Query 006449
Match_columns 644
No_of_seqs 354 out of 1578
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 23:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 9.8E-45 2.1E-49 382.2 23.1 276 69-347 5-285 (317)
2 KOG1470 Phosphatidylinositol t 100.0 9.9E-39 2.1E-43 333.1 19.8 226 86-338 27-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 8.9E-30 1.9E-34 240.1 9.4 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.9E-27 6.3E-32 222.8 14.9 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.9E-24 8.5E-29 198.3 14.3 144 165-321 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.3 3.2E-13 6.9E-18 127.5 2.9 139 164-325 6-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 4.6E-08 9.9E-13 77.9 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 4.4E-05 9.6E-10 82.7 9.8 127 167-314 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 79.3 2.1 4.6E-05 36.0 3.2 25 556-580 11-35 (75)
10 PRK01026 tetrahydromethanopter 77.4 2.7 5.8E-05 36.2 3.3 25 556-580 11-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 77.2 2.7 5.9E-05 35.4 3.2 25 556-580 8-32 (70)
12 PF10805 DUF2730: Protein of u 73.7 33 0.00071 31.2 9.7 18 497-514 8-25 (106)
13 PF04210 MtrG: Tetrahydrometha 69.9 4.4 9.6E-05 34.2 2.8 25 556-580 8-32 (70)
14 PF14555 UBA_4: UBA-like domai 62.2 24 0.00052 26.6 5.3 36 86-130 2-37 (43)
15 PF02845 CUE: CUE domain; Int 52.4 45 0.00097 24.9 5.4 38 86-131 3-40 (42)
16 smart00546 CUE Domain that may 47.5 50 0.0011 24.7 5.0 38 86-131 4-41 (43)
17 TIGR03752 conj_TIGR03752 integ 47.2 1.1E+02 0.0024 35.1 9.6 74 557-630 56-136 (472)
18 TIGR02132 phaR_Bmeg polyhydrox 43.5 82 0.0018 31.5 7.0 73 558-631 70-153 (189)
19 KOG1838 Alpha/beta hydrolase [ 41.6 1.6E+02 0.0036 33.1 9.8 89 168-281 121-215 (409)
20 TIGR03185 DNA_S_dndD DNA sulfu 41.5 1.1E+02 0.0025 36.2 9.2 58 560-619 391-448 (650)
21 KOG1962 B-cell receptor-associ 39.6 1.4E+02 0.0029 30.9 8.1 72 560-631 114-190 (216)
22 PRK00117 recX recombination re 37.8 39 0.00084 32.3 3.8 99 27-132 53-153 (157)
23 PF08317 Spc7: Spc7 kinetochor 37.7 1.7E+02 0.0038 31.6 9.2 73 561-633 178-250 (325)
24 PF11221 Med21: Subunit 21 of 37.7 2.6E+02 0.0057 26.6 9.5 61 565-633 78-138 (144)
25 PF12718 Tropomyosin_1: Tropom 36.5 1.4E+02 0.003 28.7 7.3 68 559-626 34-107 (143)
26 PF10368 YkyA: Putative cell-w 36.3 1.5E+02 0.0032 30.2 7.8 78 559-636 31-112 (204)
27 COG1340 Uncharacterized archae 34.6 2.9E+02 0.0064 29.8 10.0 65 562-635 109-173 (294)
28 PF05377 FlaC_arch: Flagella a 33.7 1.1E+02 0.0025 24.8 5.2 15 568-582 1-15 (55)
29 PF01496 V_ATPase_I: V-type AT 31.5 1.9E+02 0.004 35.1 9.0 64 570-633 204-271 (759)
30 PHA01750 hypothetical protein 29.9 2.5E+02 0.0054 23.8 6.6 42 592-635 30-71 (75)
31 KOG0612 Rho-associated, coiled 29.2 2E+02 0.0043 36.6 8.5 46 562-615 443-491 (1317)
32 PF05276 SH3BP5: SH3 domain-bi 29.1 3.9E+02 0.0085 28.0 9.7 51 566-618 97-147 (239)
33 PRK10884 SH3 domain-containing 28.7 3.9E+02 0.0086 27.3 9.5 71 566-636 92-169 (206)
34 PRK09039 hypothetical protein; 28.5 94 0.002 34.1 5.3 19 501-519 29-47 (343)
35 TIGR02132 phaR_Bmeg polyhydrox 27.6 1.9E+02 0.0041 29.0 6.6 13 610-622 142-154 (189)
36 PF10212 TTKRSYEDQ: Predicted 27.0 3.2E+02 0.007 31.7 9.3 35 591-625 461-509 (518)
37 PF14712 Snapin_Pallidin: Snap 26.9 1.5E+02 0.0033 25.7 5.4 31 603-633 11-41 (92)
38 PHA02562 46 endonuclease subun 26.7 1.8E+02 0.0039 33.4 7.5 74 559-633 298-371 (562)
39 PF13080 DUF3926: Protein of u 26.6 56 0.0012 25.1 2.1 22 609-633 13-34 (44)
40 PF04740 LXG: LXG domain of WX 26.5 2.6E+02 0.0057 27.6 7.8 114 488-621 46-160 (204)
41 PF05276 SH3BP5: SH3 domain-bi 25.4 3.5E+02 0.0076 28.3 8.6 74 562-635 144-227 (239)
