Query 006449
Match_columns 644
No_of_seqs 354 out of 1578
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 01:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 2.2E-55 7.6E-60 464.2 19.7 271 71-345 27-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.8E-54 6.3E-59 450.1 21.8 270 72-345 19-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 1.6E-45 5.4E-50 398.9 24.7 247 72-325 1-248 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 1.3E-44 4.5E-49 381.0 18.2 235 74-324 46-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 2.7E-44 9.3E-49 365.7 15.8 228 81-324 5-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.0 1.5E-10 5.2E-15 118.5 6.2 134 159-314 10-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 8.5E-09 2.9E-13 107.4 5.7 130 163-314 33-163 (290)
8 1m7k_A Silencer of death domai 72.0 7 0.00024 34.1 6.0 69 556-631 20-97 (99)
9 3a8y_C BAG family molecular ch 68.5 14 0.00046 34.3 7.4 69 558-633 32-109 (142)
10 2bni_A General control protein 68.3 5.3 0.00018 28.0 3.5 15 567-581 1-15 (34)
11 3c3g_A Alpha/beta peptide with 66.8 6.6 0.00022 27.4 3.7 14 568-581 1-14 (33)
12 2oxj_A Hybrid alpha/beta pepti 65.4 7.2 0.00025 27.4 3.7 15 567-581 1-15 (34)
13 2hy6_A General control protein 64.8 1.8 6E-05 30.4 0.6 15 567-581 1-15 (34)
14 1m62_A BAG-family molecular ch 64.5 20 0.00067 30.6 7.1 66 559-631 10-84 (87)
15 3c3f_A Alpha/beta peptide with 64.3 9.5 0.00032 26.7 4.1 15 567-581 1-15 (34)
16 2wq1_A General control protein 62.9 11 0.00036 26.4 4.1 14 568-581 1-14 (33)
17 1uo4_A General control protein 62.8 7.6 0.00026 27.3 3.4 14 568-581 2-15 (34)
18 3m48_A General control protein 60.4 8.2 0.00028 27.0 3.3 13 568-580 1-13 (33)
19 1nkp_A C-MYC, MYC proto-oncoge 59.2 42 0.0014 28.3 8.3 66 567-632 16-85 (88)
20 2dhy_A CUE domain-containing p 57.4 17 0.00057 29.4 5.2 46 79-132 13-58 (67)
21 1kd8_A GABH AIV, GCN4 acid bas 56.6 14 0.00046 26.3 3.9 14 567-580 1-14 (36)
22 1nkp_B MAX protein, MYC proto- 53.3 60 0.002 26.7 8.3 63 567-629 12-77 (83)
23 1wgl_A TOLL-interacting protei 53.3 15 0.00051 28.9 4.2 40 85-132 10-49 (59)
24 2dam_A ETEA protein; KIAA0887, 50.3 68 0.0023 25.6 7.8 45 79-131 13-57 (67)
25 1kd8_B GABH BLL, GCN4 acid bas 50.1 28 0.00097 24.7 4.6 15 567-581 1-15 (36)
26 1yke_B RNA polymerase II holoe 48.9 1.1E+02 0.0036 28.5 10.0 68 558-633 51-126 (151)
27 1uk5_A BAG-family molecular ch 47.5 63 0.0022 28.6 7.8 68 559-633 29-105 (111)
28 1ykh_B RNA polymerase II holoe 47.5 1.6E+02 0.0055 26.6 11.9 66 559-632 52-125 (132)
29 1ugo_A BCL2-associated athanog 44.3 40 0.0014 29.4 5.8 71 559-632 17-92 (99)
30 2r2v_A GCN4 leucine zipper; co 43.1 34 0.0012 24.0 4.1 16 567-582 1-16 (34)
31 2dal_A Protein KIAA0794; FAS a 40.7 58 0.002 25.5 5.9 41 81-130 12-52 (62)
32 1v92_A NSFL1 cofactor P47; 3-h 38.1 58 0.002 23.4 5.2 38 84-130 5-42 (46)
33 3etw_A Adhesin A; antiparallel 37.5 78 0.0027 28.4 6.8 74 563-636 5-108 (119)
34 2p2u_A HOST-nuclease inhibitor 36.8 2.3E+02 0.0078 26.6 10.5 70 554-636 10-79 (171)
35 3rrk_A V-type ATPase 116 kDa s 35.9 1.3E+02 0.0046 30.8 9.6 65 570-634 199-269 (357)
36 1ic2_A Tropomyosin alpha chain 35.8 1.1E+02 0.0038 25.1 7.2 59 562-624 15-73 (81)
37 3e3v_A Regulatory protein RECX 35.3 25 0.00085 33.3 3.5 78 50-132 85-163 (177)
38 2q9q_C DNA replication complex 35.1 84 0.0029 30.1 7.3 26 585-610 20-45 (196)
39 3htk_A Structural maintenance 34.0 1.5E+02 0.0053 22.5 7.7 45 591-635 11-55 (60)
40 1z96_A DNA-damage, UBA-domain 33.1 62 0.0021 22.4 4.5 21 109-129 19-39 (40)
41 2dah_A Ubiquilin-3; UBA domain 32.4 95 0.0032 23.7 5.7 38 86-132 11-48 (54)
42 1wr1_B Ubiquitin-like protein 28.8 1.1E+02 0.0037 23.9 5.6 38 85-131 18-55 (58)
