Query 006445
Match_columns 645
No_of_seqs 143 out of 743
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 01:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.6 0.053 1.8E-06 58.7 17.6 101 135-242 130-240 (511)
2 3gia_A Uncharacterized protein 96.1 0.061 2.1E-06 57.1 13.8 79 135-225 125-208 (444)
3 3l1l_A Arginine/agmatine antip 94.9 0.11 3.8E-06 55.0 10.8 82 136-225 126-211 (445)
4 2rdd_B UPF0092 membrane protei 16.3 2E+02 0.0069 20.3 4.4 19 415-433 1-19 (37)
5 2jln_A MHP1; hydantoin, transp 16.2 3.7E+02 0.013 29.1 8.7 33 223-255 225-272 (501)
6 1nrp_R Receptor based peptide 15.3 55 0.0019 21.3 1.0 17 256-272 4-20 (26)
7 3kcp_B Cellulosome anchoring p 15.1 42 0.0014 32.2 0.6 12 183-194 57-68 (187)
8 2bm3_A Type 2 cohesin, scaffol 14.7 44 0.0015 31.7 0.6 12 182-193 44-55 (166)
9 3rhw_A Avermectin-sensitive gl 13.9 3.1E+02 0.011 28.0 7.0 62 312-377 198-263 (347)
10 3bkd_A Transmembrane domain of 12.9 78 0.0027 21.0 1.2 14 9-22 9-22 (26)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.62 E-value=0.053 Score=58.70 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=56.5
Q ss_pred eehhHHHHHHHHHHHhhccccccccchhhH----HHHHHHHHHHHHHHHhhccCccee----eecCHHHHHHHHhhcCch
Q 006445 135 VEALSAIILIVLFLMQKFGTSRVSFLFSPI----MGAWTFSTPLVGIYSIIHHYPGIF----KALSPHYTFHFFWRKGKE 206 (645)
Q Consensus 135 vv~is~~ILv~LF~iQ~~GT~~ig~~FgPi----m~~WF~~l~~~Gi~~I~~~~p~Vl----~AlnP~ya~~f~~~~~~~ 206 (645)
...+++++++++..+.-+|.+..+++..-. +++-++.+.++|+..+...+|.-. ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888999999998887764322 222344455667766554333211 1122211 1123
Q ss_pred hhhhhcceeeeecchhhhhhccCCCC--cchhhhHHHH
Q 006445 207 GWLLLGGTVLCITGSEALFADLGHFN--RSSIQMAFLF 242 (645)
Q Consensus 207 g~~~LG~V~L~iTG~EALyADmGHFg--~~~Ir~aw~~ 242 (645)
+|..+..++.+.+|-|+.-.=-+-.- +|.+..+-..
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 56667788899999998654334333 4556555443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.06 E-value=0.061 Score=57.09 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=45.9
Q ss_pred eehhHHHHHHHHHHHhhccccccccc---hhhHHHHHHHHHHHHHHHHhhccCcceeee-cCHHHHHHHHhhcCchh-hh
Q 006445 135 VEALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPGIFKA-LSPHYTFHFFWRKGKEG-WL 209 (645)
Q Consensus 135 vv~is~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~Gi~~I~~~~p~Vl~A-lnP~ya~~f~~~~~~~g-~~ 209 (645)
...+++++++.+..+..+|.+..+++ +..+.++=++.+.+.|+... +|+-+.. ++|. +..+ +.