42 PF13234 rRNA_proc-arch: rRNA- 24.7 2.5E+02 0.0053 29.3 7.5 70 562-634 182-263 (268)
43 smart00787 Spc7 Spc7 kinetocho 24.4 3.7E+02 0.0081 29.2 8.9 74 561-634 173-260 (312)
44 PRK14136 recX recombination re 24.4 92 0.002 33.8 4.2 24 108-131 278-301 (309)
45 PF03961 DUF342: Protein of un 24.0 3.5E+02 0.0076 30.6 9.0 55 561-615 342-398 (451)
46 PF10158 LOH1CR12: Tumour supp 23.9 2.6E+02 0.0055 26.6 6.6 63 563-626 52-114 (131)
47 KOG0249 LAR-interacting protei 23.9 4.4E+02 0.0096 31.9 9.7 38 594-631 211-248 (916)
48 KOG3313 Molecular chaperone Pr 23.7 4.4E+02 0.0096 26.5 8.3 61 574-634 22-85 (187)
49 PRK06569 F0F1 ATP synthase sub 23.5 71 0.0015 31.3 2.9 96 493-610 9-106 (155)
50 PRK14137 recX recombination re 23.3 1.7E+02 0.0037 29.5 5.7 26 109-134 156-181 (195)
51 PF07426 Dynactin_p22: Dynacti 23.3 2.3E+02 0.0049 28.2 6.4 17 560-576 5-21 (174)
52 PF11802 CENP-K: Centromere-as 23.2 6.3E+02 0.014 27.0 9.9 38 560-597 52-89 (268)
53 PF14282 FlxA: FlxA-like prote 23.1 4.2E+02 0.0091 24.0 7.7 52 557-609 16-68 (106)
54 PHA00687 hypothetical protein 23.0 1.8E+02 0.0038 22.8 4.3 30 584-613 9-48 (56)
55 PF05335 DUF745: Protein of un 22.9 1.3E+02 0.0029 30.3 4.8 31 588-618 140-177 (188)
56 PLN03214 probable enoyl-CoA hy 22.5 2.7E+02 0.0057 29.4 7.3 21 619-639 251-271 (278)
57 PF15294 Leu_zip: Leucine zipp 21.9 2.3E+02 0.005 30.4 6.5 61 567-638 190-250 (278)
58 PF05529 Bap31: B-cell recepto 21.6 2.6E+02 0.0056 27.7 6.6 62 561-623 119-184 (192)
59 PRK12822 phospho-2-dehydro-3-d 20.9 3E+02 0.0065 30.5 7.3 68 159-237 204-271 (356)
60 PF05377 FlaC_arch: Flagella a 20.6 2.8E+02 0.0061 22.6 5.2 36 600-635 1-36 (55)
61 smart00353 HLH helix loop heli 20.4 2.7E+02 0.0058 21.2 5.1 24 586-609 29-52 (53)
62 COG4479 Uncharacterized protei 20.3 2.4E+02 0.0051 24.2 4.9 51 86-136 19-72 (74)
63 PF06667 PspB: Phage shock pro 20.2 4E+02 0.0086 23.1 6.4 21 559-579 41-61 (75)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=9.8e-45 Score=382.20 Aligned_cols=276 Identities=45% Similarity=0.756 Sum_probs=246.6
Q ss_pred CccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCcccc
Q 006449 69 GRVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIME 146 (644)
Q Consensus 69 ~~v~s~~iedl~d--~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~ 146 (644)
..++.+..+++.+ +.+.+.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||.+++.+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~ 83 (317)
T KOG1471|consen 5 PMLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFE 83 (317)
T ss_pred cccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhh
Confidence 3444555555544 55667777777 99899999975555579999999999999999999999999999999999987
Q ss_pred ccchHHHHHHHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCE
Q 006449 147 DFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSS 226 (644)
Q Consensus 147 d~~~~el~evlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~i 226 (644)
+ .....++.+++|++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|....+++++|+
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~ 161 (317)
T KOG1471|consen 84 D--FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGI 161 (317)
T ss_pred c--cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccee
Confidence 6 23334455688999999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHH
Q 006449 227 TSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLL 306 (644)
Q Consensus 227 tiIIDl~G~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~ 306 (644)
++|+|++|+++.++......+++.++.++|+||||+++++||||+|++|+++|++|||||+++|++||++++.++.+.|.