43 2di0_A Activating signal coint 28.4 1.2E+02 0.0042 24.7 6.0 44 80-131 9-52 (71)
44 2oqq_A Transcription factor HY 28.4 38 0.0013 24.9 2.6 16 565-580 15-30 (42)
45 1vej_A Riken cDNA 4931431F19; 27.3 1E+02 0.0034 25.3 5.4 38 85-131 30-67 (74)
46 1pl5_A Regulatory protein SIR4 26.7 94 0.0032 27.3 5.3 40 599-638 95-134 (142)
47 3e21_A HFAF1, FAS-associated f 26.7 1.4E+02 0.0047 22.2 5.5 37 84-128 5-41 (45)
48 2ke4_A CDC42-interacting prote 25.9 84 0.0029 27.1 4.9 57 561-618 16-88 (98)
49 2dna_A Unnamed protein product 25.5 1.4E+02 0.0046 24.1 5.7 45 78-131 11-57 (67)
50 3dfg_A Xcrecx, regulatory prot 25.4 43 0.0015 31.1 3.2 75 50-130 83-157 (162)
51 1nyh_A Regulatory protein SIR4 24.8 1.1E+02 0.0036 27.6 5.4 40 599-638 119-158 (166)
52 2bwb_A Ubiquitin-like protein 24.5 1.1E+02 0.0038 22.5 4.7 25 106-130 20-44 (46)
53 2ql2_B Neurod1, neurogenic dif 22.7 98 0.0033 24.2 4.3 43 567-609 12-58 (60)
54 1hlo_A Protein (transcription 22.5 1E+02 0.0035 25.1 4.7 47 567-613 22-71 (80)
55 3u1c_A Tropomyosin alpha-1 cha 22.3 1.5E+02 0.005 25.5 5.8 57 564-624 20-76 (101)
56 1otr_A Protein CUE2; protein-p 21.5 1.2E+02 0.0042 22.9 4.4 25 108-132 20-44 (49)
57 3d5l_A Regulatory protein RECX 21.5 43 0.0015 32.8 2.4 73 50-130 128-204 (221)
58 1ufz_A Hypothetical protein BA 21.4 1.4E+02 0.0048 25.1 5.1 41 85-132 35-75 (83)
59 2lw1_A ABC transporter ATP-bin 20.9 2.6E+02 0.0088 23.2 6.9 62 557-626 19-83 (89)
60 4aya_A DNA-binding protein inh 20.9 1.2E+02 0.0042 26.1 4.9 45 566-610 34-82 (97)
61 2l5g_B Putative uncharacterize 20.8 1.5E+02 0.0052 21.8 4.6 35 589-627 3-37 (42)
62 2z5i_I TM, tropomyosin alpha-1 20.3 68 0.0023 23.4 2.6 20 595-614 20-39 (40)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.2e-55 Score=464.21 Aligned_cols=271 Identities=36% Similarity=0.641 Sum_probs=247.2
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 006449 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (644)
Q Consensus 71 v~s~~iedl~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~d~~~ 150 (644)
.++....++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||+++++|.+..++.+
T Consensus 27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 445555555 7888999999999999988 4566777 499999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCC
Q 006449 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (644)
Q Consensus 151 ~------el~evlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve 224 (644)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4445778999999999999999999999999999988888999999999999999998888889888888899
Q ss_pred CEEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhH
Q 006449 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (644)
Q Consensus 225 ~itiIIDl~G~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~ 304 (644)
++++|+|++|+++++++. .+++++.+++++|+|||+||+++||||+|++|+++|+++|+||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999998864 3788999999999999999999999999999999999999999999999999999888889
Q ss_pred HHcccCCCCCCcccCCCCCCCC-CCCCccCCCCCCCCHHHHH
Q 006449 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (644)
Q Consensus 305 L~e~Id~s~LP~eyGGt~~~~~-~ggcl~~~~gpW~dp~i~k 345 (644)
|.++||+++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 7999999999999998876
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.8e-54 Score=450.12 Aligned_cols=270 Identities=36% Similarity=0.672 Sum_probs=244.8
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchH
Q 006449 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (644)
Q Consensus 72 ~s~~iedl~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~d~~~~ 151 (644)
++....++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||+++++||++++++.+..++...