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~ 192 (444)
T 3gia_A 125 IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIF 192 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHH
Confidence 34567888888889999998877765 44444444444445555543 3443222 2221 1112 23
Q ss_pred hhcceeeeecchhhhh
Q 006445 210 LLGGTVLCITGSEALF 225 (645)
Q Consensus 210 ~LG~V~L~iTG~EALy 225 (645)
.+...+.+.+|-|+.-
T Consensus 193 ~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 193 ASAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3445677889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.90 E-value=0.11 Score=54.99 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=40.7
Q ss_pred ehhHHHHHHHHHHHhhccccccccc---hhhHHHHHHHHHHHHHHHHhhccCccee-eecCHHHHHHHHhhcCchhhhhh
Q 006445 136 EALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPGIF-KALSPHYTFHFFWRKGKEGWLLL 211 (645)
Q Consensus 136 v~is~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~Gi~~I~~~~p~Vl-~AlnP~ya~~f~~~~~~~g~~~L 211 (645)
..+++++++++..+.-+|.+..+++ +.++.++ .+.++.+..+...+|+.+ ..++|.-.- ....=+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI---PIVGIAVFGWFWFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHHTTSTTCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhChhhcccccCccCCc-----cHHHHHHHH
Confidence 3467777777888888998888776 3333332 222233333333345443 344443110 001113345
Q ss_pred cceeeeecchhhhh
Q 006445 212 GGTVLCITGSEALF 225 (645)
Q Consensus 212 G~V~L~iTG~EALy 225 (645)
...+.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 55677788988653
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.31 E-value=2e+02 Score=20.29 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=9.8
Q ss_pred CcchHHHHHHHHHHhhhhh
Q 006445 415 GGWIPFAISFFLAFIMFGW 433 (645)
Q Consensus 415 GgW~pl~ia~~~~~im~~W 433 (645)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4555555545555555443
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=16.21 E-value=3.7e+02 Score=29.11 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=20.0
Q ss_pred hhhhccCCCCcchhh------------h---HHHHHHHHHHHHhhcch
Q 006445 223 ALFADLGHFNRSSIQ------------M---AFLFTIYPSLVLTYAGQ 255 (645)
Q Consensus 223 ALyADmGHFg~~~Ir------------~---aw~~~V~P~LiLnY~GQ 255 (645)
..-+|...+.|++-. . +++....|..++.-+|=
T Consensus 225 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 225 VSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp TTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 446899998876544 2 33445566666555554
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.26 E-value=55 Score=21.32 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=14.4
Q ss_pred hhHhhcCCCcccccccc
Q 006445 256 TAYLIRHPNDHEDGFYK 272 (645)
Q Consensus 256 gA~ll~~p~~~~npFf~ 272 (645)
-++|++||++.-.||++
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36889999999999986
No 7
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=15.14 E-value=42 Score=32.23 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=7.8
Q ss_pred cCcceeeecCHH
Q 006445 183 HYPGIFKALSPH 194 (645)
Q Consensus 183 ~~p~Vl~AlnP~ 194 (645)
|||+||+|+||.
T Consensus 57 YDP~VLqaV~p~ 68 (187)
T 3kcp_B 57 YDPKVLMAVDPE 68 (187)
T ss_dssp CCTTTEEEECTT
T ss_pred EChhHeeecccC
Confidence 566666666664
No 8
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=14.70 E-value=44 Score=31.66 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=8.0
Q ss_pred ccCcceeeecCH
Q 006445 182 HHYPGIFKALSP 193 (645)
Q Consensus 182 ~~~p~Vl~AlnP 193 (645)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 356777777776
No 9
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=13.89 E-value=3.1e+02 Score=28.03 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCCccceEEecCCCCC----CcccchhhHHHHHHHhheeeEEeCCchhhHhhhhhHHHHHHHHHHHHHHH
Q 006445 312 DYFPRVKVVHTSSNKE----GEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTL 377 (645)
Q Consensus 312 g~~Pr~~i~hTS~~~~----GQIYiP~vNwlL~i~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~ 377 (645)
|-+|++...-+=++.. =|+|+|.+ ++.++..+..+=+.++.+.==++++|..+.+|+++..+
T Consensus 198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 198 GIYSCLRTTIQLKREFSFYLLQLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp CEECEEEEEEEEEECSHHHHHHTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEEEEEEeeEEEEEeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 3445544443333333 37899986 22223333333333333344467787777777777544
No 10
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=12.86 E-value=78 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.895 Sum_probs=12.6
Q ss_pred CcchhhhHHHHHHH
Q 006445 9 DDYLGIYSIMFWTL 22 (645)
Q Consensus 9 ~~v~G~lSlIfWtL 22 (645)
.+++|++-||.|.+
T Consensus 9 a~iiGilHLiLwIl 22 (26)
T 3bkd_A 9 ASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999976
Done!