T Consensus 162 ~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~ 241 (317)
T KOG1471|consen 162 VTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLL 241 (317)
T ss_pred EEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhh
Confidence 99999999999999989999999999999999999999999999999999999999999999999999977777889999
Q ss_pred cccCCCCCCcccCCCCCCC---CCCCCccCCCCCCCCHHHHHHH
Q 006449 307 EIIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMV 347 (644)
Q Consensus 307 e~Id~s~LP~eyGGt~~~~---~~ggcl~~~~gpW~dp~i~k~~ 347 (644)
++|++++||++|||+|.+. ..++|...+.+||.++.+.+..
T Consensus 242 k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (317)
T KOG1471|consen 242 KYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGK 285 (317)
T ss_pred hhCCHhhCccccCCCccccccccCCcCccccccccccccccccc
Confidence 9999999999999999996 3577999999999987776644
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-39 Score=333.07 Aligned_cols=226 Identities=29% Similarity=0.459 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHhhcCccc
Q 006449 86 QAVDAFRQSLIMDEL-LPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGY 164 (644)
Q Consensus 86 ~aL~efRq~L~~~~~-LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~d~~~~el~evlk~~p~~~ 164 (644)
+.+.+.+..+..... .....+| .|+||||||||||+++|.+|+.++|.||+.+++...+ ...++..-+..+.+++
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi 102 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYI 102 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEE
Confidence 445555555521111 1112345 6999999999999999999999999999999987722 3345666678899999
Q ss_pred ccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCChHH
Q 006449 165 HGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNA 244 (644)
Q Consensus 165 ~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~~~ 244 (644)
.|+|++||||+|+++.....+. .+.+++.+++||+||.++..+. .+++++++++|++|+|++|.+
T Consensus 103 ~G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d--- 167 (324)
T KOG1470|consen 103 LGHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPD--- 167 (324)
T ss_pred ecccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCC---
Confidence 9999999999999655444443 4789999999999999987654 467899999999999999988
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCcccCCCCCC
Q 006449 245 RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNC 324 (644)
Q Consensus 245 ~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~LP~eyGGt~~~ 324 (644)
++..+.+++++|+||||||+..+|+|+||+|..+|+++||||||+|++||.|..+. ..|.++||+++||..|||+..+
T Consensus 168 ~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 168 IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccc
Confidence 78999999999999999999999999999999999999999999999999999764 4599999999999999998888
Q ss_pred CCCCCCccCCCCCC
Q 006449 325 ADQGGCLRSDKGPW 338 (644)
Q Consensus 325 ~~~ggcl~~~~gpW 338 (644)
. |.++.||
T Consensus 246 ~------y~~e~~~ 253 (324)
T KOG1470|consen 246 E------YTHEEYW 253 (324)
T ss_pred c------cCCcchh
Confidence 5 5667788
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=8.9e-30 Score=240.13 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.5
Q ss_pred HHHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCC
Q 006449 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (644)
Q Consensus 155 evlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G 234 (644)
++.+.++.+++|+|++||||+|++++++|+.. .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 35788999999999999999999999999985 46889999999999999864221 356899999999999
Q ss_pred CCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCC-CchhHHHcccCCCC
Q 006449 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (644)
Q Consensus 235 ~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~-~~~~~L~e~Id~s~ 313 (644)
+++++++....+.++.+++++|++||++++++||||+|++|+.+|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999964 55578999999999
Q ss_pred CCcccCCC
Q 006449 314 LPEFLGGT 321 (644)
Q Consensus 314 LP~eyGGt 321 (644)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.9e-27 Score=222.77 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=139.1
Q ss_pred HHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCC
Q 006449 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (644)
Q Consensus 156 vlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~ 235 (644)
...+.++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....+++++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 345667776 999999999999999998765 689999999999999988631 235678999999999999
Q ss_pred CcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCC
Q 006449 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (644)
Q Consensus 236 slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~LP 315 (644)
++++++ .+.++.++++++++||++++++||||+|++++++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999866 78899999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred cccCCCCC
Q 006449 316 EFLGGTCN 323 (644)
Q Consensus 316 ~eyGGt~~ 323 (644)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=3.9e-24 Score=198.28 Aligned_cols=144 Identities=40% Similarity=0.623 Sum_probs=128.0
Q ss_pred ccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCChHH
Q 006449 165 HGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNA 244 (644)
Q Consensus 165 ~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~~~ 244 (644)
.|.|++||||+++++++.+.... ...+++++++++.+|..+..... ...++++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccc-hh
Confidence 44699999999999997666543 23489999999999998864322 23799999999999999986 56
Q ss_pred HHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCcccCCC
Q 006449 245 RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (644)
Q Consensus 245 ~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~LP~eyGGt 321 (644)
.+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 88999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.35 E-value=3.2e-13 Score=127.50 Aligned_cols=139 Identities=21% Similarity=0.351 Sum_probs=94.3
Q ss_pred cccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHH-HHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCCh
Q 006449 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGF-EKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (644)