T Consensus 19 ~~~~~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGNL-DSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccC
Confidence 33334444 6777899999999999888 4666777 5999999999999999999999999999999999887766544
Q ss_pred HHHHHHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEe
Q 006449 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (644)
Q Consensus 152 el~evlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIID 231 (644)
+...+.++++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.++++|+...+.+++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred cHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 44556778899999999999999999999999999888889999999999999999998888998887888999999999
Q ss_pred CCCCCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCC
Q 006449 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (644)
Q Consensus 232 l~G~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~ 311 (644)
++|+++++++.. +++++.+++++|+||||||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+
T Consensus 176 ~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 254 (296)
T 1aua_A 176 LKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPA 254 (296)
T ss_dssp CTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCS
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCH
Confidence 999999988743 7899999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCCcccCCCCCCCC-CCCCccCCCCCCCCHHHHH
Q 006449 312 RELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (644)
Q Consensus 312 s~LP~eyGGt~~~~~-~ggcl~~~~gpW~dp~i~k 345 (644)
++||++|||+++|.. +|||+.++.|||++|++++
T Consensus 255 ~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 255 ENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 999999999999986 6899999999999998875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.6e-45 Score=398.94 Aligned_cols=247 Identities=30% Similarity=0.466 Sum_probs=218.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 006449 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (644)
Q Consensus 72 ~s~~iedl~d~~E~~aL~efRq~L~~~~-~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~d~~~ 150 (644)
||+-..++ +++|+++|++||++|.+.. ++| ..|| .+||||||||+||+++|.+||+++++||++++++.+... ..
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CC
Confidence 34444455 7888999999999998874 465 4566 599999999999999999999999999999999888763 33
Q ss_pred HHHHHHHhhcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEE
Q 006449 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (644)
Q Consensus 151 ~el~evlk~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiII 230 (644)
++ .+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.+. .++...+.+++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 33 2456788889999999999999999999999888888999999999999999987643 34444566799999999
Q ss_pred eCCCCCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccC
Q 006449 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (644)
Q Consensus 231 Dl~G~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id 310 (644)
|++|+++++++...+++++.+++++|+||||||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998878899999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCcccCCCCCCC
Q 006449 311 ARELPEFLGGTCNCA 325 (644)
Q Consensus 311 ~s~LP~eyGGt~~~~ 325 (644)
+++||++|||+++++
T Consensus 234 ~~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 234 PDQVPVEYGGTMTDP 248 (403)
T ss_dssp GGGSBGGGTSSBCCT
T ss_pred hhhCchhhCCCcCCC
Confidence 999999999999985
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.3e-44 Score=381.02 Aligned_cols=235 Identities=21% Similarity=0.339 Sum_probs=197.8
Q ss_pred ccccCCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Q 006449 74 VSIEDVRDVEE--LQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140 (644)
Q Consensus 74 ~~iedl~d~~E--~~aL~efRq~L~~~~~LP-----------~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~g 140 (644)
++.+++++.++ +++|++||+||.++|++| .+.|| .+||||||||+||+++|++||.++++||++++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 44566665444 689999999999999874 34566 59999999999999999999999999999998
Q ss_pred CCccccccchHHHHHHHhh-cCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhh
Q 006449 141 VDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAA 219 (644)
Q Consensus 141 id~i~~d~~~~el~evlk~-~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~ 219 (644)
. ++.+..++++..+++. ++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. .
