHHHHHHHcc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVK 560 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~-LSgGqkqrv~lAral~~ 560 (645)
+|++|+ +.+++..|+.+|+..... . .. .+.+.++++.+|+..+..++++.+ |||||||||+|||||+.
T Consensus 83 ~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FLAFQY--PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CCCCCC--CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EEeccC--CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 234443 345667899999976431 1 11 245778999999954677899999 99999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChh
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~ 626 (645)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+ |||+++|++|+++. .|+.+
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 99999999999999999999999999875 35999999999999988 59999999999985 45555
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-42 Score=357.44 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=173.2
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~---------- 489 (645)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999988999999999999999999999999999999999999 4689999999998752
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhc------c---cc----HHHHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAE------D---WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAF 554 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~------~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~l 554 (645)
.+|++|+ ..+.+..|+.+|+..... . .. .+.+.++|+.+|+..+..++++. +|||||||||+|
T Consensus 98 ~i~~v~Q~--~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQY--PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSS--CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccC--ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1234443 345677899999865321 0 11 23577899999996456788887 599999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-CCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ |||+++|++|+++. .|+.++...
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 254 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLVKQ 254 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHHhh
Confidence 99999999999999999999999999999999876 35999999999999886 89999999999985 466666543
No 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.5e-43 Score=352.22 Aligned_cols=202 Identities=19% Similarity=0.344 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 97 ~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
+|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 599999999997 46799999999999999999999999999999999999999999999986 59999999875 6
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc----
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA---- 250 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~---- 250 (645)
..||+||+........ ...+.+ . ...++++.++..+
T Consensus 79 ~~tv~enl~~~~~~~~---~~~~~~---~----------------------------------~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 79 NDSLRENILFGCQLEE---PYYRSV---I----------------------------------QACALLPDLEILPSGDR 118 (237)
T ss_dssp SEEHHHHHHTTSCCCT---THHHHH---H----------------------------------HHTTCHHHHTTSTTGGG
T ss_pred CcCHHHHhhCccccCH---HHHHHH---H----------------------------------HHHhhHHHHHhcccccc
Confidence 7899999863211000 000000 0 0001111222211
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEecCHHHHHhhcCe
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG-----KQDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~-----~~g~tvIivsHd~~~l~~~~d~ 325 (645)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|. ..|+|||+||||++++. .||+
T Consensus 119 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp SEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCE
Confidence 12467789999999999999999999999999999999999999999999883 24889999999999985 6999
Q ss_pred EEEEcCceeEEeccChHHH
Q 006442 326 IVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 326 i~~l~~G~~~~~~g~~~~~ 344 (645)
++++++|++. ..|+..+.
T Consensus 198 v~~l~~G~i~-~~g~~~~~ 215 (237)
T 2cbz_A 198 IIVMSGGKIS-EMGSYQEL 215 (237)
T ss_dssp EEEEETTEEE-EEECHHHH
T ss_pred EEEEeCCEEE-EeCCHHHH
Confidence 9999999984 55766554
No 74
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.4e-42 Score=355.59 Aligned_cols=203 Identities=22% Similarity=0.402 Sum_probs=169.7
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
..+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 347999999999986 68999999999999999999999999999999999999999999999998763
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccH-H---------HHHHHHhhc--CCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
.+|++|+. .++ ..|+.+|+.+....... . .+.++++.+ |+ ....++++.+|||||||||+|||
T Consensus 94 ~i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl-~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 94 QVAAVGQEP--LLF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY-DTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HEEEECSSC--CCC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGG-GSBCCGGGTTSCHHHHHHHHHHH
T ss_pred cEEEEecCC--ccc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcch-hhhhcCCcCCCCHHHHHHHHHHH
Confidence 23555543 343 46999999875322111 1 123456666 55 34567889999999999999999
Q ss_pred HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 557 al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||+|++|++|+++. .|+.+++.+
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999999875 3599999999999875 99999999999985 477776654
No 75
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5e-43 Score=355.42 Aligned_cols=201 Identities=20% Similarity=0.347 Sum_probs=161.0
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceEEE
Q 006442 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (645)
Q Consensus 97 ~i~i~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i~~ 165 (645)
+|+++|++|+| ++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 38999999999 56789999999999999999999999999999999999999999999998732 25999
Q ss_pred EeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 166 v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
++|++.++. .||+||+........ . ++++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~------------------~--------------------------~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDY------------------T--------------------------DEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCS------------------C--------------------------HHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccCCC------------------C--------------------------HHHHHHHHHH
Confidence 999998755 599999853210000 0 0111122222
Q ss_pred cCCCc----------ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 006442 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (645)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivs 313 (645)
+++.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++ .|+|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 233456789999999999999999999999999999999999998888877643 489999999
Q ss_pred cCHHHHHhhcCeEEEEcCceeEEeccChHHH
Q 006442 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
||++++. .||+|+++++|++ ...|+..+.
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~ 224 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNEL 224 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHH
Confidence 9999886 5999999999997 356765544
No 76
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2e-42 Score=351.04 Aligned_cols=201 Identities=20% Similarity=0.416 Sum_probs=170.0
Q ss_pred EEEEEeeeeee-CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cch
Q 006442 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (645)
Q Consensus 424 ~i~~~~v~~~y-~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~ 492 (645)
+|+++|++++| +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 5678999999999999999999999999999999999999999999999998752 235
Q ss_pred hccchhhcCCCCCCHHHHHHhh-hccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHHHcc
Q 006442 493 FEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKFMVK 560 (645)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~v~~~-~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAral~~ 560 (645)
++|+. .++ ..|+.+|+... ......+++..+++.+++. +..+ +++.+|||||||||+|||||++
T Consensus 81 v~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDS--AIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSS--CCC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCC--ccc-cccHHHHHhhhccCCCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55543 343 46999999875 2233445677788888874 3333 4567999999999999999999
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++. .|||+++|++|+++. .|+.+++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999998865 569999999999986 599999999999974 578777654
No 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.1e-42 Score=347.52 Aligned_cols=197 Identities=25% Similarity=0.408 Sum_probs=172.1
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------cchh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~~~~ 493 (645)
+|+++|++++ .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++. .+|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6999999987 6899999999999999999999999999999999999999 99999998762 2455
Q ss_pred ccchhhcCCCCCCHHHHHHhhhc-cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC-------eE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST-------LL 565 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~-------lL 565 (645)
+|+. .+++..|+.||+..... ....+.+.++++.+++ .+..++++.+|||||||||+|||||+.+|+ +|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC-GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC-hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 5543 45567899999987531 1125668889999999 467899999999999999999999999999 99
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 566 lLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999765 4699999999999999999999999999985 46666553
No 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.6e-42 Score=349.89 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=159.6
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 97 ~i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
+|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.+ ..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 5999999999976 3699999999999999999999999999999999999987 8999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|++.++ ..||+||+....... . .+.+.+.++. . .+...+..+-
T Consensus 96 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~l~~------------------------~---~l~~~~~~l~ 142 (260)
T 2ghi_A 96 GIVPQDTILF-NETIKYNILYGKLDA-T----DEEVIKATKS------------------------A---QLYDFIEALP 142 (260)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTCTTC-C----HHHHHHHHHH------------------------T---TCHHHHHTST
T ss_pred EEEcCCCccc-ccCHHHHHhccCCCC-C----HHHHHHHHHH------------------------h---CCHHHHHhcc
Confidence 9999999876 469999986421100 0 0000000000 0 0000010000
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. ++. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .++|||+||||++++.
T Consensus 143 ~--~~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~- 218 (260)
T 2ghi_A 143 K--KWD-TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS- 218 (260)
T ss_dssp T--GGG-CEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-
T ss_pred c--ccc-ccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-
Confidence 0 000 123466899999999999999999999999999999999999999999887743 4789999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|++|++|++. ..|+..+..
T Consensus 219 ~~d~i~~l~~G~i~-~~g~~~~l~ 241 (260)
T 2ghi_A 219 SAESIILLNKGKIV-EKGTHKDLL 241 (260)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999984 557665543
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-42 Score=343.52 Aligned_cols=191 Identities=26% Similarity=0.398 Sum_probs=165.0
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----cchhccc
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQN 496 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----~~~~~q~ 496 (645)
..+|+++|++++|++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 357999999999988 9999999999999999999999999999999999999999999999998752 3456654
Q ss_pred hhhcCCCCCCHHHHHHhhhc----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 497 QAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
. .+++..|+.+|+..... ....+++.++++.+++. +. ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 87 ~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 87 I--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp C--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred C--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 3 45667899999987532 12345688899999995 55 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 573 HLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 573 ~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+||+.++..+.+.|+++ +.|||+||||++++..+||+++.+ .|+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999865 359999999999999999998755 3444
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.9e-41 Score=337.71 Aligned_cols=199 Identities=23% Similarity=0.378 Sum_probs=162.6
Q ss_pred cEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhc
Q 006442 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (645)
Q Consensus 423 ~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~ 500 (645)
.+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~--~ 79 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFS--W 79 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCC--c
Confidence 4699999999995 47899999999999999999999999999999999999999999999998 357777764 3
Q ss_pred CCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC
Q 006442 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 570 (645)
+++ .|+.+|+..... .........++.+++... ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 80 IMP-GTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCS-BCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred ccC-CCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 434 599999987532 122223344444444211 12334689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 571 TNHLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|++||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999974 443 469999999999986 499999999999985 477776543
No 81
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.9e-41 Score=345.62 Aligned_cols=202 Identities=20% Similarity=0.363 Sum_probs=168.1
Q ss_pred cEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 423 ~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
.+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 4699999999999999999999999999999999999987 899999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+. .++ ..|+.+|+..+......+++.+.++.+++.... .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDT--ILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSC--CCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCC--ccc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 23555543 343 469999998754323345566777777763211 23567899999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999865 459999999999986 499999999999985 477776654
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=366.08 Aligned_cols=199 Identities=21% Similarity=0.354 Sum_probs=165.9
Q ss_pred ccEEEEeEEEEe--CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
..|+++|++|+| ++.++|+||||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.+ ..|
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 359999999999 56789999999999999999999999999999999999998 89999998853 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+||+|++.+++ .||+||+..... ...+++.+++
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~~----------------------------------------------~~~~~v~~~l 129 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNAA----------------------------------------------HSDQEIWKVA 129 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTCC----------------------------------------------SCHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhccc----------------------------------------------cCHHHHHHHH
Confidence 99999998765 699999841100 0012334455
Q ss_pred hhcCCCcccccccCCC-----------CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 006442 244 PELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~-----------LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvI 310 (645)
+.+++. +..++.+.+ |||||||||+|||||+.+|+||||||||++||+..+..+.+.|++ .++|+|
T Consensus 130 ~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi 208 (390)
T 3gd7_A 130 DEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVI 208 (390)
T ss_dssp HHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEE
T ss_pred HHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 566664 456666666 999999999999999999999999999999999999999998864 478999
Q ss_pred EEecCHHHHHhhcCeEEEEcCceeEEeccChHHHH
Q 006442 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
+||||++.+. .||+|++|++|++. ..|+..+.+
T Consensus 209 ~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 209 LCEARIEAML-ECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999998665 59999999999984 557765544
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=4.6e-44 Score=402.23 Aligned_cols=381 Identities=11% Similarity=0.080 Sum_probs=241.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeE-EEECCcEEEEECCCCccHHHHHHH--HHcCCCCCccEEEEcCCCc---------eEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~--l~G~~~p~~G~I~~~~~~~---------~i~ 164 (645)
+++.+++.+..++.++|++++| .|++|++++|+||||||||||+++ ++|+++|++|.|++++... .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3455556555567889999999 999999999999999999999999 7899999999999875431 123
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|++.... |+. .+.... .....+++.
T Consensus 92 ~~~q~~~~~~------~l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEG------KLF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTT------SEE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccC------cEE---------------------------------------------EEecCc-ccchhhhhc
Confidence 3333221100 000 000000 000011222
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~-----LD~~~~~~l~~~L---~~~g~tvIivsHd~ 316 (645)
.+++. +..++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|+|||++||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 23322 2333444555555 5889999999984 6888888887765 44699999999999
Q ss_pred HHH---------HhhcCeEEEEcCceeEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 006442 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (645)
Q Consensus 317 ~~l---------~~~~d~i~~l~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (645)
+++ ..+||+|++|++|.. .|....++.. ..++. ...
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~--------------------------~k~r~-~~~----- 230 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI--------------------------LKLRG-TSH----- 230 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--------------------------EEETT-SCC-----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--------------------------EECCC-CCC-----
Confidence 984 566999999988432 1110000000 00000 000
Q ss_pred HHHHHHHHHHhhhhcccc--cccceEEeccCCCCCCCcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHH
Q 006442 388 AEKKLERLQEEEQIEKPF--QRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKS 464 (645)
Q Consensus 388 ~~~~l~rl~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKS 464 (645)
.....+. ...... .+|.......+.+++++++..|++ ..+|.+ .|++|++++|+|+||||||
T Consensus 231 -----------~~~~~~~~i~~~gi~-v~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGKS 295 (525)
T 1tf7_A 231 -----------MKGEYPFTITDHGIN-IFPLGAMRLTQRSSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGKT 295 (525)
T ss_dssp -----------CCSEEEEEEETTEEE-ECCTTTCCSCCCCCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSHH
T ss_pred -----------CCceEEEEEcCCCEE-EEeccccccccccccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCHH
Confidence 0000000 000011 112111122345677888877754 234444 8999999999999999999
Q ss_pred HHHHHHHcCCCCCeeE--EEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcC
Q 006442 465 TLLKLIMGLEKPRGGE--VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542 (645)
Q Consensus 465 TLl~~l~g~~~p~~G~--i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (645)
||++.++|..+|. |. +.+.+.+. +. ++..+.... .+...+ +...|+ ....+.++.
T Consensus 296 TLl~~l~g~~~~~-G~~vi~~~~ee~-~~--------------~l~~~~~~~--g~~~~~----~~~~g~-~~~~~~~p~ 352 (525)
T 1tf7_A 296 LLVSRFVENACAN-KERAILFAYEES-RA--------------QLLRNAYSW--GMDFEE----MERQNL-LKIVCAYPE 352 (525)
T ss_dssp HHHHHHHHHHHTT-TCCEEEEESSSC-HH--------------HHHHHHHTT--SCCHHH----HHHTTS-EEECCCCGG
T ss_pred HHHHHHHHHHHhC-CCCEEEEEEeCC-HH--------------HHHHHHHHc--CCCHHH----HHhCCC-EEEEEeccc
Confidence 9999999998875 43 33332211 00 111111100 111111 223343 244577888
Q ss_pred cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH-----HHHHHHHHHH---hcCceEEEEecCH----------HHHH
Q 006442 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-----SKEMLEEAIS---EYKGTVITVSHDR----------YFVK 604 (645)
Q Consensus 543 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~-----s~~~l~~~l~---~~~~tvi~vsHd~----------~~i~ 604 (645)
+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++++ +.+.|||+||||. ..+.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCT
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccc
Confidence 99999999999999999999999999 99999999 8888777665 4467999999999 7888
Q ss_pred hhCCEEEEEeCCe
Q 006442 605 QIVNRVVEVKGSN 617 (645)
Q Consensus 605 ~~~d~v~~l~~g~ 617 (645)
.+||+|++|++|+
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 8999999998776
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=341.34 Aligned_cols=198 Identities=21% Similarity=0.385 Sum_probs=163.4
Q ss_pred EEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcC
Q 006442 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (645)
Q Consensus 424 ~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l 501 (645)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQA--WI 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSC--CC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCC--cC
Confidence 489999999997 47899999999999999999999999999999999999999999999998 367887764 23
Q ss_pred CCCCCHHHHHHhhhccccHHHHHHHHhhcCCC------h----hhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 502 ~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+..|+.+|+....... .......++.+++. . ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 -~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 -QNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp -CSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred -CCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5789999998754211 11222333333321 1 1246788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 572 NHLDIPSKEMLEEAIS---EY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++||+.++..+.+.|. +. +.|||+||||++++. .||++++|++|+++. .|+.+++.+
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHhh
Confidence 9999999999999984 32 469999999999985 699999999999985 477777654
No 85
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=358.26 Aligned_cols=205 Identities=18% Similarity=0.287 Sum_probs=175.0
Q ss_pred CCCCCcEEEEEeeeeee--CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc------
Q 006442 418 GRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (645)
Q Consensus 418 ~~~~~~~i~~~~v~~~y--~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~------ 489 (645)
.|+....|+++||+++| +++.+|+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|.++.
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 34555679999999999 56789999999999999999999999999999999999998 9999999998763
Q ss_pred ----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCc-----------CCHhHHHHHHH
Q 006442 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAF 554 (645)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqrv~l 554 (645)
.+|++|+. .++ ..|+.+|+.... ....+++.++++.+++ .+..++.+.+ |||||||||+|
T Consensus 92 ~rr~ig~v~Q~~--~lf-~~tv~enl~~~~-~~~~~~v~~~l~~~~L-~~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 92 WRKAFGVIPQKV--FIF-SGTFRKNLDPNA-AHSDQEIWKVADEVGL-RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp HHHTEEEESCCC--CCC-SEEHHHHHCTTC-CSCHHHHHHHHHHTTC-HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred HhCCEEEEcCCc--ccC-ccCHHHHhhhcc-ccCHHHHHHHHHHhCC-HHHHhhcccccccccccccccCCHHHHHHHHH
Confidence 23555543 343 479999996432 2345678889999999 5778899888 99999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||||++|++|+|... |..+++..
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~-g~~~el~~ 242 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY-DSILELYH 242 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE-SSHHHHHH
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE-CCHHHHHh
Confidence 99999999999999999999999999999999875 459999999987665 5999999999999864 66666543
No 86
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6e-40 Score=340.34 Aligned_cols=203 Identities=25% Similarity=0.370 Sum_probs=145.9
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
+.|+++|++|.+ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 359999999863 5799999999999999999999999999999999999999999999976 5999999998765
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC-ccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~-~~~~~ 254 (645)
.||+||+. .+.... ......++. . .+. +.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~~------~~~~~~~~~------------------------~---~l~----~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYDE------YRYRSVIKA------------------------C---QLE----EDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCCH------HHHHHHHHH------------------------T---TCH----HHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccch------HHHHHHHHH------------------------h---ChH----HHHHhccccccchhc
Confidence 59999986 321000 000000000 0 001 111111110 01233
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L-~~--~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
+.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.+ ++ .|+|||+||||++++. .||+|+++++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 457899999999999999999999999999999999999999999863 32 4889999999999986 5999999999
Q ss_pred ceeEEeccChHHH
Q 006442 332 GVSRTYEGNYSQY 344 (645)
Q Consensus 332 G~~~~~~g~~~~~ 344 (645)
|++. ..|+..+.
T Consensus 234 G~i~-~~g~~~~l 245 (290)
T 2bbs_A 234 GSSY-FYGTFSEL 245 (290)
T ss_dssp TEEE-EEECHHHH
T ss_pred CeEE-EeCCHHHH
Confidence 9984 55766554
No 87
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-39 Score=369.13 Aligned_cols=213 Identities=24% Similarity=0.336 Sum_probs=166.9
Q ss_pred ccEEEEeEEEEeC--CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4699999999995 35799999999999999999999999999999999999999999999998643 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+||+|+++++ +.||+||+..+.... . .+++.++.+.+ .+.+.+..+-
T Consensus 420 ~~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~~~---------------------------~~~~~i~~l~ 466 (587)
T 3qf4_A 420 SAVPQETVLF-SGTIKENLKWGREDA-T----DDEIVEAAKIA---------------------------QIHDFIISLP 466 (587)
T ss_dssp EEECSSCCCC-SEEHHHHHTTTCSSC-C----HHHHHHHHHHT---------------------------TCHHHHHTSS
T ss_pred EEECCCCcCc-CccHHHHHhccCCCC-C----HHHHHHHHHHh---------------------------CcHHHHHhcc
Confidence 9999999885 569999996321100 0 00111111100 1111111111
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+. ...++.+.+||||||||++|||||+++|+||||||||++||+++.+.+.+.|++ .|+|+|+||||++.+.
T Consensus 467 ~--g~~-~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~- 542 (587)
T 3qf4_A 467 E--GYD-SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL- 542 (587)
T ss_dssp S--GGG-CEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-
T ss_pred c--chh-hHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-
Confidence 1 333 234566899999999999999999999999999999999999999999887753 5899999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~~ 346 (645)
.||+|+++++|++ ...|++++...
T Consensus 543 ~~d~i~vl~~G~i-~~~g~~~el~~ 566 (587)
T 3qf4_A 543 LADKILVLHEGKV-AGFGTHKELLE 566 (587)
T ss_dssp TSSEEEEEETTEE-EEEECHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHh
Confidence 7999999999998 45677766543
No 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.8e-39 Score=364.37 Aligned_cols=203 Identities=23% Similarity=0.445 Sum_probs=173.8
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 67999999999999999999999999999999999999999999999998762
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhh-ccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+. .+ ++.|+.||+..+. .....+++.++++.+++. +..+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~~--~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQNV--HL-FNDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCCC--cc-ccccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 24555543 34 3569999998865 344566788888888773 3333 3457999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 469999999999997 599999999999985 577777654
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.2e-39 Score=364.16 Aligned_cols=204 Identities=25% Similarity=0.433 Sum_probs=174.6
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 456999999999973 68999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhh-ccccHHHHHHHHhhcCCChhhhc-----------cCcCcCCHhHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGqkqrv~lAra 557 (645)
.+|++|+ +.+ ++.|+.||+..+. .....+++.++++.+++. +..+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQN--VHL-FNDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSS--CCC-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccC--CcC-CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2355554 334 3569999999865 344566788888888873 3333 3457999999999999999
Q ss_pred HccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 558 l~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
|+++|++|||||||++||+.+++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|+.+++.+.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~~ 568 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 568 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHHc
Confidence 99999999999999999999999999999865 569999999999986 599999999999985 5788877653
No 90
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-39 Score=367.78 Aligned_cols=203 Identities=21% Similarity=0.385 Sum_probs=173.4
Q ss_pred CcEEEEEeeeeeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------c
Q 006442 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----------~ 490 (645)
.+.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 345999999999974 67999999999999999999999999999999999999999999999998873 2
Q ss_pred chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCc-----------CcCCHhHHHHHHHHHHHc
Q 006442 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV-----------SLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-----------~~LSgGqkqrv~lAral~ 559 (645)
+|++|+ +.+ ++.|++||+..+......+++.+.++.+++. +..++.+ .+||||||||++|||||+
T Consensus 432 ~~v~Q~--~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQD--TIL-FSTTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTT--CCC-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCC--Ccc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 455554 334 4679999999875444555677777777763 3333333 689999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
++|++|||||||++||+.++..+.+.|.+. +.|+|+||||++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999865 5699999999999976 99999999999986 588887754
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-39 Score=370.13 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=164.2
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45999999999964 4699999999999999999999999999999999999999999999987532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
|||+|+|+++ +.||+||+..+..... .+++.++++.+ .+.+.+..+-
T Consensus 418 ~~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~---------------------------~~~~~~~~lp 464 (578)
T 4a82_A 418 GLVQQDNILF-SDTVKENILLGRPTAT-----DEEVVEAAKMA---------------------------NAHDFIMNLP 464 (578)
T ss_dssp EEECSSCCCC-SSBHHHHHGGGCSSCC-----HHHHHHHHHHT---------------------------TCHHHHHTST
T ss_pred EEEeCCCccC-cccHHHHHhcCCCCCC-----HHHHHHHHHHh---------------------------CcHHHHHhCc
Confidence 9999999885 4599999964321100 00111111110 0011111111
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+.+ ...+.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+++ .++|+|+||||++.+..
T Consensus 465 ~--g~~t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 465 Q--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541 (578)
T ss_dssp T--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred c--hhhh-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 1 2222 23345689999999999999999999999999999999999999999887743 57899999999999865
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|+++++|++ ...|+.++..
T Consensus 542 -~d~i~~l~~G~i-~~~g~~~el~ 563 (578)
T 4a82_A 542 -ADKIVVIENGHI-VETGTHRELI 563 (578)
T ss_dssp -CSEEEEEETTEE-EEEECHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4567766543
No 92
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-39 Score=364.62 Aligned_cols=205 Identities=23% Similarity=0.369 Sum_probs=173.5
Q ss_pred CcEEEEEeeeeeeC--CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~--~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 44699999999995 467999999999999999999999999999999999999999999999998763
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHHc
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMV 559 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral~ 559 (645)
.+|++|+ +.+ ++.|++||+..+......+++.+.++..++.. ...++++.+||||||||++|||||+
T Consensus 419 i~~v~Q~--~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQE--TVL-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSS--CCC-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCC--CcC-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 2455554 334 46699999987765555556666666655421 1235667899999999999999999
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
++|++|||||||++||+++++.+.+.|++. +.|+|+||||++.+. .||||++|++|++++ .|+++++.+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 999999999999999999999999999865 469999999999986 699999999999986 5888877653
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.6e-39 Score=366.64 Aligned_cols=213 Identities=22% Similarity=0.364 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------ceE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------~~i 163 (645)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999975 679999999999999999999999999999999999999999999998743 259
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+.+.++++-
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~~---------------------------~l~~~~~~~p 467 (582)
T 3b5x_A 420 ALVSQNVHLFN-DTIANNIAYAAEGEYT----REQIEQAARQA---------------------------HAMEFIENMP 467 (582)
T ss_pred EEEcCCCcccc-ccHHHHHhccCCCCCC----HHHHHHHHHHC---------------------------CCHHHHHhCc
Confidence 99999998854 6999999643200000 01111111110 0111111110
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
-|+.+ ...+.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+.
T Consensus 468 --~g~~t-~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b5x_A 468 --QGLDT-VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE- 543 (582)
T ss_pred --ccccc-hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-
Confidence 03332 23445789999999999999999999999999999999999999999887753 4899999999999987
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|+++++|++. ..|+.++..
T Consensus 544 ~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b5x_A 544 QADEILVVDEGEII-ERGRHADLL 566 (582)
T ss_pred hCCEEEEEECCEEE-EECCHHHHH
Confidence 69999999999984 557765543
No 94
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.5e-39 Score=363.59 Aligned_cols=204 Identities=26% Similarity=0.468 Sum_probs=173.6
Q ss_pred CcEEEEEeeeeeeCC--eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----------
Q 006442 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~---------- 489 (645)
...|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 446999999999974 57999999999999999999999999999999999999999999999998863
Q ss_pred cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhh-----------ccCcCcCCHhHHHHHHHHHHH
Q 006442 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ +.+ ++.|++||+..+......+++.+.++.+++. +.. +.+..+||||||||++|||||
T Consensus 417 i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 417 IGLVQQD--NIL-FSDTVKENILLGRPTATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp EEEECSS--CCC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred eEEEeCC--Ccc-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 2455654 334 4569999998876555566677777777663 222 234468999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSL 631 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~ 631 (645)
+++|++|||||||++||++++..+.+.+++. +.|+|+||||++++.. ||||++|++|++++ .|+.+++.+.
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~~ 565 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIAK 565 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999865 4699999999999975 99999999999986 5888887653
No 95
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-39 Score=368.87 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eEE
Q 006442 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (645)
Q Consensus 96 ~~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i~ 164 (645)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|+
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 45999999999964 5799999999999999999999999999999999999999999999987542 599
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
|++|+|+++ +.||+||+..+.... . .+++.+.++ ...+...+..+-.
T Consensus 433 ~v~Q~~~lf-~~tv~eni~~~~~~~-~----~~~~~~~~~---------------------------~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 433 IVLQDTILF-STTVKENLKYGNPGA-T----DEEIKEAAK---------------------------LTHSDHFIKHLPE 479 (598)
T ss_dssp EECTTCCCC-SSBHHHHHHSSSTTC-C----TTHHHHHTT---------------------------TTTCHHHHHTSTT
T ss_pred EEeCCCccc-cccHHHHHhcCCCCC-C----HHHHHHHHH---------------------------HhCCHHHHHhccc
Confidence 999999875 579999996421100 0 000111111 1111111211111
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~ 322 (645)
|+.+ ...+...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+||||++.+..
T Consensus 480 --g~~t-~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~- 555 (598)
T 3qf4_B 480 --GYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN- 555 (598)
T ss_dssp --GGGC-BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-
T ss_pred --cccc-hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-
Confidence 2221 22233589999999999999999999999999999999999999999887753 58999999999999976
Q ss_pred cCeEEEEcCceeEEeccChHHHH
Q 006442 323 CTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 323 ~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
||+|+++++|++ ...|+.++..
T Consensus 556 ~d~i~~l~~G~i-~~~g~~~~l~ 577 (598)
T 3qf4_B 556 ADLIIVLRDGEI-VEMGKHDELI 577 (598)
T ss_dssp CSEEEEECSSSE-EECSCHHHHH
T ss_pred CCEEEEEECCEE-EEECCHHHHH
Confidence 999999999998 4668776654
No 96
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.3e-39 Score=366.00 Aligned_cols=213 Identities=24% Similarity=0.392 Sum_probs=164.7
Q ss_pred ccEEEEeEEEEeCC--eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------eE
Q 006442 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (645)
Q Consensus 96 ~~i~i~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~----------~i 163 (645)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. +|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 45999999999974 6799999999999999999999999999999999999999999999987532 59
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+|++|+|.++. .||+||+..+...... .+++.+.++.+ .+.+.++++-
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~l~~~---------------------------~l~~~~~~~p 467 (582)
T 3b60_A 420 ALVSQNVHLFN-DTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAMDFINKMD 467 (582)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCHHHHHHST
T ss_pred eEEccCCcCCC-CCHHHHHhccCCCCCC----HHHHHHHHHHc---------------------------CCHHHHHhcc
Confidence 99999998865 6999999643200000 01111111111 1111111110
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
. |+.+ ..++.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++ .|+|+|+||||++.+.
T Consensus 468 ~--g~~~-~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~- 543 (582)
T 3b60_A 468 N--GLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 543 (582)
T ss_dssp T--GGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred c--cccc-cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-
Confidence 0 2322 33445789999999999999999999999999999999999999999887753 4899999999999986
Q ss_pred hcCeEEEEcCceeEEeccChHHHH
Q 006442 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (645)
Q Consensus 322 ~~d~i~~l~~G~~~~~~g~~~~~~ 345 (645)
.||+|+++++|++. ..|+.++..
T Consensus 544 ~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b60_A 544 QADEIVVVEDGIIV-ERGTHSELL 566 (582)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EecCHHHHH
Confidence 69999999999984 557765543
No 97
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.1e-39 Score=364.20 Aligned_cols=214 Identities=23% Similarity=0.369 Sum_probs=161.1
Q ss_pred cc-EEEEeEEEEeCC---eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc----------
Q 006442 96 SG-VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (645)
Q Consensus 96 ~~-i~i~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~---------- 161 (645)
.. |+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 35 999999999975 3699999999999999999999999999999999999999999999987532
Q ss_pred eEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHh
Q 006442 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (645)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (645)
+|+|++|++.++. .||+||+..+....... ..+++.+.++.+ .+.+.+.+
T Consensus 419 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~~~~---------------------------~l~~~~~~ 468 (595)
T 2yl4_A 419 KIGTVSQEPILFS-CSIAENIAYGADDPSSV--TAEEIQRVAEVA---------------------------NAVAFIRN 468 (595)
T ss_dssp SEEEECSSCCCCS-SBHHHHHHTTSSSTTTS--CHHHHHHHHHHT---------------------------TCHHHHHT
T ss_pred ceEEEccCCcccC-CCHHHHHhhcCCCcccc--CHHHHHHHHHHc---------------------------CCHHHHHh
Confidence 5999999998854 69999996432100000 000111111100 01111111
Q ss_pred hchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006442 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (645)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (645)
+-. |+.+ ...+.+.+|||||||||+|||||+++|++|||||||++||+.+++.+.+.|++ .++|+|+||||++.+
T Consensus 469 l~~--g~~~-~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 469 FPQ--GFNT-VVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI 545 (595)
T ss_dssp SSS--GGGC-BCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHH
T ss_pred Ccc--cccc-cccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 100 1111 22334589999999999999999999999999999999999999999888753 489999999999998
Q ss_pred HhhcCeEEEEcCceeEEeccChHHH
Q 006442 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (645)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~g~~~~~ 344 (645)
. .||+|+++++|++. ..|+.++.
T Consensus 546 ~-~~d~i~~l~~G~i~-~~g~~~~l 568 (595)
T 2yl4_A 546 K-NANMVAVLDQGKIT-EYGKHEEL 568 (595)
T ss_dssp H-HSSEEEEEETTEEE-EEECSCC-
T ss_pred H-cCCEEEEEECCEEE-EECCHHHH
Confidence 6 49999999999984 44655543
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-38 Score=363.03 Aligned_cols=202 Identities=29% Similarity=0.489 Sum_probs=169.6
Q ss_pred cE-EEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 423 SV-VTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 423 ~~-i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
.. |+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 34 999999999974 36999999999999999999999999999999999999999999999998863
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhcc---ccHHHHHHHHhhcCCChhhh-------c----cCcCcCCHhHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADML-------D----RKVSLLSGGEKARLAF 554 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~---~~~~~~~~~L~~~~l~~~~~-------~----~~~~~LSgGqkqrv~l 554 (645)
.+|++|+ +.+ ++.|+.||+..+... ...+++.++++.+++. +.. + .++.+|||||||||+|
T Consensus 419 ~i~~v~Q~--~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 419 KIGTVSQE--PIL-FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp SEEEECSS--CCC-CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred ceEEEccC--Ccc-cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 2355554 334 356999999986543 4567788888888873 222 2 2348999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
||||+++|++|||||||++||+++++.+.+.|++. +.|+|+||||++++.. ||||++|++|++++ .|+.+++.+
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 570 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITE-YGKHEELLS 570 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTEEEE-EECSCC---
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999999865 5699999999999975 99999999999985 466555543
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.7e-38 Score=329.50 Aligned_cols=196 Identities=23% Similarity=0.387 Sum_probs=148.2
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCC
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~ 502 (645)
+.|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ..+|++|+. .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 469999999864 6799999999999999999999999999999999999999999999998 357777763 343
Q ss_pred CCCCHHHHHHhhhccccHHHHHHHHhhcCCChh----------hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 503 ~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
. .|+.+|+. ... .........++.+++... ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 3 59999998 432 222233444555555211 1223457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 573 HLDIPSKEMLEEAI-SEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 573 ~LD~~s~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+||+.++..+.+.+ .+. +.|||+||||++++. .||++++|++|+++. .|+.+++..
