BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006448
         (644 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
           Monophosphate Dehydrogenase
 pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
           Monophosphate Dehydrogenase
 pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
           Monophosphate Dehydrogenase
 pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
           Monophosphate Dehydrogenase
          Length = 490

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 194 GRLIQIKPGVGRFVARNYSPR-QLVTASPGTPLFEI 228
           GR +++KP  G  VA   +P+ +LVTA  GTPL E+
Sbjct: 136 GRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEM 171


>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
           5'-monophosphate Dehydrogenase
          Length = 510

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 194 GRLIQIKPGVGRFVARNYSPR-QLVTASPGTPLFEI 228
           GR +++KP  G  VA   +P+ +LVTA  GTPL E+
Sbjct: 156 GRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEM 191


>pdb|1UMY|A Chain A, Bhmt From Rat Liver
 pdb|1UMY|B Chain B, Bhmt From Rat Liver
 pdb|1UMY|C Chain C, Bhmt From Rat Liver
 pdb|1UMY|D Chain D, Bhmt From Rat Liver
          Length = 407

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 299 VTEEGIKSVINFLKEKIPGLKVKVMNIDITAEVTDDADSL 338
            +E+ +++  N++ EKI G KV     DI  +V D+ D+L
Sbjct: 78  ASEDKLENRGNYVAEKISGQKVNEAACDIARQVADEGDAL 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,055,106
Number of Sequences: 62578
Number of extensions: 675247
Number of successful extensions: 1592
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 15
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)