Query 006448
Match_columns 644
No_of_seqs 123 out of 140
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 01:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e52_A Excinuclease ABC subuni 96.8 0.00088 3E-08 55.1 4.1 38 108-145 21-58 (63)
2 2d7d_A Uvrabc system protein B 92.9 0.065 2.2E-06 59.4 4.2 38 107-144 622-659 (661)
3 1c4o_A DNA nucleotide excision 88.1 0.094 3.2E-06 58.1 0.0 39 107-145 607-645 (664)
4 1e52_A Excinuclease ABC subuni 85.4 0.39 1.3E-05 39.4 2.3 26 148-173 26-51 (63)
5 2ca6_A RAN GTPase-activating p 62.0 4.3 0.00015 40.3 3.0 23 302-326 289-311 (386)
6 3pxg_A Negative regulator of g 57.8 7.3 0.00025 41.1 4.1 40 104-143 394-433 (468)
7 1gp8_A Protein (scaffolding pr 56.9 6.9 0.00024 29.8 2.6 29 113-141 10-38 (40)
8 2d7d_A Uvrabc system protein B 42.5 11 0.00036 41.9 2.4 29 146-174 626-654 (661)
9 3isg_A Penicillinase, beta-lac 36.9 16 0.00053 36.3 2.4 56 151-206 168-232 (251)
10 1xl3_C Protein type A, secreti 36.1 19 0.00066 31.7 2.5 29 101-129 58-86 (92)
11 3g4p_A Beta-lactamase OXA-24; 34.7 10 0.00035 37.4 0.7 50 150-200 165-220 (244)
12 1loi_A Cyclic 3',5'-AMP specif 34.6 6.3 0.00022 27.1 -0.6 8 177-184 15-22 (26)
13 3kf9_B MLCK2, myosin light cha 31.3 27 0.00091 23.7 2.0 16 97-112 2-17 (22)
14 1c4o_A DNA nucleotide excision 30.4 11 0.00037 41.9 0.0 29 145-173 610-638 (664)
15 2ca6_A RAN GTPase-activating p 27.5 14 0.00046 36.7 0.2 8 26-33 33-40 (386)
16 1j0g_A Hypothetical protein 18 25.1 23 0.00077 31.0 1.1 13 2-14 56-68 (92)
17 3hho_A CO-chaperone protein HS 24.8 1.3E+02 0.0044 28.2 6.3 22 149-170 130-151 (174)
18 2fbn_A 70 kDa peptidylprolyl i 21.0 3.3E+02 0.011 23.5 7.8 68 106-173 31-113 (198)
19 1kmi_Z CHEZ, chemotaxis protei 20.2 1.3E+02 0.0045 29.4 5.5 48 95-142 93-156 (214)
No 1
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=96.83 E-value=0.00088 Score=55.06 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.7
Q ss_pred HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006448 108 QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (644)
Q Consensus 108 ~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~ 145 (644)
+...++..|+.+|..|++.++||.||+||+.|.+++..
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999998753
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.87 E-value=0.065 Score=59.39 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=27.5
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006448 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS 144 (644)
Q Consensus 107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~ 144 (644)
++...++..|+.+|.+|++.+|||+||+||+.|.+++.
T Consensus 622 ~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 35566778888888888888889999888888888764
No 3
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.11 E-value=0.094 Score=58.15 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006448 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (644)
Q Consensus 107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~ 145 (644)
++.+..+..|+.+|.+|++.++||.||+||+.|.+++..
T Consensus 607 ~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 607 EDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999888754
No 4
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=85.44 E-value=0.39 Score=39.44 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcc
Q 006448 148 VAEIMAQLKNAIDEERYHDASRLCRY 173 (644)
Q Consensus 148 V~~~~~~Lk~AI~EERY~DAA~lRD~ 173 (644)
+..+..+|+.|.++++|+.||+|||.
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~ 51 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQ 51 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45677899999999999999999996
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=61.96 E-value=4.3 Score=40.27 Aligned_cols=23 Identities=17% Similarity=0.606 Sum_probs=14.0
Q ss_pred hhhHHHHHhhhccCCcceEEEEEec
Q 006448 302 EGIKSVINFLKEKIPGLKVKVMNID 326 (644)
Q Consensus 302 EGi~~v~nflkd~iP~~KvKvm~V~ 326 (644)
+|+..+...++...|.++ .+++.