Q Consensus 164 ~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~l-E~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~ 242 (644)
..|+|++||||+++...++ ++. ...+.++.|++..+ +.+ ...+.++|+|+.|++..+.+
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~--------------~~~~f~vVid~~~~~~~~~~- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV--------------VDKPFSVVIDHTGFSRSSEP- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT--------------TTS-EEEEEE-TT--GGG---
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh--------------cCCCEEEEEEcCCCccccCC-
Confidence 3589999999999998777 432 25666666666555 221 13469999999999875543
Q ss_pred HHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhh-hccEEEeCCCchhHHHcccCCCCCCcccCC
Q 006449 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGG 320 (644)
Q Consensus 243 ~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lW-kiVKpFLdpkT-r~KI~flg~~~~~~L~e~Id~s~LP~eyGG 320 (644)
....++.+.+.+...|+..|+++||||+.++++.++ .+.+++++++. ..||.++.+ .++|.++||+++||+.+||
T Consensus 66 -~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~ 142 (149)
T PF13716_consen 66 -SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPG 142 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------H
T ss_pred -chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCC
Confidence 367899999999999999999999999999999999 55567778888 999999865 4889999999999999999
Q ss_pred CCCCC
Q 006449 321 TCNCA 325 (644)
Q Consensus 321 t~~~~ 325 (644)
++...
T Consensus 143 ~~~~d 147 (149)
T PF13716_consen 143 VLQYD 147 (149)
T ss_dssp HH---
T ss_pred EEecC
Confidence 87653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.63 E-value=4.6e-08 Score=77.94 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 85 ~~aL~efRq~L~~~--------~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
+++|++|++.|... +.....++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999873 344556677 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.91 E-value=4.4e-05 Score=82.75 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.3
Q ss_pred CCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCChHHHH
Q 006449 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (644)
Q Consensus 167 ~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~~~~~ 246 (644)
.|++||+|+++...++...+= ..-.++++|.++.++..++. ..+++.=-.|+...+.+ .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 699999999998888776541 12233899999999998863 25555555566655544 356
Q ss_pred HHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 006449 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (644)
Q Consensus 247 llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~L 314 (644)
++....+=+..+|=--++.+|+|.+-|+.+++|+++|||++.|...||+-+ ++.++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 666666656667888999999999999999999999999999999999988 556889998875544
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=79.32 E-value=2.1 Score=35.99 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006449 556 LTEVDLLSSVTKRLSELEEKVDTLQ 580 (644)
Q Consensus 556 ~~~~~~~~~~~~r~~~le~~~~~l~ 580 (644)
++++|++..+.+||.++|+||+...
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5788999999999999999998643
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=77.43 E-value=2.7 Score=36.16 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006449 556 LTEVDLLSSVTKRLSELEEKVDTLQ 580 (644)
Q Consensus 556 ~~~~~~~~~~~~r~~~le~~~~~l~ 580 (644)
.++.+++..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=77.17 E-value=2.7 Score=35.37 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006449 556 LTEVDLLSSVTKRLSELEEKVDTLQ 580 (644)
Q Consensus 556 ~~~~~~~~~~~~r~~~le~~~~~l~ 580 (644)
+++.+++..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998644
No 12
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.72 E-value=33 Score=31.21 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006449 497 IWAAVMAFFMMFVTLFRS 514 (644)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~ 514 (644)
-|..++|++..+++++..
T Consensus 8 ~w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 8 NWGIIWAVFGIAGGIFWL 25 (106)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 355566666666666663
No 13
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=69.85 E-value=4.4 Score=34.18 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006449 556 LTEVDLLSSVTKRLSELEEKVDTLQ 580 (644)
Q Consensus 556 ~~~~~~~~~~~~r~~~le~~~~~l~ 580 (644)
+++.+++..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4688999999999999999998643
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=62.16 E-value=24 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006449 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (644)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~ 130 (644)
+.|.+|..... .++ ..-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------ADE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------SSH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------cCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56788887763 123 4789999999999999998764
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=52.43 E-value=45 Score=24.93 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
+.|+.|++.. |. .+. ..+.+-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566777665 32 234 47889999999999999998864
No 16
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=47.50 E-value=50 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
+.++.|++.. |. .++ ..+.+.|+++++|++.|+..|.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566676664 33 234 37889999999999999988753
No 17
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.16 E-value=1.1e+02 Score=35.05 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=52.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006449 557 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 629 (644)
Q Consensus 557 ~~~~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~--~~~-----~Rv~~le~~l~~tkkaL~~al~kQ~el~ayi 629 (644)
+..|.+..++-++.+|+.+++.|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998876666667776643 111 2344555677777777766666555555555
Q ss_pred H
Q 006449 630 D 630 (644)
Q Consensus 630 e 630 (644)
.