T Consensus 189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 247 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQN 247 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHhh
Confidence 99999999999974 443 469999999999986 599999999999985 477766643
No 100
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3e-37 Score=346.48 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=168.1
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999875 699999999999999999999999999999999999999999986 347999999987767
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+++...... .. ...+.+.++++.+|+. +..+
T Consensus 361 ~~tv~~~~~~~~~~-------------~~------------------------------~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS-------------KL------------------------------NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH-------------HH------------------------------TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc-------------CC------------------------------CHHHHHHHHHHHcCCh-hhhc
Confidence 88997775421000 00 0023456788999996 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||+|++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--ceeEEeccChHH
Q 006442 331 M--GVSRTYEGNYSQ 343 (645)
Q Consensus 331 ~--G~~~~~~g~~~~ 343 (645)
+ |.. ...|...+
T Consensus 477 ~~~~~~-~~~g~~~~ 490 (538)
T 1yqt_A 477 GEPGKY-GRALPPMG 490 (538)
T ss_dssp EETTTE-EEECCCEE
T ss_pred CCcceE-eecCCHHH
Confidence 5 333 23455443
No 101
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.5e-37 Score=344.30 Aligned_cols=192 Identities=25% Similarity=0.327 Sum_probs=163.8
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|+++.|++. .|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|++...+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4579999999999874 57888999999999999999999999999999999999999999764 46999999987666
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+|+..... . ... .....+.++++.+|+. +..+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-----------------------~~~--~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-----------------------ALS--TSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-----------------------TTC--TTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-----------------------ccc--hhHHHHHHHHHHcCCH-HHhc
Confidence 7899998742100 0 000 0112356778888986 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999888774 358999999999999999999999998
Q ss_pred Cc
Q 006442 331 MG 332 (645)
Q Consensus 331 ~G 332 (645)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.5e-37 Score=348.67 Aligned_cols=200 Identities=29% Similarity=0.402 Sum_probs=167.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
...++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecCccCCC
Confidence 4579999999999764 689999999999999999999999999999999999999999986 347999999987777
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||.+++....... . ...+.+.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~~-------------~------------------------------~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------L------------------------------NSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------H------------------------------HCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------C------------------------------CHHHHHHHHHHHcCCc-hHhc
Confidence 889988764210000 0 0013455678888986 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||+|++++
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 9999999999999999999999999999999999999999999988775 358999999999999999999999998
Q ss_pred C--ceeEEeccChHH
Q 006442 331 M--GVSRTYEGNYSQ 343 (645)
Q Consensus 331 ~--G~~~~~~g~~~~ 343 (645)
+ |.. ...|...+
T Consensus 547 ~~~g~~-~~~g~p~~ 560 (607)
T 3bk7_A 547 GEPGRH-GRALPPMG 560 (607)
T ss_dssp EETTTE-EEECCCEE
T ss_pred CCcceE-EecCCHHH
Confidence 5 433 23455443
No 103
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-36 Score=373.08 Aligned_cols=203 Identities=23% Similarity=0.418 Sum_probs=176.2
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++-|+++||+|+|++ +++|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.+||.++.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 345999999999963 57999999999999999999999999999999999999999999999999874
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhh----------hccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|+ ...++.|++|||.++.+....+++.++++.+++.... ......+||||||||++||||+
T Consensus 493 ~i~~v~Q~---~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 493 NVAVVSQE---PALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp HEEEECSS---CCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred cccccCCc---ceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 2455554 3457899999999987767778888888887763211 1234458999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~ 629 (645)
+++|+|||||||||+||++++..+++.|.+. ++|+|+|||++.++.. ||+|++|++|+|++ .|++++++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive-~Gth~eL~ 640 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQVVE-VGDHRALM 640 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh-CCEEEEeeCCeeec-cCCHHHHH
Confidence 9999999999999999999999999999875 5699999999999976 99999999999996 57877765
No 104
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.4e-36 Score=368.52 Aligned_cols=204 Identities=25% Similarity=0.468 Sum_probs=172.4
Q ss_pred CcEEEEEeeeeeeCC---eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc---------
Q 006442 422 RSVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~---~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------- 489 (645)
++.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 345999999999974 36999999999999999999999999999999999999999999999998863
Q ss_pred -cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCCh----------hhhccCcCcCCHhHHHHHHHHHHH
Q 006442 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~lAral 558 (645)
.+|++|++ .+ ++.|++||+..+......+++.+.++..++.. ........+|||||||||+|||||
T Consensus 465 ~i~~v~Q~~--~l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEP--VL-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSC--CC-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCC--cc-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 34566653 34 46699999998765555666666666655421 112345668999999999999999
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
+++|+|||||||||+||++++..+++.++.. +.|+|+||||++++.. ||+|++|++|++++ .|+++++.+
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~ 613 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMR 613 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHH
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999754 5699999999999977 99999999999985 588887764
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.7e-35 Score=341.71 Aligned_cols=197 Identities=31% Similarity=0.537 Sum_probs=166.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee----cccchhccchhh
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----VLPNYFEQNQAE 499 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~----~~~~~~~q~~~~ 499 (645)
.|...|++++|+++.+|+++||+|++|++++|+||||||||||+++|+| |+| +|.+ ....|+.|+. .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~-~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDI-D 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCC-C
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccc-c
Confidence 4666699999999999999999999999999999999999999999995 222 2222 1223444432 2
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHH
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~ 579 (645)
.+....|+.+++....... .+++..+|+.+|+..+..++++.+|||||||||+|||||+.+|+||||||||+|||+.++
T Consensus 506 ~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHH
T ss_pred ccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 3456789999997521111 567889999999965678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHH
Q 006442 580 EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQS 630 (645)
Q Consensus 580 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~ 630 (645)
..+.+.|++.+.|||+||||++++.++||++++|++|+++.+.|+++++.+
T Consensus 585 ~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999998667999999999999999999999999999867799998875
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=329.92 Aligned_cols=197 Identities=23% Similarity=0.302 Sum_probs=161.4
Q ss_pred EeEEEEeCCe-eeeeeeeEEEECC-----cEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC
Q 006442 101 ENISKSYKGV-TVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (645)
Q Consensus 101 ~nls~~y~~~-~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (645)
++++++|++. ++++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|++...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 5678899764 5899999999999 78999999999999999999999999999842 2457999999987667
Q ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccc
Q 006442 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (645)
Q Consensus 175 ~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (645)
..||++++...+.. .......+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIRG-------------------------------------------QFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCSS-------------------------------------------TTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhhc-------------------------------------------ccccHHHHHHHHHHcCCh-hhhc
Confidence 78999876421100 000012345677788886 6789
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEc
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l~ 330 (645)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+ +.|+|||+||||++++..+||||++++
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998887764 358999999999999999999999998
Q ss_pred C--ceeEEeccChHHHH
Q 006442 331 M--GVSRTYEGNYSQYV 345 (645)
Q Consensus 331 ~--G~~~~~~g~~~~~~ 345 (645)
+ |+. ...|+..+..
T Consensus 543 ~~~g~~-~~~g~p~~~~ 558 (608)
T 3j16_B 543 GIPSKN-AHARAPESLL 558 (608)
T ss_dssp EETTTE-EECCCCEEHH
T ss_pred CCCCeE-EecCChHHHh
Confidence 6 554 4556655443
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=6.4e-32 Score=311.93 Aligned_cols=192 Identities=23% Similarity=0.301 Sum_probs=131.8
Q ss_pred CeeceeeeeEEEecCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCe-------eEEEECcee
Q 006442 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLL---------------------KLIMGLEKPRG-------GEVLLGEHN 487 (645)
Q Consensus 436 ~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl---------------------~~l~g~~~p~~-------G~i~~~g~~ 487 (645)
...+|+|+||+|++||++||+||||||||||+ +++.|+.+|+. |.|.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 89999999984 445555543
Q ss_pred cc------cchhccch-----------------hhcCCCCCCHHHHHHhhhcc------cc--------HHHHHHHHhhc
Q 006442 488 VL------PNYFEQNQ-----------------AEALDLDKTVLETVAEAAED------WR--------IDDIKGLLGRC 530 (645)
Q Consensus 488 ~~------~~~~~q~~-----------------~~~l~~~~tv~e~v~~~~~~------~~--------~~~~~~~L~~~ 530 (645)
.. .+++.|.. .....+.+|+.+|+...... .. ..+....|+.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12222211 11122456888887653110 00 01123458889
Q ss_pred CCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh
Q 006442 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605 (645)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 605 (645)
|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 986444689999999999999999999999988 99999999999999999999998765 569999999999876
Q ss_pred hCCEEEEE------eCCeEEeeCCChhHHH
Q 006442 606 IVNRVVEV------KGSNLQDYAGDYNQVQ 629 (645)
Q Consensus 606 ~~d~v~~l------~~g~i~~~~~~~~~~~ 629 (645)
.||||++| ++|+++. .|+++++.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~~-~g~~~~~~ 297 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVVA-AGTPEEVM 297 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEEE-EECHHHHH
T ss_pred hCCEEEEecccccccCCEEEE-ecCHHHHh
Confidence 59999999 8899985 57777664
No 108
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.8e-28 Score=264.71 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=141.9
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCcc
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--------------------------------------p~~G 152 (645)
.++++++|+|++| +++|+|+|||||||||++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977664 4467
Q ss_pred EEEEcCCCc-----------eEEEEeccCccCCCCCHHHH--HHHhhH----HH-HHHHHHHHHHHHHHhhccchh----
Q 006442 153 NVIKAKSNM-----------KIAFLSQEFEVSMSRTVREE--FMSAFK----EE-MEIAGKLERVQKALESAVDDM---- 210 (645)
Q Consensus 153 ~I~~~~~~~-----------~i~~v~Q~~~~~~~~Tv~en--i~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~---- 210 (645)
++.++|... .+++++|+..+... +..+. ++..+. .. ...+....+..+.........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 888887542 28999998765432 32221 111000 00 000111111111111000000
Q ss_pred -------HHHHhHHHHHHHHH---HHHHhCChhcHHHHHHhhchhcCCCccccc--------------------------
Q 006442 211 -------DLMGRLLDEFDLLQ---RKAQAVNLDTLDAKVSKLMPELGFTADDGD-------------------------- 254 (645)
Q Consensus 211 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~-------------------------- 254 (645)
+.+..+.+++.... ..........+...+.+.+..++++.....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00111111111100 000011123455667777777776431100
Q ss_pred ---ccCCC-CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 255 ---RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 255 ---~~~~~-LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|+|||+||||++++ ..||++
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 23333 6999999999999999999 99999999999999999999998865 479999999999887 579999
Q ss_pred EEE----cCceeEE
Q 006442 327 VET----EMGVSRT 336 (645)
Q Consensus 327 ~~l----~~G~~~~ 336 (645)
+++ ++|++..
T Consensus 366 ~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 366 YKVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEeccCCceEE
Confidence 999 8887643
No 109
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-32 Score=299.60 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=156.4
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-E-EEEcCC-CceEEEEeccCc
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~-I~~~~~-~~~i~~v~Q~~~ 171 (645)
.++++++|++|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|++|++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45689999999995 79999999999999999999999999999999999999 8 998763 346999999974
Q ss_pred c---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 172 V---SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 172 ~---~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
+ ....|+.+|+ ..... .......+++.+++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~~-----------------------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSL-----------------------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBC-----------------------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-ccccc-----------------------------------------ccCcchHHHHHHHHHHhCC
Confidence 3 3346887776 21100 0000001223467888888
Q ss_pred CcccccccCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAra--L~~~p~i----LLLDE-Pts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---- 317 (645)
.. ..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||.+
T Consensus 228 ~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Cc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 63 333 78999999999999999 9999999 99999 99999999 88888888888999999999988
Q ss_pred --HHHhhcCe-----EEEEc-CceeEEeccCh
Q 006442 318 --FLDQLCTK-----IVETE-MGVSRTYEGNY 341 (645)
Q Consensus 318 --~l~~~~d~-----i~~l~-~G~~~~~~g~~ 341 (645)
++..+||+ |++|+ +|++. .|+.
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~ 333 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDD 333 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCH
Confidence 77899999 99999 89874 5654
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=2.4e-28 Score=284.04 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=149.5
Q ss_pred CccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHH-HHcC-------CCCCccEEE-----------
Q 006442 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI-IAGQ-------EEPDSGNVI----------- 155 (645)
Q Consensus 95 ~~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~-l~G~-------~~p~~G~I~----------- 155 (645)
...|+++|+++ ..|+||||+|++|++++|+|+||||||||+++ |+|. .+|+.|.+.
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 34699999986 26999999999999999999999999999996 7654 456666652
Q ss_pred -EcC---CCceEEEEeccCccC-CCC------CHHHHHHHhhHHHHHHHHHHHHHH-HH---------Hhhc--------
Q 006442 156 -KAK---SNMKIAFLSQEFEVS-MSR------TVREEFMSAFKEEMEIAGKLERVQ-KA---------LESA-------- 206 (645)
Q Consensus 156 -~~~---~~~~i~~v~Q~~~~~-~~~------Tv~eni~~~~~~~~~~~~~~~~~~-~~---------~~~~-------- 206 (645)
..| .-.++.++.|.+.-. +.. .+++.+...|..... .+...+. .. ++.|
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~--~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPL--AKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHH--HHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChH--HHhcCCccccccccccccccccccCCCccch
Confidence 122 112366888876321 111 233444322211000 0000000 00 0000
Q ss_pred -----cc-------------hh---------HHHHhHHH--HHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 207 -----VD-------------DM---------DLMGRLLD--EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 207 -----~~-------------~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
.+ .. ..+.+.+. ..+. ...+.......++.++|+.+|+.....++++
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~----l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEA----HDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHH----HHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHH----HHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 00 00 00000000 0000 0111111123467889999999754568899
Q ss_pred CCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE--
Q 006442 258 ASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET-- 329 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~---p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~d~i~~l-- 329 (645)
.+|||||||||+||++|+.+ |+||||||||+|||+.+++.|.++|+ +.|.|||+||||++++ ..||+|++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p 807 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGP 807 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECC
Confidence 99999999999999999996 69999999999999999999988764 4699999999999999 789999999
Q ss_pred ----cCceeEEeccChHHH
Q 006442 330 ----EMGVSRTYEGNYSQY 344 (645)
Q Consensus 330 ----~~G~~~~~~g~~~~~ 344 (645)
++|++ .+.|+.+++
T Consensus 808 ~~g~~~G~I-v~~g~~~el 825 (842)
T 2vf7_A 808 GAGEDGGRL-VAQGTPAEV 825 (842)
T ss_dssp SSGGGCCSE-EEEECHHHH
T ss_pred CCCCCCCEE-EEEcCHHHH
Confidence 67877 456776554
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-31 Score=293.78 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=155.8
Q ss_pred CcEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-E-EEECceec-ccchhccchh
Q 006442 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (645)
Q Consensus 422 ~~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~-i~~~g~~~-~~~~~~q~~~ 498 (645)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.++|..- ..++++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45788999999985 79999999999999999999999999999999999999 8 99987321 1345555431
Q ss_pred h-cCCCCCCHHHHHHhhhcc----ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHH--HccCCCe----EEe
Q 006442 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF--MVKPSTL----LVL 567 (645)
Q Consensus 499 ~-~l~~~~tv~e~v~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----LlL 567 (645)
. .+....++.+|+ +.... .....+..+++.+|+. +..+ +.+|||||||||+|||| |+.+|++ |||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 1 123345777777 43211 1112345667888885 3334 78999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhCCE-----EEEEe-CCeEEeeCCChhHH
Q 006442 568 DE-PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY------FVKQIVNR-----VVEVK-GSNLQDYAGDYNQV 628 (645)
Q Consensus 568 DE-Pt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~d~-----v~~l~-~g~i~~~~~~~~~~ 628 (645)
|| ||++||+. .+.|.+++++++.|+|+|+||.+ ++..+||| |++|+ +|+++ .++.++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~ 336 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYK 336 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHH
Confidence 99 99999999 88888999998889999999987 88899999 99999 99997 4666654
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.5e-27 Score=279.55 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=91.8
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvI 310 (645)
.++.++|..+|+.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.++|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456678899999755678889999999999999999999876 6999999999999999999988764 4699999
Q ss_pred EEecCHHHHHhhcCeEEEE------cCceeEEeccChHHH
Q 006442 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQY 344 (645)
Q Consensus 311 ivsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~ 344 (645)
+||||++++.. ||+|++| ++|++ .+.|+..+.
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel 900 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEI 900 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHH
Confidence 99999999865 9999999 78887 567776554
No 113
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=6.7e-28 Score=280.48 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=91.0
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIi 311 (645)
+..++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999754678999999999999999999999875 9999999999999999999988764 46999999
Q ss_pred EecCHHHHHhhcCeEEEE------cCceeEEeccChHHHH
Q 006442 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~ 345 (645)
||||++++ ..||+|++| ++|++ .+.|+..+..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~ 941 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVA 941 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHH
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHH
Confidence 99999998 479999999 57877 4567765543
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.3e-27 Score=258.45 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=71.1
Q ss_pred CCHhHHHHHHHHHHHccCC--CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEEE----eC
Q 006442 544 LSGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEV----KG 615 (645)
Q Consensus 544 LSgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~l----~~ 615 (645)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 47999999999887 579999999 89
Q ss_pred CeEEe
Q 006442 616 SNLQD 620 (645)
Q Consensus 616 g~i~~ 620 (645)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98864
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=1.4e-27 Score=278.76 Aligned_cols=106 Identities=19% Similarity=0.303 Sum_probs=91.0
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p---~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIi 311 (645)
+..++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678899999644678899999999999999999999875 9999999999999999999988764 46999999
Q ss_pred EecCHHHHHhhcCeEEEE------cCceeEEeccChHHHH
Q 006442 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (645)
Q Consensus 312 vsHd~~~l~~~~d~i~~l------~~G~~~~~~g~~~~~~ 345 (645)
||||++++ ..||+|++| ++|++ .+.|+..++.
T Consensus 922 isHdl~~i-~~aDrIivL~p~gg~~~G~I-v~~G~~~el~ 959 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLGPEGGAGGGTV-VAQGTPEDVA 959 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEESSSTTSCSEE-EEEECHHHHH
T ss_pred EcCCHHHH-HhCCEEEEECCCcCCCCCEE-EEecCHHHHH
Confidence 99999998 579999999 67877 4667766543
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=8.3e-26 Score=242.17 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=74.0
Q ss_pred ccccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 006442 253 GDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~------~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~~~ 323 (645)
.++++.+|||||||||+||+||+ .+|++|||||||+|||+.++.++.++|+ +.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35788999999999999999999 7999999999999999999999988774 458999999999998 5679
Q ss_pred CeEEEEcCcee
Q 006442 324 TKIVETEMGVS 334 (645)
Q Consensus 324 d~i~~l~~G~~ 334 (645)
|+++++++|++
T Consensus 352 d~~~~l~~G~i 362 (365)
T 3qf7_A 352 DRKLRITGGVV 362 (365)
T ss_dssp SCEEEEETTEE
T ss_pred CEEEEEECCEE
Confidence 99999999986
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=3.7e-28 Score=240.09 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=96.3
Q ss_pred EeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc-------CCCceEEEEeccCccCCCCCH
Q 006442 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (645)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~-------~~~~~i~~v~Q~~~~~~~~Tv 178 (645)
+|+++.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... .....|||++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35566789986 89999999999999999999999999 9999988431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 179 ~eni-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
.||+ ... .... . .+.. ... ..++.++++. |+
T Consensus 76 ~enl~~~~-~~~~------~----~~~~-----------------------~~~----~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPYL-RPLH------D----ALRD-----------------------MVE----PEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTTT-HHHH------H----HHTT-----------------------TSC----TTHHHHHHHT-TS---------
T ss_pred HHHHHHHH-HHHH------H----HHHH-----------------------hcc----HHHHHHHHHh-CC---------
Confidence 3444 110 0000 0 0000 000 1123333333 22
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~ 321 (645)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|+||| ||||++++..
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 78888887764 478999 9999987754
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2.2e-25 Score=235.08 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=75.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006442 252 DGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (645)
..++++.+||||||||++||+||+ .+|++|||||||++||+..++.+.++|++ .+.|||++||+.+ +..+||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~ 290 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADL 290 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCce
Confidence 356778999999999999999997 68999999999999999999999988754 3789999999965 5568998
Q ss_pred E--EEEcCceeEEeccChH
Q 006442 326 I--VETEMGVSRTYEGNYS 342 (645)
Q Consensus 326 i--~~l~~G~~~~~~g~~~ 342 (645)
+ +.+.+|.......+.+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 7 8888998765554443
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.1e-25 Score=215.41 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=97.4
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCC-CCCHHHHHHHhhHHHHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~-~~Tv~eni~~~~~~~~~~~ 193 (645)
||||+|++|++++|+||||||||||++++.+-.. .+.. +.-.++++|++.... ..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 6899999999999999999999999998654221 1111 111245556542110 001111100
Q ss_pred HHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHH
Q 006442 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (645)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 273 (645)
... ......|.. ...+. ....|||||||++||||
T Consensus 64 -------------------------------------------~~~-~~~~~~g~~-~~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIV-SKRLQLGKL-TVVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHH-HHHHHTTCC-EEEES-CCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHH-HHHHhCCCe-EEEEC-CCCCHHHHHHHHHHHHH
Confidence 000 001112332 22232 35669999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 006442 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~----------------~~~~l~~~L~---~~g~tvIivsHd~~~l~~~ 322 (645)
++.+|++|+|||||++||+. ....+.+.++ +.|.|+|++|||++++..+
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 99999999999999999999 5577777753 3599999999999999763
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=3.9e-25 Score=213.15 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEc----CCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~----~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~ 199 (645)
+++|+||||||||||+++|+|++... .|...-. .....++|++|++ ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET------TCCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC------cHHHHH-----------------
Confidence 68999999999999999999997522 2322111 1123578888875 111111
Q ss_pred HHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc-ccccccCCCCChHHHHHHHHHHH-----
Q 006442 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (645)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRvaLAra----- 273 (645)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 00111111 24567789999999999999996
Q ss_pred HccCCCEEEEeC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcCe
Q 006442 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (645)
Q Consensus 274 L~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvIivs---Hd~~~l~~~~d~ 325 (645)
|+.+|++||||| ||++||+...+++.+++++.+.|+|+++ ||++++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988788788888 599999999998
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=1.2e-23 Score=225.43 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=75.0
Q ss_pred ccCcCcCCHhHHHHHHHHHHHc------cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhCC
Q 006442 538 DRKVSLLSGGEKARLAFCKFMV------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVN 608 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~d 608 (645)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++..+.+.|.++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788899999999999999999 799999999999999999999999999865 4699999999998 56799
Q ss_pred EEEEEeCCeEEe
Q 006442 609 RVVEVKGSNLQD 620 (645)
Q Consensus 609 ~v~~l~~g~i~~ 620 (645)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
No 122
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=1.3e-26 Score=228.96 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=95.6
Q ss_pred eeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-----c--ccchhccchhhcC-CC
Q 006442 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--LPNYFEQNQAEAL-DL 503 (645)
Q Consensus 432 ~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-----~--~~~~~~q~~~~~l-~~ 503 (645)
+.|+++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|...... . ..+|++|+..+++ ..
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 356667789985 89999999999999999999999999 9999998431010 0 1234444431122 11
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
..+..+.+. .......+.++++. + | ||||||+|||||+.+|++|||||||++ ++..+.
T Consensus 83 ~~~~~~~~~---~~~~~~~~~~~l~~-g------------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~ 140 (208)
T 3b85_A 83 LRPLHDALR---DMVEPEVIPKLMEA-G------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMK 140 (208)
T ss_dssp THHHHHHHT---TTSCTTHHHHHHHT-T------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHH
T ss_pred HHHHHHHHH---HhccHHHHHHHHHh-C------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHH
Confidence 000111110 00111233444442 2 2 999999999999999999999999999 888999
Q ss_pred HHHHhc--CceEEEEecCHHHHHh
Q 006442 584 EAISEY--KGTVITVSHDRYFVKQ 605 (645)
Q Consensus 584 ~~l~~~--~~tvi~vsHd~~~i~~ 605 (645)
+.|+++ +.||| ||||++++..
T Consensus 141 ~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 141 MFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHTTBCTTCEEE-EEEC------
T ss_pred HHHHHhcCCCEEE-EECCHHHHhC
Confidence 999876 35888 9999987754
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=3.6e-25 Score=211.93 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=98.9
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
++||+|++||+++|+||||||||||++++.+-. ..+.. +...+++.|+..... ...++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~-d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISS-DFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEH-HHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEcc-HHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 689999999999999999999999999865321 11211 112234443321111 11111222111
Q ss_pred HHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH----------------HHHHHHHH
Q 006442 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP----------------SKEMLEEA 585 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------------s~~~l~~~ 585 (645)
........+... ........|||||||++||||++.+|++|+|||||++||+. ....+.+.
T Consensus 65 -~~~~~~~~g~~~--~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 65 -IVSKRLQLGKLT--VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp -HHHHHHHTTCCE--EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCCeE--EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 111122234321 22344567999999999999999999999999999999999 55777777
Q ss_pred HHhc---CceEEEEecCHHHHHhhCCEE
Q 006442 586 ISEY---KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 586 l~~~---~~tvi~vsHd~~~i~~~~d~v 610 (645)
|++. +.|+|+||||++++.. ++++
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 5433 6699999999999976 3443
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.2e-23 Score=221.77 Aligned_cols=90 Identities=29% Similarity=0.399 Sum_probs=75.1
Q ss_pred hccCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEE
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v 610 (645)
.+.++..||||||||++||++|+ .+|++|||||||++||+..++.+.+.|+++ +.|||+|||+.+ +.++||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 45678899999999999999996 689999999999999999999999999876 459999999965 55689987
Q ss_pred --EEEeCCeEEeeCCChhH
Q 006442 611 --VEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 611 --~~l~~g~i~~~~~~~~~ 627 (645)
++|.+|.......+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888876554444443
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=4.8e-24 Score=205.54 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec----------ccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~----------~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
+++|+||||||||||+++|+|++. |.++|.+. ..++..|.. ++.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~---------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKI---------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET--------TCCEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC--------cHHHHH----------
Confidence 689999999999999999999985 22233211 112222221 111111
Q ss_pred HHHHHHhhcCCCh-hhhccCcCcCCHhHHHHHHHHHH-----HccCCCeEEeeC--CCCCCCHHHHHHHHHHHHhcCceE
Q 006442 522 DIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKF-----MVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEYKGTV 593 (645)
Q Consensus 522 ~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--Pt~~LD~~s~~~l~~~l~~~~~tv 593 (645)
+..+++.. ...++++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.|+
T Consensus 59 -----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~ 133 (178)
T 1ye8_A 59 -----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133 (178)
T ss_dssp -----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE
T ss_pred -----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeE
Confidence 11112211 24567788999999999999996 999999999999 999999999999999999876678
Q ss_pred EEEe---cCHHHHHhhCCEEEEEeCCeEEeeC-CChhHHHH
Q 006442 594 ITVS---HDRYFVKQIVNRVVEVKGSNLQDYA-GDYNQVQS 630 (645)
Q Consensus 594 i~vs---Hd~~~i~~~~d~v~~l~~g~i~~~~-~~~~~~~~ 630 (645)
|+++ ||.+++..+|+| .+|++.+.. .+.+++.+
T Consensus 134 i~~~H~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 134 VATIPIRDVHPLVKEIRRL----PGAVLIELTPENRDVILE 170 (178)
T ss_dssp EEECCSSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHH
T ss_pred EEEEccCCCchHHHHHHhc----CCcEEEEecCcCHHHHHH
Confidence 8888 599999999998 345554433 34444443
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=4.5e-26 Score=246.37 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=129.3
Q ss_pred eeeeeeeeEEEECCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc-eEEEEec
Q 006442 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~-~i~~v~Q 168 (645)
..+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|.+++... +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998876432 2378999
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
++ .++..|++|++..... ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~~------------------------------------------------~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST------------------------------------------------NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS------------------------------------------------SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccch------------------------------------------------HHHHHHHHHHcCC
Confidence 85 3456677766421100 0112344555565
Q ss_pred CcccccccCCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHcc--------C---
Q 006442 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (645)
Q Consensus 249 ~~~~~~~~~~~LSGG--qkqRvaLAraL~~----------~p~iLLLDEPts~LD~~~~~~l~~~L~~--------~--- 305 (645)
.. . +..+. |||| |+||++||+||.. +|++|+|||||+|||+..++.+.+.+++ .
T Consensus 147 ~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Cc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 2 23334 9999 9999999999999 9999999999999999998877655422 2
Q ss_pred -CCeEEEEecCHHH--HHhhcCeEE-EEcCc
Q 006442 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (645)
Q Consensus 306 -g~tvIivsHd~~~--l~~~~d~i~-~l~~G 332 (645)
..+|+++||+++. ++.+||+|. .+..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2568889999987 899999886 34444
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=3.3e-25 Score=239.63 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=131.3
Q ss_pred eeceeeeeEEEecCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-cchhcc
Q 006442 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFEQ 495 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge--------------------~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~q 495 (645)
+.+++++|++|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 99999999999999999999999999999999886542 244444
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHh--HHHHHHHHHHHcc----------CCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKARLAFCKFMVK----------PST 563 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 563 (645)
+. ..+..++.|++..... ...+.++|+.+++. +. +..+. ||+| ||||++||+||+. +|+
T Consensus 116 ~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cc---ccCCeeehHhhcccch---HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 31 2344566665433321 12366788888874 32 33333 9999 9999999999999 999
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecCHHH--HHhhCCEEE-EEeCC
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEY------------KGTVITVSHDRYF--VKQIVNRVV-EVKGS 616 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~d~v~-~l~~g 616 (645)
+|+|||||++||+.++..+.+.|+++ ..+|++.||+++. +.++||++. .|..|
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999998888777643 1368889999887 888898885 33333
No 128
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=7.2e-24 Score=221.03 Aligned_cols=173 Identities=18% Similarity=0.242 Sum_probs=132.3
Q ss_pred eCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccC
Q 006442 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEF 170 (645)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~ 170 (645)
++....++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 333333467899999999999999999999999999999999999999987642 1489999998
Q ss_pred c-cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 171 ~-~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
. ..+..|+++|+..+.. .. .+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~~------------------------~d--------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------TT------------------------CS--------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------cC------------------------Cc--------chHHhcCCCC
Confidence 7 6667788888642100 00 00 1345667775
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~ 318 (645)
+..++.+.+|| |||++|||||+.+|+ +|+|| ||+|||+... +..+-+..|.|+|++|| .+..
T Consensus 196 -~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 -HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp -SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred -cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 45567788999 999999999999999 99999 9999998764 33333456899999999 5667
Q ss_pred HHhhcCeEEEEcCcee
Q 006442 319 LDQLCTKIVETEMGVS 334 (645)
Q Consensus 319 l~~~~d~i~~l~~G~~ 334 (645)
+......|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 7778889999988853
No 129
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.7e-26 Score=239.98 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=121.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++. .
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf~-~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFWL-A 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGGG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcccccc-c
Confidence 489999999998 67999999999999999999999999999999999998 89984 46789887643 5
Q ss_pred CHHH-HHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 177 TVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 177 Tv~e-ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
|+++ |+..... . .+ .+.+.++.+|. ...+
T Consensus 168 ti~~~ni~~~~~------------------~---~~----------------------~~~~~i~~~L~------~gld- 197 (305)
T 2v9p_A 168 SLADTRAALVDD------------------A---TH----------------------ACWRYFDTYLR------NALD- 197 (305)
T ss_dssp GGTTCSCEEEEE------------------E---CH----------------------HHHHHHHHTTT------GGGG-
T ss_pred cHHHHhhccCcc------------------c---cH----------------------HHHHHHHHHhH------ccCC-
Confidence 7776 6531100 0 00 00111222111 1222
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCceeE
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~~~ 335 (645)
+..|||||||| ||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| ++++|++
T Consensus 198 -g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i- 255 (305)
T 2v9p_A 198 -GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ- 255 (305)
T ss_dssp -TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-
T ss_pred -ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-
Confidence 68999999999 999999999999 99999999887752 28998876 579999 9999987
Q ss_pred EeccChHHH
Q 006442 336 TYEGNYSQY 344 (645)
Q Consensus 336 ~~~g~~~~~ 344 (645)
.+.|+..++
T Consensus 256 v~~g~~~el 264 (305)
T 2v9p_A 256 PFNITDADW 264 (305)
T ss_dssp CCCCCHHHH
T ss_pred EEeCCHHHH
Confidence 466775443
No 130
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=4.9e-21 Score=203.19 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=68.6
Q ss_pred ccccccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 006442 251 DDGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkq------RvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~g~tvIivsHd~~~l~~ 321 (645)
...++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+ +.+.|||+||||.+ +..
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence 3457788999999999 6788889999999999999999999999999988774 34789999999966 567
Q ss_pred hcCeEEEEc
Q 006442 322 LCTKIVETE 330 (645)
Q Consensus 322 ~~d~i~~l~ 330 (645)
+||++++++
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 899999885
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.5e-25 Score=232.85 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=121.2
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCC
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~ 503 (645)
.|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+ .|. ..+ +
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v--------~q~--~~l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA--------NHK--SHF-W 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG--------GTT--SGG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe--------cCc--ccc-c
Confidence 488999999998 78999999999999999999999999999999999998 79985422 221 111 1
Q ss_pred CCCHHH-HHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHH
Q 006442 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582 (645)
Q Consensus 504 ~~tv~e-~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l 582 (645)
..|+.+ |+.... ... ..+.+.++.+ +. +..+ +..|||||||| |||++++|+||| |++||+.++..+
T Consensus 166 ~~ti~~~ni~~~~-~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALVD-DAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEEE-EEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccCc-ccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 123333 333321 111 1344555553 32 2233 67899999999 999999999999 999999998887
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHH
Q 006442 583 EEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQV 628 (645)
Q Consensus 583 ~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~ 628 (645)
.. +||++..+ .+||+| +|++|+++. .|+.+++
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~-~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQPF-NITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence 62 29999876 579999 999999984 6888877
No 132
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=7.6e-23 Score=217.40 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=130.7
Q ss_pred eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCc-cCCCC
Q 006442 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFE-VSMSR 176 (645)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~-~~~~~ 176 (645)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..|+|++|++. ..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999999999999987642 14899999987 66777
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
|+++|+..+.. .. .+ ..+++.+|+. +..++.
T Consensus 228 tv~e~l~~~~~----------------~~------------------------~d--------~~lldt~Gl~-~~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------EG------------------------YD--------VVLCDTSGRL-HTNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------TT------------------------CS--------EEEEECCCCS-SCCHHH
T ss_pred hHHHHHHHHHh----------------CC------------------------CH--------HHHHHhcCCC-hhhhhH
Confidence 88888742100 00 00 0345667775 455677
Q ss_pred CCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcCe
Q 006442 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH---------d~~~l~~~~d~ 325 (645)
+.+|| |||++|||||+.+|+ +|+|| ||+|||+.... ..+-+..+.|+|++|| .+..+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 88999 999999999999999 99999 99999987653 3333456899999999 46677777889
Q ss_pred EEEEcCce
Q 006442 326 IVETEMGV 333 (645)
Q Consensus 326 i~~l~~G~ 333 (645)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=1.5e-20 Score=200.10 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=72.9
Q ss_pred cccCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 006442 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 254 ~~~~~-~LSGGqkqRvaLAraL~---------~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~ 323 (645)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+++.+.|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55667 89999999999999999 8999999999999999999999999997766899999995 43 89
Q ss_pred CeEEEEcCceeEEeccCh
Q 006442 324 TKIVETEMGVSRTYEGNY 341 (645)
Q Consensus 324 d~i~~l~~G~~~~~~g~~ 341 (645)
|+++++++|++. ..|+.
T Consensus 335 ~~i~~l~~G~i~-~~g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADE 351 (359)
T ss_dssp SEEEEEETTEEE-ECCCT
T ss_pred CEEEEEECCEEE-ecCCH
Confidence 999999999974 44543
No 134
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=1.8e-24 Score=213.47 Aligned_cols=174 Identities=10% Similarity=-0.013 Sum_probs=105.3
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC------CCceEEEEeccCccCCCCCHHHHHH
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~------~~~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 347777 79999999999999999999999999999863332221111 1235889999876544444444431
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhh------chhcCCCcccccccC
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l------l~~lgl~~~~~~~~~ 257 (645)
.... ...++ .. ...+....++++.+. ++.+|+. ...++.+
T Consensus 87 ~~~~--------------~~~n~----~~---------------~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAE--------------IHGGL----HR---------------SGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEE--------------EGGGT----EE---------------EEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehh--------------hcCch----hh---------------cCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 0000 00000 00 000011122233333 3444442 3455666
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~L----D~~~~~~l~~~L~----~~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
..|| +|+.+|++++|||||+++ |+..+..+.++++ +.|.|+|+||||++++..+||+|+++
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7777 899999999999999998 6777777776653 35899999999999999999999987
Q ss_pred c
Q 006442 330 E 330 (645)
Q Consensus 330 ~ 330 (645)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
No 135
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=2.5e-20 Score=208.73 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.1
Q ss_pred ccCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 255 ~~~~~L-SGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.+...+.++|++ .|.|||+|||+++.+. .||+++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456788 999999999999999999 99999999999999999999887743 2899999999999886 69999999
Q ss_pred cCc
Q 006442 330 EMG 332 (645)
Q Consensus 330 ~~G 332 (645)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 136
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=1.4e-22 Score=211.40 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=127.6
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhc-CCC
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDL 503 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~-l~~ 503 (645)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. +++.|+ .. +++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC----CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec--CCccCH
Confidence 46788899999999999999999999999999999999999998876531 122222 22 445
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEM 581 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~ 581 (645)
..++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.+.
T Consensus 169 ~~~v~e~l~~~~~~~~d---~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-- 238 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-- 238 (302)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--
T ss_pred HHHHHHHHHHHHHcCCc---chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--
Confidence 56788888754311100 1245666763 44567788899 999999999999999 99999 9999998865
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhCCEEEEEeCCeEE
Q 006442 582 LEEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 582 l~~~l~~~~~tvi~vsH---------d~~~i~~~~d~v~~l~~g~i~ 619 (645)
+.++-++.+.|+|++|| .++.+..+...|.++..|+..
T Consensus 239 ~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 33333356789999999 677787888999999998653
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=3.7e-24 Score=224.22 Aligned_cols=180 Identities=8% Similarity=0.064 Sum_probs=126.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEE-----------------------EECCcEEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999994 566666664 8999999999999999999999999999998664
Q ss_pred EEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChh
Q 006442 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (645)
Q Consensus 154 I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (645)
..++|++|++.+++. |+.+|+..... .... ..
T Consensus 121 -------~~v~~v~qd~~~~~~-t~~e~~~~~~~----------------~g~~------------------------~~ 152 (312)
T 3aez_A 121 -------PRVDLVTTDGFLYPN-AELQRRNLMHR----------------KGFP------------------------ES 152 (312)
T ss_dssp -------CCEEEEEGGGGBCCH-HHHHHTTCTTC----------------TTSG------------------------GG
T ss_pred -------CeEEEEecCccCCcc-cHHHHHHHHHh----------------cCCC------------------------hH
Confidence 358999999877666 88888631000 0000 00
Q ss_pred cHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEe
Q 006442 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313 (645)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivs 313 (645)
...+.+.+++..++ . ...+..+.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.+ ..+ .+|+|+
T Consensus 153 ~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~---~~D-~~I~V~ 225 (312)
T 3aez_A 153 YNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSD---LFD-FSLYVD 225 (312)
T ss_dssp BCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGG---GCS-EEEEEE
T ss_pred HHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHH---hcC-cEEEEE
Confidence 00122334444444 2 23346678999999999999999999999999999999998622 11111 123 357778
Q ss_pred cCHHHH-HhhcCeEEEEcCce
Q 006442 314 HDRAFL-DQLCTKIVETEMGV 333 (645)
Q Consensus 314 Hd~~~l-~~~~d~i~~l~~G~ 333 (645)
|+.+.. ...+.|.+.+.++.
T Consensus 226 a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 226 ARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ECHHHHHHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 887654 34455555555543
No 138
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=9.2e-23 Score=222.92 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=133.4
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------- 160 (645)
+.++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999997 67799999 9999999999999999999999999999999999999988752
Q ss_pred ----ceEEEEecc-CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..|+|++|. ....+..|+.+|+.... + + +. . ..
