Query 006445
Match_columns 645
No_of_seqs 143 out of 743
Neff 5.4
Searched_HMMs 13730
Date Tue Mar 26 01:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 22.2 26 0.0019 25.7 2.8 42 244-287 13-54 (57)
2 d2yvxa3 f.57.1.1 (A:276-448) M 20.2 28 0.002 30.9 3.1 119 246-377 12-132 (173)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 17.8 32 0.0023 21.1 1.9 20 416-435 5-24 (27)
4 d2bm3a1 b.2.2.2 (A:5-166) Scaf 12.2 27 0.002 30.8 0.6 12 183-194 41-52 (162)
5 d1jb0i_ f.23.17.1 (I:) Subunit 7.2 15 0.0011 24.8 -2.4 20 329-348 12-31 (38)
6 d1vlfn1 b.3.5.1 (N:196-274) Tr 6.4 2E+02 0.014 21.5 3.6 28 512-540 34-62 (79)
7 d1ppjd2 f.23.11.1 (D:196-241) 5.6 2.8E+02 0.02 19.0 3.7 25 360-384 9-33 (46)
8 d2bnma1 a.35.1.3 (A:6-76) Hydr 4.7 71 0.0052 23.4 -0.1 15 38-52 38-52 (71)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 4.6 5.3E+02 0.038 25.1 6.7 85 362-446 347-434 (509)
10 d2ccaa1 a.93.1.3 (A:26-435) Ca 3.9 98 0.0071 30.9 0.0 15 226-240 68-82 (410)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.16 E-value=26 Score=25.69 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHHHHHhhcchhhHhhcCCCcccccccccccccchHHHHHHHH
Q 006445 244 IYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIAT 287 (645)
Q Consensus 244 V~P~LiLnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilAt 287 (645)
++-++++--++=+.|+.++....+ -|.++|+.++|-.+-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~~~~--~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGAPGA--QLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTC--CCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc--cccccchhhhhheeeeec
Confidence 344455555667778888755333 399999999998775544
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=20.21 E-value=28 Score=30.93 Aligned_cols=119 Identities=10% Similarity=0.075 Sum_probs=69.8
Q ss_pred HHHHHhhcch--hhHhhcCCCcccccccccccccchHHHHHHHHHHHHHHhhhhhhchhhHHHHHHhcCCCccceEEecC
Q 006445 246 PSLVLTYAGQ--TAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTS 323 (645)
Q Consensus 246 P~LiLnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~i~hTS 323 (645)
|-|++|.+|+ .|+++++-|+.-+-+-.+ ..+.|+ ++-.+.-.+||+. +++-|++++|-.-+-.. -
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~L---a~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~~---~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTAL---AFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRDW---R 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTSC---CCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSSH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchhH---H
Confidence 3344444444 567776655443321111 256665 5667888899986 58889999885432111 1
Q ss_pred CCCCCcccchhhHHHHHHHhheeeEEeCCchhhHhhhhhHHHHHHHHHHHHHHH
Q 006445 324 SNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTL 377 (645)
Q Consensus 324 ~~~~GQIYiP~vNwlL~i~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~ 377 (645)
+....++.+-.+|=+.+...+.....+++...++.+=|++...+|.+.+++=..
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345677777776666555555556666666666667777666666665433
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.80 E-value=32 Score=21.12 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhhhhhhH
Q 006445 416 GWIPFAISFFLAFIMFGWFN 435 (645)
Q Consensus 416 gW~pl~ia~~~~~im~~W~~ 435 (645)
||+.+++-+.--.-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777777888854
No 4
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=12.18 E-value=27 Score=30.75 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.3
Q ss_pred cCcceeeecCHH
Q 006445 183 HYPGIFKALSPH 194 (645)
Q Consensus 183 ~~p~Vl~AlnP~ 194 (645)
|||+||+|+||.