T Consensus 136 ~ 136 (472)
T TIGR03752 136 Q 136 (472)
T ss_pred H
Confidence 3
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=43.52 E-value=82 Score=31.51 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006449 558 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 626 (644)
Q Consensus 558 ~~~~~~~~~~r~~~le~~~~~l~-----------~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 626 (644)
+.+++..+-.|+-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 45566666666666666665543 2222456666663 55556788888777666556653333344444
Q ss_pred HHHHH
Q 006449 627 AYIDR 631 (644)
Q Consensus 627 ayie~ 631 (644)
+.|.+
T Consensus 149 ~~~~~ 153 (189)
T TIGR02132 149 ETIQK 153 (189)
T ss_pred HHHHH
Confidence 44433
No 19
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=41.62 E-value=1.6e+02 Score=33.13 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCChH----
Q 006449 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN---- 243 (644)
Q Consensus 168 Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~~---- 243 (644)
|.+..|++++-+|... .+.+.|+++++....+ ..--++|++-.|++-..+..+
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 3456699999998755 3567899988754332 124577889988765554321
Q ss_pred --HHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH
Q 006449 244 --ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (644)
Q Consensus 244 --~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWki 281 (644)
-.+-++.+++.+...||.+ +++.+-.+.+-.++||-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 2466788888999999999 89999999999999883
No 20
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.54 E-value=1.1e+02 Score=36.18 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006449 560 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEAL 619 (644)
Q Consensus 560 ~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al 619 (644)
..+..+.+++.+||+.++.|..|=...|.+ +-+..-..+++.++.++.+.+..+....
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999988887764 2344444555555555555544444433
No 21
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.58 E-value=1.4e+02 Score=30.92 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006449 560 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 631 (644)
Q Consensus 560 ~~~~~~~~r~~~le~~-----~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~ 631 (644)
+.+...+.+|..+++- -+....++.+=+..+|+=........+-||.||+++++.|+.+-.+=++|.-+.|.
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888861 22222333434444566667777889999999999999998765554555444443
No 22
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=37.75 E-value=39 Score=32.32 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=51.9
Q ss_pred ccCCCChhhh--hhcccchhhHhhhccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 006449 27 SDFENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (644)
Q Consensus 27 ~~~~~se~~~--~~~~~~~~~~~~~~s~~~~~sl~k~~~~r~~~~~v~s~~iedl~d~~E~~aL~efRq~L~~~~~LP~~ 104 (644)
.+...-+|++ ..-+.+. ...-....++++.|.+|| .+..+-.-.++++.+.++..+...+..........+.
T Consensus 53 ~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~~~~~~~- 126 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSR-ARKGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRRPLPDDA- 126 (157)
T ss_pred HHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCCCCCCCH-
Confidence 3334556666 2223332 112234567889999998 5555444444444322232333333332211111100
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 105 HDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 105 ~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
..-.-+.+||..++|+.+.+.+.|...
T Consensus 127 -~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 127 -KEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 112468999999999999888777664
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.67 E-value=1.7e+02 Score=31.60 Aligned_cols=73 Identities=30% Similarity=0.330 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 561 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 561 ~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
.+-.+..|.+.|++++..|...+.++-..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788889999999888887653333445555566666666666555555544444444444444443
No 24
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=37.66 E-value=2.6e+02 Score=26.63 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 565 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 565 ~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
++..-..+|.-++.| +.+...-|+- +.||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555 3344333322 289999999999999999999999999999887653
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.49 E-value=1.4e+02 Score=28.67 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLL 626 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~---p~eke~~l---~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 626 (644)
...+.++-+|++.||..|+.+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|.-+=.+.-
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888777653322 22333322 23567999999999999999999987755543
No 26
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.32 E-value=1.5e+02 Score=30.24 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 634 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~p----~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~ 634 (644)
...+....+.|.+||++...|-.+--+.. .+=..+...|+.-|+.=|..|..-|+||..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988753333 44567788999999999999999999999999988988899987764
Q ss_pred hh
Q 006449 635 AK 636 (644)
Q Consensus 635 ~k 636 (644)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.59 E-value=2.9e+02 Score=29.82 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006449 562 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 635 (644)
Q Consensus 562 ~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 635 (644)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|...+|++....-.| ||.|=|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466678899999998874 4778888766 6778889999999999999988775 556666665543
No 28
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.71 E-value=1.1e+02 Score=24.83 Aligned_cols=15 Identities=27% Similarity=0.621 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhcCC
Q 006449 568 RLSELEEKVDTLQAK 582 (644)
Q Consensus 568 r~~~le~~~~~l~~k 582 (644)
||.|||.++..|.+.