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--e---------~---~~------------------------~-~~--- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIA--E---------D---FR------------------------D-RG--- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--H---------H---HH------------------------T-TT---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHH--H---------H---HH------------------------h-CC---
Confidence 258999995 33334556666654210 0 0 00 0 00
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccC-------CC-
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~-------g~- 307 (645)
..++ ...+. +..||+|| |||+|| +.+|++ |+|||+.....+.+++.+. |.
T Consensus 247 ----~~v~-------~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVL-------LIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEE-------EEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHH-------HHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 0011 11122 57899999 999999 889988 9999999999999988532 43
Q ss_pred ----eEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 308 ----PMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 308 ----tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
||+++|||++ ..+||+++.+.+|++
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEE
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEE
Confidence 8999999998 678999999999876
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.82 E-value=5.6e-24 Score=211.78 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=99.1
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-----------ceEEEEeccCccCCCCCH-
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTV- 178 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-----------~~i~~v~Q~~~~~~~~Tv- 178 (645)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ +.+ ..++|++|++..++..+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999998 5 98887 321 246778877543211100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCC
Q 006442 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (645)
Q Consensus 179 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (645)
.++ ++... +... .+. .....+.+++....+ ...+ .
T Consensus 87 ~~~---------------------l~~~~----~~~~-------------~~g--~~~~~i~~~l~~~~~--~il~---~ 121 (218)
T 1z6g_A 87 EDF---------------------LEYDN----YANN-------------FYG--TLKSEYDKAKEQNKI--CLFE---M 121 (218)
T ss_dssp TCE---------------------EEEEE----ETTE-------------EEE--EEHHHHHHHHHTTCE--EEEE---E
T ss_pred cch---------------------hhhhh----cccc-------------cCC--CcHHHHHHHHhCCCc--EEEE---e
Confidence 000 00000 0000 000 001123333333221 1122 6
Q ss_pred CCChHHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhc
Q 006442 259 SFSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 259 ~LSGGqkqRvaL-----AraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----------~g~tvIivsHd~~~l~~~~ 323 (645)
+|||||+||++| |++|+.+|++++|||||+++|..+.+.+.+.|.+ ...+.|+++||++.+...+
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 799999999999 8999999999999999999999888777765532 2345566666666555555
Q ss_pred CeEE
Q 006442 324 TKIV 327 (645)
Q Consensus 324 d~i~ 327 (645)
++++
T Consensus 202 ~~ii 205 (218)
T 1z6g_A 202 KNYL 205 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=2.4e-22 Score=212.18 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=106.1
Q ss_pred EEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCC
Q 006442 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506 (645)
Q Consensus 427 ~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~t 506 (645)
+++++| | +++++++++.|++|+.++|+||||||||||+++|+|+++|++|.|.++|.+... .... ..
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~~-~~------- 217 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKHH-KN------- 217 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSSC-SS-------
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--cccc-hh-------
Confidence 445555 5 458999999999999999999999999999999999999999999998753110 0000 00
Q ss_pred HHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 507 v~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
.+++ .. . |||+||++||+||.++|++|||||||+ .+. .++|
T Consensus 218 ----------------------~i~~----~~----g--gg~~~r~~la~aL~~~p~ilildE~~~---~e~----~~~l 258 (330)
T 2pt7_A 218 ----------------------YTQL----FF----G--GNITSADCLKSCLRMRPDRIILGELRS---SEA----YDFY 258 (330)
T ss_dssp ----------------------EEEE----EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCS---THH----HHHH
T ss_pred ----------------------EEEE----Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCCh---HHH----HHHH
Confidence 0000 00 0 899999999999999999999999998 232 3344
Q ss_pred Hhc--Cc-eEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 587 SEY--KG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 587 ~~~--~~-tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
+.. ++ |+|+++|+.+ +...|||+++|.+|..
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 332 34 7999999998 6677999999988764
No 141
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=1.5e-19 Score=191.73 Aligned_cols=81 Identities=35% Similarity=0.554 Sum_probs=70.3
Q ss_pred hccCcCcCCHhHHH------HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhC
Q 006442 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 537 ~~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (645)
.++++..||||||| |+++|++++.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888999999999999999999999999999999865 349999999965 56789
Q ss_pred CEEEEEe--CCeE
Q 006442 608 NRVVEVK--GSNL 618 (645)
Q Consensus 608 d~v~~l~--~g~i 618 (645)
|++++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999985 5543
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=1.5e-21 Score=207.51 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=126.6
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhc-CCCC
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEA-LDLD 504 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~-l~~~ 504 (645)
.+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. +++.|+ .. +++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~--~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--GDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS--SSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec--ccccChh
Confidence 4678899999999999999999999999999999999999998876531 122222 22 3445
Q ss_pred CCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHH
Q 006442 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEML 582 (645)
Q Consensus 505 ~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l 582 (645)
.++.+++..+...... ..+++.+|+. +..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+.++.
T Consensus 227 ~tv~e~l~~~~~~~~d---~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hhHHHHHHHHHhCCCH---HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 5788888754321100 1245666763 44567788899 999999999999999 99999 99999988653
Q ss_pred HHHHHhcCceEEEEec---------CHHHHHhhCCEEEEEeCCeEE
Q 006442 583 EEAISEYKGTVITVSH---------DRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 583 ~~~l~~~~~tvi~vsH---------d~~~i~~~~d~v~~l~~g~i~ 619 (645)
.++-++.+.|+|++|| .++.+..++..|.++..|+..
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 3333345789999999 577777888999999988754
No 143
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=4.1e-21 Score=228.76 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=117.9
Q ss_pred CccEEEEe-----EEEEe-CCeeeeeeeeEEEEC-------CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc
Q 006442 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (645)
Q Consensus 95 ~~~i~i~n-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~ 161 (645)
.+.|+++| +++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 34699999 99999 667899999999987 999999999999999999999 988641 2
Q ss_pred eEE-EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHH
Q 006442 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (645)
Q Consensus 162 ~i~-~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (645)
++| ||||++. ..||.++|+
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 355 8999762 345544432
Q ss_pred hhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHH---HHHcc-CCCeEEEEecC
Q 006442 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI-EWLE---GYLGK-QDVPMVIISHD 315 (645)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~-~~l~---~~L~~-~g~tvIivsHd 315 (645)
..+|+. +...+...++|+++++ +++|++++.+|+++||||||+|+|+... ..+. +.|.+ .|+++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 112221 1122234677887775 9999999999999999999999998763 3333 33444 48999999999
Q ss_pred HHHHHhhcCeEEEEcCceeE
Q 006442 316 RAFLDQLCTKIVETEMGVSR 335 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~ 335 (645)
.+++..+||++.++ +|++.
T Consensus 912 ~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHhCCcceee-cCeEE
Confidence 99999999998876 45553
No 144
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.80 E-value=1.1e-22 Score=200.53 Aligned_cols=162 Identities=10% Similarity=-0.044 Sum_probs=98.3
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec------ccchhccchhhcCCCCCCHHHH
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLET 510 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~------~~~~~~q~~~~~l~~~~tv~e~ 510 (645)
.++++| .+|++||+++|+||||||||||+++|+|+++...+.+.+.+.+. ..+|++|+.. .+..+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 457777 79999999999999999999999999999864332221111110 1234444321 1112222222
Q ss_pred HHhh----h--c--cccHH----HHHHH------HhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC
Q 006442 511 VAEA----A--E--DWRID----DIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 511 v~~~----~--~--~~~~~----~~~~~------L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 572 (645)
+... . . ..... .+.+. ++.+|+ ....++.+..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 2100 0 0 01111 22222 444444 345566777777 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhCCEEEEEe
Q 006442 573 HL----DIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 573 ~L----D~~s~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
++ |+..+..+.+++++. +.|+|+||||++++..+||||++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888887654 4599999999999999999999984
No 145
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.80 E-value=7.3e-22 Score=208.54 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=105.9
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHH
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~ 179 (645)
+++++| | .++++++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++... ..+ ... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~-~~~--~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVF-KHH--K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCC-SSC--S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------ccc-ccc--h
Confidence 334444 5 4589999999999999999999999999999999999999999999876421 000 000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCC
Q 006442 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (645)
Q Consensus 180 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~ 259 (645)
+ .+++ +..
T Consensus 217 -~---------------------------------------------------------------~i~~--------~~g 224 (330)
T 2pt7_A 217 -N---------------------------------------------------------------YTQL--------FFG 224 (330)
T ss_dssp -S---------------------------------------------------------------EEEE--------ECB
T ss_pred -h---------------------------------------------------------------EEEE--------EeC
Confidence 0 0000 001
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcCce
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~G~ 333 (645)
|||+||++||+||..+|++|||||||+ .+..+.| ..+...+.|+|+++|+.+ +...|||++.+.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2333333 333333458999999999 677899999998775
No 146
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.80 E-value=3.3e-19 Score=189.70 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=75.6
Q ss_pred ccCcC-cCCHhHHHHHHHHHHHc---------cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhC
Q 006442 538 DRKVS-LLSGGEKARLAFCKFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 538 ~~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~ 607 (645)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+.+.|.+...|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45666 79999999999999999 8999999999999999999999999999877899999995 43 79
Q ss_pred CEEEEEeCCeEEeeCCChhH
Q 006442 608 NRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 608 d~v~~l~~g~i~~~~~~~~~ 627 (645)
|++++|++|++.. .|+.++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTT
T ss_pred CEEEEEECCEEEe-cCCHHH
Confidence 9999999999985 465554
No 147
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=4.7e-22 Score=204.18 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=90.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~ 197 (645)
.++|+||||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+.+.+||.||+..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~--------- 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI--------- 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc---------
Confidence 489999999999999999999999999999887642 3699999999887888998886421100
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccC
Q 006442 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (645)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~ 277 (645)
.. ....+.+ .+.+. ....++.+.+||||||||+++|||++.
T Consensus 75 ------~~-~~~~~~i--------------------------~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 75 ------NN-ENCWEPI--------------------------EKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ------BC-TTCSHHH--------------------------HHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ------cc-HHHHHHH--------------------------HHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 00 0000000 00000 012233457899999999999999886
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
+++||||+.+||+...+.+.. |++. .+||+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccccC
Confidence 999999999999988665554 4444 8999998875443
No 148
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=1.5e-22 Score=201.45 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-----------cchhccchhhcCCCCCC
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYFEQNQAEALDLDKT 506 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-----------~~~~~q~~~~~l~~~~t 506 (645)
.-|+++||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.++. .+|++|+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~-------- 78 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT-------- 78 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------
Confidence 4589999999999999999999999999999999998 5 88988 54331 122232211
Q ss_pred HHHHHHh----------hh--ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH-----HHHHccCCCeEEeeC
Q 006442 507 VLETVAE----------AA--EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-----CKFMVKPSTLLVLDE 569 (645)
Q Consensus 507 v~e~v~~----------~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDE 569 (645)
.+..... .. .......+.++++.... ...+ .+||||||||++| |++++.+|++++|||
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~--~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI--CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE--EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred HHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCc--EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 1111110 00 01123345666665432 1222 4689999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhCCEEE
Q 006442 570 PTNHLDIPSKEMLEEAISEY----------KGTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 570 Pt~~LD~~s~~~l~~~l~~~----------~~tvi~vsHd~~~i~~~~d~v~ 611 (645)
||+++|.++...+.+.+... ..+.|+|+||++.+...+++++
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 99999999998888877643 2356667777766666555544
No 149
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=6.4e-22 Score=216.25 Aligned_cols=175 Identities=16% Similarity=0.139 Sum_probs=130.5
Q ss_pred cEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce---eccc--------
Q 006442 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLP-------- 490 (645)
Q Consensus 423 ~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~---~~~~-------- 490 (645)
++++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. ++..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999997 67899999 999999999999999999999999999999999999999887 3311
Q ss_pred -------chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC
Q 006442 491 -------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (645)
Q Consensus 491 -------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 563 (645)
.++.|.. .......++.+++...... ....+-.....-..+..||+|| |||+|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae~---------~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAED---------FRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHHH---------HHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHHH---------HHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCc
Confidence 1222211 1112234555555433211 1100100001112367899999 999999 88888
Q ss_pred eEEeeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 564 LLVLDEPTNHLDIPSKEMLEEAISEYK------G------TVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 564 lLlLDEPt~~LD~~s~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+ |+|||+.+...+.+++.+.. + ||+++|||++ ..+||++++|.+|+++.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 8 99999999999999998641 3 8999999998 66799999999999874
No 150
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=1.2e-20 Score=211.79 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=122.6
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCC
Q 006442 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (645)
Q Consensus 97 ~i~i~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (645)
.++++++++.|++ ..+| +..|++|++++|+|+||||||||+++++|..+|. |+ .-+.|++|++..
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH---
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH---
Confidence 3566777766543 1233 3489999999999999999999999999998874 53 114566676420
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (645)
++.++.. ... + ..+ + +...|+. ...+.
T Consensus 323 -~l~~~~~---------------------~~g----------------------~---~~~----~-~~~~g~~-~~~~~ 349 (525)
T 1tf7_A 323 -QLLRNAY---------------------SWG----------------------M---DFE----E-MERQNLL-KIVCA 349 (525)
T ss_dssp -HHHHHHH---------------------TTS----------------------C---CHH----H-HHHTTSE-EECCC
T ss_pred -HHHHHHH---------------------HcC----------------------C---CHH----H-HHhCCCE-EEEEe
Confidence 1111100 000 0 001 1 1122332 34566
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHHHH---ccCCCeEEEEecCH----------H
Q 006442 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGYL---GKQDVPMVIISHDR----------A 317 (645)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~-----~~~~l~~~L---~~~g~tvIivsHd~----------~ 317 (645)
.+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.+++ ++.|+|||++||+. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 78999999999999999999999999999 99999998 887776654 56799999999999 7
Q ss_pred HHHhhcCeEEEEcCce
Q 006442 318 FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (645)
.+..+||+|+++++|.
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 8889999999998875
No 151
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=2e-22 Score=211.04 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=126.8
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEE-----------------------EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~-----------------------i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
..|++++|++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|..|
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 3589999999995 566666654 899999999999999999999999999998766
Q ss_pred EEEECceecccchhccchhhcCCCCCCHHHHHHhhh-----ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 480 EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA-----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 480 ~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
. ...+++.|+ ..+.+. |+.+|+.... .....+.+.+.|+.++ . ...+..+..|||||+||+++
T Consensus 120 ~-------~~v~~v~qd--~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 120 H-------PRVDLVTTD--GFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp C-------CCEEEEEGG--GGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEE
T ss_pred C-------CeEEEEecC--ccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhh
Confidence 3 123445543 233344 7888765321 1223455677777776 2 33456778999999999999
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH-hhCCEEEEEeCC
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK-QIVNRVVEVKGS 616 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~d~v~~l~~g 616 (645)
|++++.+|+|||||||+..+|... ..+.++-..+|+|+|+.+.+. .+.+|.+.+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998622 123343346788899987753 345666555443
No 152
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=4.1e-20 Score=220.20 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCcEEEEEe-----eeeee-CCeeceeeeeEEEec-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 421 ~~~~i~~~~-----v~~~y-~~~~~l~~vsl~i~~-------Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
..++|+++| |++.| +++.++++++|++++ |++++|+||||||||||||+| |++.+..
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--------- 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--------- 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh---------
Confidence 345799999 99999 667899999999987 999999999999999999999 9876421
Q ss_pred cccc-hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE
Q 006442 488 VLPN-YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 488 ~~~~-~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 566 (645)
..+ |++|... ..++.+++ +.++|.. +......+.+|+++++ +++|++++.+|+++|
T Consensus 817 -qiG~~Vpq~~~-----~l~v~d~I---------------~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 -QMGCYVPAEVC-----RLTPIDRV---------------FTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp -TTTCCEESSEE-----EECCCSBE---------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred -heeEEeccCcC-----CCCHHHHH---------------HHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 122 4554321 12232222 1233442 3334556678888775 999999999999999
Q ss_pred eeCCCCCCCHHHH-HHHHHHHHh---c-CceEEEEecCHHHHHhhCCEEEEEeCCeEE
Q 006442 567 LDEPTNHLDIPSK-EMLEEAISE---Y-KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 567 LDEPt~~LD~~s~-~~l~~~l~~---~-~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~ 619 (645)
|||||+|+|+... ..+..+|+. . +.++|++|||.+++..++|++++++ |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 9999999998874 434555543 2 5699999999999999999988874 6665
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=6.2e-21 Score=202.43 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=124.2
Q ss_pred ccEEEEeEEEEeC-CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC--------------
Q 006442 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (645)
Q Consensus 96 ~~i~i~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------------- 160 (645)
+.++++++++.|+ +.++++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3588899999997 67899999 9999999999999999999999999999999999988876542
Q ss_pred ---ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHH
Q 006442 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (645)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (645)
..+.+++|.. .+..+.+...+ ..+ .
T Consensus 123 ~~~~~v~~~~~~~-----~~~~~r~~~~~--------------~~~------------------------------~--- 150 (347)
T 2obl_A 123 TLSKCVLVVTTSD-----RPALERMKAAF--------------TAT------------------------------T--- 150 (347)
T ss_dssp HHTTEEEEEECTT-----SCHHHHHHHHH--------------HHH------------------------------H---
T ss_pred hhhceEEEEECCC-----CCHHHHHHHHH--------------HHH------------------------------H---
Confidence 1244554431 11111111000 000 0
Q ss_pred HHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 006442 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (645)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-----~g~----- 307 (645)
+.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 151 -~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 151 -IAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp -HHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred -HHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 00000000100000113478999999 899999 688887 999999999999998853 355
Q ss_pred eEEEEecCHHHHHhhcCeEEEEcCcee
Q 006442 308 PMVIISHDRAFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 308 tvIivsHd~~~l~~~~d~i~~l~~G~~ 334 (645)
||+++|||++ ..+||+++.+.+|++
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHI 244 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEE
Confidence 8999999999 678999999999986
No 154
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=2.3e-20 Score=198.06 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=126.9
Q ss_pred cEEEEEeeeeeeC-CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--chhccchhh
Q 006442 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--NYFEQNQAE 499 (645)
Q Consensus 423 ~~i~~~~v~~~y~-~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--~~~~q~~~~ 499 (645)
++++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+... ..+......
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4589999999997 67899999 9999999999999999999999999999999999999887754210 000000000
Q ss_pred --------cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 500 --------ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 500 --------~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
....+.+..+.+..... ...+.+.+...+-.-...-..+..||+|| |||++| +.+|++ |
T Consensus 123 ~~~~~v~~~~~~~~~~~~r~~~~~~---~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 123 TLSKCVLVVTTSDRPALERMKAAFT---ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp HHTTEEEEEECTTSCHHHHHHHHHH---HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhceEEEEECCCCCHHHHHHHHHH---HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 00011222222111100 00011111111100000115678999999 899999 577877 9
Q ss_pred CCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 572 NHLDIPSKEMLEEAISEY-----KG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
+|||+.....+.+++++. +. ||+++|||++ ..+||++++|.+|+++.
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 999999999999999865 23 8999999998 67899999999999974
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=2.1e-19 Score=186.74 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=110.5
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccch-hhcCCCCCCHHHHHHhhh
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~~ 515 (645)
++|+++++.|++|++++|+||||||||||++.|+|.+.|.+| .|.+.+.......+.... ........+..+++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 479999999999999999999999999999999999998877 665433222111110000 000011112222222111
Q ss_pred c-ccc-HHHHHHHHhhcCCChhhhccCcCcCCHhH-HHHHHHHHHHccCCCeEEeeCCCC---C---CCH-HHHHHHHHH
Q 006442 516 E-DWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGE-KARLAFCKFMVKPSTLLVLDEPTN---H---LDI-PSKEMLEEA 585 (645)
Q Consensus 516 ~-~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPt~---~---LD~-~s~~~l~~~ 585 (645)
. ... ...+..+++..++. ....+..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 0 000 11223334333331 233446789999 66666 999999999999999999 4 454 455566666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhCCEEEEEeCCeE
Q 006442 586 IS----EYKGTVITVSHDR--Y--------------------FVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 586 l~----~~~~tvi~vsHd~--~--------------------~i~~~~d~v~~l~~g~i 618 (645)
|+ +.+.|||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3467999999994 5 78889999999998874
No 156
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.77 E-value=9.3e-20 Score=211.04 Aligned_cols=144 Identities=20% Similarity=0.180 Sum_probs=111.2
Q ss_pred ccEEEEeEEEEe---CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEeccCc
Q 006442 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 96 ~~i~i~nls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
..|.++++..-. ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+... ....+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~--- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG--- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---
Confidence 348888884333 335789999999 99999999999999999999999874 678875422 2345777776
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (645)
++...++.||+.
T Consensus 622 i~~~~~~~d~l~-------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 IYTRIGASDDLA-------------------------------------------------------------------- 633 (765)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred hhccCCHHHHHH--------------------------------------------------------------------
Confidence 233445544431
Q ss_pred cccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHccCCCeEEEEecCHHHHH
Q 006442 252 DGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL--~~~p~iLLLDEP---ts~LD~~~~-~~l~~~L~~~g~tvIivsHd~~~l~ 320 (645)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+. ..+.+.|.+.|.|+|++||+.++..
T Consensus 634 ------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 634 ------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp -------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred ------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 24689999999999999 999999999999 999999886 4577777667899999999998864
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=4e-20 Score=187.05 Aligned_cols=166 Identities=12% Similarity=0.129 Sum_probs=100.6
Q ss_pred CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhH
Q 006442 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (645)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~ 187 (645)
++.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443322234699999995 5567798887642110
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHH
Q 006442 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (645)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (645)
. . .. .+.+ ..+ ...+.+.+..+. ...++.+..||+||+||
T Consensus 85 ~--------------~-~~-~~~~-----------------~~~----~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q--------------Y-NF-DHPD-----------------AFD----NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C--------------C-CT-TSGG-----------------GBC----HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C--------------C-CC-CCcc-----------------ccc----HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 0 00 0000 000 011112222221 23456678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH-HhhcCeE
Q 006442 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL-DQLCTKI 326 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l-~~~~d~i 326 (645)
+++ ++++.+|+++|||||+...|.. +.+ ..+.+|+++||+...+ ..+++.+
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999998888764 222 2478999999974444 4455544
No 158
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=8.9e-21 Score=194.64 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------chhccchhhcCCCCCCHHHHHHhhhccc---cHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW---RID 521 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-------~~~~q~~~~~l~~~~tv~e~v~~~~~~~---~~~ 521 (645)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. +++.|. ..+.+.+|+.|++.++.... ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~--~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEE--GGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeec--CCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999999999999999876521 344443 34555667777776543211 112
Q ss_pred HHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 006442 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~ 601 (645)
.+...+. ....+..+.+||||||||+++|||++. +++|||||++||+...+.+.. +.+. .+||+|.|..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 3334433 344566778899999999999999886 999999999999988555544 4444 78999988876
Q ss_pred HH
Q 006442 602 FV 603 (645)
Q Consensus 602 ~i 603 (645)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 43
No 159
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=1.1e-19 Score=188.96 Aligned_cols=180 Identities=22% Similarity=0.170 Sum_probs=109.5
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~ 188 (645)
.++|+++++.|++|++++|+|+||||||||++.|+|...|.+| .|. |+..+. +..+ +.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~---------~~~~e~------~~~~-~~----- 80 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG---------LAMLEE------SVEE-TA----- 80 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE---------EEESSS------CHHH-HH-----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE---------EEeCcC------CHHH-HH-----
Confidence 3579999999999999999999999999999999999988877 443 333221 1111 10
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH-HHH
Q 006442 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (645)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq-kqR 267 (645)
.++....... .......+ .. . .+......+.+.+++...++ .....+.++|.+| +||
T Consensus 81 --------~r~~~~~~~~--~~~~~~~l-~~-~-------~~~~~~~~~~~~~~l~~~~l---~i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 81 --------EDLIGLHNRV--RLRQSDSL-KR-E-------IIENGKFDQWFDELFGNDTF---HLYDSFAEAETDRLLAK 138 (296)
T ss_dssp --------HHHHHHHTTC--CGGGCHHH-HH-H-------HHHHTHHHHHHHHHHSSSCE---EEECCCCSCCHHHHHHH
T ss_pred --------HHHHHHHcCC--Chhhcccc-cc-C-------CCCHHHHHHHHHHHhccCCE---EEECCCCCCCHHHHHHH
Confidence 0000000000 00000000 00 0 00111222334444443332 1222346789998 677
Q ss_pred HHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 006442 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts---~---LD~-~~~~~l~~~L----~~~g~tvIivsHd~--~----------------- 317 (645)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|+|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 76 999999999999999999 4 454 4445555544 34699999999995 5
Q ss_pred ---HHHhhcCeEEEEcCce
Q 006442 318 ---FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ---~l~~~~d~i~~l~~G~ 333 (645)
.+.++||+|+++..|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998775
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=1.9e-20 Score=191.21 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=106.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCceEEEEeccCccCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (645)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +.|++|.+..+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~--- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSI--- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSE---
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCccee---
Confidence 455566542 5899999 9999999999999999999999999999998 9999887543 34554432100
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
+ . -..+|+..
T Consensus 75 ---------v--------------------------------------------~-----------q~~~gl~~------ 84 (261)
T 2eyu_A 75 ---------V--------------------------------------------N-----------QREVGEDT------ 84 (261)
T ss_dssp ---------E--------------------------------------------E-----------EEEBTTTB------
T ss_pred ---------e--------------------------------------------e-----------HHHhCCCH------
Confidence 0 0 00223221
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
.+| |++||+||..+|++||||||| |+++...+.+.. ..|.+|++++|+.+ +..+||+++.+..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 222 899999999999999999999 999877666554 45899999999988 5678898887643
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=5.1e-20 Score=188.10 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=102.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCC
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDL 503 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~ 503 (645)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ .|+.++.. .+
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i--~~~~~~~~-~~-- 74 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI--EYVFKHKK-SI-- 74 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC--CSCCCCSS-SE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc--eeecCCcc-ee--
Confidence 456666643 5899999 9999999999999999999999999999998 99999987653 23332210 00
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
... ..+++.. ..| |++||++|..+|++|+||||| |+++...+.
T Consensus 75 -----------v~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----------VNQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----------EEE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----------eeH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 000 1233311 122 899999999999999999999 999876655
Q ss_pred HHHHhcCceEEEEecCHHHHHhhCCEEEEE
Q 006442 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEV 613 (645)
Q Consensus 584 ~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l 613 (645)
+.. ..+.+|++++|+.+ +..+|||++.|
T Consensus 118 ~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 118 RAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 544 34679999999987 45667765443
No 162
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.5e-18 Score=160.20 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred ccccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 006442 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLA------raL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~ 323 (645)
.++++.+||||||||++|| |||+.+|++|||||||+|||+.++.++.+.+++ .|.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 5788999999999999876 899999999999999999999999999988753 4789999999994 56899
Q ss_pred CeEEEE--cCcee
Q 006442 324 TKIVET--EMGVS 334 (645)
Q Consensus 324 d~i~~l--~~G~~ 334 (645)
|+++++ ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45544
No 163
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=6.8e-18 Score=184.73 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=65.9
Q ss_pred ccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 006442 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~g~tvIivsHd~~~l~~~~d~i~ 327 (645)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|++ .+.++|++||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999988854 367999999997665 5799999
Q ss_pred EEc
Q 006442 328 ETE 330 (645)
Q Consensus 328 ~l~ 330 (645)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 164
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=3.2e-18 Score=159.52 Aligned_cols=81 Identities=32% Similarity=0.532 Sum_probs=72.0
Q ss_pred hccCcCcCCHhHHHHHHHH------HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhC
Q 006442 537 LDRKVSLLSGGEKARLAFC------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIV 607 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~ 607 (645)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4688999999999999876 8999999999999999999999999999999875 359999999995 56789
Q ss_pred CEEEEE--eCCeE
Q 006442 608 NRVVEV--KGSNL 618 (645)
Q Consensus 608 d~v~~l--~~g~i 618 (645)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.73 E-value=3.9e-17 Score=175.29 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=66.7
Q ss_pred ccCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 006442 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 255 ~~~~~LSGGqkqRv------aLAraL~~~-p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~ 325 (645)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|++ .+.+||+|||+.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 999999999999999999999998864 2468999999987 5789999
Q ss_pred EEEEc
Q 006442 326 IVETE 330 (645)
Q Consensus 326 i~~l~ 330 (645)
+++++
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=1.9e-19 Score=174.85 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=96.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC--------CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHH
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~--------~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~ 194 (645)
|++++|+||||||||||+++|+|+++ ++| |.+++. ...+||++|+.. . + .++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGP------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEE-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eeh-------------
Confidence 78999999999999999999999998 889 776542 246888888741 1 0 011
Q ss_pred HHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc------ccccccCCCCChHHHHHH
Q 006442 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (645)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~------~~~~~~~~~LSGGqkqRv 268 (645)
+..+++.. +...++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344567999999998
Q ss_pred -HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcC
Q 006442 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCT 324 (645)
Q Consensus 269 -aLAr---aL~~~p~iLLLDE--Pts~LD~~~~~~l~~~L~~~g~tvI---ivsHd~--~~l~~~~d 324 (645)
+|++ |+..+|+|||||| |++.+|....+.|.++++....+|| .||||. .+++++++
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~ 159 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN 159 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence 4455 6899999999999 9999999999999999986544442 345987 56666554
No 167
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=2.8e-20 Score=180.77 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=104.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc--------chhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~--------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ++..|.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~----~g~----------------- 57 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL----SGT----------------- 57 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET----TSC-----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec----ccc-----------------
Confidence 78999999999999999999999999 889 8887754411 1222111 000
Q ss_pred HHHHHHhhcCCChh------hhccCcCcCCHhHHHHH-HHHH---HHccCCCeEEeeC--CCCCCCHHHHHHHHHHHHhc
Q 006442 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKARL-AFCK---FMVKPSTLLVLDE--PTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 522 ~~~~~L~~~~l~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--Pt~~LD~~s~~~l~~~l~~~ 589 (645)
...+..+++... ...++...+|+|||+++ ++++ |++.+|++||||| ||+.+|....+.|.+++..+
T Consensus 58 --~~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 58 --RGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp --EEEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred --eehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 001222222111 23444557999999988 4455 6899999999999 99999999999999999876
Q ss_pred CceEE---EEecCH--HHHHhhCCEEEEEeCCeEEeeC-CChhHHHHHH
Q 006442 590 KGTVI---TVSHDR--YFVKQIVNRVVEVKGSNLQDYA-GDYNQVQSLW 632 (645)
Q Consensus 590 ~~tvi---~vsHd~--~~i~~~~d~v~~l~~g~i~~~~-~~~~~~~~~~ 632 (645)
..+|| .||||. +++.++ ..+++|++...+ .+.+...+..
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i----~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEI----RNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHH----HTTCCSEEEECCSSSGGGHHHHH
T ss_pred CcEEEEEeecCCCCchHHHHHH----eecCCcEEEEeChHhHHHHHHHH
Confidence 55553 556987 555554 444667776544 4666554433
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=5.1e-19 Score=175.95 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred ChHH-HHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH----------------HHHHHHHHccCCCeEEEEec--
Q 006442 261 SSGW-QMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDT----------------IEWLEGYLGKQDVPMVIISH-- 314 (645)
Q Consensus 261 SGGq-kqRvaLAraL~~-------~p~iLLLDEPts~LD~~~----------------~~~l~~~L~~~g~tvIivsH-- 314 (645)
++++ ++.+..+++++. +|++|+|||||++||+.. ...|.++.++.|+|||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4443 333555555555 999999999999999831 12222333456999999999
Q ss_pred --CHHHHHhhcCeEEEEcCc
Q 006442 315 --DRAFLDQLCTKIVETEMG 332 (645)
Q Consensus 315 --d~~~l~~~~d~i~~l~~G 332 (645)
+...+..+||+++.++.|
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp ---------CCSEEEEEEEC
T ss_pred cCcchhhHhhceEEEEEEec
Confidence 555599999999999865
No 169
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.73 E-value=6.2e-18 Score=199.18 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=109.4
Q ss_pred CcEEEEEeeeeee-----CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCeeEEEECceec
Q 006442 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 422 ~~~i~~~~v~~~y-----~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l--------~g~~~p~~G~i~~~g~~~ 488 (645)
...|++++...-+ +++.++++++|++++|++++|+||||||||||||+| .|.+-|..+...
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~------ 702 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV------ 702 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc------
Confidence 3457777765443 235689999999999999999999999999999999 666555443210
Q ss_pred ccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEE
Q 006442 489 LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLV 566 (645)
Q Consensus 489 ~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLl 566 (645)
+.+. .++.++|.. +.....+|+|+++++.+|+++ +.+|+++|
T Consensus 703 --~~~d------------------------------~i~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 703 --SIVD------------------------------CILARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --ECCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --hHHH------------------------------HHHHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0000 112223331 122334788888888888888 99999999
Q ss_pred eeCCCCCCCHHHHHHH-HHHHH---h-cCceEEEEecCHHHHHhhCCEEEEEeCCeEEe
Q 006442 567 LDEPTNHLDIPSKEML-EEAIS---E-YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (645)
Q Consensus 567 LDEPt~~LD~~s~~~l-~~~l~---~-~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~ 620 (645)
|||||+|+|+.....+ ..+++ + .+.++|++|||.++. .+||++..+.+|++..
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA 804 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence 9999999999887666 33333 3 367999999997765 6899998888888763
No 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=5.9e-20 Score=191.62 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=83.8
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC-CCCCccEEEEcCC-------CceEEEEeccCcc
Q 006442 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKS-------NMKIAFLSQEFEV 172 (645)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~-~~p~~G~I~~~~~-------~~~i~~v~Q~~~~ 172 (645)
.|++++|+++.++++++|+| +|+|+||+|||||+++|+|. ..|++| |.+.+. ...++|++|+...
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 888888 544321 1247888887766
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
...+|++|+.... .... . .+.+ . .+...+. +.
T Consensus 75 ~~~ltv~Dt~g~~--~~~~------~-~e~~----------~-------------------~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYG--DAIN------C-RDCF----------K-------------------TIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC--------------------C----------T-------------------THHHHHH----------HH
T ss_pred ccCcchhhhhhhh--hhcC------c-HHHH----------H-------------------HHHHHHH----------HH
Confidence 5666777764311 0000 0 0000 0 0000000 11
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~-LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23446789999999999999986 9999999985 9998865554443334788899999974
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.72 E-value=4.9e-19 Score=178.32 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHH---ccCCCeEEEEecCHHHH---------Hhhc
Q 006442 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-----LDTIEWLEGYL---GKQDVPMVIISHDRAFL---------DQLC 323 (645)
Q Consensus 261 SGGqkqRvaLAraL~~~p~iLLLDEPts~LD-----~~~~~~l~~~L---~~~g~tvIivsHd~~~l---------~~~~ 323 (645)
+.++..+...+..-..+|++++|||||++|| +..++.+.+++ ++.|+|||++||+.+.+ ..+|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 4455555555555568999999999999997 55555565554 55799999999999998 6788
Q ss_pred -CeEEEEcC
Q 006442 324 -TKIVETEM 331 (645)
Q Consensus 324 -d~i~~l~~ 331 (645)
|+|++++.
T Consensus 199 aD~vi~l~~ 207 (251)
T 2ehv_A 199 ARGVIVLDL 207 (251)
T ss_dssp CSEEEEEEE
T ss_pred eeEEEEEee
Confidence 99999963
No 172
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=8.4e-18 Score=198.03 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=106.2
Q ss_pred cEEEEeEEEEe-----CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHH--------HcCCCCCccEEEEcCCCceE
Q 006442 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMKI 163 (645)
Q Consensus 97 ~i~i~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l--------~G~~~p~~G~I~~~~~~~~i 163 (645)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+| .|..-|..+.. +
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------~ 702 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------V 702 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------E
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------c
Confidence 47777765444 234689999999999999999999999999999999 55544433211 1
Q ss_pred EEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc
Q 006442 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (645)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (645)
+.+. +++
T Consensus 703 ~~~d-------------------------------------------------------------------------~i~ 709 (934)
T 3thx_A 703 SIVD-------------------------------------------------------------------------CIL 709 (934)
T ss_dssp ECCS-------------------------------------------------------------------------EEE
T ss_pred hHHH-------------------------------------------------------------------------HHH
Confidence 1110 112
Q ss_pred hhcCCCcccccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecCH
Q 006442 244 PELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHDR 316 (645)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL--~~~p~iLLLDEPts~LD~~~~~~l----~~~L~~-~g~tvIivsHd~ 316 (645)
..+|+. +.....+|+|+++++.+|+++ +.+|+++||||||+|||+.....+ .+.|.+ .|+|+|++||+.