T Consensus 41 YDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 41 YDPKVLMAVDPE 52 (162)
T ss_dssp CCTTTEEEECTT
T ss_pred eCHHHhcccccC
Confidence 455555555553
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.25 E-value=15 Score=24.82 Aligned_cols=20 Identities=10% Similarity=0.444 Sum_probs=15.1
Q ss_pred cccchhhHHHHHHHhheeeE
Q 006445 329 EVYSPEVNYILMILCVAVIL 348 (645)
Q Consensus 329 QIYiP~vNwlL~i~~i~vv~ 348 (645)
-|.||.+-|++-+.++.+..
T Consensus 12 wI~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 37899999998887765543
No 6
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=6.39 E-value=2e+02 Score=21.48 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=23.7
Q ss_pred CCCCccEEEEEecCCCEEEEEEEE-eeccc
Q 006445 512 VAPEERIIVRKLGLKGVYGCVIQY-GYADT 540 (645)
Q Consensus 512 V~~~eR~~V~~l~~~g~~rv~~ry-Gf~e~ 540 (645)
.++.=+|.++.+. +|-|.+.+.| ||...
T Consensus 34 Td~~G~F~f~~l~-~G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 34 TNFFGEFKFDALD-NGEYTVEIDADGKSYS 62 (79)
T ss_dssp CCTTSEEEEEEEC-SEEEEEEEEETTEEEE
T ss_pred ECCCCcEEEEecC-CCCEEEEEEEecccce
Confidence 4566889999998 9999999998 88763
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.59 E-value=2.8e+02 Score=19.03 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc
Q 006445 360 FGVVVSLVMLITTILLTLVMIVIWR 384 (645)
Q Consensus 360 YGiaV~~~M~iTT~L~~~v~~~~w~ 384 (645)
-|+-|.+.+.+-|.++.++-+.+|.
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677777777777776666666553
No 8
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=4.74 E-value=71 Score=23.44 Aligned_cols=15 Identities=40% Similarity=0.579 Sum_probs=12.2
Q ss_pred CCCCCChHHHHHHHh
Q 006445 38 DDQGEGGTFALYSLL 52 (645)
Q Consensus 38 dn~GEGGi~AL~sLl 52 (645)
=.|||||-+.|..|=
T Consensus 38 wengeggeltltqlg 52 (71)
T d2bnma1 38 WENGEGGELTLTQLG 52 (71)
T ss_dssp HHTTTCTTCBHHHHH
T ss_pred hhcCCCceeeHHHHH
Confidence 368999999988763
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.56 E-value=5.3e+02 Score=25.09 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHhccChHHHHHHHHHHHHHHHHHHHHhhccccC--CcchHHHHHHHHHHhhhhhhHhHH
Q 006445 362 VVVSLVMLITTILLTLVMI-VIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPE--GGWIPFAISFFLAFIMFGWFNGRQ 438 (645)
Q Consensus 362 iaV~~~M~iTT~L~~~v~~-~~w~~~~~~~~~~~~~f~~ie~~ff~a~l~K~~~--GgW~pl~ia~~~~~im~~W~~G~~ 438 (645)
.|.+....+.-.....+.- ..++.++...+...+.++..-..+++.+.....| .+=+.+.+.+.+-.+...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHh
Q 006445 439 KKIEYELT 446 (645)
Q Consensus 439 ~~~~~~~~ 446 (645)
+..+...+
T Consensus 427 r~~~di~~ 434 (509)
T d2a65a1 427 KAWEEINR 434 (509)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
No 10
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.88 E-value=98 Score=30.93 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=0.0
Q ss_pred hccCCCCcchhhhHH
Q 006445 226 ADLGHFNRSSIQMAF 240 (645)
Q Consensus 226 ADmGHFg~~~Ir~aw 240 (645)
||-||.|.-=||+||
T Consensus 68 aD~G~ygP~lVRlAW 82 (410)
T d2ccaa1 68 ADYGHYGPLFIRMAW 82 (410)
T ss_dssp CGGGCCHHHHHHHHH
T ss_pred ccccccccchhhhhh
Done!