T Consensus 289 ~g~~~l~~~l~~~l~~L~--~L~l~ 311 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLL--FLELN 311 (386)
T ss_dssp HHHHHHHHHHHHHCTTCC--EEECT
T ss_pred HHHHHHHHHHHhcCCCce--EEEcc
Confidence 466667676666666654 45554
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.83 E-value=7.3 Score=41.11 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=35.8
Q ss_pred hhHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 006448 104 SEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAA 143 (644)
Q Consensus 104 ~~ve~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~ 143 (644)
.+|++.++.+..|+.+++.|+..+||+.|+.|+..+..++
T Consensus 394 ~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~ 433 (468)
T 3pxg_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLR 433 (468)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 3578888899999999999999999999999999888755
No 7
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.87 E-value=6.9 Score=29.82 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 006448 113 ASLLKFQLEDAIEREDFEEAANLKNAIAE 141 (644)
Q Consensus 113 ~~~Lk~QLe~Av~~EDy~eAArLK~ai~~ 141 (644)
.+.|++||..|....||+.+-.|+..|+.
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46789999999999999999999987754
No 8
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=42.50 E-value=11 Score=41.92 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 006448 146 DTVAEIMAQLKNAIDEERYHDASRLCRYT 174 (644)
Q Consensus 146 D~V~~~~~~Lk~AI~EERY~DAA~lRD~a 174 (644)
..+.++..+|++|.+++.|+.||+|||+-
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i 654 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLL 654 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34677888999999999999999999973
No 9
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance; HET: KCX DRW; 1.40A {Escherichia coli} SCOP: e.3.1.1 PDB: 1m6k_A*
Probab=36.86 E-value=16 Score=36.32 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccCCce-------eeeeeec-cCCCCCCcceEEEee-cCCcee
Q 006448 151 IMAQLKNAIDEERYHDASRLCRYTGSGL-------VGWWVGY-SKDSDDPFGRLIQIK-PGVGRF 206 (644)
Q Consensus 151 ~~~~Lk~AI~EERY~DAA~lRD~aGaGL-------vGWW~G~-s~d~~DP~GrIirIs-p~~GRy 206 (644)
.+..+++.+..+.-.+-.+++=+||+|- .|||||+ ..-.+.+|=..+.|. |..|.|
T Consensus 168 ~~~~v~~~m~~~~~~~g~~v~GKTGTa~~~~~~~~~gWFvG~vap~~~p~~~~av~ie~~~~~~~ 232 (251)
T 3isg_A 168 AIENTIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSALTGNLGSNL 232 (251)
T ss_dssp HHHHHHHHTEEEECTTSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEEEEECCTTSC
T ss_pred HHHHHHHhheeeecCCCeEEEEEecCcccCCCCCceEEEEEEEEEcCCCeEEEEEEEEcCCCCcc
Confidence 3444444443332224456888899774 7999999 776666654444443 334444
No 10
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=36.09 E-value=19 Score=31.71 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=26.4
Q ss_pred hhhhhHHHHhhHHHHHHHHHHHHHhhhcH
Q 006448 101 RHFSEIEQAESYASLLKFQLEDAIEREDF 129 (644)
Q Consensus 101 rhF~~ve~~e~~~~~Lk~QLe~Av~~EDy 129 (644)
.-|++.|+..+++.+.+.-|..||++||=
T Consensus 58 ~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede 86 (92)
T 1xl3_C 58 GVFSDEEQRQNLLQMCQNAIDMAIESEEE 86 (92)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999973
No 11
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=34.67 E-value=10 Score=37.39 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcccCCce-----eeeeeeccCCCCCC-cceEEEee
Q 006448 150 EIMAQLKNAIDEERYHDASRLCRYTGSGL-----VGWWVGYSKDSDDP-FGRLIQIK 200 (644)
Q Consensus 150 ~~~~~Lk~AI~EERY~DAA~lRD~aGaGL-----vGWW~G~s~d~~DP-~GrIirIs 200 (644)
+.+..+++++..|+ .+-.+++=+||+|- .|||+|+.+..++| |=-.++|.