T Consensus 710 ~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 710 ARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp EECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred HhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 222321 122356788888888888888 999999999999999999876554 344443 589999999997
Q ss_pred HHHHhhcCeEEEEcCcee
Q 006442 317 AFLDQLCTKIVETEMGVS 334 (645)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~ 334 (645)
+.. .+||++..+.+|++
T Consensus 786 el~-~lad~~~~v~ng~v 802 (934)
T 3thx_A 786 ELT-ALANQIPTVNNLHV 802 (934)
T ss_dssp GGG-GGGGTCTTEEEEEE
T ss_pred HHH-HHhcccceeEeeEE
Confidence 655 68998877777764
No 173
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.72 E-value=6.2e-19 Score=178.32 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhh
Q 006442 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (645)
Q Consensus 435 ~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~ 514 (645)
+++.+|+++||++++|+++||+||||||||||+++|+|++ |.+.++...-..+++.+. .+....++.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d---~~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQD---RFYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGG---GGBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCC---cCccccCHhHhhhhh
Confidence 4567999999999999999999999999999999999976 333222100012344443 234467888876543
Q ss_pred hc--------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
.. .+..+.+.+.|+.+ .+..+.++..||+||+||+++ ++++.+|+++|||||....|.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 21 12233455566543 233467788999999999988 6888999999999998887754 2
Q ss_pred Hh-cCceEEEEecCHH-HHHhhCCEEEEEeCCe
Q 006442 587 SE-YKGTVITVSHDRY-FVKQIVNRVVEVKGSN 617 (645)
Q Consensus 587 ~~-~~~tvi~vsHd~~-~i~~~~d~v~~l~~g~ 617 (645)
.+ .+.+|+++||+.. ....+++++ ++|+
T Consensus 151 ~~~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 151 RDMFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HTTCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HHhcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 22 3679999999744 444444444 5554
No 174
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.71 E-value=3.3e-17 Score=179.30 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=66.6
Q ss_pred cCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhCCEEE
Q 006442 539 RKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 539 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~d~v~ 611 (645)
+++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 334569999999999999999 5899999999999999999999999998763 4999999997665 5799999
Q ss_pred EEe
Q 006442 612 EVK 614 (645)
Q Consensus 612 ~l~ 614 (645)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 175
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=2.5e-18 Score=201.91 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=97.8
Q ss_pred cEEEEeEEEEe-------CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEec
Q 006442 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q 168 (645)
.|.+++...-. ++..+++|++|++++|++++|+||||||||||||+|++..- +..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 47777765433 23569999999999999999999999999999999975421 111110 000001111111
Q ss_pred cCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCC
Q 006442 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (645)
Q Consensus 169 ~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (645)
+++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 11222222
Q ss_pred CcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-H---HH-ccCCCeEEEEecCHHHH
Q 006442 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE-G---YL-GKQDVPMVIISHDRAFL 319 (645)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~-~---~L-~~~g~tvIivsHd~~~l 319 (645)
. +...+...++|+||+|++.++++ +.+|+++||||||+|||+.....+. . .| ++.|+|||++||+.+..
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 1 22234467899999999999999 8999999999999999998766554 3 33 34689999999998765
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=1.1e-17 Score=168.35 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=101.1
Q ss_pred EEEEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH--cCCCCCeeEEEECceecccchhccchhhc
Q 006442 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM--GLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (645)
Q Consensus 424 ~i~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~--g~~~p~~G~i~~~g~~~~~~~~~q~~~~~ 500 (645)
++++++++..++.- .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++..... ...+.. ..
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~ 80 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM-AS 80 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH-HT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH-HH
Confidence 35666777766531 23333 68999999999999999999999999 7656667777776543211 111000 00
Q ss_pred CCCCCCHHHHHHhhhcc-ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC----
Q 006442 501 LDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD---- 575 (645)
Q Consensus 501 l~~~~tv~e~v~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD---- 575 (645)
+ .....+........ ........... ...........+.++......+.+-..+|++|+|||||++||
T Consensus 81 ~--g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d 153 (251)
T 2ehv_A 81 F--GWDFEKYEKEGKIAIVDGVSSVVGLP-----SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE 153 (251)
T ss_dssp T--TCCHHHHHHTTSEEEEC------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS
T ss_pred c--CCChHHHhhcCCEEEEEccccccccc-----cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC
Confidence 0 11111111110000 00000000000 000011112244556555555555668999999999999997
Q ss_pred -HHHHHHHHHHHHh---cCceEEEEecCHHHH---------HhhC-CEEEEEe
Q 006442 576 -IPSKEMLEEAISE---YKGTVITVSHDRYFV---------KQIV-NRVVEVK 614 (645)
Q Consensus 576 -~~s~~~l~~~l~~---~~~tvi~vsHd~~~i---------~~~~-d~v~~l~ 614 (645)
...++.+.++++. .+.|||+|||+++.+ ..+| |+|++|+
T Consensus 154 ~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 6666667776654 467999999999998 6788 9999995
No 177
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=8.8e-18 Score=194.54 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=103.4
Q ss_pred EEEEEeeeeee---CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCeeEEEECceecccchhccchhh
Q 006442 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (645)
Q Consensus 424 ~i~~~~v~~~y---~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~q~~~~ 499 (645)
.|++++...-. +++.+++++||+ |++++|+||||||||||||+|+|+.. +..|.+.-.. ....+++.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~-~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh-ccceeeHHH----
Confidence 47888774433 346789999999 99999999999999999999999874 5666532110 001112211
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCC---CCCC
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEP---TNHL 574 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---t~~L 574 (645)
+....++.+++ ...+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 622 -i~~~~~~~d~l-----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 622 -IYTRIGASDDL-----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp -EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred -hhccCCHHHHH-----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11111222211 123799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHHhcCceEEEEecCHHHHH
Q 006442 575 DIPSK-EMLEEAISEYKGTVITVSHDRYFVK 604 (645)
Q Consensus 575 D~~s~-~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (645)
|..+. ..+.+.|.+.+.|+|++|||.+++.
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99886 5688888776779999999998864
No 178
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.69 E-value=5.7e-17 Score=161.05 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=90.3
Q ss_pred EEEeeeeeeCCe-eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CeeEEEECceeccc----chh
Q 006442 426 TIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNVLP----NYF 493 (645)
Q Consensus 426 ~~~~v~~~y~~~-~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-------~~G~i~~~g~~~~~----~~~ 493 (645)
+++.++..++.- .++.+ .|++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+... .++
T Consensus 3 ~~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~ 79 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 79 (231)
T ss_dssp CCCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred cCCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHH
Confidence 344555555321 23333 6899999999999999999999999996554 33466666543110 011
Q ss_pred ccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHH-HHHHHHHHHcc-------CCCeE
Q 006442 494 EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-ARLAFCKFMVK-------PSTLL 565 (645)
Q Consensus 494 ~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk-qrv~lAral~~-------~p~lL 565 (645)
.|. ..+.+ + ..++.+.+ ...++.+++ +.+..++.++. +|++|
T Consensus 80 ~~~--~~~~~-----------------~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 80 AQN--RGLDP-----------------D---EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp HHH--TTSCH-----------------H---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred HHH--cCCCH-----------------H---HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 111 01100 0 11111111 112344433 33555555544 89999
Q ss_pred EeeCCCCCCCHHH-------H-----HHHHHHH----HhcCceEEEEec----CHHHHHhhCCEEEEEeCC
Q 006442 566 VLDEPTNHLDIPS-------K-----EMLEEAI----SEYKGTVITVSH----DRYFVKQIVNRVVEVKGS 616 (645)
Q Consensus 566 lLDEPt~~LD~~s-------~-----~~l~~~l----~~~~~tvi~vsH----d~~~i~~~~d~v~~l~~g 616 (645)
+|||||+++|+.. . ..+.+.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999841 1 1333333 345779999999 555599999999999864
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=2.3e-19 Score=187.14 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC-CCCCeeEEEECceeccc-------chhccchhh
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNVLP-------NYFEQNQAE 499 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~-------~~~~q~~~~ 499 (645)
+||+++|+++.++++++|+| +|+|+||+|||||++.|+|. +.|++| +.++|.++.+ ++..+. .
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~--~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE--R 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC--C
Confidence 47889999899999999998 99999999999999999998 888888 7666544321 111111 1
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCC-CCHHH
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH-LDIPS 578 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~-LD~~s 578 (645)
.....++++|++.++......+....+... + .+..++.+.++|||||||+.+|||++ +|++||||++ ||+..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 222233444443322110000000111111 0 12345777889999999999999986 9999999985 99988
Q ss_pred HHHHHHHHHhcCceEEEEecCHH
Q 006442 579 KEMLEEAISEYKGTVITVSHDRY 601 (645)
Q Consensus 579 ~~~l~~~l~~~~~tvi~vsHd~~ 601 (645)
.+.+.++-...+.++|+++||+.
T Consensus 146 ~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 VAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHhcCCEEEEEEeCCCC
Confidence 64444332223568999999974
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=6.6e-20 Score=180.62 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=103.4
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccC--CCCCHHHHHHHhhHHHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~--~~~Tv~eni~~~~~~~~~~~~~~~ 197 (645)
.++|+++||+||||||||||+++|+|++.| .++|++|++.+. ...|+.++....+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~--------- 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDH--------- 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS---------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCC---------
Confidence 578999999999999999999999998765 488999998664 345777764321110
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH----HHHHHHHHH
Q 006442 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (645)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq----kqRvaLAra 273 (645)
.. ....+++.+.+..+++. +..++++.++|+|| +||+++|++
T Consensus 62 ------~~---------------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 62 ------PD---------------------------AFDLALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ------GG---------------------------GBCHHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSE
T ss_pred ------hh---------------------------hhhHHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcE
Confidence 00 00011223334444443 34456789999996 478899999
Q ss_pred HccCCCEEEEeCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 006442 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (645)
Q Consensus 274 L~~~p~iLLLDEPts~-------LD~~~~~~l~~~L~----~~g~tvIivsHd~~ 317 (645)
++.+|+++++||||++ ||+.....+.+.++ +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89988777776654 35899999999843
No 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=2.1e-17 Score=194.17 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=100.3
Q ss_pred EEEEEeeeeee-------CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhcc
Q 006442 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQ 495 (645)
Q Consensus 424 ~i~~~~v~~~y-------~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q 495 (645)
.|.+++...-. +++.++++++|++++|++++|+||||||||||||+|+++.-.. .|. +++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----------~vpa 708 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-----------YVPA 708 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----------CBSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----------cccc
Confidence 57777755432 2467899999999999999999999999999999997642110 000 0000
Q ss_pred chhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 496 ~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
... .+.. +..++.++++ .+......+.+|+|++|++.++++ +.+|+||||||||+|||
T Consensus 709 ~~~-~i~~-------------------~d~i~~~ig~-~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 709 EEA-TIGI-------------------VDGIFTRMGA-ADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp SEE-EEEC-------------------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred hhh-hhhH-------------------HHHHHHhCCh-HHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 000 0000 0012233443 234456678899999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHh----cCceEEEEecCHHHHHhhCCE
Q 006442 576 IPSKEMLE-EAISE----YKGTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 576 ~~s~~~l~-~~l~~----~~~tvi~vsHd~~~i~~~~d~ 609 (645)
+.....+. .+++. .+.|||++|||.+.+. ++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence 99887765 44442 3569999999987763 4443
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=8.7e-18 Score=175.13 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCCCHHHHHHHh
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFMSA 185 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~eni~~~ 185 (645)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..++|++|++...+..++++|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987643 2488999988766666777776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHH
Q 006442 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (645)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (645)
.. .. .+ ..+++..|... ..++ .++..++
T Consensus 181 ~~----------------~~------------------------~d--------~~llDt~G~~~-~~~~---~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------RG------------------------YD--------LLFVDTAGRLH-TKHN---LMEELKK 208 (304)
T ss_dssp HH----------------HT------------------------CS--------EEEECCCCCCT-TCHH---HHHHHHH
T ss_pred Hh----------------CC------------------------CC--------EEEecCCCCCC-chHH---HHHHHHH
Confidence 00 00 00 01233334321 1122 2344558
Q ss_pred HHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 266 qRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
||++||||++.+|+ +|.|| |+++.+. ...+..+.+..+.|+|++||+.+
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 56666 5555442 23333333445899999999843
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=2.4e-16 Score=156.49 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred eeceeeeeE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccch-hhcCCCCCCHHHHHHhh
Q 006442 437 RLLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEA 514 (645)
Q Consensus 437 ~~~l~~vsl-~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~ 514 (645)
.+.|+++.. .|++|++++|+||||||||||++.|++...+.+|.+.+.+.+.....+.... .....+......++. .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLI-I 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEE-E
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEE-E
Confidence 345777776 7999999999999999999999999998877777776644322111100000 000000000000000 0
Q ss_pred hccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCC--CHHHHHHHHHHHHh--
Q 006442 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHL--DIPSKEMLEEAISE-- 588 (645)
Q Consensus 515 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~L--D~~s~~~l~~~l~~-- 588 (645)
..... ..++ ... .....|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 88 ~~~~~--------~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~ 154 (235)
T 2w0m_A 88 IDALM--------KEKE--DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL 154 (235)
T ss_dssp EECCC--------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH
T ss_pred Eeccc--------cccC--cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH
Confidence 00000 0000 000 112359999999888888888999 99999999888 99887777776654
Q ss_pred --cCceEEEEecCH--------HHHHhhCCEEEEEeCC
Q 006442 589 --YKGTVITVSHDR--------YFVKQIVNRVVEVKGS 616 (645)
Q Consensus 589 --~~~tvi~vsHd~--------~~i~~~~d~v~~l~~g 616 (645)
.+.|||++||+. ..+..+||+|++|+..
T Consensus 155 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 155 NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 466999999999 5588999999999753
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.64 E-value=2e-16 Score=156.98 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=104.4
Q ss_pred eeeeeeeeE-EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHH
Q 006442 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (645)
Q Consensus 110 ~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~ 188 (645)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+ +..+. +. +.+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~---------~~~~~------~~-~~~~~---- 68 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY---------VTTEE------SR-DSIIR---- 68 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE---------EESSS------CH-HHHHH----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE---------EEccc------CH-HHHHH----
Confidence 456888887 89999999999999999999999999987766665543 33221 11 11110
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHH
Q 006442 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (645)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRv 268 (645)
++. .+.. +...+ ... ....+ +.....++ . .. .....|.++.++.
T Consensus 69 ---------~~~-~~~~---~~~~~---~~~------~~~~~---------~~~~~~~~-~-~~---~~~~~~~~~~~~~ 112 (235)
T 2w0m_A 69 ---------QAK-QFNW---DFEEY---IEK------KLIII---------DALMKEKE-D-QW---SLVNLTPEELVNK 112 (235)
T ss_dssp ---------HHH-HTTC---CCGGG---BTT------TEEEE---------ECCC-----C-TT---BCSSCCHHHHHHH
T ss_pred ---------HHH-Hhcc---hHHHH---hhC------CEEEE---------eccccccC-c-ee---eecCCCHHHHHHH
Confidence 000 0000 00000 000 00000 00000000 0 00 1234599999998
Q ss_pred HHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcCeEEEEcCc
Q 006442 269 SLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEMG 332 (645)
Q Consensus 269 aLAraL~~~p~--iLLLDEPts~L--D~~~~~~l~~~L----~~~g~tvIivsHd~--------~~l~~~~d~i~~l~~G 332 (645)
..+.+...+|+ +|++||||+++ |+.....+.+.| ++.|+|||+++|+. ..+.++||+|++++..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88888888999 99999999888 987776666554 45689999999999 5588999999999764
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.63 E-value=1.6e-18 Score=170.63 Aligned_cols=142 Identities=9% Similarity=-0.008 Sum_probs=103.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhh---ccccHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~---~~~~~~~~ 523 (645)
.++|+++||+|+||||||||+++|+|++.|. ..++.|.....-....++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~------------i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGER------------VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGG------------EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC------------eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 5789999999999999999999999998651 12222221100012456766654322 12234556
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhH----HHHHHHHHHHccCCCeEEeeCCCCC-------CCHHHHHHHHHHHHhc---
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGE----KARLAFCKFMVKPSTLLVLDEPTNH-------LDIPSKEMLEEAISEY--- 589 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPt~~-------LD~~s~~~l~~~l~~~--- 589 (645)
.+.++.+++. +..+.++..+|+|| +||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6777777764 44567888999996 4788999999999999999999999 9999998888887653
Q ss_pred -CceEEEEecCHH
Q 006442 590 -KGTVITVSHDRY 601 (645)
Q Consensus 590 -~~tvi~vsHd~~ 601 (645)
+.|++.++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 569999999853
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.62 E-value=1.6e-18 Score=197.33 Aligned_cols=152 Identities=20% Similarity=0.323 Sum_probs=90.1
Q ss_pred cEEEEeEEEEeCC--eeeeeee----------eEEEECCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEEcCCC---
Q 006442 97 GVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN--- 160 (645)
Q Consensus 97 ~i~i~nls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-~~G~I~~~~~~--- 160 (645)
.+.++|+++.|+. +++++.+ +|+++. ++|||||||||||||++|+|+..| ++|.|.+.|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4789999999965 3355444 366665 999999999999999999999988 79998776532
Q ss_pred ----------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhC
Q 006442 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (645)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (645)
..|+|++|++.+++..||.+|+..+... ..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~-------------------------- 126 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA-------------------------- 126 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH--------------------------
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc--------------------------
Confidence 3589999998887777888887421100 00
Q ss_pred ChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHcc
Q 006442 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEP------ts~LD~~~~~~l~~~L~~ 304 (645)
....++. ++++.++.+....|+++|+||| |++||+..+..+.+++++
T Consensus 127 ------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 127 ------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp ------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred ------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 0001111 1122233333458999999999 999999998877766532
Q ss_pred -----CCCeEEEEecCHHH
Q 006442 305 -----QDVPMVIISHDRAF 318 (645)
Q Consensus 305 -----~g~tvIivsHd~~~ 318 (645)
.+.++++++|+.+.
T Consensus 180 ~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp HTTSSSCCEEEEEESSSCT
T ss_pred HHhcCCCCceEEEeccchh
Confidence 46788999999763
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=1.1e-16 Score=156.71 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=97.3
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCeeEEEECc-------eec--c
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGE-------HNV--L 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~-----~p~~G~i~~~g-------~~~--~ 489 (645)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++...+ ..+ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 488999999997 467877 889999999999999999999999999998 78888764311 111 1
Q ss_pred cchhccchhhcCCCCC-----CHHHHHHh---hh----------cccc--HHHHHHHHhhcCCChhhhccCcCcCCHhHH
Q 006442 490 PNYFEQNQAEALDLDK-----TVLETVAE---AA----------EDWR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (645)
Q Consensus 490 ~~~~~q~~~~~l~~~~-----tv~e~v~~---~~----------~~~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 549 (645)
+++.... ..... .....+.. .. .... ..++..++...++..-....++..+|+|||
T Consensus 80 ~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 80 PGYGYAE----VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp CCCC----------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred cCCcccc----cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 1111000 00000 00001110 00 0011 224556666777653334677889999999
Q ss_pred HH-HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc
Q 006442 550 AR-LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 550 qr-v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~ 589 (645)
|| +..+++++.+|+++++|||||++|..+...+.+.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999988754
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.1e-17 Score=163.85 Aligned_cols=180 Identities=11% Similarity=0.093 Sum_probs=95.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEEcCC---CceEEEEec
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKS---NMKIAFLSQ 168 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~-----~p~~G~I~~~~~---~~~i~~v~Q 168 (645)
+|+++|++|.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+...+. ...+-+ -.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467877 899999999999999999999999999998 788887653210 001111 11
Q ss_pred cCccCC-CC--CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchh
Q 006442 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (645)
Q Consensus 169 ~~~~~~-~~--Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (645)
.|.... .. ...+.+ .. .+..+.+...... ..-++..+ .......+..+.+.+..
T Consensus 79 t~G~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~-~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKW----QR------ALGEYLEKRQSLQ-GLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHH----HH------HHHHHHHHCTTEE-EEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHH----HH------HHHHHHHhhhccc-EEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 121100 00 000100 00 0001110000000 00000000 00001112234444555
Q ss_pred cCCCcccccccCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqR-vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
.+++.-....++..+|+||+|| +..+++++.+|.++++|||||++|...+..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 6665333355578899999999 899999999999999999999999999998887764
No 189
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.61 E-value=6.1e-17 Score=188.57 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=99.6
Q ss_pred cEEEEeEEEEe-----CCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEcCCCceEEEEeccC
Q 006442 97 GVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (645)
Q Consensus 97 ~i~i~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~~~~~~i~~v~Q~~ 170 (645)
.|.+++..--. ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|... ......+++++|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH--
Confidence 47777653222 345699999999 9999999999999999999999999742 2334211 111224555554
Q ss_pred ccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCc
Q 006442 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (645)
Q Consensus 171 ~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (645)
++...++.+++.
T Consensus 653 -i~~~~~~~d~l~------------------------------------------------------------------- 664 (800)
T 1wb9_A 653 -IFTRVGAADDLA------------------------------------------------------------------- 664 (800)
T ss_dssp -EEEEEC-------------------------------------------------------------------------
T ss_pred -HHhhCCHHHHHH-------------------------------------------------------------------
Confidence 223334444321
Q ss_pred ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHcc-CCCeEEEEecCHHHHHhhcCe
Q 006442 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGK-QDVPMVIISHDRAFLDQLCTK 325 (645)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~----l~~~L~~-~g~tvIivsHd~~~l~~~~d~ 325 (645)
....++|+|+++ ++.+...+.+|+++|||||++|+|+..... +.+.+.+ .|.++|++||+.+.. .+||+
T Consensus 665 ----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~ 738 (800)
T 1wb9_A 665 ----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEK 738 (800)
T ss_dssp ---------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred ----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhh
Confidence 112456777764 444455689999999999988888765433 3344444 589999999999765 47776
Q ss_pred EEEEcC
Q 006442 326 IVETEM 331 (645)
Q Consensus 326 i~~l~~ 331 (645)
+..+.+
T Consensus 739 ~~~v~n 744 (800)
T 1wb9_A 739 MEGVAN 744 (800)
T ss_dssp STTEEE
T ss_pred hhceEE
Confidence 533333
No 190
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=4.1e-15 Score=142.01 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=78.9
Q ss_pred hccCcCcCCHhHHHHHHHHHHHc----cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCEE
Q 006442 537 LDRKVSLLSGGEKARLAFCKFMV----KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~v 610 (645)
..+.+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++. .++|+|||+.... .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35667889999999999999997 4579999999999999999999999998763 5899999998655 679999
Q ss_pred EEE--eCCeEEeeCCChhHHHHHH
Q 006442 611 VEV--KGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 611 ~~l--~~g~i~~~~~~~~~~~~~~ 632 (645)
+.+ .+|.......+.+++.+..
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHHHH
Confidence 866 4787666667777765433
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.61 E-value=1.2e-16 Score=169.97 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=97.9
Q ss_pred EeEEEEeC--CeeeeeeeeE-------EEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCce------EE
Q 006442 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (645)
Q Consensus 101 ~nls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~~------i~ 164 (645)
.+++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|........ .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45666662 2346667665 67888999999999999999999999999987 566543211110 01
Q ss_pred EEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch
Q 006442 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (645)
Q Consensus 165 ~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (645)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcC
Q 006442 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (645)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d 324 (645)
.+ ...++-.+ +||+||.++|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 888877766654 4599999999999988 6799
Q ss_pred eEEEEcCc
Q 006442 325 KIVETEMG 332 (645)
Q Consensus 325 ~i~~l~~G 332 (645)
|++.+..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99877443
No 192
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=4.2e-15 Score=141.94 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=76.3
Q ss_pred ccccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~----~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l~~~~d~i 326 (645)
..+.+..||||||||++||++|+ .+|+++||||||++||+.++..+.++|++ .+.++|+|||+...+ ..||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 45667899999999999999997 45799999999999999999999998853 457899999998765 689999
Q ss_pred EEE--cCceeEEeccChHHHH
Q 006442 327 VET--EMGVSRTYEGNYSQYV 345 (645)
Q Consensus 327 ~~l--~~G~~~~~~g~~~~~~ 345 (645)
+.+ ++|....+..++..+.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHH
Confidence 854 5788777767665543
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.9e-17 Score=179.53 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=97.0
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEEcC-C---CceEEEEecc
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAK-S---NMKIAFLSQE 169 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G--~I~~~~-~---~~~i~~v~Q~ 169 (645)
..|.++|++++|+++.++++++|+| +|+|+||||||||+++|+|...+..| .+.+.. . ...++|++|+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 3589999999999888999999998 99999999999999999999875444 221111 1 1247888888
Q ss_pred CccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCC
Q 006442 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (645)
Q Consensus 170 ~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (645)
+.+...+||+|++..... .. .. ..+. .+...+.
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~--~~-------------~~-~~~~----------------------~i~~~i~--------- 116 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDA--VD-------------NS-NCWQ----------------------PVIDYID--------- 116 (418)
T ss_dssp ---CEEEEEEECC---------------------------CH----------------------HHHHHHH---------
T ss_pred CCcccceeeeechhhhhh--cc-------------ch-hhHH----------------------HHHHHHH---------
Confidence 776667788777532100 00 00 0000 0000010
Q ss_pred cccccccCCCCChHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHH
Q 006442 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (645)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~---iLLLDEPt-s~LD~~~~~~l~~~L~~~g~tvIivsHd~~ 317 (645)
..++.+++||++|||+++.+|+ +|++|||| .+||+....++..+ .. +.+||+|.|..+
T Consensus 117 --------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~D 178 (418)
T 2qag_C 117 --------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKAD 178 (418)
T ss_dssp --------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTT
T ss_pred --------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEccc
Confidence 1234466779999999999999 99999999 69999887666554 43 788888888654
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.60 E-value=1.2e-15 Score=157.09 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=91.1
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC----CceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~ 195 (645)
+++|++++|+||||||||||++.|++.+. .|.+.. +. ...+.|+..+.. . +.+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 454422 11 235777765421 1 11100 0
Q ss_pred HHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHc
Q 006442 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (645)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (645)
+.. +.. .+. .....++++.+++. +..++++..||+||+|++ ++++
T Consensus 87 ~~~----~g~-----------------------~~~----~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LGA-----------------------HLS----AEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HHT-----------------------TSC----HHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HHh-----------------------hcC----hhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhc
Confidence 000 000 000 01122334455554 345677899999998765 6888
Q ss_pred cCCCEEEEeCCCC--CCCHHHH---HHHHHH----HccCCCeEEEEecCHHHHH
Q 006442 276 QDPDLLLLDEPTN--HLDLDTI---EWLEGY----LGKQDVPMVIISHDRAFLD 320 (645)
Q Consensus 276 ~~p~iLLLDEPts--~LD~~~~---~~l~~~----L~~~g~tvIivsHd~~~l~ 320 (645)
.+|+++|+||||+ ++|.... ..+... .++.|+|||+++|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 9997433 444333 3456999999999987654
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.59 E-value=1.8e-16 Score=168.59 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=86.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
.+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +...+.. .. ....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~~~~~~~-~~-------------v~q~------ 176 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--FVHESKK-CL-------------VNQR------ 176 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--SCCCCSS-SE-------------EEEE------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--hhhhccc-cc-------------eeee------
Confidence 67889999999999999999999999999887 566654332211 1100000 00 0000
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~ 604 (645)
......++..+ +||+||.++|++|++|||| |.++.+.+.++.. .+.|||+++|+.+.+
T Consensus 177 -------------~~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~- 234 (356)
T 3jvv_A 177 -------------EVHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA- 234 (356)
T ss_dssp -------------EBTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-
T ss_pred -------------eeccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-
Confidence 00001122222 9999999999999999999 7888776666543 377999999999988
Q ss_pred hhCCEEEEEe
Q 006442 605 QIVNRVVEVK 614 (645)
Q Consensus 605 ~~~d~v~~l~ 614 (645)
..+||++.|.
T Consensus 235 ~~~dRli~l~ 244 (356)
T 3jvv_A 235 KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHhhhc
Confidence 6688887764
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.57 E-value=2.4e-16 Score=164.26 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=98.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhcCCCCCCHHHHHH
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. +++.|. ..+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~--~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP--EGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC--TTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC--CCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999998877521 112221 22334456777775
Q ss_pred hhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC--eEEeeCCCCCCCHHHHHHHHHHHHhcC
Q 006442 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST--LLVLDEPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~s~~~l~~~l~~~~ 590 (645)
.+...... ..+++..|.. +.....++..++||++||||++.+|+ +|.|| |+++.+. ...+.++-+..+
T Consensus 179 ~~~~~~~d---~~llDt~G~~----~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~ 248 (304)
T 1rj9_A 179 AMKARGYD---LLFVDTAGRL----HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVG 248 (304)
T ss_dssp HHHHHTCS---EEEECCCCCC----TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHC
T ss_pred HHHhCCCC---EEEecCCCCC----CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcC
Confidence 43211000 0012223331 12222345566999999999999999 66666 5555442 223333333457
Q ss_pred ceEEEEecCHHHHH---------hhCCEEEEEeCCeE
Q 006442 591 GTVITVSHDRYFVK---------QIVNRVVEVKGSNL 618 (645)
Q Consensus 591 ~tvi~vsHd~~~i~---------~~~d~v~~l~~g~i 618 (645)
.|+|+|||+..... .+.-.|.++..|+-
T Consensus 249 ~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 249 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEG 285 (304)
T ss_dssp CSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred CcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCC
Confidence 79999999854321 11246666666653
No 197
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.57 E-value=4.1e-16 Score=165.79 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=88.2
Q ss_pred eeeeee-eEEEECCcEEEEECCCCccHHHHHHHHHcCC--CCCc----cE-EEEcCCCceEEEEeccCccCCCCCHHHHH
Q 006442 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNMKIAFLSQEFEVSMSRTVREEF 182 (645)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~--~p~~----G~-I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni 182 (645)
+.|+.+ ++.|++|++++|+||||||||||++.|+|.. +|++ |. |++++.. .+ . .+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~----------~~----~-~~~i 182 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN----------TF----R-PERI 182 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS----------CC----C-HHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC----------CC----C-HHHH
Confidence 345554 6899999999999999999999999999998 6776 45 4444321 10 0 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCCh
Q 006442 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (645)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSG 262 (645)
... .... .+.. . .+++.+-+ .. ..-|.
T Consensus 183 ~~i-----------------~q~~----------------------~~~~---~----~v~~ni~~----~~---~~~~~ 209 (349)
T 1pzn_A 183 REI-----------------AQNR----------------------GLDP---D----EVLKHIYV----AR---AFNSN 209 (349)
T ss_dssp HHH-----------------HHTT----------------------TCCH---H----HHGGGEEE----EE---CCSHH
T ss_pred HHH-----------------HHHc----------------------CCCH---H----HHhhCEEE----Ee---cCChH
Confidence 100 0000 0000 0 11111111 00 01257
Q ss_pred HHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecCHHHH
Q 006442 263 GWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 263 GqkqRvaLAraL~-------~~p~iLLLDEPts~LD~~~------------~~~l~~~----L~~~g~tvIivsHd~~~l 319 (645)
+|+|++.++++++ .+|++||+||||++||+.. ...+... .++.++|||+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 8888999998888 6899999999999999852 2233332 345799999999998755
Q ss_pred HhhcCeEEEEcCce
Q 006442 320 DQLCTKIVETEMGV 333 (645)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (645)
..+.........|.
T Consensus 290 ~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 290 DAFFGDPTRPIGGH 303 (349)
T ss_dssp ------------CC
T ss_pred ccccCCccccCCcc
Confidence 43333333344443
No 198
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.56 E-value=7.6e-15 Score=151.06 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=92.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----cchhccchhhcCCCCCCHH---HHHHhhhccc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVL---ETVAEAAEDW 518 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~---e~v~~~~~~~ 518 (645)
.|++|++++|+||||||||||++.|++.+. .|.+.+ |.+.. ..|+. .+.+.. ..+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~--------~e~~~~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLP--------AEDPPTAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEE--------SSSCHHHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEE--------CCCCHHHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 344322 22110 11211 112221 1111111122
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC--CCCHHHH---HHHHHHHH----hc
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN--HLDIPSK---EMLEEAIS----EY 589 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~--~LD~~s~---~~l~~~l~----~~ 589 (645)
.......+++.+.+. +..++++..||+||++++ ++++.+|+++|+||||+ ++|.... ..+.+.|. +.
T Consensus 95 ~~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 95 SAEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp CHHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 333455667777764 445778999999998765 67888999999999999 9997544 44444444 34
Q ss_pred CceEEEEecCHHHHH
Q 006442 590 KGTVITVSHDRYFVK 604 (645)
Q Consensus 590 ~~tvi~vsHd~~~i~ 604 (645)
+.|||+|+|+.....
T Consensus 171 g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 171 GCSIVFLHHASKGAA 185 (279)
T ss_dssp CCEEEEEEEC-----
T ss_pred CCEEEEEecCCCccc
Confidence 679999999988764
No 199
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.54 E-value=4.2e-16 Score=177.36 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=98.7
Q ss_pred EEEEEeeeeeeCC--eeceeee----------eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEEECceecc-
Q 006442 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVL- 489 (645)
Q Consensus 424 ~i~~~~v~~~y~~--~~~l~~v----------sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~- 489 (645)
.++++|+++.|++ +++++.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975 3454444 366654 999999999999999999999988 7999999987741
Q ss_pred ------------cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHH
Q 006442 490 ------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (645)
Q Consensus 490 ------------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAra 557 (645)
.+|.+|+ ..+.+..++.+++..... .+...+ . .+| ++++.++.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~--~~l~~~~tv~e~i~~~~~---------~~~~~~-------~---~~s---~~~i~l~i~ 142 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYE--IEISDASEVEKEINKAQN---------AIAGEG-------M---GIS---HELITLEIS 142 (608)
T ss_dssp EECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHH---------HHHCSS-------S---CCC---SCCEEEEEE
T ss_pred ecCCccccceeEEeeeccc--ccCCCHHHHHHHHHHHHH---------HhcCCc-------c---ccc---hHHHHHHhc
Confidence 1233332 334455667776654321 111000 0 011 122333444
Q ss_pred HccCCCeEEeeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----CCEEEEEe
Q 006442 558 MVKPSTLLVLDEP------TNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFV--------KQI----VNRVVEVK 614 (645)
Q Consensus 558 l~~~p~lLlLDEP------t~~LD~~s~~~l~~~l~~~-----~~tvi~vsHd~~~i--------~~~----~d~v~~l~ 614 (645)
....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ ...|+++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 4568999999999 9999999999999999875 24889999997633 222 25677887
Q ss_pred CCeEE
Q 006442 615 GSNLQ 619 (645)
Q Consensus 615 ~g~i~ 619 (645)
++.++
T Consensus 223 K~Dlv 227 (608)
T 3szr_A 223 KPDLV 227 (608)
T ss_dssp CGGGS
T ss_pred chhhc
Confidence 75544
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=3.1e-14 Score=140.18 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=93.0
Q ss_pred ceeeeeE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-cccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 439 LFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 439 ~l~~vsl-~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
.|+.+.. .|++|++++|+||||||||||++.|++ ++..+.++++... +....+ .+ +....
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~--------------~~-~~~~~- 69 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERL--------------VQ-MAETR- 69 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHH--------------HH-HHHTT-
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHH--------------HH-HHHhc-
Confidence 3444443 588999999999999999999999999 3333444443221 000000 00 00000
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhH--HHHHHHHHHHccC-CCeEEeeCCCCCCCHHHH--------HHH---
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE--KARLAFCKFMVKP-STLLVLDEPTNHLDIPSK--------EML--- 582 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPt~~LD~~s~--------~~l--- 582 (645)
.+..+ ++++. ..+..+|+++ +++++.+++++.+ |+++|+||||+.+|.... ..+
T Consensus 70 ~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 70 GLNPE---EALSR---------FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp TCCHH---HHHHH---------EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred CCChH---HHhhc---------EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 01111 11221 1233455664 5678888899986 999999999999997432 222
Q ss_pred -HHHHHhcCceEEEEecCHH-------------HHHhhCCEEEEEeCC
Q 006442 583 -EEAISEYKGTVITVSHDRY-------------FVKQIVNRVVEVKGS 616 (645)
Q Consensus 583 -~~~l~~~~~tvi~vsHd~~-------------~i~~~~d~v~~l~~g 616 (645)
.++.++.+.|||+++|... .+..+||++++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2233345779999999865 677899999999753
No 201
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.52 E-value=1.3e-15 Score=177.50 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=96.0
Q ss_pred EEEEEeeeeee-----CCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEEECceecccchhccch
Q 006442 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQ 497 (645)
Q Consensus 424 ~i~~~~v~~~y-----~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~q~~ 497 (645)
.|.+++...-. +++.++++++|+ ++|++++|+||||||||||||+|+|+..+ ..|.. +.......+++.+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--
Confidence 46676643221 346789999999 99999999999999999999999997422 11210 0000000011111
Q ss_pred hhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHH
Q 006442 498 AEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577 (645)
Q Consensus 498 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~ 577 (645)
+....++.++ .....+.+|+|+++ ++.+...+.+|+++||||||+|+|+.
T Consensus 653 ---i~~~~~~~d~--------------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 653 ---IFTRVGAADD--------------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred ---HHhhCCHHHH--------------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 1111111111 12233457777765 44444568999999999998888876
Q ss_pred HHHHH-HHH---HHh-cCceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 578 SKEML-EEA---ISE-YKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 578 s~~~l-~~~---l~~-~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
....+ ..+ +.+ .+.++|++|||.+++. +||++..+.++++
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence 55443 333 334 3679999999998764 7877655555544
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=3e-15 Score=159.16 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred eeee-eEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCe----eE-EEECceecc-c---chhccchhhcCCCCCCH
Q 006442 440 FNRA-NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNVL-P---NYFEQNQAEALDLDKTV 507 (645)
Q Consensus 440 l~~v-sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~--~p~~----G~-i~~~g~~~~-~---~~~~q~~~~~l~~~~tv 507 (645)
|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++.+.. + .++.|. ..++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~--~~~~----- 192 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN--RGLD----- 192 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHT--TTCC-----
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHH--cCCC-----
Confidence 4443 5789999999999999999999999999998 6766 57 788775431 1 111111 0110
Q ss_pred HHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc-------cCCCeEEeeCCCCCCCHHH--
Q 006442 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIPS-- 578 (645)
Q Consensus 508 ~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPt~~LD~~s-- 578 (645)
.. .+++.+.+. .. .-|.+|+|++.++++++ .+|++||+||||+++|+..