T Consensus 1 Ri~elEn~~~~~~~~ 15 (55)
T PF05377_consen 1 RIDELENELPRIESS 15 (55)
T ss_pred CHHHHHHHHHHHHHH
Confidence 445555555544443
No 29
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=31.50 E-value=1.9e+02 Score=35.07 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 006449 570 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQE 633 (644)
Q Consensus 570 ~~le~~~~~l~~kp~~~p~e---ke~~l~~~~~Rv~~le~~l~~tkkaL~~al~k-Q~el~ayie~~k 633 (644)
.++++-+..+....-.+|.. -++.+++--.|++.+++++..|++.|.+.+.+ .++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788887777754 46899999999999999999999999987665 345555544444
No 30
>PHA01750 hypothetical protein
Probab=29.89 E-value=2.5e+02 Score=23.77 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006449 592 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 635 (644)
Q Consensus 592 ~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 635 (644)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 55777778888888889999988777666544
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=29.17 E-value=2e+02 Score=36.62 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006449 562 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKAL 615 (644)
Q Consensus 562 ~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~---l~~~~~Rv~~le~~l~~tkkaL 615 (644)
+..-++.++.|+++...+. ++|++ |+.++.+.+..|++|..+++||
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l 491 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKAL 491 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666899999999999998 77777 8899999999999999977776
No 32
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.06 E-value=3.9e+02 Score=28.00 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006449 566 TKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEA 618 (644)
Q Consensus 566 ~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~a 618 (644)
=..+.-+|+.+..-+. ..+-+..-||||.|..||-.-|++-......-...
T Consensus 97 Ke~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~ 147 (239)
T PF05276_consen 97 KEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRR 147 (239)
T ss_pred HHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777887766443 57899999999999999999888887776654443
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.71 E-value=3.9e+02 Score=27.25 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006449 566 TKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 636 (644)
Q Consensus 566 ~~r~~~le~~~~~l~~kp~~~-------p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k 636 (644)
-.||.+||.++..|..+..++ -.|..+-+.++=.-+..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444433333 22334444455555666777777666666666555555666666666543
No 34
>PRK09039 hypothetical protein; Validated
Probab=28.47 E-value=94 Score=34.05 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 006449 501 VMAFFMMFVTLFRSVAYRV 519 (644)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~ 519 (644)
|+.||+.||.+.-+|...-
T Consensus 29 ~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 29 VIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777665543
No 35
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.61 E-value=1.9e+02 Score=29.05 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhH
Q 006449 610 ATKKALHEALMRQ 622 (644)
Q Consensus 610 ~tkkaL~~al~kQ 622 (644)
+|.--|.+|+-||
T Consensus 142 ~~~~~~~~~~~~~ 154 (189)
T TIGR02132 142 KTQDELKETIQKQ 154 (189)
T ss_pred cchhHHHHHHHHH
Confidence 4444555554443
No 36
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.98 E-value=3.2e+02 Score=31.73 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHH
Q 006449 591 EELLHAAVCRVDALEAELIATKKA--------------LHEALMRQEDL 625 (644)
Q Consensus 591 e~~l~~~~~Rv~~le~~l~~tkka--------------L~~al~kQ~el 625 (644)
++=|..+-.+|..||.||..|++- |.+.|.+|.|=
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999984 55566666553
No 37
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.95 E-value=1.5e+02 Score=25.66 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 603 ALEAELIATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 603 ~le~~l~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
.++-.|...+..|+++...|.+|++-|++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666554
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.70 E-value=1.8e+02 Score=33.35 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
.+.++.+...+.+|++++..|..+-.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888887775544444444 7778889999999999999888887776666666665554
No 39
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=26.57 E-value=56 Score=25.10 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 609 IATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 609 ~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
+.+|++|+ +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788876 67999999997765
No 40
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.50 E-value=2.6e+02 Score=27.55 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=68.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCccccccccccccccCCCCCCCCcchhhhHH-HHH
Q 006449 488 KTPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVT 566 (644)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 566 (644)
++...+..++-...+-++.++..++..+...+ +.+..-.. .++ +..-+.+..+.+. .+-
T Consensus 46 ka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~---------~vd----------~~~~a~i~e~~L~~el~ 105 (204)
T PF04740_consen 46 KAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQS---------EVD----------SSSNAIIDEDFLESELK 105 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH---------HHc----------ccccccccHHHHHHHHH
Confidence 34455667777888888888888888777666 33322111 111 0011346677776 666
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006449 567 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 621 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~k 621 (644)
+.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+..+|+-|.+++.+
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 106 KKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766554544444554333334455666666666666666655
No 41
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=25.44 E-value=3.5e+02 Score=28.33 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006449 562 LSSVTKRLSELEEKVDTLQ---------AKP-SEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 631 (644)
Q Consensus 562 ~~~~~~r~~~le~~~~~l~---------~kp-~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~ 631 (644)
...++.+...+|.+|..|+ +|| .+|=..=+++|++.-.||..||+++..+|.--.+||-.-+.|-+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566555554 333 234445678999999999999999999999999999999999998866
Q ss_pred HHHh
Q 006449 632 QEEA 635 (644)
Q Consensus 632 ~k~~ 635 (644)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 6544
No 42
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=24.74 E-value=2.5e+02 Score=29.32 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Q 006449 562 LSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYI 629 (644)
Q Consensus 562 ~~~~~~r~~~le~~~~~l~~kp~~~p~ek-----e~~l~~~~~Rv~~le~~l~~tk-------kaL~~al~kQ~el~ayi 629 (644)
-..|++.|+||... ....++.+-+.+ ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 44566666666555 233344444432 3445566666666666665543 34566666666666666
Q ss_pred HHHHH
Q 006449 630 DRQEE 634 (644)
Q Consensus 630 e~~k~ 634 (644)
+..|.