T Consensus 165 ~~~~~v~~~m~~~~-~~g~~~~GKTGta~~~~~~~gwfvG~~~~~~~~~~~fa~~i~ 220 (244)
T 3g4p_A 165 ETQEEVKKMLLIKE-VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLE 220 (244)
T ss_dssp HHHHHHHHTTEEEE-ETTEEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHHHHHHHHHhhhc-cCCeeEEeEEeccccCCCCcEEEEEEEEcCCCCEEEEEEEec
Confidence 34455555555444 45567888999984 79999999886666 32334454
No 12
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.65 E-value=6.3 Score=27.14 Aligned_cols=8 Identities=63% Similarity=1.435 Sum_probs=6.1
Q ss_pred ceeeeeee
Q 006448 177 GLVGWWVG 184 (644)
Q Consensus 177 GLvGWW~G 184 (644)
=|||||--
T Consensus 15 wlvgwwdq 22 (26)
T 1loi_A 15 WLVGWWDQ 22 (26)
T ss_dssp TGGGGHHH
T ss_pred hhhhhHHH
Confidence 48999953
No 13
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=31.27 E-value=27 Score=23.72 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=12.8
Q ss_pred hHHHhhhhhHHHHhhH
Q 006448 97 NRWTRHFSEIEQAESY 112 (644)
Q Consensus 97 ~rW~rhF~~ve~~e~~ 112 (644)
-||++||+.|-.+-+|
T Consensus 2 ~~WkK~f~av~Aanrl 17 (22)
T 3kf9_B 2 RRWKKNFIAVSAANRF 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3899999999776655
No 14
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=30.37 E-value=11 Score=41.92 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 006448 145 KDTVAEIMAQLKNAIDEERYHDASRLCRY 173 (644)
Q Consensus 145 ~D~V~~~~~~Lk~AI~EERY~DAA~lRD~ 173 (644)
..-+.++..+|++|.+++.|+.||+|||+
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~ 638 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDE 638 (664)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 34467788899999999999999999997
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=27.49 E-value=14 Score=36.65 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=4.1
Q ss_pred cceeeecc
Q 006448 26 RFQCLDLS 33 (644)
Q Consensus 26 ~~~~~~~~ 33 (644)
..+.|+|+
T Consensus 33 ~L~~L~L~ 40 (386)
T 2ca6_A 33 SVKEIVLS 40 (386)
T ss_dssp CCCEEECT
T ss_pred CccEEECC
Confidence 34555554
No 16
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=25.15 E-value=23 Score=30.99 Aligned_cols=13 Identities=69% Similarity=1.086 Sum_probs=11.7
Q ss_pred eeecCCccccccc
Q 006448 2 IITNNGWGITPAT 14 (644)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (644)
||||.|.||.|+.
T Consensus 56 iiT~dGiGInP~Q 68 (92)
T 1j0g_A 56 IITNDGIGINPAQ 68 (92)
T ss_dssp EECTTSCCCCCSS
T ss_pred EEecCCcccChhh
Confidence 8999999999963
No 17
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=24.78 E-value=1.3e+02 Score=28.15 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh
Q 006448 149 AEIMAQLKNAIDEERYHDASRL 170 (644)
Q Consensus 149 ~~~~~~Lk~AI~EERY~DAA~l 170 (644)
..+...|.+|++.+.|+.|+.+
T Consensus 130 ~~~~~~l~~~~~~~d~~~A~~~ 151 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLAAADQ 151 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHH
Confidence 5566677777777777777653
No 18
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=20.96 E-value=3.3e+02 Score=23.48 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=41.5
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcCCh------H--------HHHHHHH-HHHHhhhhhhhhhhh
Q 006448 106 IEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASKDT------V--------AEIMAQL-KNAIDEERYHDASRL 170 (644)
Q Consensus 106 ve~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~D~------V--------~~~~~~L-k~AI~EERY~DAA~l 170 (644)
+++....+..+...=.......+|++|.++=.....+..+++ . ..+...| ...+...+|++|..+
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344455556666666667789999999987766666555555 0 1222222 223456788888776
Q ss_pred hcc
Q 006448 171 CRY 173 (644)
Q Consensus 171 RD~ 173 (644)
.+.
T Consensus 111 ~~~ 113 (198)
T 2fbn_A 111 ASK 113 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 19
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=20.22 E-value=1.3e+02 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=36.0
Q ss_pred ChhHHHhhhhhHHHHhhHH--------------HHHHHHHHHHHhhhcHHHH--HHHHHHHHHH
Q 006448 95 DWNRWTRHFSEIEQAESYA--------------SLLKFQLEDAIEREDFEEA--ANLKNAIAEA 142 (644)
Q Consensus 95 dW~rW~rhF~~ve~~e~~~--------------~~Lk~QLe~Av~~EDy~eA--ArLK~ai~~~ 142 (644)
.|++|.+.+.++++...++ +.++.+|-+-..+-||+.= -+||+-|..+
T Consensus 93 ~w~~l~~~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv 156 (214)
T 1kmi_Z 93 RWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVI 156 (214)
T ss_dssp HHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4999999988887776665 6778888888888899863 4566655443
Done!