T Consensus 193 ------------~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~ 250 (349)
T 1pzn_A 193 ------------PD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 250 (349)
T ss_dssp ------------HH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS
T ss_pred ------------HH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc
Confidence 00 122211110 01 12578888898888888 6899999999999999862
Q ss_pred ----------HHHHHHHH----HhcCceEEEEecCHHHHHhhCCEEEEEeCCeE
Q 006442 579 ----------KEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 579 ----------~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~i 618 (645)
...+...| ++++.|||+++|+...+...++.......|++
T Consensus 251 ~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 251 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 12333333 34567999999998765433333334444443
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.52 E-value=4.3e-14 Score=139.23 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHHH--------HH----HHHHHccCCCeEEEEecCHH-----
Q 006442 258 ASFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDTI--------EW----LEGYLGKQDVPMVIISHDRA----- 317 (645)
Q Consensus 258 ~~LSGGq--kqRvaLAraL~~~-p~iLLLDEPts~LD~~~~--------~~----l~~~L~~~g~tvIivsHd~~----- 317 (645)
..+|+++ +++++.+++++.+ |+++|+||||+.+|+... .. |.++.++.++|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3445554 5688888999986 999999999999997431 22 23333456899999999876
Q ss_pred --------HHHhhcCeEEEEcCc
Q 006442 318 --------FLDQLCTKIVETEMG 332 (645)
Q Consensus 318 --------~l~~~~d~i~~l~~G 332 (645)
.+..+||++++++..
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999643
No 204
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.52 E-value=1.4e-14 Score=161.99 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=70.9
Q ss_pred ccCcCcC-CHhHHHHHHHHHHHccCC--CeEEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhCCEEEE
Q 006442 538 DRKVSLL-SGGEKARLAFCKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (645)
Q Consensus 538 ~~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~d~v~~ 612 (645)
.+++..| ||||||||+||+||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++++. +|||+++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 4677888 999999999999999999 999999999999999999999999865 569999999999886 5999999
Q ss_pred EeCC
Q 006442 613 VKGS 616 (645)
Q Consensus 613 l~~g 616 (645)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=6.1e-16 Score=167.66 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=91.8
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECcee-c---ccchhccc
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN-V---LPNYFEQN 496 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~-~---~~~~~~q~ 496 (645)
.+|+++|++++|+++.++++++|+| +|+|+||||||||+++|+|...+..| .+.++... + ..++..|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4699999999999889999999998 99999999999999999999875444 11111100 0 01222221
Q ss_pred hhhcCCCCCCHHHHHHhhhccccH---HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCC---eEEeeCC
Q 006442 497 QAEALDLDKTVLETVAEAAEDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST---LLVLDEP 570 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEP 570 (645)
..+...++++|++.+....... ..+.+.++ . .++.+++||++|||+++.+|+ +|++|||
T Consensus 84 --~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~----------~---~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 84 --GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID----------S---KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHH----------H---HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred --CCcccceeeeechhhhhhccchhhHHHHHHHHH----------H---HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 1222334555554433211000 11111121 1 356677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 006442 571 T-NHLDIPSKEMLEEAISEYKGTVITVSHDRYF 602 (645)
Q Consensus 571 t-~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~ 602 (645)
| ++||+.....+.. |.. +.+||+|.|..+.
T Consensus 149 t~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 9 6999887654443 433 5678888887654
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=1.5e-15 Score=150.85 Aligned_cols=127 Identities=11% Similarity=0.131 Sum_probs=83.1
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHH
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~ 189 (645)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|++|++..+..+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~--------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRD--------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT---------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcC---------
Confidence 45789999999999999999999999999986 68888775432 23677777643211110000
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHH
Q 006442 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (645)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRva 269 (645)
++++.+.+ . ..+.|-.+++
T Consensus 82 ---------------------------------------------------~f~E~~~~---~-----~~~yg~~~~~-- 100 (219)
T 1s96_A 82 ---------------------------------------------------AFLEHAEV---F-----GNYYGTSREA-- 100 (219)
T ss_dssp ---------------------------------------------------CEEEEEEE---T-----TEEEEEEHHH--
T ss_pred ---------------------------------------------------HHHHHHHH---H-----hccCCCCHHH--
Confidence 00000000 0 0011111222
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 006442 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 270 LAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~ 321 (645)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+
T Consensus 101 -v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 -IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp -HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred -HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 34455668999999 99999999999887 58899999999999876
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=5.2e-15 Score=158.61 Aligned_cols=123 Identities=22% Similarity=0.278 Sum_probs=91.0
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEEcCCCc------eEEEEeccCccCCCCCHHHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~-~G~I~~~~~~~------~i~~v~Q~~~~~~~~Tv~eni~~ 184 (645)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|...+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566665 7899999999999999999999999999997 89986543221 11222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHH
Q 006442 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (645)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGq 264 (645)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 11221 2344
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEE
Q 006442 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (645)
Q Consensus 265 kqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l 329 (645)
+.+|+++|..+|++|++|||+ |+++...+.+.. ..|.+|+.++|+.+ +..+++|++.+
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 888766555544 45889999999966 66778887655
No 208
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=2.9e-17 Score=175.84 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=97.3
Q ss_pred eeeeeeEEEEC--CcEEEEECCCCccHHHHHHHHHcCCCCCc----cEEEEcCCCceEEEEeccCccCCCCCHHHHHHHh
Q 006442 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (645)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~----G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~ 185 (645)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+.+... ..+. ....... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTT-SSCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCcc-cCChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 7766531100 0010 0111122 333221
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHH
Q 006442 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (645)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqk 265 (645)
+... . . . ...+.+-+..++ ....+..+..+|+|++
T Consensus 230 ~q~~-------~--~--~--------------------------------~~t~~~nl~~~~--~~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRY-------I--D--Y--------------------------------AVRHSHKIAFID--TDFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHH-------H--H--H--------------------------------HHHHCSSEEEES--SCHHHHHHHHHHHHSC
T ss_pred HHHH-------H--H--H--------------------------------HHhccCCEEEEe--CCchHHHHHHHHHcCC
Confidence 1000 0 0 0 000000011111 1112223445677888
Q ss_pred HHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEEE
Q 006442 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVE 328 (645)
Q Consensus 266 qRvaLAraL~-~~p~iLLLDE---Pt------s~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i~~ 328 (645)
|+..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.+||+++|. ....++++++..
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~ 340 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAV 340 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHH
Confidence 8888888875 6999999999 65 589999888887776 3458899999986 344445554433
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=6.9e-16 Score=149.10 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=81.2
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCc--------eEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~--------~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++... .++|++|.+. +..++.+|+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 5789999999999999999999999998 7889998875421 1344444322 22344444421000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccc--cccCCCCChHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQMRM 268 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~--~~~~~~LSGGqkqRv 268 (645)
.+ ..... .. .++.++..+++. ... +.++..+|+|++||+
T Consensus 78 -------~~---~~~~~------------------------~~----~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 -------RY---AKEGY------------------------FV----ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAE 118 (191)
T ss_dssp -------HH---HHTSC------------------------EE----EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHH
T ss_pred -------HH---hccCC------------------------eE----EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHH
Confidence 00 00000 00 000011111111 111 334578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc
Q 006442 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 269 aLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~ 304 (645)
++||++..+|+++ +|+...+.+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688888888877754
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.45 E-value=2.3e-15 Score=145.35 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=93.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------cchhccchhhcCCCCCCHHHHHHhhhcc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAED 517 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------~~~~~q~~~~~l~~~~tv~e~v~~~~~~ 517 (645)
.+++|++++|+|+||||||||+++|+|. |..|.|.+++.++. .+|+.|... ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 77899999886531 123333211 134566666442210
Q ss_pred ccH----HHHHHHHhhcCCChhhh--ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC-
Q 006442 518 WRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590 (645)
Q Consensus 518 ~~~----~~~~~~L~~~~l~~~~~--~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~- 590 (645)
... ..+...+..+++ .... +.++..+|+|++|+++++|++.++|+++ +|+...+.+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWL-PAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCEEEECSCCCTTTT-HHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCeEEEeccCcHHHH-HHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000 000011111222 1121 3456789999999999999999999886 68888888888776542
Q ss_pred -ceEEEEecCHHHHHhhCCEE
Q 006442 591 -GTVITVSHDRYFVKQIVNRV 610 (645)
Q Consensus 591 -~tvi~vsHd~~~i~~~~d~v 610 (645)
..+++.|++. .+.+++++|
T Consensus 150 ~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 150 FEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp GGGGEEECTTC-CTTTTTTTT
T ss_pred ccccEEECCCC-CHHHHHHHH
Confidence 2344555432 233344443
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=5.8e-15 Score=157.66 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=103.8
Q ss_pred EEEeEEEE---eCC--eeee---------eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----
Q 006442 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (645)
Q Consensus 99 ~i~nls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~---- 160 (645)
++++++|+ |+. .++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 66778887 753 2355 99999999999999999999999999999999999999999987532
Q ss_pred ----ceEEEEe-ccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcH
Q 006442 161 ----MKIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (645)
Q Consensus 161 ----~~i~~v~-Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (645)
..++|++ |++.
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 1234443 2211
Q ss_pred HHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 006442 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (645)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd 315 (645)
..++++..+|..|+.++..+|+.+++|||.. .+..+.+ +.+..-..|++.++|.
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHH-HHHhcCCCeEEEEECC
Confidence 0113444578888889999999999999985 3333333 3333334578999999
Q ss_pred HHHHHhhcCeEEEEcCce
Q 006442 316 RAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~ 333 (645)
.. ....++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 65 777899998887653
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-14 Score=157.15 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=104.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCCCCccEEEEc---C-CCceEEEEeccCc
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~---~-~~~~i~~v~Q~~~ 171 (645)
+++++ +++|++.+ |+++||+|++|++ ++|+|+||||||||+++|+|..- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 67777 89998888 9999999999999 99999999999999999999841 2221110 0 1125999999987
Q ss_pred cCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhc-CCCc
Q 006442 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (645)
Q Consensus 172 ~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l-gl~~ 250 (645)
+++.+||.||+..+... .... .+..+.. .+...+.++|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~--~~~~--------------~~~~i~~------------------~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQI--NKED--------------SYKPIVE------------------FIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-C--CHHH--------------HSHHHHH------------------HHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhcc--ccch--------------hhhHHHH------------------HHHHHHHHHHHHHHhhhh
Confidence 76677888876422110 0000 0000000 0111122222221 2110
Q ss_pred ---cccccc-----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HccCCCeEEEE
Q 006442 251 ---DDGDRL-----------VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (645)
Q Consensus 251 ---~~~~~~-----------~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~----L~~~g~tvIiv 312 (645)
...+.. ...|+-.. +.++++|..+++|+++|+|+..|.+.....+... |+..|.+|+.+
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 001111 12455555 7999999999999999999999998877666543 55679999999
Q ss_pred ecCH
Q 006442 313 SHDR 316 (645)
Q Consensus 313 sHd~ 316 (645)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9764
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.43 E-value=1.5e-14 Score=155.12 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=86.4
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-eeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
.+|++++ +++|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++. +..... ..+ ..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~~~~~~-~~~-------------v~ 187 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--YVFKHK-KSI-------------VN 187 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--SCCCCS-SSE-------------EE
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--hhhccC-ceE-------------EE
Confidence 3566665 8999999999999999999999999999998 899976554321 110000 000 00
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEE
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITV 596 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~v 596 (645)
+. .+|+ .+..| +.+|+++|..+|+++++|||| |.++...+.+.. ..+.+|+++
T Consensus 188 Q~----------~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t 240 (372)
T 2ewv_A 188 QR----------EVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGT 240 (372)
T ss_dssp EE----------EBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEEC
T ss_pred ee----------ecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEE
Confidence 00 1222 12334 469999999999999999999 777655444433 335699999
Q ss_pred ecCHHHHHhhCCEE
Q 006442 597 SHDRYFVKQIVNRV 610 (645)
Q Consensus 597 sHd~~~i~~~~d~v 610 (645)
+|+.+ +...+||+
T Consensus 241 ~H~~~-~~~~~~rl 253 (372)
T 2ewv_A 241 LHTNT-AIDTIHRI 253 (372)
T ss_dssp CCCCS-HHHHHHHH
T ss_pred ECcch-HHHHHHHH
Confidence 99865 55555554
No 214
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=1.1e-15 Score=144.11 Aligned_cols=82 Identities=22% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCce-----EEEEeccCccCC
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVSM 174 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~-----i~~v~Q~~~~~~ 174 (645)
.+++++.|++..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+++.... -.|++|++.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~- 87 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY- 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-
Confidence 346677887777999999999999999999999999999999999999 99999988765431 12689998877
Q ss_pred CCCHHHHHH
Q 006442 175 SRTVREEFM 183 (645)
Q Consensus 175 ~~Tv~eni~ 183 (645)
.+|+.||+.
T Consensus 88 ~ltv~e~l~ 96 (158)
T 1htw_A 88 RLADPEELE 96 (158)
T ss_dssp TCSCTTHHH
T ss_pred cCCcHHHHH
Confidence 889999874
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=1.9e-15 Score=161.75 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=101.3
Q ss_pred ceeeeeEEEec--CcEEEEEcCCCCcHHHHHHHHHcCCCCCe----eEEEECceecccchhccchhhcCCCCCCHHHHHH
Q 006442 439 LFNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 439 ~l~~vsl~i~~--Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
+...|+++|.+ |++++|+|+||||||||+++|+|+++|++ |++.+++.. ... ...+ ..... +++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~------~~~-~~~~-~~~~~-~~I~ 227 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL------GGD-EQAM-QYSDY-PQMA 227 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS------SSC-TTSS-CTTTH-HHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc------CCC-cccC-ChhHH-HHHH
Confidence 35679999999 99999999999999999999999999998 665442110 000 0001 11122 3343
Q ss_pred hhhccccHHHHHHHHhhcCC-ChhhhccCcCcCCHhHHHHHHHHHHHc-cCCCeEEeeC---CC------CCCCHHHHHH
Q 006442 513 EAAEDWRIDDIKGLLGRCNF-KADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE---PT------NHLDIPSKEM 581 (645)
Q Consensus 513 ~~~~~~~~~~~~~~L~~~~l-~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---Pt------~~LD~~s~~~ 581 (645)
........ ......+.+-+ ..+..+..+..+|+|++++..+++++. .+|++++||| |+ .++|...+..
T Consensus 228 ~~~q~~~~-~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~ 306 (365)
T 1lw7_A 228 LGHQRYID-YAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ 306 (365)
T ss_dssp HHHHHHHH-HHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred HHHHHHHH-HHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence 32211100 00111111100 012223344567778888888888875 6999999999 65 5899999999
Q ss_pred HHHHHHh----cCceEEEEecCHHHHHhhCCEEEEEe
Q 006442 582 LEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614 (645)
Q Consensus 582 l~~~l~~----~~~tvi~vsHd~~~i~~~~d~v~~l~ 614 (645)
+.++|.+ .+.+||+++|. ....++++++..++
T Consensus 307 l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 307 FQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9988843 35699999986 45666777666554
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=2.2e-12 Score=128.84 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=79.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CeeEEEECceecc-cchhccchhhcCCCCCCHHHHHHhhhcc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEHNVL-PNYFEQNQAEALDLDKTVLETVAEAAED 517 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p-----~~G~i~~~g~~~~-~~~~~q~~~~~l~~~~tv~e~v~~~~~~ 517 (645)
-|++|++++|+||||||||||++.|++ ..+| ..|.+++++.+.. +..+.+.. ..+ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~-~~~---------------g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA-ERY---------------G 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH-HHT---------------T
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHH-HHc---------------C
Confidence 488999999999999999999999999 5655 5677777654311 00000000 000 0
Q ss_pred ccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHH-HHHHHHHc--cCCCeEEeeCCCCCCCHH-------H-----HHHH
Q 006442 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR-LAFCKFMV--KPSTLLVLDEPTNHLDIP-------S-----KEML 582 (645)
Q Consensus 518 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr-v~lAral~--~~p~lLlLDEPt~~LD~~-------s-----~~~l 582 (645)
+..+ ++++.+.+ ...++..+... +.-+..++ .+|+++++|||++.+|.. + ...+
T Consensus 84 ~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 84 LSGS---DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp CCHH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred CCHH---HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 0111 11121111 11245554433 22233333 589999999999999975 3 1222
Q ss_pred HHHH----HhcCceEEEEecCHHHHHh-------------------hCCEEEEEeCC
Q 006442 583 EEAI----SEYKGTVITVSHDRYFVKQ-------------------IVNRVVEVKGS 616 (645)
Q Consensus 583 ~~~l----~~~~~tvi~vsHd~~~i~~-------------------~~d~v~~l~~g 616 (645)
...| ++.+.|||+++|....... +||++++|+.+
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2222 2446799999997665443 79999999854
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=6.5e-13 Score=142.39 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=67.7
Q ss_pred cCcCcCCHhHHHHH------HHHHHHccC-CCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhCCE
Q 006442 539 RKVSLLSGGEKARL------AFCKFMVKP-STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 539 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~d~ 609 (645)
.++..||||||||+ ++|++++.+ |++|||||||++||+..+..+.+.|.+.. .+||+||||.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56778999999988 567899999 99999999999999999999999998763 49999999987 5788999
Q ss_pred EEEEe
Q 006442 610 VVEVK 614 (645)
Q Consensus 610 v~~l~ 614 (645)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.38 E-value=1.1e-13 Score=146.51 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=83.4
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEc-C------CCceEEEEeccCccCCCCCHHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-K------SNMKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-p~~G~I~~~-~------~~~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
-++++++. .+|++++|+||||||||||+++|+|..+ |.+|+|... | ....+++++|++.++...+++++.+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 35556654 4799999999999999999999999999 999999875 3 2346899999987766667766311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChH
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (645)
.. ++..++...+.++++.+|+. ...++.+.+|| |
T Consensus 284 ~~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 WH--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp CC--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred cC--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 00 11112334456778888886 57888999999 9
Q ss_pred HHHHHHHHHHH
Q 006442 264 WQMRMSLGKIL 274 (645)
Q Consensus 264 qkqRvaLAraL 274 (645)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.37 E-value=2.6e-14 Score=144.20 Aligned_cols=132 Identities=20% Similarity=0.298 Sum_probs=91.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHH---cCCCCCeeEEEECceecc--cc----hhccchhhcCCCCCCHHHHHHhhhc---
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNVL--PN----YFEQNQAEALDLDKTVLETVAEAAE--- 516 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~~~g~~~~--~~----~~~q~~~~~l~~~~tv~e~v~~~~~--- 516 (645)
++++++|+|+||||||||+++|+ |+..|+.|.|.+++.+.. .+ ++.|+ ..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEK--SLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999998877653211 11 11221 234455677777764210
Q ss_pred -------c--ccHHHHHHHHh--hcC------------CChhhhccCcCcCCHhHHHHHHHHHHH-ccCCCeEEee----
Q 006442 517 -------D--WRIDDIKGLLG--RCN------------FKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD---- 568 (645)
Q Consensus 517 -------~--~~~~~~~~~L~--~~~------------l~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD---- 568 (645)
. ....++..+.. .++ + ....++.+..||| |+ +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 11222333322 222 1 2344677889999 65 777 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 006442 569 EPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 569 EPt~~LD~~s~~~l~~~l~~~~ 590 (645)
|||++||..+.+.+.+.+.++.
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999888763
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.37 E-value=4.4e-16 Score=150.53 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=96.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHH
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~ 198 (645)
|++++|+||||||||||+++|++ +.+|.+.+++.. ..+++++|.....+..++++++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------- 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH-----------
Confidence 67999999999999999999997 668888876432 123455554322122244444321000
Q ss_pred HHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCC--ChHHHHHHHHHH----
Q 006442 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (645)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L--SGGqkqRvaLAr---- 272 (645)
...... ...+++.+.. ....+....+ |+|++|++.++.
T Consensus 68 --~~~~~~--------------------------------~~~ild~~~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 68 --NFLLAQ--------------------------------NDVVLDYIAF--PDEAEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp --HHHHTT--------------------------------CEEEEESCCC--HHHHHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred --HHHhcC--------------------------------CcEEEeeccC--HHHHHHHHHHHHhcccCCCeEEEEEeCC
Confidence 000000 0001111110 0000112234 888888888888
Q ss_pred --HHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcCeEEEEcCceeEEeccC
Q 006442 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGN 340 (645)
Q Consensus 273 --aL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIivsHd-~~~l~~~~d~i~~l~~G~~~~~~g~ 340 (645)
+++.+|....+|+ +||+..+.. .+.+ .+.+.++|.+||. ++.+.++|++|+ ++|++ .+.|+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~ 178 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMA 178 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC--
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeec
Confidence 8999999888884 899987766 5444 3457899999999 999999999998 88876 34454
No 221
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.36 E-value=2.5e-16 Score=152.26 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc----cchhccchhhcCCCCCCHHHHHHhhhccccHHHHHH
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~ 525 (645)
|++++|+||||||||||+++|++ +.+|.+.+++.++. .+++.+.. ......++++++..............
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 78999999999999999999997 66788998875542 12222211 01112345555443211000000000
Q ss_pred HHhhcCCChhhhccCcCcC--CHhHHHHHHHHH------HHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEE
Q 006442 526 LLGRCNFKADMLDRKVSLL--SGGEKARLAFCK------FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVI 594 (645)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi 594 (645)
+++.+. ... ..+.+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+..+ +.+||
T Consensus 77 ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred EEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 111111 111 11222335 889988888887 8888888888884 899988877 6666654 35899
Q ss_pred EEecC-HHHHHhhCCEEEEEeCCeEEeeCCChhH
Q 006442 595 TVSHD-RYFVKQIVNRVVEVKGSNLQDYAGDYNQ 627 (645)
Q Consensus 595 ~vsHd-~~~i~~~~d~v~~l~~g~i~~~~~~~~~ 627 (645)
.+||. ++.+.++||+|+ ++|+++. .|+.+.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~~-~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFIF-CMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGSC-C-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEEE-eecCCc
Confidence 99999 999999999999 9999874 455443
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.35 E-value=5e-14 Score=154.08 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=97.5
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCC
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (645)
-+++||++++|++++|+|+||||||||+++|+|++++++|+|.+.+.+ ..|+|++|.+...+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999985321 1489999987666666
Q ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccccccc
Q 006442 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (645)
Q Consensus 177 Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (645)
++++|+..+.. .. .+. -+++-.|..... ...
T Consensus 363 tV~e~l~~a~~----------------~~----~Dv----------------------------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------RN----IDV----------------------------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH----------------TT----CSE----------------------------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh----------------cC----CCE----------------------------EEEeCCCccchh-hhH
Confidence 78887642210 00 000 012222322110 111
Q ss_pred CCCCChHHHHHHHHHHHHc-cCCC-EEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 006442 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (645)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~-~~p~-iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsH 314 (645)
+.+| +|++.+++++. ..|+ +||..+|+.|.|.. ..+..+-+..+.|.|++||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1223 47888888774 4564 56666689886654 2333333346899999999
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.34 E-value=4.6e-12 Score=126.57 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc--CCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p 149 (645)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 489999999999999999999999999 5655
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=1e-13 Score=145.79 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=100.7
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC----------------ceEEEEeccCccCCCCCHHHHHH
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.++|++++|+||||||||||+++|+|.++|++|+|.+.+.+ ..+.|++|.+...+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999886532 23668999887777778888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChH
Q 006442 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (645)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGG 263 (645)
.+... . .+. -+++..|.. +.....+.+||
T Consensus 206 ~~~~~----------------~----~d~----------------------------vliDtaG~~-~~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKAR----------------G----IDV----------------------------VLIDTAGRS-ETNRNLMDEMK-- 234 (328)
T ss_dssp HHHHH----------------T----CSE----------------------------EEEEECCSC-CTTTCHHHHHH--
T ss_pred HHHhc----------------c----chh----------------------------hHHhhccch-hHHHHHHHHHH--
Confidence 22100 0 000 012233332 11122233333
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHH---------HHHhhcCeEEEEcCce
Q 006442 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---------FLDQLCTKIVETEMGV 333 (645)
Q Consensus 264 qkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~---------~l~~~~d~i~~l~~G~ 333 (645)
.++|++..++.+++||.++. .| ..+.+..+-+..+.|+|++||.-+ .+....-.|.++..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 48999999999999995554 33 333344443456899999999532 2233344566666664
No 225
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.34 E-value=5.5e-15 Score=149.22 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=85.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEEEcCCC------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHH
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~---G~~~p~~G~I~~~~~~------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~ 192 (645)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+.. ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47899999999999999999999 9999999988765321 1133344554444444555555321100
Q ss_pred HHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhc--hhcCC-----------CcccccccCCC
Q 006442 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (645)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll--~~lgl-----------~~~~~~~~~~~ 259 (645)
..... . .+ ...+. .. ..+..+. ..+++ .....++.+..
T Consensus 102 ----------~~~~~--~-il--------------~g~~~-~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ----------RRGQH--W-LL--------------DGFPR-TL-GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ----------CTTSC--E-EE--------------ESCCC-SH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ----------cCCCe--E-EE--------------ECCCC-CH-HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000 0 00 00000 00 0011110 11110 01234567889
Q ss_pred CChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHcc
Q 006442 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (645)
Q Consensus 260 LSGGqkqRvaLAraL-~~~p~iLLLD----EPts~LD~~~~~~l~~~L~~ 304 (645)
||| |+ +|+ +.+|++++|| |||++||+.+.+.+.+.+++
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 66 777 9999999999 99999999998888776643
No 226
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.34 E-value=4.9e-14 Score=150.51 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=102.1
Q ss_pred EEEeeeee---eCC--eece---------eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccc
Q 006442 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (645)
Q Consensus 426 ~~~~v~~~---y~~--~~~l---------~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 491 (645)
++++++|+ |++ ..+| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--- 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--- 213 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---
Confidence 67888888 853 3455 999999999999999999999999999999999999999999986421
Q ss_pred hhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCC
Q 006442 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (645)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 571 (645)
+......... ...... .....++++..++-.|+.++..+|+.+++|||+
T Consensus 214 ~~~~~~~~~v-------------~~v~~q------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 214 LFLPDHPNHV-------------HLFYPS------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp CCCTTCSSEE-------------EEECC----------------------------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred cCccccCCEE-------------EEeecC------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 1000000000 000000 000012455568889999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCEEEEEeCCe
Q 006442 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 572 ~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~v~~l~~g~ 617 (645)
. .+... +.+.+..-..|++.++|+.+ +...++|+..+..+.
T Consensus 263 ~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 263 G---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp S---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred H---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 6 22222 22223222247899999965 667788888887654
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=2e-13 Score=135.51 Aligned_cols=128 Identities=13% Similarity=0.254 Sum_probs=78.8
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceeccc------chhccchhhcCCCCCCHHHHHHhhh
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLP------NYFEQNQAEALDLDKTVLETVAEAA 515 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~------~~~~q~~~~~l~~~~tv~e~v~~~~ 515 (645)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... +|++|... ..+......
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--------~f~~~~~~~ 81 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--------EFKEMISRD 81 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--------HHHHHHHTT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--------HHHHHHhcC
Confidence 345789999999999999999999999999986 68888776654322 12222110 011100000
Q ss_pred ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEE
Q 006442 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595 (645)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~ 595 (645)
. +++...+ ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.||++
T Consensus 82 ~---------f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 82 A---------FLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp C---------EEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred H---------HHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 0 0000000 00111111222 34556678999999 99999999999887 3569999
Q ss_pred EecCHHHHHh
Q 006442 596 VSHDRYFVKQ 605 (645)
Q Consensus 596 vsHd~~~i~~ 605 (645)
+|||++.+.+
T Consensus 136 ~th~~~~l~~ 145 (219)
T 1s96_A 136 LPPSKIELDR 145 (219)
T ss_dssp ECSSHHHHHH
T ss_pred ECCCHHHHHH
Confidence 9999998876
No 228
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=3.6e-13 Score=145.82 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=90.5
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC-----------CCccEEEEcCCCceEEEEeccCccCCCCCHHHH
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~-----------p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~en 181 (645)
-++++|+++.|+.++|||+||||||||+++|+|..+ |..|.|.+++ ... -.+.+.|.+... ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~-~~l~DtpGli~~--a~~~ 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EER-FTLADIPGIIEG--ASEG 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCE-EEEEECCCCCCC--GGGS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cce-EEEEeccccccc--hhhh
Confidence 478999999999999999999999999999999843 3333333321 011 122233322111 0000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCC
Q 006442 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (645)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LS 261 (645)
. .+... + + . ..++++.++..+++. +.++.+||
T Consensus 223 ~--~L~~~----------------------f----l-------~---------~~era~~lL~vvDls----~~~~~~ls 254 (416)
T 1udx_A 223 K--GLGLE----------------------F----L-------R---------HIARTRVLLYVLDAA----DEPLKTLE 254 (416)
T ss_dssp C--CSCHH----------------------H----H-------H---------HHTSSSEEEEEEETT----SCHHHHHH
T ss_pred h--hhhHH----------------------H----H-------H---------HHHHHHhhhEEeCCc----cCCHHHHH
Confidence 0 00000 0 0 0 001122345555543 45678899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HHHHHccCCCeEEEEec
Q 006442 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW---LEGYLGKQDVPMVIISH 314 (645)
Q Consensus 262 GGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~---l~~~L~~~g~tvIivsH 314 (645)
+||+|++++|++|+..|.+|+| |.+|...... +.+.+++.+.++|++|.
T Consensus 255 ~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 255 TLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9999999999999999999999 9999865433 33444556777777664
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.30 E-value=2.3e-14 Score=134.95 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=66.9
Q ss_pred EEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-----chhccchhhcC
Q 006442 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (645)
Q Consensus 427 ~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-----~~~~q~~~~~l 501 (645)
..++++.|+++.+++++||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.++.. .+..|+ ..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~--~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYH--FDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEE--EEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceec--ccc
Confidence 356778888778999999999999999999999999999999999999 999999998866531 133443 234
Q ss_pred CCCCCHHHHHHh
Q 006442 502 DLDKTVLETVAE 513 (645)
Q Consensus 502 ~~~~tv~e~v~~ 513 (645)
. .+|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 6788777743
No 230
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=3.7e-15 Score=157.67 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC--------------Cce
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------------NMK 162 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~--------------~~~ 162 (645)
.|++++++++|+...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+. ..+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 367788899997778999999999999999999999999999999999999999999987542 124
Q ss_pred EEEEeccCccCC
Q 006442 163 IAFLSQEFEVSM 174 (645)
Q Consensus 163 i~~v~Q~~~~~~ 174 (645)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999886654
No 231
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.29 E-value=1.1e-14 Score=157.79 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=96.0
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-------------
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------------- 490 (645)
.++++++.+.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|.+|+|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 45677777777666788888 5 48999999999999999999999999999999999887654310
Q ss_pred -ch---------hccchhhcCCCC----CCHHHHHHhhhc---------cccHHHHHHHHhhcCCChhhhccCcCcCCHh
Q 006442 491 -NY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (645)
Q Consensus 491 -~~---------~~q~~~~~l~~~----~tv~e~v~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 547 (645)
++ ++|+++..+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 11 123222111111 467777765421 1112334456777888532 366789999
Q ss_pred HHHHHHHHHHHccCCCeEE
Q 006442 548 EKARLAFCKFMVKPSTLLV 566 (645)
Q Consensus 548 qkqrv~lAral~~~p~lLl 566 (645)
|+|| |||+|+.+|+++.
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
No 232
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.28 E-value=8.6e-15 Score=153.69 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~ 322 (645)
.+||+||+||+..+++++.+|+++ ||| ..-.+.|.+ ++ .+.||+++||+...+..+
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hhchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 379999999999999999999987 999 222222322 33 478999999975544443
No 233
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.26 E-value=1.9e-14 Score=151.07 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=85.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCeeEEEECceecccc-------------------------hhcc-c
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNVLPN-------------------------YFEQ-N 496 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~--------~p~~G~i~~~g~~~~~~-------------------------~~~q-~ 496 (645)
++++|+|+||||||||++.|.|+. .|+.|+|.+||..+... ++.. .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999997 78999999988764210 1100 0
Q ss_pred hhhcCCCCCCHHHHHHhhhccc------cHHHH------HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCe
Q 006442 497 QAEALDLDKTVLETVAEAAEDW------RIDDI------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (645)
Q Consensus 497 ~~~~l~~~~tv~e~v~~~~~~~------~~~~~------~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 564 (645)
+...+.++.++.|+...+.... ..... ...+..++.. +..++. .+||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQM-NQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHH-HHCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHH-hhchHHHHHHHhCCEEEEECccc
Confidence 1112223444444332211000 00000 1112223332 222222 27999999999999999999998
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHH
Q 006442 565 LVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFV 603 (645)
Q Consensus 565 LlLDEPt~~LD~~s~~~l~~~l~~~--~~tvi~vsHd~~~i 603 (645)
+ ||| ..+.+.|++. +.||+++||+...+
T Consensus 163 ~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 163 A--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp C--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred C--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 7 999 5566666554 35999999954333
No 234
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.25 E-value=2.5e-14 Score=159.03 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=108.1
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCC-------ceEEEEeccCccCCCCCHHHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~Tv~eni~ 183 (645)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+.. ..+++..|........|..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47888999999999999999999999999999999999999999987643 23566666533222346666654
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhch-hcCCCcccc-
Q 006442 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (645)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~-~lgl~~~~~- 253 (645)
.++.. +.........++....... . ...+.+......+..+.. .+++.....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~-~-----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHA-S-----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCE-E-----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCC-c-----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 33221 0000000000000000000 0 000011122222222211 123322111
Q ss_pred --c---ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---ccCCCeEEE--EecCHHHHHhhc
Q 006442 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVI--ISHDRAFLDQLC 323 (645)
Q Consensus 254 --~---~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~g~tvIi--vsHd~~~l~~~~ 323 (645)
+ .....+||||+||+++|. + | |+|||+.....+.+.+ ...+.|+++ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223568999999987751 2 7 9999998776655544 345788875 899999998877
Q ss_pred C
Q 006442 324 T 324 (645)
Q Consensus 324 d 324 (645)
.
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 4
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.25 E-value=6.9e-13 Score=139.44 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=99.1
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc-c---------------hhccchhhcCCCCCCHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-N---------------YFEQNQAEALDLDKTVLET 510 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~---------------~~~q~~~~~l~~~~tv~e~ 510 (645)
.++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.. . ++. +...+++..+++++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~--q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIK--HSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEEC--CCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEe--ccccCCHHHHHHHH
Confidence 36899999999999999999999999999999999998877531 1 111 22334455677788
Q ss_pred HHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC
Q 006442 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590 (645)
Q Consensus 511 v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~ 590 (645)
+..+...... .-+++..|.. +.....+ ++.-.++|++..++.+++||.+|. .| ....+..+-+..+
T Consensus 204 l~~~~~~~~d---~vliDtaG~~-~~~~~l~-------~eL~~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~ 269 (328)
T 3e70_C 204 IQHAKARGID---VVLIDTAGRS-ETNRNLM-------DEMKKIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHHTCS---EEEEEECCSC-CTTTCHH-------HHHHHHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSC
T ss_pred HHHHHhccch---hhHHhhccch-hHHHHHH-------HHHHHHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcC
Confidence 7654211000 0012222221 1111222 233348999999999999996665 32 2222333333457
Q ss_pred ceEEEEecCH---------HHHHhhCCEEEEEeCCeEE
Q 006442 591 GTVITVSHDR---------YFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 591 ~tvi~vsHd~---------~~i~~~~d~v~~l~~g~i~ 619 (645)
.|+|++||.- +.+....-.|.++..|+-+
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 7999999954 2344556788888888754
No 236
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.25 E-value=2.6e-13 Score=146.54 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=95.3
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCeeEEEEC---ceec-ccchhccchh
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---EHNV-LPNYFEQNQA 498 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~---g~~~-~~~~~~q~~~ 498 (645)
+++++ ++.|++.+ ++++||+|++|++ ++|+||||||||||+++|+|+.- .|.-... +... ..++..|..
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~- 91 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES- 91 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC-
Confidence 66777 88998877 9999999999999 99999999999999999999841 1111000 0000 112222221
Q ss_pred hcCCCCCCHHHHHHhhhc-----cc------cHHHHHHHHhhc-CCCh---hhhccCc-----------CcCCHhHHHHH
Q 006442 499 EALDLDKTVLETVAEAAE-----DW------RIDDIKGLLGRC-NFKA---DMLDRKV-----------SLLSGGEKARL 552 (645)
Q Consensus 499 ~~l~~~~tv~e~v~~~~~-----~~------~~~~~~~~L~~~-~l~~---~~~~~~~-----------~~LSgGqkqrv 552 (645)
.+.+..|+.+++.++.. .| -...+..+|... ++.. ...+..+ ..|+-.+ +
T Consensus 92 -~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 92 -NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred -ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 11122333333322110 01 112334445544 3321 0112221 2455555 7
Q ss_pred HHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCH
Q 006442 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDR 600 (645)
Q Consensus 553 ~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~----~~~tvi~vsHd~ 600 (645)
.++++|..+++++++|||+..|.+.....+.+.|++ .+.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 899999999999999999999999888777777764 345888888764
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=3.2e-14 Score=158.23 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=99.9
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee-ccc---c---h-----------------
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-VLP---N---Y----------------- 492 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~-~~~---~---~----------------- 492 (645)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|++.|.. +.. . +
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 346889999999999999999999999999999999999999999997753 210 0 0
Q ss_pred ---hccchhhcCCCCCCHHHHHHh--hhc-c---c---cHHHHHHHHhhc-----CCChhhh---c---cCcCcCCHhHH
Q 006442 493 ---FEQNQAEALDLDKTVLETVAE--AAE-D---W---RIDDIKGLLGRC-----NFKADML---D---RKVSLLSGGEK 549 (645)
Q Consensus 493 ---~~q~~~~~l~~~~tv~e~v~~--~~~-~---~---~~~~~~~~L~~~-----~l~~~~~---~---~~~~~LSgGqk 549 (645)
++|+++..+..+.+..|++.. +.. . . ....+.+++.++ ++..... + .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 011111111112333332211 000 0 0 001122233332 2221111 1 23346899999
Q ss_pred HHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhCCE
Q 006442 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVIT--VSHDRYFVKQIVNR 609 (645)
Q Consensus 550 qrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~d~ 609 (645)
||+++|. + | |+|||+.+...+.+.|.++ +.|+++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987751 1 7 9999998877666666554 358875 89999999887753
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=1.3e-13 Score=145.76 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=104.6
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc--------------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~--------------~ 490 (645)
|+++++++.|+.+.+++++++++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.++. .