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.44 E-value=3.7e+02 Score=29.18 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHH
Q 006449 561 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRV--------------DALEAELIATKKALHEALMRQEDLL 626 (644)
Q Consensus 561 ~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv--------------~~le~~l~~tkkaL~~al~kQ~el~ 626 (644)
.+-.+.++.+.|+.++..|..-+.+|-.=.-+.|..+-..+ ..++.+|..-+..+.+.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788999999999999888877322222333333444 4455555555555555555556666
Q ss_pred HHHHHHHH
Q 006449 627 AYIDRQEE 634 (644)
Q Consensus 627 ayie~~k~ 634 (644)
+-|...++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 65555444
No 44
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.37 E-value=92 Score=33.78 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 108 ~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
..-+.|||..++|+.+...+.|+.
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357789999999999988877764
No 45
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.98 E-value=3.5e+02 Score=30.57 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006449 561 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 615 (644)
Q Consensus 561 ~~~~~~~r~~~le~~~~~l~~--kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL 615 (644)
.+..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777666655 4567888888888877777777776666554433
No 46
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.90 E-value=2.6e+02 Score=26.63 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006449 563 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 626 (644)
Q Consensus 563 ~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 626 (644)
..+.+|+.+.|..+..+...-.+ =..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~e-rqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVE-RQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999998888765321 1334445667899999999999999999998875444333
No 47
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.86 E-value=4.4e+02 Score=31.91 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006449 594 LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 631 (644)
Q Consensus 594 l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~ 631 (644)
+++|+.++..|++||+.+||-|.++.---+-|-..+|+
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 57999999999999999999998876544444444444
No 48
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=4.4e+02 Score=26.48 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=52.3
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 006449 574 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEE 634 (644)
Q Consensus 574 ~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~---al~kQ~el~ayie~~k~ 634 (644)
|-|++..+||.--+.++..+++...---+-+|.-|.++++.|.+ .+.+=.||+.++.+++.
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~ 85 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKD 85 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcc
Confidence 45778889999999999999999999999999999999999986 45666788888776653
No 49
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.54 E-value=71 Score=31.27 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCccccccccccccccCCCCCCCCcchhhh-HHHHHHHHHH
Q 006449 493 IRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDL-LSSVTKRLSE 571 (644)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~ 571 (644)
...+++..+++|++-++-+-+.+..++++-+........ .+ +.+++. -...-+-.++
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~-------~~---------------L~~Ae~~k~eAe~l~a~ 66 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQ-------DN---------------ITQADTLTIEVEKLNKY 66 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hH---------------HHHHHHHHHHHHHHHHH
Confidence 447788888888887787778777777655543321100 00 001111 1111223344
Q ss_pred HHHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHH
Q 006449 572 LEEKVDTLQAKPSEMPYE-KEELLHAAVCRVDALEAELIA 610 (644)
Q Consensus 572 le~~~~~l~~kp~~~p~e-ke~~l~~~~~Rv~~le~~l~~ 610 (644)
.|+.+..-..+-.+|=.| .+++-.+|..++.++|++|..
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666666 666666667777777777653
No 50
>PRK14137 recX recombination regulator RecX; Provisional
Probab=23.27 E-value=1.7e+02 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006449 109 HMMLRFLKARKFDIDKAKHMWAEMLQ 134 (644)
Q Consensus 109 ~~LLRFLRArKfDvekA~k~L~~~L~ 134 (644)
.-+.+||..++|+.+.+...|.+.+.