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 56678888887778999999999999999999999999999999999999999999998776541 1
Q ss_pred chhccchhhcCCCCC------------CHHHHH-------------------------Hhhhc------c-ccHHH----
Q 006442 491 NYFEQNQAEALDLDK------------TVLETV-------------------------AEAAE------D-WRIDD---- 522 (645)
Q Consensus 491 ~~~~q~~~~~l~~~~------------tv~e~v-------------------------~~~~~------~-~~~~~---- 522 (645)
+++.|.. .++... ++.+.+ ..... . ...+.
T Consensus 110 ~~v~q~~--~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 110 ARLAIDR--NAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp TTGGGCT--TEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred eeeccCc--ccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 2333321 111100 111111 00000 0 00000
Q ss_pred ---HHHHHhhcCCChhhhcc-CcCcCCHhHHHHHHHHHHHcc------CCCeEEeeCCCCCCCHHHHHHHHHHHHhc
Q 006442 523 ---IKGLLGRCNFKADMLDR-KVSLLSGGEKARLAFCKFMVK------PSTLLVLDEPTNHLDIPSKEMLEEAISEY 589 (645)
Q Consensus 523 ---~~~~L~~~~l~~~~~~~-~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPt~~LD~~s~~~l~~~l~~~ 589 (645)
+.+....+.+ ...|. ....+|+|++|++..|++++. .|+++. ||++|......|.+.|.++
T Consensus 188 ~~~i~~~~~ivvl--NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV--NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE--ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE--EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 1111111111 11232 234589999999999999987 688876 9999999999999988764
No 239
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=1.8e-12 Score=124.10 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=71.5
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
++.+.+|+.++|+||||||||||+++|++.+.|..|... .++ +..+.+. .+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~--------~~~------------~~~~~~~---------~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG--------YFF------------DTKDLIF---------RL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC--------CEE------------EHHHHHH---------HH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE--------EEE------------EHHHHHH---------HH
Confidence 456778999999999999999999999998876555210 010 0111110 01
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecC
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY---KGTVITVSHD 599 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~s~~~l~~~l~~~---~~tvi~vsHd 599 (645)
........ .. -....+.+|++||||||++ ++|+..+..+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111000 00 0112244899999999995 99999999999988753 5699999997
Q ss_pred HH
Q 006442 600 RY 601 (645)
Q Consensus 600 ~~ 601 (645)
..
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 63
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=1.3e-12 Score=125.13 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.6
Q ss_pred ccCCCEEEEeCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 006442 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (645)
Q Consensus 275 ~~~p~iLLLDEPts-~LD~~~~~~l~~~L~---~~g~tvIivsHd~ 316 (645)
+.+|++|+||||++ ++|+...+.+.+++. +.++++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34999999999985 999999998888764 3689999999975
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.21 E-value=1.6e-14 Score=156.61 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=50.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~ 159 (645)
++++++++.|+...+|+++ +. ++|++++|+|||||||||||++|+|+++|++|+|.+.+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 5666777777666678887 53 889999999999999999999999999999999987644
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.21 E-value=9.7e-13 Score=136.52 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=84.9
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccH
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~ 520 (645)
++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.+.+....... +.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------------~q---------- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------------EQ---------- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------------HH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------------HH----------
Confidence 455666 8999999999999999999999999998889998876553211000 00
Q ss_pred HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC-CCCCCHHHHHHHHHHHHhc-C-ceEEEEe
Q 006442 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP-TNHLDIPSKEMLEEAISEY-K-GTVITVS 597 (645)
Q Consensus 521 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-t~~LD~~s~~~l~~~l~~~-~-~tvi~vs 597 (645)
...+.+..++.- .... ...+..+-+|.+|+++...+++++|+||| +.++|......+.++.... . .+++++.
T Consensus 145 --l~~~~~~~~l~~--~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 145 --LRLLGEKVGVPV--LEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp --HHHHHHHHTCCE--EECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred --HHHhcccCCeEE--EEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 001122333321 1000 01233455788999998899999999999 9999998888887777643 2 3444443
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.21 E-value=5.9e-11 Score=127.87 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=81.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHH--HHcCCCCCee-----EEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG-----EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~--l~g~~~p~~G-----~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
-|++|++++|+||||||||||++. +.++.+++.| .+++++.....
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------------- 225 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------------- 225 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC----------------------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC----------------------------
Confidence 478999999999999999999994 4577766444 67776543110
Q ss_pred cHHHHHHHHhhcCCChhhh--ccCcCcCCHhHHH--HHHHHHHHc--cCCCeEEeeCCCCCCCHHHH------------H
Q 006442 519 RIDDIKGLLGRCNFKADML--DRKVSLLSGGEKA--RLAFCKFMV--KPSTLLVLDEPTNHLDIPSK------------E 580 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~--~~~~~~LSgGqkq--rv~lAral~--~~p~lLlLDEPt~~LD~~s~------------~ 580 (645)
..+++....++++..+.. +-.+.....++.+ .+.-+..++ .+|+++++||||+.+|.+.. .
T Consensus 226 -~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 226 -PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 001111112222211100 0011112223333 333233332 57999999999999996432 2
Q ss_pred HHHHHH----HhcCceEEEEecCH-------------------HHHHhhCCEEEEEeCC
Q 006442 581 MLEEAI----SEYKGTVITVSHDR-------------------YFVKQIVNRVVEVKGS 616 (645)
Q Consensus 581 ~l~~~l----~~~~~tvi~vsHd~-------------------~~i~~~~d~v~~l~~g 616 (645)
.+.+.| ++++.|||+|+|.. ..+...+|.+++|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 233333 34578999999983 2346678999999865
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.20 E-value=9.6e-14 Score=132.38 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEEcCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKS 159 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~---~G~I~~~~~ 159 (645)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 589999999999999999999999998 899988754
No 245
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=1.1e-11 Score=115.45 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECceecccchhccchhhcCCCCCCHHHHHHhhhc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE 516 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~ 516 (645)
+++++ +|+.++|+||||||||||+++|++.+.+ +| .+.+++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-------------~~~------------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-------------PLT------------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-------------CCC------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-------------hHH------------
Confidence 45665 8999999999999999999999999876 35 343332110 000
Q ss_pred cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc---Cce-
Q 006442 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGT- 592 (645)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~---~~t- 592 (645)
+++.+|++|+||||++ +|...++.+.++++.. +.+
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~ 117 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGF 117 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCE
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcE
Confidence 2356899999999998 6666688888887643 467
Q ss_pred EEEEecC
Q 006442 593 VITVSHD 599 (645)
Q Consensus 593 vi~vsHd 599 (645)
+|++||.
T Consensus 118 iiits~~ 124 (149)
T 2kjq_A 118 LLLGSEY 124 (149)
T ss_dssp EEEEESS
T ss_pred EEEECCC
Confidence 7888874
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.19 E-value=1.4e-12 Score=135.71 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc----------eEEEEeccCccC-----CCCCHHH
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVRE 180 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~~-----~~~Tv~e 180 (645)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ .|.+. .+||++|+|.+. +.+|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999998 55321 379999998654 56788 7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCC
Q 006442 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (645)
Q Consensus 181 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~L 260 (645)
|+...|.+.. .+.-.+..+ ....+....+.++++.+++.....++++..|
T Consensus 239 ~l~~~f~~~~-------~~~c~~~~~-----------------------~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 239 EVRNYFREFL-------RYQCKYPDC-----------------------THTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGGCGGGH-------HHHHHSTTC-----------------------CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------HccCCCCCC-----------------------CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7743332100 000000000 1112233467788899999755678889999
Q ss_pred ChHHHHHHHHHH
Q 006442 261 SSGWQMRMSLGK 272 (645)
Q Consensus 261 SGGqkqRvaLAr 272 (645)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 247
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=2e-11 Score=129.20 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=76.5
Q ss_pred EEEECCCCccHHHHHHHHHc-CCCCCccEEEEcCCC--------ceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHH
Q 006442 126 VGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (645)
Q Consensus 126 ~~lvG~NGsGKSTLl~~l~G-~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~ 196 (645)
+.|+||||+|||||+++|+| ++.|+.|.+.+++.. ..+++++|.+.+..+.+-.. . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--------- 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---ND--------- 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---cc---------
Confidence 89999999999999999999 788999988776432 34677777654322211000 0 00
Q ss_pred HHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHcc
Q 006442 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (645)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 276 (645)
...+++.+.++....++. ... .||| +..
T Consensus 106 -----------------------------------~~~~~~~i~~~~~~~~~~-----~~~-~ls~-----------l~~ 133 (354)
T 1sxj_E 106 -----------------------------------RIVIQELLKEVAQMEQVD-----FQD-SKDG-----------LAH 133 (354)
T ss_dssp -----------------------------------HHHHHHHHHHHTTTTC-----------------------------
T ss_pred -----------------------------------hHHHHHHHHHHHHhcccc-----ccc-cccc-----------cCC
Confidence 000111122222222221 111 5676 788
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcCeEE
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIV 327 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l-~~~~d~i~ 327 (645)
+|+|+|+|||++ ||+.+...|.+.+.+ .+.++|++||+.+.+ ..+..|+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSE
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhce
Confidence 999999999999 999999999998864 467899999997643 23444443
No 248
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=4.1e-12 Score=137.54 Aligned_cols=147 Identities=21% Similarity=0.210 Sum_probs=91.3
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCeeEEEECc-eecc----cchhccchhhcCCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE-HNVL----PNYFEQNQAEALDL 503 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g-~~~~----~~~~~q~~~~~l~~ 503 (645)
-++++|+++.|++++|+|+|||||||||++|++. +.|..|.+.+++ ..+. +++... .... .
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~--~ 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEG--K 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGS--C
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhh--h
Confidence 3789999999999999999999999999999998 456667776654 2211 111100 0000 0
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~ 583 (645)
.+.. ..+.. .+++..+|..+++. +.++.+||+|++|++.+|++|+.+|.+|+| |.+|......+.
T Consensus 224 ~L~~-~fl~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 224 GLGL-EFLRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CSCH-HHHHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred hhhH-HHHHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 0000 00000 00111223333332 456678999999999999999999999999 999997664333
Q ss_pred HHH---HhcCceEEEEe-cCHHHHH
Q 006442 584 EAI---SEYKGTVITVS-HDRYFVK 604 (645)
Q Consensus 584 ~~l---~~~~~tvi~vs-Hd~~~i~ 604 (645)
++. .+.+.++++|| |..+-+.
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HHHHHHHhcCCeEEEEECCCccCHH
Confidence 333 33344666655 4433333
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.16 E-value=3e-12 Score=140.05 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=98.6
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------------chhccchhhcCCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------------NYFEQNQAEALDL 503 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------------~~~~q~~~~~l~~ 503 (645)
-+++||++++|++++|+|+||||||||+++|+|++++.+|+|.+.+.+... +++.|+ ..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~--~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH--TGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS--TTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc--cCcCH
Confidence 367899999999999999999999999999999999999999997655421 112221 22334
Q ss_pred CCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc-cCC-CeEEeeCCCCCCCHHHHHH
Q 006442 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPS-TLLVLDEPTNHLDIPSKEM 581 (645)
Q Consensus 504 ~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~-~~p-~lLlLDEPt~~LD~~s~~~ 581 (645)
..++.+++..+...... . -+++..|.... ....+.+| ++++.+++++. ..| .+||...||.|.|.- ..
T Consensus 361 ~~tV~e~l~~a~~~~~D-v--VLIDTaGrl~~-~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ 430 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID-V--LIADTAGRLQN-KSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQ 430 (503)
T ss_dssp HHHHHHHHHHHHHTTCS-E--EEECCCCSCCC-HHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HH
T ss_pred HHHHHHHHHHHHhcCCC-E--EEEeCCCccch-hhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HH
Confidence 45677777654211000 0 01122222100 01111122 47788888764 446 355444588886543 22
Q ss_pred HHHHHHhcCceEEEEecCHHH----------HHhhCCEEEEEeCCeE
Q 006442 582 LEEAISEYKGTVITVSHDRYF----------VKQIVNRVVEVKGSNL 618 (645)
Q Consensus 582 l~~~l~~~~~tvi~vsHd~~~----------i~~~~d~v~~l~~g~i 618 (645)
+..+-...+.|.|++|| ++. +..+.-.|.++..|.-
T Consensus 431 ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence 22322345679999999 333 3334457777766653
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.15 E-value=1.4e-10 Score=125.01 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCcEEEEECCCCccHHHHHH--HHHcCCCCCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~--~l~G~~~p~~G 152 (645)
-|++|++++|+||||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58999999999999999999999 45677777554
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.15 E-value=2e-14 Score=140.45 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCeeEEEECceecc---cchhccch-hhcCCCCCCHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK-------------PRGGEVLLGEHNVL---PNYFEQNQ-AEALDLDKTVLET 510 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-------------p~~G~i~~~g~~~~---~~~~~q~~-~~~l~~~~tv~e~ 510 (645)
++|++++|+||||||||||+++|+|+++ |..|. ++|.++. ...+.... ...+.+..++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5799999999999999999999999875 44554 2333221 00111000 0000011111111
Q ss_pred HHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH---HHHH-HHccCCCeEEeeCCCCCCCHHHHHHHHHHH
Q 006442 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (645)
Q Consensus 511 v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPt~~LD~~s~~~l~~~l 586 (645)
+ .+ ....++...++.-.. ...+.. -.|-++.. ..++ +++.+|.+++|||||+++|.++.+.+++.|
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~--~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l 149 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRI--CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRL 149 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCE--EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCc--EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 00 123344444442110 000000 01111111 1456 788899999999999999999999999888
Q ss_pred HhcCceEEEEecCHHHHHhhCCEEEEEeC
Q 006442 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615 (645)
Q Consensus 587 ~~~~~tvi~vsHd~~~i~~~~d~v~~l~~ 615 (645)
.....- +.++| .. ..+|+|+++++
T Consensus 150 ~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 150 AAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 654221 34566 22 45899887753
No 252
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.14 E-value=1.3e-12 Score=135.05 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=77.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~ 200 (645)
+++.+++|+|++|||||||++.|.+.+.+. |. ....+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~-----~~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG-----GEKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG-----GGSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC-----CCceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 367899999999999999999999988753 20 012345559997653 446666653210000
Q ss_pred HHHhh--ccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcC---CCcccccccCCCCChHHHHHHHHHHHHc
Q 006442 201 KALES--AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG---FTADDGDRLVASFSSGWQMRMSLGKILL 275 (645)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg---l~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (645)
..+.. .+. ..+...+.+.+..+...+. -...........+||||+||+++|++..
T Consensus 91 ~l~~~~g~p~--------------------a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~ 150 (290)
T 1odf_A 91 KLLQGRGLPG--------------------THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK 150 (290)
T ss_dssp GGGSSSCSTT--------------------SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE
T ss_pred chhhhccCcc--------------------hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceE
Confidence 00000 000 0111111222222211110 0001122334789999999999983333
Q ss_pred cCCCEEEEeCCCCCCCHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDT 294 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~ 294 (645)
.+|+|||+||||+++|+..
T Consensus 151 ~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 151 LPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSEEEEEESSTTCCCCC
T ss_pred cCCCEEEEeCccccCCccc
Confidence 3999999999999999864
No 253
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.14 E-value=1.5e-13 Score=143.52 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=65.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEE-------------------ECCcEEEEECCCCccHHHHHHHHHcCCC--CCccEEE
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLl~~l~G~~~--p~~G~I~ 155 (645)
.|+++||++.| .++++++++.+ ++|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48899999999 46899999988 8999999999999999999999999988 9999998
Q ss_pred E---cCCCc------eEEEEeccCccCCCCCHHHHH
Q 006442 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (645)
Q Consensus 156 ~---~~~~~------~i~~v~Q~~~~~~~~Tv~eni 182 (645)
+ ++... .++++ |.+.+....|+.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 54321 24455 554444455665554
No 254
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.13 E-value=2.4e-13 Score=129.64 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECceeccc------chhc-cchhh--cCCCCCCHHHHHHhhhccc
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVLP------NYFE-QNQAE--ALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~------~~~~-q~~~~--~l~~~~tv~e~v~~~~~~~ 518 (645)
++++|+|+||||||||+++|+|+++|. .|.|.++|.++.. ..+. +.... .+...... .+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~----~~i~~~~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL----AFIRRVS 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE----EEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE----EEEecCC
Confidence 589999999999999999999999998 8999999876321 0111 00000 00000000 0000000
Q ss_pred cHH--HHHHHHhh-c-CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeE-------EeeCCCC---CCCHHHHHHHHH
Q 006442 519 RID--DIKGLLGR-C-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL-------VLDEPTN---HLDIPSKEMLEE 584 (645)
Q Consensus 519 ~~~--~~~~~L~~-~-~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPt~---~LD~~s~~~l~~ 584 (645)
... .+.+.+.. + ++.....+ .|||||+||++||||++.+|++. +-|.|.. .+|....+.+.+
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~ 154 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE 154 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence 001 23334433 2 34322212 39999999999999999998873 3355432 234455566666
Q ss_pred HHH
Q 006442 585 AIS 587 (645)
Q Consensus 585 ~l~ 587 (645)
+|.
T Consensus 155 ~i~ 157 (171)
T 2f1r_A 155 FIL 157 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 255
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=8.3e-11 Score=124.47 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCeeEEEECceecc--------cchhccchhhcCCCCCCHHHHHHhhhccccHHH
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g-~~~p~~G~i~~~g~~~~--------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~ 522 (645)
.+.|+||||+|||||+++|++ ++.|..|.+.++|.++. .+++.+.....+.... . .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence 389999999999999999999 78999999988875432 1111111100011100 0 0001112
Q ss_pred HHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCH
Q 006442 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDR 600 (645)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~ 600 (645)
+++.++.+.-... .+... .||| +..+|+++|+|||++ ||..+...+.+.+.+.. .++|++||+.
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 2333332211000 11111 4566 778999999999999 99999999999999863 4899999997
Q ss_pred HH
Q 006442 601 YF 602 (645)
Q Consensus 601 ~~ 602 (645)
+.
T Consensus 175 ~~ 176 (354)
T 1sxj_E 175 SP 176 (354)
T ss_dssp CS
T ss_pred HH
Confidence 53
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=4.9e-13 Score=131.37 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=35.5
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
.++|++++|+||||||||||+++|+|+++|. | ..+++++++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCC
Confidence 4789999999999999999999999999865 3 23667777643
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.10 E-value=1.1e-11 Score=131.37 Aligned_cols=111 Identities=17% Similarity=0.054 Sum_probs=69.7
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCeeEEEEC-ceec------ccchhccchhhcCCCCCCHHHHH
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHNV------LPNYFEQNQAEALDLDKTVLETV 511 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~-p~~G~i~~~-g~~~------~~~~~~q~~~~~l~~~~tv~e~v 511 (645)
++++++. .+|++++|+|+||||||||+++|+|+.+ |..|.|.+. |... ...+++|.. .+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh
Confidence 3344432 3799999999999999999999999999 999999876 5322 112333331 233334444431
Q ss_pred HhhhccccH----HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH
Q 006442 512 AEAAEDWRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (645)
Q Consensus 512 ~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral 558 (645)
. ..... ..+.++++.+++. ...++.+.+|| ||+||++||+++
T Consensus 283 l---~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 L---WHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C---CCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h---cCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 11111 2244567777874 56788999999 999999999875
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.10 E-value=3.2e-12 Score=132.21 Aligned_cols=120 Identities=14% Similarity=0.027 Sum_probs=74.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchh-ccchhhcCCCCCCHHHHHHhhh------------
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA------------ 515 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~q~~~~~l~~~~tv~e~v~~~~------------ 515 (645)
++.+++|+|++|||||||.+.|.+++.+. | .......+ .++ .. ..+.+..+++....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D--~f-~~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASID--DF-YLTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGG--GG-BCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccc--cc-cCChHHHHHHhccccccchhhhccCc
Confidence 46789999999999999999999998763 2 00001111 221 11 12334555554321
Q ss_pred ccccHHHHHHHHhhcCCCh-----h--hhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHH
Q 006442 516 EDWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (645)
Q Consensus 516 ~~~~~~~~~~~L~~~~l~~-----~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s 578 (645)
.......+.+.+..+.-.. . ........+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1122344555565553210 0 1123345799999999999844333999999999999999864
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.09 E-value=1.5e-12 Score=127.91 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=84.1
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCC---CeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+...... +.. .+ .... + .........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~-~~-~~~~----~---~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRG-LL-PRKG----A---PETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGT-CG-GGTT----S---GGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-Hhc-cc-ccCC----C---CchhhHHHH
Confidence 468999999999999999999999999985 578888877543211110 000 00 0000 0 001111222
Q ss_pred HHHHhhcC----CChhhhccCcCcCCHhHHHHHHHH-HHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 006442 524 KGLLGRCN----FKADMLDRKVSLLSGGEKARLAFC-KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598 (645)
Q Consensus 524 ~~~L~~~~----l~~~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsH 598 (645)
...+..+. +.....+ ....+|+||+|++++| ++++.++.++++|||.. ..+.+.-..+|++.+
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 22222211 1111122 2235799999999998 88888888888898841 112333457888888
Q ss_pred CHHH-HHhhCCE
Q 006442 599 DRYF-VKQIVNR 609 (645)
Q Consensus 599 d~~~-i~~~~d~ 609 (645)
+.+. +.+.+.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 8876 5555555
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=6.1e-11 Score=110.34 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.5
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
+++++ +|+.++|+||||||||||+++|+|.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 55555 8999999999999999999999998876 35
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=5.7e-13 Score=142.97 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=108.5
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc------------CCCCCccEEEEcCCC-----------c---eEEEEeccCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G------------~~~p~~G~I~~~~~~-----------~---~i~~v~Q~~~~ 172 (645)
.+++|..++|||+||+|||||+++|+| .+.|+.|.|.+.+.+ . ...++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 556889999887521 1 23467788877
Q ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc
Q 006442 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 173 ~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (645)
....+..+++...|. ..+.. ++.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl-------------~~ir~---------------------------------~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL-------------SHVRA---------------------------------VDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHH-------------HHHTT---------------------------------CSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHH-------------HHHHH---------------------------------HHHHHHHHhcc---
Confidence 666555443311110 00000 00112222211
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeE
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p--~iLLLDEPts~LD~~~~~~l~~~L----~~~g~tvIivsHd~~~l~~~~d~i 326 (645)
.+..+..+||+. +| +++++|||+.++|+...+...+.+ .+.|.|++ +|+...+..+|+++
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134556677763 99 999999999999999987776654 33466653 99999999999999
Q ss_pred E-EEcCc-eeEEeccChH
Q 006442 327 V-ETEMG-VSRTYEGNYS 342 (645)
Q Consensus 327 ~-~l~~G-~~~~~~g~~~ 342 (645)
. .|++| +. .+.+.++
T Consensus 193 ~~~L~~G~~~-~~~~~~~ 209 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWS 209 (392)
T ss_dssp HHHHHTTCSC-GGGSCCC
T ss_pred HHHhccCCce-eecCCCC
Confidence 9 88999 65 3445543
No 262
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=5.6e-13 Score=140.80 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=105.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECC-------cEEEEECCCCccHHHHHHHHHcCC----CCCccEEEEcC--------
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAK-------- 158 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLl~~l~G~~----~p~~G~I~~~~-------- 158 (645)
++.++++..|+...+++++++.|++| +.++|+||||+|||||+++|+|++ .+.+|.+...+
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788878999999999877 889999999999999999999988 56677665322
Q ss_pred --CCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHH
Q 006442 159 --SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (645)
Q Consensus 159 --~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (645)
....|.|++|...+.. ++.+++... ++.... +.+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~-----------------~~~~~~--~i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSA-----------------IEDFQI--DIM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHH-----------------HHTSCC--CC------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHH-----------------HHhccc--cee----------------eccCccc
Confidence 1236899988765532 555554211 000000 000 0000111
Q ss_pred HHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 006442 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (645)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~g~tvIiv 312 (645)
+.+...+..+++. ...+.+..||+|++||+.++ .+||+.+.+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li--~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLV--GATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEE--EEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEE--EecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 2333445555553 24566789999999998655 77888887777776643 23 3
Q ss_pred ecCHHHHHhhcCe
Q 006442 313 SHDRAFLDQLCTK 325 (645)
Q Consensus 313 sHd~~~l~~~~d~ 325 (645)
+|+.+.+..++++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 6888887777654
No 263
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.03 E-value=2.4e-12 Score=134.46 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=87.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEE-------------------ecCcEEEEEcCCCCcHHHHHHHHHcCCC--CCeeEEE
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i-------------------~~Ge~v~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~ 482 (645)
+|+++||++.|+ ++++++++.+ .+|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 488999999994 7899999988 8999999999999999999999999998 9999999
Q ss_pred E---Cceeccc------chhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHH
Q 006442 483 L---GEHNVLP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 483 ~---~g~~~~~------~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (645)
+ ||..... +++ |. ..+....++.+++.... .+--.......+....+.+ +|+.
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~--~~~~~~~~~~~~~~~~~-------------~l~~~~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KK--KGFPESYDMHRLVKFVS-------------DLKSGVPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TC--TTSGGGBCHHHHHHHHH-------------HHTTTCSCEEECCEETTTT--EECT
T ss_pred EEecCCccCcHHHHHhCCEe-ec--CCCCCCccHHHHHHHHH-------------HHhCCCCceeccccccccc--Cccc
Confidence 8 7754311 111 11 12223445555554321 1110001022333333433 3333
Q ss_pred HHHHHccCCCeEEeeCCCCCCCH
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDI 576 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~ 576 (645)
.+.+.+.+++++|+|.|....+.
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccceecCCCCEEEECchhhCCCc
Confidence 33345677899999999988773
No 264
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.01 E-value=9.2e-14 Score=142.76 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=39.9
Q ss_pred CeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
...+++++++++++| ++|+||||||||||+++|+|+..+ |.|.+++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g 77 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKG 77 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEET
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEc
Confidence 345789999999999 999999999999999999999876 5676654
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=1.5e-10 Score=120.48 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=73.2
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHH
Q 006442 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522 (645)
Q Consensus 443 vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~ 522 (645)
+++...+|++++|+|+|||||||++..|++.+.+.+|+|.+.+.+..... .. +.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------------a~------------eq 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------------AI------------EQ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------------HH------------HH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------------HH------------HH
Confidence 34556789999999999999999999999999988888887655431100 00 11
Q ss_pred HHHHHhhcCCChhhhccCcCcCCHhHHHHH---HHHHHHccCCCeEEeeCCCC
Q 006442 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARL---AFCKFMVKPSTLLVLDEPTN 572 (645)
Q Consensus 523 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPt~ 572 (645)
+..+++..++. . +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 151 L~~~~~~~gl~--~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LKIWGERVGAT--V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTCE--E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHcCCc--E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22344455552 1 335789999999 89999999999999999985
No 266
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.00 E-value=7.7e-13 Score=135.84 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=89.7
Q ss_pred CeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccch----------hccchhhcCCCCC
Q 006442 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY----------FEQNQAEALDLDK 505 (645)
Q Consensus 436 ~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----------~~q~~~~~l~~~~ 505 (645)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.+.++|.++...+ +.+.. ....+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a-~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA-KNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH-HHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH-HhcCCCe
Confidence 345789999999999 999999999999999999999877 68888876653221 11111 0111222
Q ss_pred CHHHHHHhhhccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC------------C
Q 006442 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN------------H 573 (645)
Q Consensus 506 tv~e~v~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~------------~ 573 (645)
++.|++........... .+......++.+..|||||+||+.|++|+..+|++| |||+. -
T Consensus 107 ~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 23333322111100000 011123456667789999999999999999999985 99964 3
Q ss_pred CCHHHHHHHHHHHH
Q 006442 574 LDIPSKEMLEEAIS 587 (645)
Q Consensus 574 LD~~s~~~l~~~l~ 587 (645)
-|.+.+..+.+.+.
T Consensus 178 P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 178 PPPADRLAILKTIT 191 (274)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777776654
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.98 E-value=8.5e-10 Score=114.32 Aligned_cols=134 Identities=14% Similarity=0.222 Sum_probs=85.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~~~~~~~~~~ 200 (645)
.+|++++|+|+||+||||++..|++.+.+.+|. +|.++.+++. ..+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999877772 4667777652 2333333210
Q ss_pred HHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHHHHHccCCCE
Q 006442 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (645)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~i 280 (645)
....+|++.. ...+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCE
Confidence 0111233210 0112 3445667775 499999
Q ss_pred EEEeCCCCCCCHHHHHHHH---HHHcc--CCCeEEEE--ecCHHHHHhhcCeEEEEcCce
Q 006442 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGV 333 (645)
Q Consensus 281 LLLDEPts~LD~~~~~~l~---~~L~~--~g~tvIiv--sHd~~~l~~~~d~i~~l~~G~ 333 (645)
+|+| |+|+|+.....+. .++.. ...+++++ +|....+.++++++..+..+.
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~g 243 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQ 243 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCE
Confidence 9999 9999987655444 34431 12234444 999999998888765444443
No 268
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=1.3e-12 Score=140.18 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=100.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCeeEEEECceecc------------c--chhccchhh
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGEHNVL------------P--NYFEQNQAE 499 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~------------~--~~~~q~~~~ 499 (645)
.+.+|.+++|+|+||+|||||+++|+| ...|..|.+.+.|.++. + .++.+. .
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~--p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI--A 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT--G
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEec--c
Confidence 456899999999999999999999999 56799999999863220 0 011111 1
Q ss_pred cCCCCCCHHHHHHhhhccccHHHHHHHHhhcCCC----hhhhccCcCcCCHhHHHHHHHHHHHccCC--CeEEeeCCCCC
Q 006442 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----ADMLDRKVSLLSGGEKARLAFCKFMVKPS--TLLVLDEPTNH 573 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~l~----~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDEPt~~ 573 (645)
.+....+..+++. ......+.....- ....+..+..+||+. +| +++++|||+..
T Consensus 94 Gl~~~~s~~e~L~--------~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 94 GLTKGASTGVGLG--------NAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp GGCCCCCSSSSSC--------HHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHH--------HHHHHHHHHHHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHH
Confidence 1222222111110 0011111111100 000134444566653 88 99999999999
Q ss_pred CCHHHHHHHHHHHHhc-C---ceEEEEecCHHHHHhhCCEEE-EEeCC-eEEeeCCChh
Q 006442 574 LDIPSKEMLEEAISEY-K---GTVITVSHDRYFVKQIVNRVV-EVKGS-NLQDYAGDYN 626 (645)
Q Consensus 574 LD~~s~~~l~~~l~~~-~---~tvi~vsHd~~~i~~~~d~v~-~l~~g-~i~~~~~~~~ 626 (645)
+|+...+...+.+... . .|| ++|+...+.++|+++. +|++| ++... +.++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~ 209 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRK-GDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeec-CCCC
Confidence 9999998888888765 2 354 3999999999999999 89999 77643 4433
No 269
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.95 E-value=6.2e-13 Score=140.46 Aligned_cols=162 Identities=22% Similarity=0.289 Sum_probs=104.0
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCeeEEEECceecc----
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNVL---- 489 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~G-------e~v~i~G~NGsGKSTLl~~l~g~~----~p~~G~i~~~g~~~~---- 489 (645)
++.++++..|++..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+.+|.+..++.++.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 55667888888888999999999887 899999999999999999999988 666776655443321
Q ss_pred ------cchhccchhhcCCCCCCHHHHHHhhhccc----------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHH
Q 006442 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (645)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~v~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (645)
..++.+. ..+. .++.+++....... ....+...+..+++. . ..+.+..||+|+|||++
T Consensus 99 ~~~~~~v~~iDE~--~~l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEI--HRLN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETG--GGCC--HHHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcch--hhcC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcC
Confidence 0112221 1222 25666664332111 112233345555553 2 56778899999999986
Q ss_pred HHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhCCE
Q 006442 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR 609 (645)
Q Consensus 554 lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i~~~~d~ 609 (645)
++ .+||+.+.+.+.++|++... ..-++|+.+.+..++++
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 54 78888888888888765321 01146887777666653
No 270
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.94 E-value=6.8e-11 Score=123.01 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=73.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc----------cchhccchhh---cCCCCCCHHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQAE---ALDLDKTVLETV 511 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~q~~~~---~l~~~~tv~e~v 511 (645)
..|++++|+||||||||||+++|+ +.+|.+|+|.+ +|.++. .+++.|++.. .+.+..|+ +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 468999999999999999999999 99999999998 775542 2344443211 11145677 776
Q ss_pred H--hh--------hc-----cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHH
Q 006442 512 A--EA--------AE-----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (645)
Q Consensus 512 ~--~~--------~~-----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAr 556 (645)
. +. .. ......+.++|+.+++.....++++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22 00 0112458899999999755778899999999899999986
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.94 E-value=6.5e-10 Score=115.21 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=87.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCC
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~T 177 (645)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+ .++. ...+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~---------~d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA---------ADTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE---------CCSS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec---------CCcc--cHhH
Confidence 45677888886543 778888 9999999999999999999999999988878776542 2221 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccC
Q 006442 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (645)
Q Consensus 178 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (645)
+ +.+ . .+....|++. ... .
T Consensus 142 ~-~ql--------------~-------------------------------------------~~~~~~~l~~-~~~--~ 160 (295)
T 1ls1_A 142 R-EQL--------------R-------------------------------------------LLGEKVGVPV-LEV--M 160 (295)
T ss_dssp H-HHH--------------H-------------------------------------------HHHHHHTCCE-EEC--C
T ss_pred H-HHH--------------H-------------------------------------------HhcccCCeEE-EEc--C
Confidence 0 000 0 0001112211 100 0
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHc
Q 006442 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~iLLLDEP-ts~LD~~~~~~l~~~L~ 303 (645)
......+.+|.+|+++...++|++|+||| +.++|......+..+.+
T Consensus 161 ~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 161 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 11233456789999998899999999999 99999988887766553
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=5.2e-11 Score=123.84 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc----------eEEEEeccCcc
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~ 172 (645)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ .|.+. .++|++|.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 455679999999999999999999999999999999997 44321 37999999864
No 273
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=5.7e-11 Score=123.39 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---cCCCc-------e--EEEEeccCccCC----CCCHHHH
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM-------K--IAFLSQEFEVSM----SRTVREE 181 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~---~~~~~-------~--i~~v~Q~~~~~~----~~Tv~en 181 (645)
+++.+|++++|+|+||+|||||+++|+|+.+|..|+|.+ .|... . ++|++|.|.+.. ..|+ +|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999986 33221 1 699999997654 5688 88
Q ss_pred HHHhh
Q 006442 182 FMSAF 186 (645)
Q Consensus 182 i~~~~ 186 (645)
+...|
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 85444
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.92 E-value=1.2e-09 Score=113.17 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=87.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~ 526 (645)
.+|++++|+|+|||||||++..|++.+.+.+| +|.+-+.+.. ..+..+.+ ..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~--------------r~~a~eqL------------~~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY--------------RIAAVEQL------------KTY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS--------------STTHHHHH------------HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc--------------cchHHHHH------------HHH
Confidence 47899999999999999999999999988777 5554332210 11222222 122
Q ss_pred HhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecC
Q 006442 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----K-GTVITV--SHD 599 (645)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~----~-~tvi~v--sHd 599 (645)
.+..|+... . ..+ +..-+.+|+++ .+++++|+| |+|+|......+.++.+-. . .+++++ +|+
T Consensus 157 ~~~~gl~~~----~--~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLE----V--CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCC----B--CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeE----e--cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 233343210 0 012 34456666654 899999999 9999988776666544322 1 245555 999
Q ss_pred HHHHHhhCCEEEEEeCCeEE
Q 006442 600 RYFVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 600 ~~~i~~~~d~v~~l~~g~i~ 619 (645)
.+.+.++++++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99898888877656666665
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.91 E-value=3.2e-10 Score=124.42 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=60.5
Q ss_pred hccCcCcCCHhHHHHH--HHHHHHcc---------------CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 006442 537 LDRKVSLLSGGEKARL--AFCKFMVK---------------PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599 (645)
Q Consensus 537 ~~~~~~~LSgGqkqrv--~lAral~~---------------~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd 599 (645)
.++....+||||+|.. +||.++++ .-.+++|||+ +-+|.+..+.+.+++++++--+|+++-+
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~ 451 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE 451 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc
Confidence 3556778999999973 44444432 1257999999 9999999999999999999999999988
Q ss_pred HHHHHhhCCEEEEEe
Q 006442 600 RYFVKQIVNRVVEVK 614 (645)
Q Consensus 600 ~~~i~~~~d~v~~l~ 614 (645)
.+..++|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 6767788888774
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.91 E-value=4.1e-10 Score=117.10 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=36.5
Q ss_pred eeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999999999999998877777653
No 277
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.89 E-value=4.7e-10 Score=123.11 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=47.7
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4579999999999 99999999999999999999999999999999988654
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.86 E-value=1.5e-08 Score=100.98 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=41.4
Q ss_pred cCCCEEEEeCCCCCC--CHHH-HH---HHHHHHccCCCeEEEEecCHHH--------HHhhcCeEEEEcC
Q 006442 276 QDPDLLLLDEPTNHL--DLDT-IE---WLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (645)
Q Consensus 276 ~~p~iLLLDEPts~L--D~~~-~~---~l~~~L~~~g~tvIivsHd~~~--------l~~~~d~i~~l~~ 331 (645)
.+|+++++|+|+..+ |+.. ++ .+.+.+++.|+|||+++|.... +.++||.|+.+..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5533 22 2334456789999999998876 5678899998864
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.85 E-value=2.1e-08 Score=99.84 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=40.3
Q ss_pred cCCCeEEeeCCCCCC--CHHHH-HH---HHHHHHhcCceEEEEecCHHH--------HHhhCCEEEEEeC
Q 006442 560 KPSTLLVLDEPTNHL--DIPSK-EM---LEEAISEYKGTVITVSHDRYF--------VKQIVNRVVEVKG 615 (645)
Q Consensus 560 ~~p~lLlLDEPt~~L--D~~s~-~~---l~~~l~~~~~tvi~vsHd~~~--------i~~~~d~v~~l~~ 615 (645)
.+|+++++|+|+..+ |+... +. +.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 55333 22 333344567799999998775 5678999999963
No 280
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=4.2e-10 Score=116.97 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=64.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc----------cchhccchh--------------h
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL----------PNYFEQNQA--------------E 499 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~----------~~~~~q~~~--------------~ 499 (645)
+..|++++|+|||||||||||++|+|+.+|++|+|.+ +|.++. .+++.|.+. .
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 4469999999999999999999999999999999998 776541 223333321 2
Q ss_pred cCCCCCCHHHHHHhhhc---cccHHHHHHHHhhcCCChhhhccCcCcCCH
Q 006442 500 ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (645)
Q Consensus 500 ~l~~~~tv~e~v~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (645)
.++++.++ +|+.+... ......+.++|+.+++..+..++.+..||+
T Consensus 246 ~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 246 HYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35667777 77765321 122346889999999965677888888885
No 281
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.76 E-value=6.7e-10 Score=130.28 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.6
Q ss_pred eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 443 vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
.++.+.++..+.|+||+|||||||.++|++.+.. +-+.+++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~ 546 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPE 546 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechH
Confidence 4667889999999999999999999999998642 334444433
No 282
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.71 E-value=6.5e-09 Score=114.20 Aligned_cols=173 Identities=10% Similarity=0.087 Sum_probs=99.6
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEEECceecccchhccch-hhcCCCCCCHHHHHHhhh
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQ-AEALDLDKTVLETVAEAA 515 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~q~~-~~~l~~~~tv~e~v~~~~ 515 (645)
+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| .+.+-+......-+.+.. .... .... +.+..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~--~~~~-~~l~~g- 266 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEG--NINA-QNLRTG- 266 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHH--TCCH-HHHHTS-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHc--CCCH-HHHhcC-
Confidence 457777767999999999999999999999999987755444 344322221111111000 0000 0000 111111
Q ss_pred ccccH---HHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHc--cCCCeEEeeCCCCCCCHH--------HHHHH
Q 006442 516 EDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIP--------SKEML 582 (645)
Q Consensus 516 ~~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~--------s~~~l 582 (645)
.... ..+...++.++.. ...-.....+|.+|.+ ..++.+. .+|+++|+|+++...+.. ....+
T Consensus 267 -~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i 342 (454)
T 2r6a_A 267 -KLTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEI 342 (454)
T ss_dssp -CCCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHH
Confidence 0111 1223333333221 1222234579999987 4556655 679999999999987532 12333
Q ss_pred HHHHH----hcCceEEEEec---------C--HH--------HHHhhCCEEEEEeCCeE
Q 006442 583 EEAIS----EYKGTVITVSH---------D--RY--------FVKQIVNRVVEVKGSNL 618 (645)
Q Consensus 583 ~~~l~----~~~~tvi~vsH---------d--~~--------~i~~~~d~v~~l~~g~i 618 (645)
.+.|+ +++.+||+++| | +. .+...||.|++|..+..
T Consensus 343 ~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 343 SRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 33343 45779999999 3 22 57778999999986543
No 283
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.70 E-value=9.3e-10 Score=121.60 Aligned_cols=168 Identities=10% Similarity=0.056 Sum_probs=96.0
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCeeEEEECceecccchhccc-hhhcC-C-CCCCHHH---HHHh
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLLGEHNVLPNYFEQN-QAEAL-D-LDKTVLE---TVAE 513 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~~~g~~~~~~~~~q~-~~~~l-~-~~~tv~e---~v~~ 513 (645)
-+++.+..+.++.|.|.+||||||++++|.. +..++.|.+.+...|.+..-+... .-+.+ . .-.++.+ .+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~ 238 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRW 238 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHH
Confidence 3678888999999999999999999999876 445555665554444332111110 00011 0 0112211 1111
Q ss_pred hhccccHHHHHHHHhhcCCChhhhc---cCcCcCCHhHHHHH----------HHHHHHccCCC-eEEeeCCCCCCCHHHH
Q 006442 514 AAEDWRIDDIKGLLGRCNFKADMLD---RKVSLLSGGEKARL----------AFCKFMVKPST-LLVLDEPTNHLDIPSK 579 (645)
Q Consensus 514 ~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPt~~LD~~s~ 579 (645)
... ..++-.+.+...|+. +..+ +....+|+||+|+. ++|+++...|. ++++||++..+|....
T Consensus 239 ~~~--EmerR~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 239 CVN--EMERRYKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 111 111223567777763 2221 22235788988752 35666777887 8999999999884321
Q ss_pred ---HHHHHHHH---hcCceEEEEecCHH-------HHHhhCCEEEE
Q 006442 580 ---EMLEEAIS---EYKGTVITVSHDRY-------FVKQIVNRVVE 612 (645)
Q Consensus 580 ---~~l~~~l~---~~~~tvi~vsHd~~-------~i~~~~d~v~~ 612 (645)
..+.++.+ .++.++|++||+.. ...++.+||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 22222222 33569999999987 45566667654
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.69 E-value=2.5e-09 Score=121.67 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=100.1
Q ss_pred eEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEEcCC-----CceEEEEeccCccCCC
Q 006442 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKS-----NMKIAFLSQEFEVSMS 175 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~-G~I~~~~~-----~~~i~~v~Q~~~~~~~ 175 (645)
+++.-|+...+++++++.+.+|+.++|+||||+|||||+++|+|+.++.. |.+.+.+. ...++|+++...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~---- 114 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQG---- 114 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHH----
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchH----
Confidence 34444677789999999999999999999999999999999999999887 66666432 235788877431
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCCh---hcHHHHHHhhchhcCCCccc
Q 006442 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTADD 252 (645)
Q Consensus 176 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ll~~lgl~~~~ 252 (645)
+.+.......... ..+.....+.... ......++- ........ ........+++..+...
T Consensus 115 ----~~~~e~~~~~~~~--~~~~r~~~~~~~~--~~~~~nl~v------~~~~~~~~~~v~~~~~~~~~L~G~~~~~--- 177 (604)
T 3k1j_A 115 ----RRIVEKYREKAKS--QESVKSSNMRLKS--TVLVPKLLV------DNCGRTKAPFIDATGAHAGALLGDVRHD--- 177 (604)
T ss_dssp ----HHHHHHHHHHHHH--HTCC-------------CCCEEEE------CCTTCSSCCEEECTTCCHHHHHCEECCC---
T ss_pred ----HHHHHHHHHhhcc--chhhhhhcccccc--cccccceee------ccccCCCCCEEEcCCCCHHhcCceEEec---
Confidence 1111000000000 0000000000000 000000000 00000000 00000011222222111
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
......+|+|++|++..++....++.+|+|||.-. |++.....|.+.|.
T Consensus 178 -~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 -PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp -CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred -hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 11225699999999999999999999999999988 89999999988875
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.69 E-value=9.8e-10 Score=106.74 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC----------CceEEEEeccCcc
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEV 172 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~----------~~~i~~v~Q~~~~ 172 (645)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 57888999999999999999999999999974 2333221 1246788887644
No 286
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=4.9e-10 Score=111.47 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=42.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 97 ~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
.|+++|+...|+. +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4788888766532 466666 89999999999999999999999999999988765
No 287
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.66 E-value=6.3e-10 Score=122.94 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=94.0
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEEcCCCceEEEEeccCccCCCC--CHHHHHHHhhHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~--Tv~eni~~~~~~~~ 190 (645)
.+++.+.++..+.|.|++||||||+++.|.. ++.++.|++.+...+.+- .-++.....+.. +|.++...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 3678888999999999999999999999876 455555655432111110 001111111111 2222211000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCccc--ccccCCCCChHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDRLVASFSSGWQMRM 268 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~--~~~~~~~LSGGqkqRv 268 (645)
..+.++ . .+++++. +++...|+..-. ..+....+|+||+|+.
T Consensus 234 ---~~L~~~-----------------~---------------~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC-----------------V---------------NEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH-----------------H---------------HHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH-----------------H---------------HHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 0 0122222 344455543110 0111235678887652
Q ss_pred ----------HHHHHHccCCC-EEEEeCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcC
Q 006442 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (645)
Q Consensus 269 ----------aLAraL~~~p~-iLLLDEPts~LD~~~---~~~l~~~L---~~~g~tvIivsHd~~-------~l~~~~d 324 (645)
++|+++...|. ++++||++..+|... .+.+..+. ++.|.++|++||+.. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667778898 899999999888432 22222222 345899999999987 4567777
Q ss_pred eEEEE
Q 006442 325 KIVET 329 (645)
Q Consensus 325 ~i~~l 329 (645)
||++-
T Consensus 358 RI~lr 362 (512)
T 2ius_A 358 RIAFT 362 (512)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 87653
No 288
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.66 E-value=2.6e-11 Score=124.36 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=84.9
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceeccc----------chhc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYFE 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~----------~~~~ 494 (645)
.+++++.+.|+...+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.++.. .++.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 45567777777677899999999999 99999999999999999999885 6888887654321 1112
Q ss_pred cchhhcCCCCCCHHHHHHhhhcccc------HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|... ...+...+.|++........ ..+....+ ++.+..|||||+||+.+++|+..+|++ ||
T Consensus 126 ~~~~-~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~----------~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL----------NQLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHH-TSCSEEEEEETHHHHHCC--------CHHHHHHH----------HHHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHH-hcCCcEEehhhhHhhhcccccccCCcchHHHHHH----------HHHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 2211 12233344455432111000 01111111 223345999999999999999999987 67
Q ss_pred CCC
Q 006442 569 EPT 571 (645)
Q Consensus 569 EPt 571 (645)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 664
No 289
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.65 E-value=2.4e-08 Score=105.75 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=46.5
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 006442 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (645)
Q Consensus 266 qRvaLAraL~~~--p~iLLLDEPts~L----------D~----~~---~~~l~~---~L~~~g~tvIivsHd~~------ 317 (645)
+-+.++++++.+ |+++++|+|++.+ |+ .. .+.+.+ ++++.++|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678877654 9999999999998 32 11 222222 34667999999999654
Q ss_pred ----------HHHhhcCeEEEEcCce
Q 006442 318 ----------FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ----------~l~~~~d~i~~l~~G~ 333 (645)
.+..+||.++.++.+.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEee
Confidence 2567899888886654
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.65 E-value=5.7e-09 Score=100.52 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 551 rv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
.+.+|++++.+|+++++| ||++|..+...+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
No 291
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.62 E-value=2.8e-12 Score=131.61 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 3456666676667899999999999 89999999999999999999875 6666654
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=9.2e-09 Score=102.25 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=23.3
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHH-cCCCC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEEP 149 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~-G~~~p 149 (645)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.61 E-value=3.3e-11 Score=121.76 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=84.4
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccc----------hhc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN----------YFE 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~----------~~~ 494 (645)
.+++++.+.|+...+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.++... ++.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45667777776667899999999999 99999999999999999999875 68888876543211 111
Q ss_pred cchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
|... ...+...+.|++....... ...+....+ ++....|||||+||+.+++|+..+|++ ||
T Consensus 102 ~~~~-~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~----------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 102 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL----------NQLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHHT-TSSSEEEEEETHHHHHC---------CHHHHHHH----------HHHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHHH-hcCCeEEEehhhhhhhcccCccccccchHHHHHH----------HHHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 1110 1122333444442211100 001111111 222345899999999999999999987 68
Q ss_pred CCCC
Q 006442 569 EPTN 572 (645)
Q Consensus 569 EPt~ 572 (645)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 7764
No 294
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=2.6e-09 Score=110.91 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=54.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE---Cceecc---------cchhccchhhcCCC----CCCHHHH
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVL---------PNYFEQNQAEALDL----DKTVLET 510 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~---~g~~~~---------~~~~~q~~~~~l~~----~~tv~e~ 510 (645)
+.+|++++|+|+||+|||||+++|+|+.+|..|+|.+ +|..+. .+++.|.+ .+.. ..++ ++
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtp--g~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTP--GFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSC--SCSSCCCTTCCH-HH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCC--CccccccccCCH-HH
Confidence 4579999999999999999999999999999999987 665431 23444442 2221 5678 88
Q ss_pred HHhhhc-----------------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHH
Q 006442 511 VAEAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (645)
Q Consensus 511 v~~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (645)
+..... ......+.++|+.+++... .......|+.|++|
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhh
Confidence 732111 0112357888999998532 33444556667776
No 295
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.56 E-value=1.4e-09 Score=108.07 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred EEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 424 ~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
.|+++|+...|+. +++|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3888998866642 566777 89999999999999999999999999999999988764
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.56 E-value=4.6e-08 Score=94.09 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 267 RvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
.+.+|++++.+|+++++| ||++|...++.+.+.|.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 467899999999999999 99999999999988764
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.55 E-value=8.9e-08 Score=105.10 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=100.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
+.|+++..-+++|+++.|.|++|+|||||+..|++...+..| ..+.|++-+- +..+-.........
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E~------s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLEM------SAQQLVMRMLCAEG 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESSS------CHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECCC------CHHHHHHHHHHHHc
Confidence 468888878999999999999999999999999987654333 1355655432 22221100000000
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaL 270 (645)
.. ...+ +.. ..+.... ..++.+.+..++..+-..+ ....+|.++.+ +.
T Consensus 257 ~~--~~~~----l~~----------------------g~l~~~~-~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~ 304 (454)
T 2r6a_A 257 NI--NAQN----LRT----------------------GKLTPED-WGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AK 304 (454)
T ss_dssp TC--CHHH----HHT----------------------SCCCHHH-HHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HH
T ss_pred CC--CHHH----Hhc----------------------CCCCHHH-HHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HH
Confidence 00 0000 000 0000000 0122222222222111222 24678999887 45
Q ss_pred HHHHc--cCCCEEEEeCCCCCCCHH--------HHHHHHHHH----ccCCCeEEEEec---------C--HH--------
Q 006442 271 GKILL--QDPDLLLLDEPTNHLDLD--------TIEWLEGYL----GKQDVPMVIISH---------D--RA-------- 317 (645)
Q Consensus 271 AraL~--~~p~iLLLDEPts~LD~~--------~~~~l~~~L----~~~g~tvIivsH---------d--~~-------- 317 (645)
++.+. .+|+++++|+++...+.. ....+...| ++.+++||+++| + +.
T Consensus 305 ~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg 384 (454)
T 2r6a_A 305 CRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESG 384 (454)
T ss_dssp HHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTC
T ss_pred HHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccc
Confidence 56665 689999999999988532 123333333 457999999999 2 22
Q ss_pred HHHhhcCeEEEEcCce
Q 006442 318 FLDQLCTKIVETEMGV 333 (645)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (645)
.+.+.||.|+++..+.
T Consensus 385 ~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 385 SIEQDADIVAFLYRDD 400 (454)
T ss_dssp SHHHHCSEEEEEEETT
T ss_pred hhHhhCCEEEEEeccc
Confidence 4677899999996543
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.53 E-value=5.2e-09 Score=105.69 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.2
Q ss_pred ccEEEEeE-EEEe-CCeeeeeeeeEEEEC---CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 96 ~~i~i~nl-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+.|+++|+ +|+| ++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 677899999999999 9999999999999999999999854
No 299
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.51 E-value=7.8e-06 Score=101.24 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+++|+.+.|.||+|+|||||+..++....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999987653
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.51 E-value=2e-08 Score=99.76 Aligned_cols=177 Identities=10% Similarity=0.107 Sum_probs=71.1
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCCC------------CeeEEEECceecccchhccchhhcCCCC
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLEKP------------RGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~-g~~~p------------~~G~i~~~g~~~~~~~~~q~~~~~l~~~ 504 (645)
....++||++++|++++|+||||||||||+++|+ |++++ ..|.+ +|.+ |..+..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~----~~~~~~------- 81 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKD----YYFVDR------- 81 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTT----BEECCH-------
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCe----EEEecH-------
Confidence 3468899999999999999999999999999999 99843 33322 1111 111110
Q ss_pred CCHHHHHHhhh------------ccccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHH-HHH-HHHccCCCeEEeeCC
Q 006442 505 KTVLETVAEAA------------EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL-AFC-KFMVKPSTLLVLDEP 570 (645)
Q Consensus 505 ~tv~e~v~~~~------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv-~lA-ral~~~p~lLlLDEP 570 (645)
.....+.... .......+...++.-.. -..+-.+. -...-++++ .-+ ..++..|+..+++|+
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 82 -EEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp -HHHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred -HHhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 0001110000 00001122333332110 00111000 001112322 111 234567788889999
Q ss_pred CCCCCHHHHHHHHHHHHh----c----CceEEEEecCHHHHHhhCCEEEEEeCCeEEeeCCChhHHHHHH
Q 006442 571 TNHLDIPSKEMLEEAISE----Y----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNQVQSLW 632 (645)
Q Consensus 571 t~~LD~~s~~~l~~~l~~----~----~~tvi~vsHd~~~i~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 632 (645)
+...|..+.+.+.+.|.. . ...++++.||++.+.+-..+++....++.. .....++++...
T Consensus 158 l~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~ 226 (231)
T 3lnc_A 158 LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLESR 226 (231)
T ss_dssp --------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhcc
Confidence 999998887766655532 1 137888899988877666666544444433 234555555443
No 301
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.48 E-value=4.5e-07 Score=95.95 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=80.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
-+++|+++.|.||+|||||||+..++.......|.+ +++... .. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~------------~~----~~~---------------- 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH------------AL----DPE---------------- 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC------------CC----CHH----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC------------Cc----CHH----------------
Confidence 478999999999999999999888876543333333 332210 00 000
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccC--CCeEEeeCCCCCC----------CH---HH----HHHHHHH
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP--STLLVLDEPTNHL----------DI---PS----KEMLEEA 585 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~--p~lLlLDEPt~~L----------D~---~s----~~~l~~~ 585 (645)
...++|+..+... .....+. .+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.++
T Consensus 105 -~a~~lG~~~~~l~-i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 105 -YAKKLGVDTDSLL-VSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp -HHHHTTCCGGGCE-EECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred -HHHHcCCCHHHeE-EecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 0112232211000 0001232 2345677777654 9999999999998 32 11 1222222
Q ss_pred ---HHhcCceEEEEecCHH----------------HHHhhCCEEEEEeCCeEE
Q 006442 586 ---ISEYKGTVITVSHDRY----------------FVKQIVNRVVEVKGSNLQ 619 (645)
Q Consensus 586 ---l~~~~~tvi~vsHd~~----------------~i~~~~d~v~~l~~g~i~ 619 (645)
+++++.|||+++|-.. .+..+||.++.+..++..
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 3456789999999643 256789999999876554
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=2e-08 Score=114.23 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=96.3
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe-eEEEECceeccc-----chhccchhh---
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGEHNVLP-----NYFEQNQAE--- 499 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~-G~i~~~g~~~~~-----~~~~q~~~~--- 499 (645)
+++.-|+...+++.+++.+..|+.+.|+||||||||||+++|++++++.. |.+.+.+..... .++++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 44555677788999999999999999999999999999999999998887 677765543210 111110000
Q ss_pred -----------------cCCCCCCHHHHHHhhhc--------cccHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHH
Q 006442 500 -----------------ALDLDKTVLETVAEAAE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (645)
Q Consensus 500 -----------------~l~~~~tv~e~v~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~l 554 (645)
......++..|+..... .........+++.+... ......+|+|++|++..
T Consensus 119 e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 119 EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGGEEC
T ss_pred HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccccccC
Confidence 00000000001000000 00000111222221110 12224699999999998
Q ss_pred HHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 555 Aral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
+++...++.+|+|||... |++.....|.++|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 989999999999999988 899999999999984
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.47 E-value=8.3e-08 Score=91.37 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=46.3
Q ss_pred eee--eeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EEcC-------CCceEEEEeccCc
Q 006442 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK-------SNMKIAFLSQEFE 171 (645)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I---------~~~~-------~~~~i~~v~Q~~~ 171 (645)
..+ ++++|.+.+| +++|+||||||||||+++|.+.+.+..|.. ...+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7889999999 999999999999999999999887766532 1111 2346888888763
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.45 E-value=1.4e-08 Score=102.53 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.4
Q ss_pred cEEEEEee-eeee-CCeeceeeeeEEEec---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 423 ~~i~~~~v-~~~y-~~~~~l~~vsl~i~~---Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++|+++|+ ++.| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999 777899999999999 9999999999999999999999865
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.43 E-value=1.3e-09 Score=116.37 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=78.7
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE-Ccee----cccchhccchhhcCCCCCCHHHHHH
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHN----VLPNYFEQNQAEALDLDKTVLETVA 512 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~-~g~~----~~~~~~~q~~~~~l~~~~tv~e~v~ 512 (645)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+.. .... ...++++|... .+..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 579999999999999999999999999999999995 4677665 2111 01112222110 0000000000000
Q ss_pred hhhc--cc--cHHHHHHHHh---------------hcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEE-eeCCCC
Q 006442 513 EAAE--DW--RIDDIKGLLG---------------RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTN 572 (645)
Q Consensus 513 ~~~~--~~--~~~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPt~ 572 (645)
.... .. ....+...++ ..-+.....+.....+++|+++|++.+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000 00 0011223332 11122234567778899999999999888899999988 999997
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.42 E-value=8.8e-08 Score=93.18 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~~ 531 (645)
+++|+|+|||||||+.++|+++ |...++..++ .... ..+. ...+..+...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~----~~~~----~~~~---------------~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV----AREV----VAKD---------------SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH----HHHT----TCSS---------------CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH----HHHH----ccCC---------------hHHHHHHHHHhC
Confidence 6899999999999999999983 4444443211 1000 0000 012233344444
Q ss_pred CChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--HhhCC
Q 006442 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KGTVITVSHDRYFV--KQIVN 608 (645)
Q Consensus 532 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~d 608 (645)
.. . ..+.|+.+|..+++.+..+|..+..+ ++.+++..+..+.+.+... +.+||+.+|.+... ...||
T Consensus 56 ~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 31 1 14678999999999888887654333 3456677777777777654 34788888987665 56799
Q ss_pred EEEEEeC
Q 006442 609 RVVEVKG 615 (645)
Q Consensus 609 ~v~~l~~ 615 (645)
++++++.
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999964
No 307
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.41 E-value=7.1e-08 Score=93.13 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHh
Q 006442 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 552 v~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~ 588 (645)
...|++++.+|+++++| ||++|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35688999999999999 999999999888877753
No 308
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.40 E-value=3.5e-07 Score=97.11 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=46.2
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 006442 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (645)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~iLLLD-EPts~LD~~~~~~l~~~L~~-~-g~tvIivs--Hd~~ 317 (645)
.++..+|+|++|++. +.+...++-++++| +|.+++|......+...+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55555677789999 99999998876555444432 2 78899998 8864
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=2.6e-07 Score=101.57 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=72.1
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
.++++++.+++| +.|+||+|+|||||+++|++..... -+.+ +.. .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~i------------s~~-~~~---------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHI------------SGS-DFV---------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEE------------EGG-GTT----------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeC------------CHH-HHH----------------
Confidence 455566666666 8899999999999999999854210 0000 000 000
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCC----------CCCCCHHHHHHHHHHHHh
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP----------TNHLDIPSKEMLEEAISE 588 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------t~~LD~~s~~~l~~~l~~ 588 (645)
...+ =.+++++|..+++|....|.||++||+ +++.|.+..+.+.+++..
T Consensus 87 -------------------~~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 87 -------------------ELFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp -------------------TCCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred -------------------HHHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 0000 026788888999999999999999999 346777766666666653
Q ss_pred c-------CceEEEEecCHHHHH
Q 006442 589 Y-------KGTVITVSHDRYFVK 604 (645)
Q Consensus 589 ~-------~~tvi~vsHd~~~i~ 604 (645)
. +..||.+||+.+.+.
T Consensus 146 ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhccCCCCCEEEEEecCChhhhc
Confidence 2 237899999986553
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.38 E-value=1.3e-07 Score=91.59 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=30.3
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECce
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~ 486 (645)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 57788999999999999999999999999974 3555543
No 311
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.38 E-value=1.8e-07 Score=99.53 Aligned_cols=133 Identities=15% Similarity=0.243 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCeeEEEECceecc----cchhccchhhcCCCCCCHHHHHHhh--
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNVL----PNYFEQNQAEALDLDKTVLETVAEA-- 514 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~-----------p~~G~i~~~g~~~~----~~~~~q~~~~~l~~~~tv~e~v~~~-- 514 (645)
+++|+|++|||||||++.|+|... |..|.+.++|.++. ++++.+.+........+..+.+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 399999999999999999999875 56789999886542 2332211000000000011111100
Q ss_pred ----hc--ccc------HHHHHHHHhhcCCChh---hhccCcCcCCHhHHHHHHHH----HHH-ccCCCeEEeeCCCCCC
Q 006442 515 ----AE--DWR------IDDIKGLLGRCNFKAD---MLDRKVSLLSGGEKARLAFC----KFM-VKPSTLLVLDEPTNHL 574 (645)
Q Consensus 515 ----~~--~~~------~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPt~~L 574 (645)
.. ... ...+...|..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|+|++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 00 000 1123556666654211 11355677898988888877 555 434444 899999
Q ss_pred CHHHHHHHHHHHHh
Q 006442 575 DIPSKEMLEEAISE 588 (645)
Q Consensus 575 D~~s~~~l~~~l~~ 588 (645)
|......+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999998888765
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.32 E-value=4.1e-07 Score=87.72 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 268 vaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
...|++++.+|+++++| ||++|...++.+.+.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 35689999999999999 99999999888877653
No 313
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.31 E-value=3.2e-07 Score=100.87 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 006442 262 SGWQMRMSLGKILLQDPDLLLLDEP----------TNHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (645)
Q Consensus 262 GGqkqRvaLAraL~~~p~iLLLDEP----------ts~LD~~~~~~l~~~L~-------~~g~tvIivsHd~~~l~ 320 (645)
|++++|..+++|....|.||++||+ +++.|......+..+|. ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 44667666555555442 24678889999987664
No 314
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=5e-07 Score=95.59 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
=+++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998876655543
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.30 E-value=4.6e-07 Score=86.16 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=34.5
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
+++++.+.+| +++|+||||||||||+++|.+++.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999998877655
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.28 E-value=4.8e-08 Score=94.86 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=30.6
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCC
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~ 159 (645)
.++.++|++++|+|+||||||||+++|+|.+ |.+.+++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccc
Confidence 3667899999999999999999999999976 77777653
No 317
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.26 E-value=1.9e-07 Score=90.66 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEcC
Q 006442 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (645)
Q Consensus 270 LAr-aL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l~~~~d~i~~l~~ 331 (645)
.|+ +++.+|++++|||+|+++|.++.+.+.+.|.+...- +.++|.. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 456 788899999999999999999888887665421111 2345621 56899887753
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.24 E-value=6.7e-08 Score=112.80 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=56.7
Q ss_pred ccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCC-CCCHHHHHHHHHHHHhc-C--ceEEE-EecCHHHHHhhCCEE
Q 006442 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN-HLDIPSKEMLEEAISEY-K--GTVIT-VSHDRYFVKQIVNRV 610 (645)
Q Consensus 538 ~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~s~~~l~~~l~~~-~--~tvi~-vsHd~~~i~~~~d~v 610 (645)
+..+.-+|+|+.+|..+++.++.+++++|+|||.. +||.+....+.+.+... . .+|++ .||+.+.+.++++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999996 99988765555544432 2 36666 599988888877643
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.23 E-value=5.1e-08 Score=94.69 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=43.1
Q ss_pred EeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE--EEc
Q 006442 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKA 157 (645)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I--~~~ 157 (645)
+|+++.++.....+.+++..++|++++|+|+||||||||+++|++.+. ..|.+ .++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 466777777777888888889999999999999999999999999887 67876 554
No 320
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.23 E-value=9.8e-07 Score=93.67 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHhhc
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC 530 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~~~ 530 (645)
-+++|+|++|+|||||++.|+|... ..|.............+... .. . +..+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~---~~---------------~---------~~l~ 219 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDG---YF---------------R---------YQII 219 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEET---TE---------------E---------EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEec---Cc---------------e---------EEEE
Confidence 3799999999999999999998752 11110000000000000000 00 0 0111
Q ss_pred CCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHH
Q 006442 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD-EPTNHLDIPSKEMLEEAISE-Y-KGTVITVS--HDRY 601 (645)
Q Consensus 531 ~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPt~~LD~~s~~~l~~~l~~-~-~~tvi~vs--Hd~~ 601 (645)
+. +...+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +..+|+|. ||+.
T Consensus 220 Dt-~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 220 DT-PGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EC-TTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred eC-CCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11 11224566779999998876 55556777889999 99999999987766666654 3 56888888 8874
No 321
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.22 E-value=5.4e-07 Score=105.15 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.1
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHH-c--cCCCeEEE-EecCHHHHHhhcCe
Q 006442 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTK 325 (645)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts-~LD~~~~~~l~~~L-~--~~g~tvIi-vsHd~~~l~~~~d~ 325 (645)
+..+.-+|+|+.+|..++++++.+++++|+|||.. +||......+...+ . ....+|++ +||+.+.+..+.+.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34467889999999999999999999999999997 99977654444333 2 23456666 49998888777663
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=4.5e-08 Score=95.05 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=45.5
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE--EECceecc
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNVL 489 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i--~~~g~~~~ 489 (645)
+|++..++.....+..++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355556665566777788889999999999999999999999999987 67877 78776543
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.20 E-value=3.6e-07 Score=87.62 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCc
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~ 151 (645)
|++++|+||||||||||+++|+|++++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 57899999999999999999999997433
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.20 E-value=5.6e-07 Score=87.39 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcCeEEEEcC
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~-~g~tvIivsHd~~~l--~~~~d~i~~l~~ 331 (645)
.+.|+.+|..+++.++.+|+.+..+ .+.++|..+..+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888654333 345567767777666643 356788888987665 567999998853
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.20 E-value=6.8e-07 Score=86.50 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=29.9
Q ss_pred EEEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
++|++|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 326
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.17 E-value=5.1e-06 Score=91.09 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 263 GqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
.|.+....+...+.+++++|+......-......++.++|++.++.+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777888888899997777655443333445678888888889999998877654
No 327
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.15 E-value=1.1e-05 Score=85.49 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhh
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQL 322 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~------~g~tvIivsHd~~~l~~~ 322 (645)
.+|.+|++||+... |......|..++.. .+.++|+++|+.++...+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45789999999876 88888888887743 477899999998765544
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.15 E-value=3.8e-07 Score=87.39 Aligned_cols=30 Identities=40% Similarity=0.512 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999975444
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.14 E-value=1.2e-06 Score=84.75 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
++|.+|++++|+|+||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 330
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.07 E-value=1.4e-05 Score=84.92 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHhhchhcCCCccc---ccccCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHc
Q 006442 239 VSKLMPELGFTADD---GDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (645)
Q Consensus 239 i~~ll~~lgl~~~~---~~~~~~~LSGGqkqRvaLA----raL-~~~p~iLLLDEPts~LD~~~~~~l~~~L~ 303 (645)
+.+++..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|....+.|.+.|.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 34555555543111 1223577898999988877 666 444454 8999999999888887664
No 331
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.06 E-value=4.9e-06 Score=87.37 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHH
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~ 190 (645)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++...... ...+.|++=+ ++..+-..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---------g~~Vl~fSlE------ms~~ql~~------- 91 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---------DRGVAVFSLE------MSAEQLAL------- 91 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---------TCEEEEEESS------SCHHHHHH-------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCC------CCHHHHHH-------
Confidence 3455555568999999999999999999999887643321 2345665533 23322111
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHH
Q 006442 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (645)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaL 270 (645)
++..... .++.. ... -..||.++.+|+..
T Consensus 92 -------Rlls~~~------------------------~v~~~-----------------~l~---~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 92 -------RALSDLT------------------------SINMH-----------------DLE---SGRLDDDQWENLAK 120 (338)
T ss_dssp -------HHHHHHH------------------------CCCHH-----------------HHH---HTCCCHHHHHHHHH
T ss_pred -------HHHHHhh------------------------CCCHH-----------------HHh---cCCCCHHHHHHHHH
Confidence 0000000 01100 011 14699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 006442 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (645)
Q Consensus 271 AraL~~~p~iLLLDEPts~LD~~~~~~l~~-~L~~~-g~tvIivsH 314 (645)
|...+.+++++|.|+|... +........ +.++. +..+|+|.|
T Consensus 121 a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999999999999998644 444333333 33445 678888765
No 332
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.05 E-value=1.1e-05 Score=85.52 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.2
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEE
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G--~~~p~~G~I~ 155 (645)
..+|++++++++ .++|||++|||||||++.|+| ..++.+|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 347889999998 899999999999999999999 5677777654
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=6.2e-07 Score=90.42 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=33.9
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEE
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~---G~~~p~~G~I~ 155 (645)
..++++.+ ++|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 33444444 789999999999999999999999 99989999876
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=3.9e-07 Score=91.92 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---cCCCCCeeEEE
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~---g~~~p~~G~i~ 482 (645)
.+|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 335
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.05 E-value=1.2e-06 Score=84.96 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=32.8
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
...++.++|++++|+|+||||||||+++|++.+ |.+.+++.++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 334667889999999999999999999999986 8888887654
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=2.3e-06 Score=82.80 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
No 337
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=1.6e-06 Score=82.53 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p-~~G~I~~ 156 (645)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998874 4555543
No 338
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=2.5e-06 Score=81.23 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=29.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC-CeeEEE
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVL 482 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p-~~G~i~ 482 (645)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999999874 455553
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.94 E-value=1.4e-06 Score=91.11 Aligned_cols=45 Identities=31% Similarity=0.304 Sum_probs=40.9
Q ss_pred eeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999999999999999999999999999888888764
No 340
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=2.1e-05 Score=83.41 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred cCc--EEEEEcCCCCcHHHHHHHHHcCCCCCe--eEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHH
Q 006442 449 RGE--KTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (645)
Q Consensus 449 ~Ge--~v~i~G~NGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~ 524 (645)
.+. .+.|+||+|+|||||++.+++.+.+.. ..+.++.. ...+..+ .+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----------------~~~~~~~------------~~~ 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----------------IYRNFTA------------IIG 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----------------TCCSHHH------------HHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----------------cCCCHHH------------HHH
Confidence 345 799999999999999999999887653 22222210 0011111 112
Q ss_pred HHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCCCCCCCHHHHHHHHHHHHh------cCceEEEE
Q 006442 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEPTNHLDIPSKEMLEEAISE------YKGTVITV 596 (645)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~------~~~tvi~v 596 (645)
.++..++.. .+....+.++-.... ...+ ..+|.+|++||+... |......|.+++.+ .+.++|++
T Consensus 93 ~l~~~l~~~-----~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 93 EIARSLNIP-----FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHTTCC-----CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHhCcc-----CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 223333321 111123333322221 1111 245889999999876 88888888888754 24589999
Q ss_pred ecCHHHHHhh
Q 006442 597 SHDRYFVKQI 606 (645)
Q Consensus 597 sHd~~~i~~~ 606 (645)
||+.++...+
T Consensus 166 ~~~~~~~~~l 175 (389)
T 1fnn_A 166 GHNDAVLNNL 175 (389)
T ss_dssp ESSTHHHHTS
T ss_pred ECCchHHHHh
Confidence 9998765544
No 341
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.94 E-value=1.8e-05 Score=83.03 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhcccc
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~ 519 (645)
|+.+.--+++|+.+.|.|++|+|||||+..++.......+.+. ||. .+++..+.+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl---------~fS--------lEms~~ql~~R------ 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA---------VFS--------LEMSAEQLALR------ 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE---------EEE--------SSSCHHHHHHH------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE---------EEe--------CCCCHHHHHHH------
Confidence 4444446899999999999999999999888765422222222 221 12333222211
Q ss_pred HHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 520 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+......+++ ..+.+ ..||.++.+|+..|...+.+++++|.|+|...+|
T Consensus 93 ---lls~~~~v~~-~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ---ALSDLTSINM-HDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---HHHHHHCCCH-HHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---HHHHhhCCCH-HHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111111221 11111 3699999999999999999999999999875433
No 342
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=4.2e-06 Score=80.92 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.9
Q ss_pred eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 437 ~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
...++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999865
No 343
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.92 E-value=1.4e-05 Score=84.39 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=32.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EEC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLG 484 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~ 484 (645)
-|++|+++.|+||+|||||||+..++....+..|.+ +++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 378999999999999999999999999876666654 444
No 344
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.91 E-value=1.3e-05 Score=85.09 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=32.8
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCeeEEE
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g--~~~p~~G~i~ 482 (645)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47888888888 999999999999999999999 6677777554
No 345
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.90 E-value=2.4e-07 Score=93.16 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=45.0
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 99 ~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+++++.+.|++..+++++++++++| ++|+||||||||||+++|+|... .|.|.++
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 3455666666667899999999999 99999999999999999999875 5666554
No 346
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.90 E-value=3.8e-08 Score=108.82 Aligned_cols=131 Identities=14% Similarity=0.182 Sum_probs=81.5
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchh----------c
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF----------E 494 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----------~ 494 (645)
.+++++...|....+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...++ .