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 46889999999999998888887543
No 51
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=23.26 E-value=2.3e+02 Score=28.21 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 006449 560 DLLSSVTKRLSELEEKV 576 (644)
Q Consensus 560 ~~~~~~~~r~~~le~~~ 576 (644)
..+..+=+||++||..|
T Consensus 5 ~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 5 SALDILEKRIEELERRV 21 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677779999999999
No 52
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.20 E-value=6.3e+02 Score=26.99 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 006449 560 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 597 (644)
Q Consensus 560 ~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~ 597 (644)
..++-.+-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 35677889999999999999999999999888877643
No 53
>PF14282 FlxA: FlxA-like protein
Probab=23.11 E-value=4.2e+02 Score=24.01 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 006449 557 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 609 (644)
Q Consensus 557 ~~~~~~~~~~~r~~~le~~~~~l~~kp~~~p~-eke~~l~~~~~Rv~~le~~l~ 609 (644)
.....+..+-+++.+|.+++..|... ..|+. +|.+....=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999995 23444 566555554556777777775
No 54
>PHA00687 hypothetical protein
Probab=22.98 E-value=1.8e+02 Score=22.83 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 006449 584 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 613 (644)
Q Consensus 584 ~~~p~eke~~l~~~----------~~Rv~~le~~l~~tkk 613 (644)
..+|+|--.+|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35788888888765 5788888876555553
No 55
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.91 E-value=1.3e+02 Score=30.27 Aligned_cols=31 Identities=48% Similarity=0.490 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 006449 588 YEKEELLHAAVCRVDALEAEL-------IATKKALHEA 618 (644)
Q Consensus 588 ~eke~~l~~~~~Rv~~le~~l-------~~tkkaL~~a 618 (644)
.||-.||.+|=.||+.|...| +.||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998755 5566655443
No 56
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=22.55 E-value=2.7e+02 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHhhhhh
Q 006449 619 LMRQEDLLAYIDRQEEAKFRK 639 (644)
Q Consensus 619 l~kQ~el~ayie~~k~~k~~~ 639 (644)
=.-|+-+.+++||.++||-+|
T Consensus 251 ~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 251 PSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 345788999999999888543
No 57
>PF15294 Leu_zip: Leucine zipper
Probab=21.93 E-value=2.3e+02 Score=30.35 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006449 567 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 638 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~ 638 (644)
+-|.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ |+-.++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55678888888884 334555777777889999999998 5777888888 6666666666765
No 58
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.64 E-value=2.6e+02 Score=27.66 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006449 561 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 623 (644)
Q Consensus 561 ~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l----~~~~~Rv~~le~~l~~tkkaL~~al~kQ~ 623 (644)
.+.+++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3567888999999999988877654444444332 222233455555555533222 3455553
No 59
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.86 E-value=3e+02 Score=30.52 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=41.6
Q ss_pred hcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCc
Q 006449 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (644)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~sl 237 (644)
..||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+. .... .-.++|||+.-+-
T Consensus 204 ~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l-~~~vmVDcSH~NS 271 (356)
T PRK12822 204 RSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLH----------DEGL-NHRLIIDCSHGNS 271 (356)
T ss_pred cCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHH----------HCCC-CCcEEEECCCccC
Confidence 358888999999999999999988876555432223332223332222222 1122 2558999987653
No 60
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.57 E-value=2.8e+02 Score=22.64 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006449 600 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 635 (644)
Q Consensus 600 Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 635 (644)
||+.||.+|.+.+-.+...=...++|-+-||+.++.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788887777777655555556777777777654
No 61
>smart00353 HLH helix loop helix domain.
Probab=20.43 E-value=2.7e+02 Score=21.20 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 006449 586 MPYEKEELLHAAVCRVDALEAELI 609 (644)
Q Consensus 586 ~p~eke~~l~~~~~Rv~~le~~l~ 609 (644)
-..+|-.+|..|+.=|+.|+.++.
T Consensus 29 ~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 29 KKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 447899999999999999988764
No 62
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=2.4e+02 Score=24.21 Aligned_cols=51 Identities=20% Similarity=0.466 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 006449 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARK---FDIDKAKHMWAEMLQWR 136 (644)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArK---fDvekA~k~L~~~L~WR 136 (644)
....+|-...-++...|...+|++.+-+||.-.. |++..-=..|++|+.|-
T Consensus 19 d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 19 DDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred ChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 3445566666667778988899999999998653 56666667788888774
No 63
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.17 E-value=4e+02 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 006449 559 VDLLSSVTKRLSELEEKVDTL 579 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l 579 (644)
.+.+..+..+.+.||+.|++|
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666655
Done!