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 44556655565566789999999999 99999999999999999999875 6788887765432111 1
Q ss_pred cchhhcCCCCCCHHHHHHhhhccc------cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEee
Q 006442 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (645)
Q Consensus 495 q~~~~~l~~~~tv~e~v~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 568 (645)
+... ...+...+.|++....... ...+....+. +....||||++|+..+++|...+|++ ||
T Consensus 117 q~a~-~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~----------~LL~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 117 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTSS-SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH----------HHHHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHH-hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH----------HHHHHhcccccCccEEEEEecCChhh--cC
Confidence 1100 0111222333332111000 0111112221 12234889999999999999999988 89
Q ss_pred CCCC
Q 006442 569 EPTN 572 (645)
Q Consensus 569 EPt~ 572 (645)
||.-
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 9875
No 347
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.89 E-value=7.3e-06 Score=86.62 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 006442 277 DPDLLLLDEPTNHLD---LDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (645)
Q Consensus 277 ~p~iLLLDEPts~LD---~~~~~~l~~~L---~~~g~tvIivsHd~~~l~~ 321 (645)
.|.+|++||+....+ ......+.+.+ ...+.++|++||+......
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 388999999988763 44455565656 3446789999999865443
No 348
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.88 E-value=3.9e-06 Score=96.32 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=34.7
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
-..+.-++++| |+.++++.+..++... ++.+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~~~~~~-~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTERAWTVA-ERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHHHHHHH-HHTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHHHHHHH-HHccCCEEEEecCCchh
Confidence 35677889999 9999999888665544 44688999999998854
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.87 E-value=5.9e-07 Score=93.76 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=41.9
Q ss_pred eeeeeeCCeeceeeeeEEEecCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCeeEEEE
Q 006442 429 NLEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVLL 483 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge------~v~i~G~NGsGKSTLl~~l~g~~~--p~~G~i~~ 483 (645)
.+++.|+++..+++++..|..++ ++||+||||||||||+++|.+++. |.+|.+.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 34455655666777777776666 899999999999999999999987 45666443
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.84 E-value=3.8e-07 Score=95.20 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=47.3
Q ss_pred eEEEEeCCeeeeeeeeEEEECCc------EEEEECCCCccHHHHHHHHHcCCCC--CccEEEEcCCCceEEEEeccCc
Q 006442 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNMKIAFLSQEFE 171 (645)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLl~~l~G~~~p--~~G~I~~~~~~~~i~~v~Q~~~ 171 (645)
.+++.|++...|++++..+.++. ++||+||||||||||+++|.+++.+ +.|. +++++++..
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f 133 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeeccc
Confidence 44555667778888888887776 9999999999999999999998873 4443 556677653
No 351
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.83 E-value=3.7e-05 Score=81.06 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=6e-06 Score=81.84 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=31.4
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~ 158 (645)
+.++|++++|+|+||||||||+++|+|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67777653
No 353
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=1e-05 Score=78.87 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999887
No 354
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=6.7e-05 Score=78.33 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
No 355
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.78 E-value=7.9e-05 Score=77.78 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-+++|+++.|.|++|||||||...++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.77 E-value=3.5e-06 Score=81.74 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=35.4
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
.++|++++|+|+||||||||+++|.+.+++.+|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 46789999999999999999999999998888888765443
No 357
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.77 E-value=2.5e-05 Score=81.26 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHccCCCe--EEEEec
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISH 314 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~t--vIivsH 314 (645)
||.++++|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|+|.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 4444433 333344455777 888877
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.76 E-value=5.5e-06 Score=80.33 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.++|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877777643
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.76 E-value=5.5e-06 Score=82.12 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=32.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
+.++|++++|.|+||||||||+++|+|. .|.|.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 4578999999999999999999999998 6778776654
No 360
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=5.7e-05 Score=81.80 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=32.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECcee
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 487 (645)
++.+++++|+|||||||++..|++.+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 467899999999999999999999988877777664433
No 361
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.74 E-value=9.8e-05 Score=73.22 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766654
No 362
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=9e-06 Score=78.72 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.8
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999999876
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.73 E-value=3.8e-06 Score=89.59 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=38.9
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
.+++++++.+++|++++|+||||||||||+++|+|. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 588999999999999999999999999999999995 4677765
No 364
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.6e-05 Score=77.52 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 365
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.72 E-value=1.4e-05 Score=91.80 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=72.4
Q ss_pred eEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHH
Q 006442 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (645)
Q Consensus 444 sl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~ 521 (645)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +.............. ...-.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~------~~~~~~~-- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTG------VAPLLFR-- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCE------EEEEEET--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEec------ceEEeeC--
Confidence 456788999999999999999999999977654 55666 33322211 000000000000000 0000000
Q ss_pred HHHHHHhhcCCChhhhccCcC-cCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCH
Q 006442 522 DIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDR 600 (645)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~ 600 (645)
+..-..+|.+.. .++ ......+-..+.-++++| |+++++..+...+.. +...+.++|+|.|.+
T Consensus 73 ---------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 73 ---------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKL 136 (665)
T ss_dssp ---------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECG
T ss_pred ---------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCC
Confidence 000112232211 111 122233335678899999 999999988865544 445677889999988
Q ss_pred HHH
Q 006442 601 YFV 603 (645)
Q Consensus 601 ~~i 603 (645)
+..
T Consensus 137 D~~ 139 (665)
T 2dy1_A 137 DKG 139 (665)
T ss_dssp GGC
T ss_pred chh
Confidence 853
No 366
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=1.1e-05 Score=78.03 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34455899999999999999999999999876
No 367
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.69 E-value=5.3e-06 Score=89.73 Aligned_cols=172 Identities=15% Similarity=0.019 Sum_probs=93.4
Q ss_pred eeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecc-cchhccc----hhhcCC-
Q 006442 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-PNYFEQN----QAEALD- 502 (645)
Q Consensus 429 ~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~-~~~~~q~----~~~~l~- 502 (645)
+++..|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.++. +....|- ...+++
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 4555665433 567777 89999999999999999999999999988888887655542 2221110 000110
Q ss_pred -CCCCHHHHHHhhhccccHHHH-HHHHhhc---CCChhhhccCcCc--CCHhHHHHHHHHHHHccCCCeEEeeCCCCCCC
Q 006442 503 -LDKTVLETVAEAAEDWRIDDI-KGLLGRC---NFKADMLDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (645)
Q Consensus 503 -~~~tv~e~v~~~~~~~~~~~~-~~~L~~~---~l~~~~~~~~~~~--LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 575 (645)
+..+ .....++ ...++.+ ++.--..|.++.. -..-..+...+++++..++-+|++| ++.+.|
T Consensus 157 ~~~~~----------~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~ 225 (425)
T 2ffh_A 157 LEVMD----------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQE 225 (425)
T ss_dssp EECCT----------TCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTH
T ss_pred EecCC----------CCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHH
Confidence 0000 0011111 2222221 2211234555431 1234566777788886666788888 455644
Q ss_pred HHHHHHHHHHHHhcCceEEEEecC-H--------HHHHhhCCEEEEEeCCe
Q 006442 576 IPSKEMLEEAISEYKGTVITVSHD-R--------YFVKQIVNRVVEVKGSN 617 (645)
Q Consensus 576 ~~s~~~l~~~l~~~~~tvi~vsHd-~--------~~i~~~~d~v~~l~~g~ 617 (645)
... .+..+-...+.+-|++|+- . +......-.|.++..|.
T Consensus 226 av~--~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge 274 (425)
T 2ffh_A 226 ALS--VARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 274 (425)
T ss_dssp HHH--HHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred HHH--HHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence 432 2222222345566677763 2 12233345677776554
No 368
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=2e-05 Score=76.38 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCcc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (645)
++++|.+++|+|++|||||||++.|++.++ .+.+++|+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~ 57 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFF 57 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCccc
Confidence 567899999999999999999999999764 26677787654
No 369
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.67 E-value=5e-06 Score=86.81 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=42.8
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
+++++|++.+|++++|+|+||+||||++..|++.+.+.+|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3678888899999999999999999999999999998889988866553
No 370
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=2e-05 Score=83.20 Aligned_cols=124 Identities=23% Similarity=0.229 Sum_probs=66.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCe----eEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHH
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~----G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~ 523 (645)
..+..+.|+||+|+|||||++.+++.+.+.. ..+.++... . . +..+ ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----------~--~----~~~~------------~~ 94 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----------I--D----TPYR------------VL 94 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----------H--C----SHHH------------HH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----------C--C----CHHH------------HH
Confidence 4577899999999999999999998765432 222222100 0 0 1110 11
Q ss_pred HHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHH--ccCCCeEEeeCCCCCCC---HHHHHHHHHHHHhc---CceEEE
Q 006442 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM--VKPSTLLVLDEPTNHLD---IPSKEMLEEAISEY---KGTVIT 595 (645)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD---~~s~~~l~~~l~~~---~~tvi~ 595 (645)
..++..++.. .+....+..+.... +..++ ...|.+|++||+....+ ......+.+.+... +.++|+
T Consensus 95 ~~i~~~l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~ 168 (386)
T 2qby_A 95 ADLLESLDVK-----VPFTGLSIAELYRR-LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIG 168 (386)
T ss_dssp HHHTTTTSCC-----CCSSSCCHHHHHHH-HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEE
T ss_pred HHHHHHhCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEE
Confidence 2222323321 01112333332211 11222 23388999999988663 34444555555432 358999
Q ss_pred EecCHHHHHh
Q 006442 596 VSHDRYFVKQ 605 (645)
Q Consensus 596 vsHd~~~i~~ 605 (645)
+||+.++...
T Consensus 169 ~~~~~~~~~~ 178 (386)
T 2qby_A 169 ITNDVKFVDL 178 (386)
T ss_dssp EESCGGGGGG
T ss_pred EECCCChHhh
Confidence 9998865443
No 371
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=1.1e-05 Score=75.83 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999875 7777876554
No 372
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.64 E-value=0.00013 Score=76.77 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=25.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 373
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=0.00027 Score=72.22 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=68.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccccHHHHHHHHh
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~~~~~~~~~L~ 528 (645)
++..+.|.||+|+|||||+++|++..... -+.++. . .+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~------------~-~l--------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA------------A-SL--------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES------------T-TT---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH------------H-HH---------------------------
Confidence 45678999999999999999999865210 011100 0 00
Q ss_pred hcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHH----------HHHHHHHHHhcC-------c
Q 006442 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS----------KEMLEEAISEYK-------G 591 (645)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s----------~~~l~~~l~~~~-------~ 591 (645)
....+ -+++++.+..++.+...+|.+|++||+.+-++... ...+...+.... .
T Consensus 91 --------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 91 --------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp --------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred --------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00000 23567777788888888999999999987765322 223444444432 2
Q ss_pred eEEEEecCHHH----HHhhCCEEEEEe
Q 006442 592 TVITVSHDRYF----VKQIVNRVVEVK 614 (645)
Q Consensus 592 tvi~vsHd~~~----i~~~~d~v~~l~ 614 (645)
.||.+|++.+. +.+-+++++.+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 57778887532 222366665553
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=1e-05 Score=90.57 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee-EEE-ECceec
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G-~i~-~~g~~~ 488 (645)
.+++|++++|+|+||||||||+++|++.+.|.+| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 674 787554
No 375
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=1.9e-05 Score=74.21 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.+|++++|+|+|||||||++++|++.+ |.+.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468999999999999999999999864 656554
No 376
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.58 E-value=1.3e-05 Score=89.69 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.3
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEE-EcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G-~I~-~~~ 158 (645)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 553
No 377
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.57 E-value=6.7e-07 Score=94.39 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=48.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 98 i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
++.++..+.|+...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 44455556666667889999999999999999999999999999999998777666543
No 378
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.55 E-value=1.1e-06 Score=92.58 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=47.5
Q ss_pred EeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
+++.+.|+.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|++.+-+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3444555556678888999999999999999999999999999999877777766543
No 379
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.53 E-value=1.3e-05 Score=84.85 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=46.9
Q ss_pred cEEEEEeeeeeeCC-eecee--------------eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 423 SVVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 423 ~~i~~~~v~~~y~~-~~~l~--------------~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.-+.|+|+++.|+. +..++ |+.+.|.+|++++|+|++|||||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34889999999985 56788 899999999999999999999999999999875
No 380
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=3.2e-05 Score=72.41 Aligned_cols=27 Identities=41% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999764
No 381
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.52 E-value=8.6e-05 Score=80.82 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHccCCCEEE-EeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 006442 269 SLGKILLQDPDLLL-LDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (645)
Q Consensus 269 aLAraL~~~p~iLL-LDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~~~l 319 (645)
..+...+.+++++| +-+.++++.... .++.++|++.++.+|++-...+..
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC-
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCc
Confidence 44555567777444 556888888654 467778877788888887765544
No 382
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.00018 Score=73.53 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 006442 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL 292 (645)
Q Consensus 261 SGGqkqRvaLAraL~~~p~iLLLDEPts~LD~ 292 (645)
+++++.|..++.+...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 45777888888888889999999999887654
No 383
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.50 E-value=0.00022 Score=70.59 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=32.2
Q ss_pred ccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec-CH
Q 006442 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK-----GTVITVSH-DR 600 (645)
Q Consensus 559 ~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~-----~tvi~vsH-d~ 600 (645)
..+++++|+..+.+.++......+..++..++ .++|+++| |+
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 35789999999988998887777777765442 38888998 43
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=5.6e-05 Score=69.73 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=24.7
Q ss_pred eeeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
No 385
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.49 E-value=3.8e-05 Score=71.92 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999999998754
No 386
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.48 E-value=1.2e-05 Score=85.03 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=46.6
Q ss_pred cEEEEeEEEEeCCe-eeee--------------eeeEEEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 97 GVKLENISKSYKGV-TVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 97 ~i~i~nls~~y~~~-~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++|+++.|+.. ..|+ |+++.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 58899999999864 5888 899999999999999999999999999998865
No 387
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.46 E-value=0.00029 Score=76.27 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.45 E-value=0.00012 Score=67.49 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=24.8
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
++.++.+.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566554 899999999999999999863
No 389
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.45 E-value=1.6e-05 Score=82.23 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHH----ccCCC--eEEEEecCHHHHHhhcCeEE
Q 006442 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGYL----GKQDV--PMVIISHDRAFLDQLCTKIV 327 (645)
Q Consensus 260 LSGGqkqRvaLAraL~--~~p~iLLLDEPts~LD~~~-~~~l~~~L----~~~g~--tvIivsHd~~~l~~~~d~i~ 327 (645)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.+ +..+. .+.+++|+-+-+..+++.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 68889998 8999865 44443332 33443 55566777776666666554
No 390
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.43 E-value=0.00017 Score=74.98 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=70.8
Q ss_pred ceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceecccchhccchhhcCCCCCCHHHHHHhhhccc
Q 006442 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518 (645)
Q Consensus 439 ~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~q~~~~~l~~~~tv~e~v~~~~~~~ 518 (645)
-|+.+.--+++|+.+.|.|++|+|||||+..++...-.....+ .||. .+++..+.+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~v---------l~~s--------lE~s~~~l~~R----- 114 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVV---------NLHS--------LEMGKKENIKR----- 114 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEE---------EEEE--------SSSCHHHHHHH-----
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE---------EEEE--------CCCCHHHHHHH-----
Confidence 3555544589999999999999999999888874321110111 1211 12222222111
Q ss_pred cHHHHHHHHhhcCCChhhhccCcCcCCHhHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHH-HHHHHHHhcCce--EEE
Q 006442 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-MLEEAISEYKGT--VIT 595 (645)
Q Consensus 519 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~-~l~~~l~~~~~t--vi~ 595 (645)
+.... .++........-..||.++++|+..|...+.++++++.|+|.. ++.... .+.++.++.+.. +|+
T Consensus 115 ----~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 115 ----LIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp ----HHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred ----HHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHHHHHHHHHHHHHhcCCCCeEEE
Confidence 11111 1221111111101288899999998888888888999888863 333322 233333444444 666
Q ss_pred Eec
Q 006442 596 VSH 598 (645)
Q Consensus 596 vsH 598 (645)
|=|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 391
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.40 E-value=2.2e-06 Score=88.72 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCHhHHHHHHHHHHHc--cCCCeEEeeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhCCEEE
Q 006442 544 LSGGEKARLAFCKFMV--KPSTLLVLDEPTNHLDIPS-KEMLEEAISE----YKG--TVITVSHDRYFVKQIVNRVV 611 (645)
Q Consensus 544 LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~s-~~~l~~~l~~----~~~--tvi~vsHd~~~i~~~~d~v~ 611 (645)
+|+|++ .+++++. ..|.++++ |.+|... +..+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899887 4556665 67999999 8999876 5555555543 332 56667787776766666554
No 392
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=9.7e-05 Score=86.54 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=28.6
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
|.+++|+.+.|+||+|||||||+++|++.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45778999999999999999999999998754
No 393
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.37 E-value=0.001 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 394
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.33 E-value=6.8e-05 Score=81.76 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 006442 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~-~~~~~l~~~L---~~~g~tvIivsHd~ 316 (645)
.+|++|++||+..-.+. .+.+.+...+ .+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4556665554 45688999999973
No 395
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=1.1e-05 Score=90.48 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=49.1
Q ss_pred EEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 425 i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
+-++++...|....++.++++++ +|+.++|+||||||||||+++|++.+.+..|.|.+.+
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 33456666665556778888888 8999999999999999999999999988888876654
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.30 E-value=8.4e-05 Score=73.63 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeeeeEEEE---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q 006442 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (645)
Q Consensus 113 L~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~ 155 (645)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 555666665 8999999999999999999999998877 55554
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.30 E-value=3.2e-05 Score=75.85 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEE
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~---~p~~G~I~~ 156 (645)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865 455565543
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.28 E-value=0.0012 Score=69.66 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887643
No 399
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.0001 Score=71.33 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 445 l~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
-++++|.+++|+|++|||||||.+.|.+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.26 E-value=5.8e-05 Score=71.31 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=30.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECce
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~ 486 (645)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 46899999999999999999999998755 45 5656554
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.22 E-value=9.5e-05 Score=69.79 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
.+|++++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999997755 45
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.21 E-value=0.00011 Score=72.93 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.3
Q ss_pred eeeeeEEEe---cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEE
Q 006442 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (645)
Q Consensus 440 l~~vsl~i~---~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~ 483 (645)
|.++||++. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 555543
No 403
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.00057 Score=70.38 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.+.++..+.|.||+|||||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356678899999999999999999999763
No 404
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.20 E-value=0.00068 Score=73.80 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.3
Q ss_pred cCCCeEEeeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecCH
Q 006442 560 KPSTLLVLDEPTNHLDI-PSKEMLEEAISEY---KGTVITVSHDR 600 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~-~s~~~l~~~l~~~---~~tvi~vsHd~ 600 (645)
.++++|++||+..-.+. .+.+.+...+... +..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 5667777777543 46888899973
No 405
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=0.0001 Score=77.88 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=31.3
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
+++.+++|+|++|||||||++.|+|...+..|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 356789999999999999999999988887776654
No 406
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=4.8e-05 Score=74.58 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCeeEEEE
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~---~p~~G~i~~ 483 (645)
+.+++|+|++||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 455565543
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.14 E-value=0.00021 Score=69.30 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.4
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHH
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~ 144 (645)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 455666665 99999999999999999885
No 408
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.13 E-value=6.3e-05 Score=79.81 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred cEEEEEeeeeeeCCeeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 423 ~~i~~~~v~~~y~~~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
..+.+.|++..|+.+.++++++|+| +|+|++|+|||||++.|++...+..+.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588999999998888899999877 999999999999999999876554443
No 409
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.11 E-value=3.1e-05 Score=82.22 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=38.4
Q ss_pred ccEEEEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccE
Q 006442 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (645)
Q Consensus 96 ~~i~i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~ 153 (645)
..+.+.|++..|+.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3588899999998888899999887 999999999999999999876655544
No 410
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.10 E-value=0.00045 Score=64.65 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
++|.+++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.09 E-value=9.3e-05 Score=72.02 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=36.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCee--EEEECcee
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHN 487 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G--~i~~~g~~ 487 (645)
.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3567899999999999999999999999887788 77777543
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.08 E-value=0.00037 Score=71.51 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
..+.|+||+|+||||++++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887666543
No 413
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.08 E-value=0.0001 Score=77.81 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=31.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECc
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g 485 (645)
++.+++|+|++|||||||++.|+|.+.+.+|+|.+-+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 4568999999999999999999998877777766543
No 414
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.07 E-value=4.4e-05 Score=82.56 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.4
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 345677776543 678887 899999999999999999999999998887777653
No 415
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.05 E-value=0.00014 Score=69.82 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=37.7
Q ss_pred eeeCC-eeceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCeeEEEECce
Q 006442 432 FGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (645)
Q Consensus 432 ~~y~~-~~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (645)
+.|++ ..+++++++..+++ +++|+|++|+|||||++.+.+- ..+..+.+.+++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 34554 35788888887777 6899999999999999999873 2234566666654
No 416
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.04 E-value=0.00049 Score=70.88 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678889999999999999999999875
No 417
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.04 E-value=0.00056 Score=66.32 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=24.1
Q ss_pred eeeeEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 006442 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (645)
Q Consensus 441 ~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~ 471 (645)
.+.++.+.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344566655 489999999999999999885
No 418
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.04 E-value=7.6e-05 Score=83.56 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=46.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455666665556778888888 899999999999999999999999998877777654
No 419
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.02 E-value=0.00054 Score=65.12 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=27.6
Q ss_pred eceeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC--------CCCCeeEEEECce
Q 006442 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEH 486 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~--------~~p~~G~i~~~g~ 486 (645)
.+++++++..+.. +++|+|++|+|||||++.+.+- ..+..+.+.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4678888888777 7899999999999999999982 2233455666654
No 420
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.01 E-value=9.1e-05 Score=73.41 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.3
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHc
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
+.+|+.++++||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35789999999999999998887654
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.96 E-value=0.00013 Score=70.85 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=32.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEEc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G--~I~~~ 157 (645)
.+++|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4567899999999999999999999998877777 55443
No 422
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.92 E-value=0.00068 Score=73.75 Aligned_cols=37 Identities=38% Similarity=0.601 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCeeEEEECceec
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~------------p~~G~i~~~g~~~ 488 (645)
+++|+|+||+|||||++.|+|... +..|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999854 6678899988754
No 423
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.00015 Score=80.10 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=41.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 100 i~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
++++...|.+..+++++++.+++| +.|+||||+|||||+++|+|... .+.|.++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 334444444455788899999999 89999999999999999999864 5555554
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00037 Score=66.19 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.5
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++|++..+|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 425
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.89 E-value=0.0022 Score=69.84 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=77.9
Q ss_pred eeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEcCCCceEEEEeccCccCCCCCHHHHHHHhhHHHHH
Q 006442 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191 (645)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~eni~~~~~~~~~ 191 (645)
-|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++=+ ++..+-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~-------- 246 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL-------- 246 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH--------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH--------
Confidence 46665545899999999999999999999988765432222 235555433 22211110
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhHHHHHHHHHHHHHhCChhcHHHHHHhhchhcCCCcccccccCCCCChHHHHHHHHH
Q 006442 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (645)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLA 271 (645)
++. ....|++.... + -..||..+.+|+.-|
T Consensus 247 ------R~~------------------------------------------~~~~~i~~~~l-~-~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 247 ------RMM------------------------------------------CSEARIDMNRV-R-LGQLTDRDFSRLVDV 276 (444)
T ss_dssp ------HHH------------------------------------------HHHTTCCTTTC-C-GGGCCHHHHHHHHHH
T ss_pred ------HHH------------------------------------------HHHcCCCHHHH-h-CCCCCHHHHHHHHHH
Confidence 000 00112221111 1 146899999999988
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHccCCCeEEEEec
Q 006442 272 KILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (645)
Q Consensus 272 raL~~~p~iLLLDEPts~LD~~~~~-~l~~~L~~~g~tvIivsH 314 (645)
...+.+.++++.|+|. ++..... .+..+.++.+..+|+|.+
T Consensus 277 ~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8888888899988764 4444333 333444456777888765
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.89 E-value=4.6e-05 Score=78.66 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=44.5
Q ss_pred EeeeeeeCCeeceee-eeEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 428 ~~v~~~y~~~~~l~~-vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
+++...|++.. .+ ++++.+ |++++++|+||+||||++..|++.+.+..+++.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34555555432 45 677766 999999999999999999999999988888887755443
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.87 E-value=0.0044 Score=64.19 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.7
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g 472 (645)
-+++|+++.|.|++|||||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 428
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00045 Score=66.46 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G 145 (645)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 429
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.83 E-value=0.0075 Score=63.62 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=25.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 447 IERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 447 i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+++.|.|++|||||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887543
No 430
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.00032 Score=66.56 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q 006442 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (645)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I 154 (645)
..+|.+++|+|++||||||+++.|++.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999876655544
No 431
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.81 E-value=0.002 Score=64.24 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
.++|+|..|+|||||++.|+|....
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 4899999999999999999997543
No 432
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.80 E-value=0.00075 Score=64.12 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.2
Q ss_pred eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 6799999999999999999983
No 433
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.77 E-value=0.00069 Score=63.33 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.5
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999965
No 434
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.76 E-value=0.00023 Score=68.23 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.1
Q ss_pred EEEeCCe-eeeeeeeEEEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
++.|++- ++++++|+..+++ .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4556554 5889999988887 5789999999999999999873
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.76 E-value=0.0015 Score=66.09 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.++.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999999875
No 436
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.76 E-value=0.0016 Score=60.23 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 437
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0039 Score=61.31 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcCeEEEEc
Q 006442 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (645)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd----------~~~l~~~~d~i~~l~ 330 (645)
+++++++||.-. |+.+..+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 87776665544 33459999999994 345556899999875
No 438
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.76 E-value=0.00075 Score=72.09 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCeeEEEECc
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~-----------~~p~~G~i~~~g 485 (645)
.+..|.+++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 678888887765
No 439
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.75 E-value=0.00053 Score=66.22 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346789999999999999999999998764
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.74 E-value=0.00061 Score=65.47 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG 472 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g 472 (645)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 441
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.73 E-value=0.00083 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
..+.|.||+|+|||||+++|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999886543
No 442
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00036 Score=66.22 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=31.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEE-EECc
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i-~~~g 485 (645)
.+|.+++|+|++||||||+.+.|++.+.+..+.+ .+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4788999999999999999999999887666654 3443
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.73 E-value=0.0011 Score=62.35 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
+++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 444
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.69 E-value=0.00073 Score=72.16 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=31.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC-----------CCCCccEEEEcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~~ 158 (645)
.+..|..++|||++|+|||||+++|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457788999999999999999999998 567777776643
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.68 E-value=0.0002 Score=73.86 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=42.2
Q ss_pred EEeEEEEeCCeeeeee-eeEEEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q 006442 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (645)
Q Consensus 100 i~nls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~ 156 (645)
.+++.+.|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 445566665543 46 788766 9999999999999999999999998776666554
No 446
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.66 E-value=0.0012 Score=71.71 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=27.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCccEEEEcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAK 158 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~------------p~~G~I~~~~ 158 (645)
.++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 799999999999999999999854 4556666654
No 447
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.66 E-value=0.00076 Score=63.98 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.6
Q ss_pred eeeEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 442 ~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
++|++..+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999886
No 448
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.00067 Score=65.47 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.2
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
...+|..++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998774
No 449
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.64 E-value=0.00059 Score=70.76 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
+..+.|.||+|+|||||+++|++....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 356889999999999999999987643
No 450
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.63 E-value=0.0038 Score=64.67 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998875
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.00012 Score=76.69 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=40.2
Q ss_pred EeCCeeeeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCCCCcc
Q 006442 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (645)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~p~~G 152 (645)
.|+...+++.++..|+.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35666788888889999998 999999999999999999998766554
No 452
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.002 Score=65.91 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCeeE
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~~p~~G~ 480 (645)
..+.|+||+|+||||+.++|++.+.+..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 468899999999999999999988665553
No 453
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.00012 Score=76.81 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=41.1
Q ss_pred eeeeeCCeeceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCee
Q 006442 430 LEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (645)
Q Consensus 430 v~~~y~~~~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~~p~~G 479 (645)
++..|+...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34455666788888888999988 999999999999999999998755443
No 454
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.50 E-value=0.014 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
-+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999877643
No 455
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0013 Score=61.99 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p 476 (645)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997544
No 456
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0031 Score=63.79 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.4
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.++.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445569999999999999999999865
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.48 E-value=0.0013 Score=61.95 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCc
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p~~ 151 (645)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
No 458
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.48 E-value=0.00094 Score=63.17 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC---eeEEEECce
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEH 486 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~p~---~G~i~~~g~ 486 (645)
-..++|+|++|||||||++.|.+.+++. -|.|..+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3579999999999999999999876543 366666543
No 459
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.43 E-value=0.0071 Score=62.45 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--------------HHHHH-------HHHHHccCCCeEEEEecC
Q 006442 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L--------------DTIEW-------LEGYLGKQDVPMVIISHD 315 (645)
Q Consensus 262 GGqkqRvaLAraL--~--~~p~iLLLDEPts~LD-~--------------~~~~~-------l~~~L~~~g~tvIivsHd 315 (645)
-++++.+.++.++ + .+|+++++|=.++-.- . ...+. |..++++.+++||++-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566666777776 3 3699999998877642 1 01111 223456789999999997
Q ss_pred HH
Q 006442 316 RA 317 (645)
Q Consensus 316 ~~ 317 (645)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 460
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.43 E-value=0.0013 Score=61.97 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.0017 Score=60.99 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 462
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.39 E-value=0.0013 Score=63.19 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 463
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.37 E-value=0.0039 Score=62.16 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+|+|+|++|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998653
No 464
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.36 E-value=0.0037 Score=60.44 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred cCCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHH
Q 006442 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYF 602 (645)
Q Consensus 560 ~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsHd~~~ 602 (645)
.++.+|++||.-. +|......+.+.+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 88888888888887653 478888887653
No 465
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.33 E-value=0.0027 Score=65.79 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+..+.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35688999999999999999998764
No 466
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.32 E-value=0.0029 Score=61.25 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~g~tvIivsHd~~~l 319 (645)
.+|.+|++||.-. +|......|...+.+ .+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 788888888888864 356788888876543
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.30 E-value=0.00042 Score=72.76 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.0
Q ss_pred eeeeeeEEEECCcE--EEEECCCCccHHHHHHHHHcCCC
Q 006442 112 VLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 112 vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888899998 99999999999999999998653
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0019 Score=63.84 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
.+|.+++|+|++||||||+.++|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999974
No 469
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.00096 Score=66.84 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCeeEEEECceec
Q 006442 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (645)
Q Consensus 446 ~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 488 (645)
....+..+.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345677899999999999999999998764 24577776543
No 470
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.25 E-value=0.0017 Score=62.23 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 450 Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0038 Score=65.59 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.8
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999997653
No 472
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.004 Score=65.41 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999998663
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.23 E-value=0.00059 Score=71.63 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.9
Q ss_pred eceeeeeEEEecCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 006442 438 LLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 438 ~~l~~vsl~i~~Ge~--v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367778888889998 9999999999999999999865
No 474
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.002 Score=60.67 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~ 473 (645)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
No 475
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.16 E-value=0.0099 Score=64.59 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.0
Q ss_pred eeeeeEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 440 l~~vsl~i~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
|+.+.--+++|+.+.|.|++|+|||||...++...
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44444458999999999999999999998887654
No 476
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0016 Score=65.11 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=23.7
Q ss_pred eeeEEEECCcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
++++.+++| +.|+||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 334444555 88999999999999999998753
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.14 E-value=0.0026 Score=62.85 Aligned_cols=27 Identities=37% Similarity=0.374 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 448 ~~Ge~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998743
No 478
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.13 E-value=0.0014 Score=61.89 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q 006442 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 124 e~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
.+++|+|++|||||||++.|.+.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999987653
No 479
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.04 E-value=0.0031 Score=58.28 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 480
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.03 E-value=0.021 Score=54.61 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcCeEEEEc
Q 006442 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (645)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~~g~tvIivsHd~----------~~l~~~~d~i~~l~ 330 (645)
.+.+++++||.-- +|++..+.+..+.. .++.||+..+|. ..+..+||.|..+.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 88777666655544 489999998865 55667899998875
No 481
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.00 E-value=0.0026 Score=63.65 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=28.7
Q ss_pred EEECCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
..+++.++.|+|++||||||+.+.|+..+. .|.+.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 345677899999999999999999998764 2344444
No 482
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.96 E-value=0.0039 Score=58.18 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~~ 148 (645)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 483
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.95 E-value=0.0015 Score=64.74 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 484
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.94 E-value=0.0025 Score=63.62 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 006442 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 453 v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
+.|+||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 485
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.93 E-value=0.026 Score=55.35 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhCCEEEEEe
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD----------RYFVKQIVNRVVEVK 614 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd----------~~~i~~~~d~v~~l~ 614 (645)
+++++++||.- .|+.+..+.+.. +...+.+||++-|+ ...+..++|+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999995 477765555544 34457799999994 234445799998864
No 486
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.90 E-value=0.0043 Score=58.38 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q 006442 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 123 Ge~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
|.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.86 E-value=0.021 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 006442 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 451 e~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
.-+.|.||.|+|||||+++|+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999865
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.021 Score=51.66 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCCeEEeeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEec
Q 006442 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598 (645)
Q Consensus 561 ~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~--~tvi~vsH 598 (645)
+..+|++||. ..|+...+..+.+++.... ..+|++|.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 4578999998 5788888888888886543 35555555
No 489
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0047 Score=57.04 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~ 474 (645)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 490
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.80 E-value=0.0017 Score=62.69 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCeeEE
Q 006442 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g~~~p~~G~i 481 (645)
+++|+|++||||||+++.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876543333
No 491
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.80 E-value=0.0053 Score=57.28 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=23.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 006442 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (645)
Q Consensus 449 ~Ge~v~i~G~NGsGKSTLl~~l~g~~~ 475 (645)
.|..+.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.78 E-value=0.015 Score=63.11 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHccCCCe--EEEEec
Q 006442 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (645)
Q Consensus 260 LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l-~~~L~~~g~t--vIivsH 314 (645)
|+..+.+|+.-|...+.+.+++|.|+| ++++...... ..+.++.+.. +|+|.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~--~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKA--GQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCS--SCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 777888888888887888899999987 4666554433 3333445777 888765
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.78 E-value=0.0025 Score=67.99 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=35.3
Q ss_pred CeeeeeeeeEEEE---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEc
Q 006442 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (645)
Q Consensus 109 ~~~vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLl~~l~G~~~p~~G~I~~~ 157 (645)
+.+++-|. +... .+..++|+|++|||||||++.|++...+..+.|.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555554 2222 466789999999999999999998877777777653
No 494
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.76 E-value=0.0047 Score=56.88 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 006442 125 KVGLVGVNGAGKTTQLRII 143 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l 143 (645)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 495
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.73 E-value=0.01 Score=55.84 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-C----CCCCee----EEEECcee
Q 006442 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHN 487 (645)
Q Consensus 452 ~v~i~G~NGsGKSTLl~~l~g-~----~~p~~G----~i~~~g~~ 487 (645)
+++|+|+.|+|||||++.+++ . ..|+.| .+.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 689999999999999976654 3 456655 45555543
No 496
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.71 E-value=0.0048 Score=59.86 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHc
Q 006442 122 KGEKVGLVGVNGAGKTTQLRIIAG 145 (645)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLl~~l~G 145 (645)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 497
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.69 E-value=0.0017 Score=62.67 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~~p 149 (645)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987654
No 498
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.68 E-value=0.0042 Score=58.66 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.9
Q ss_pred ECCcEEEEECCCCccHHHHHHHHHcC
Q 006442 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (645)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl~~l~G~ 146 (645)
+++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
No 499
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.67 E-value=0.0047 Score=61.81 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q 006442 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (645)
Q Consensus 125 ~~~lvG~NGsGKSTLl~~l~G~~ 147 (645)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 500
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.67 E-value=0.022 Score=62.08 Aligned_cols=57 Identities=5% Similarity=-0.059 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHccCCCeEEeeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 006442 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603 (645)
Q Consensus 547 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~s~~~l~~~l~~~~~tvi~vsHd~~~i 603 (645)
.|.+....+...+.+++++|+......-.......+.+.+++.+..+|+|.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 366667777777888888877766554344455678888888778888888876654
Done!