T Consensus 125 ~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~ 190 (316)
T 3hx3_A 125 E--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------E 190 (316)
T ss_dssp G--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------H
T ss_pred h--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------c
Confidence 3 3444555666665554 456789999999999999999999987 47899999999999998752 2
Q ss_pred cCCCCCEEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCC
Q 006449 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN 299 (644)
Q Consensus 220 ~~~ve~itiIIDl~G~slk~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~ 299 (644)
..+++|+++|+|++|++++|+.......++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++
T Consensus 191 ~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC
Confidence 34678999999999999998754446789999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHcccCCCCCCcccCCCCCC
Q 006449 300 KYQSKLLEIIDARELPEFLGGTCNC 324 (644)
Q Consensus 300 ~~~~~L~e~Id~s~LP~eyGGt~~~ 324 (644)
++ +.|.++||+++||++|||++++
T Consensus 271 ~~-~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 271 DL-SGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp CC-HHHHHHSCGGGSBGGGTSSBCC
T ss_pred CH-HHHHhhCCHhhCcHhhCCCCCC
Confidence 66 6899999999999999999986
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.7e-44 Score=365.69 Aligned_cols=228 Identities=24% Similarity=0.326 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHh
Q 006449 81 DVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLS 158 (644)
Q Consensus 81 d~~E~~aL~efRq~L~~~~--~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~L~WRke~gid~i~~d~~~~el~evlk 158 (644)
++.|+++|++||+++.+++ ++|...|| .+|+||||||+||+++|.+||+++++||++++. +..+..+.++....+
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 5677899999999998775 45677777 499999999999999999999999999999962 323333444444444
Q ss_pred hc-CcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCc
Q 006449 159 YY-PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (644)
Q Consensus 159 ~~-p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~sl 237 (644)
.+ +.+++|+|++||||+|+++|++|+++ .+..++++++++.+|.++.. ...++.|+++|+|++|+++
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCCH
Confidence 43 55678999999999999999999987 46788999999999987643 1224679999999999999
Q ss_pred CCCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCcc
Q 006449 238 KNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEF 317 (644)
Q Consensus 238 k~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~LP~e 317 (644)
+|++....+.++.+++++|+||||||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++|| ++||++
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~ 228 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 228 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHh
Confidence 9876555788999999999999999999999999999999999999999999999999999888889999999 999999
Q ss_pred cCCCCCC
Q 006449 318 LGGTCNC 324 (644)
Q Consensus 318 yGGt~~~ 324 (644)
|||++..
T Consensus 229 yGG~~~~ 235 (262)
T 1r5l_A 229 YGGEEFS 235 (262)
T ss_dssp GTCSSCC
T ss_pred hCCCCCC
Confidence 9999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.03 E-value=1.5e-10 Score=118.46 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=109.1
Q ss_pred hcCcccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcC
Q 006449 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (644)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk 238 (644)
....+..|.|++||||+++.+.+++... .+++.++.|++..++..+ -...++|+|+.|++..
T Consensus 10 ~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~ 71 (256)
T 3pg7_A 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPS 71 (256)
T ss_dssp HTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGG
T ss_pred cCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcc
Confidence 3334445899999999999999998765 467777777777666443 2478999999999987
Q ss_pred CCChHHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH-HHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 006449 239 NFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (644)
Q Consensus 239 ~~~~~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lWki-VKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~L 314 (644)
+.+. .+.++.+..++...|...|+++||+|++++|+..|.. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 72 n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 72 NRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 7654 7889999999999999999999999999999977665 456666688899999965 4789999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.71 E-value=8.5e-09 Score=107.36 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=97.4
Q ss_pred ccccCCCCCCcEEEEecCCCCccchhhhchHhHHHHHHHHHHHHHHHhhChhhhhhhcCCCCCEEEEEeCCCCCcCCCCh
Q 006449 163 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (644)
Q Consensus 163 ~~~G~Dk~GRPVli~rlgk~d~~kl~~~~t~~~~ik~~v~~lE~~l~~~~pacsi~~~~~ve~itiIIDl~G~slk~~~~ 242 (644)
+..|.|++||||+++.+++++... .+++.++-|++..++..+ -...++|+|+.|++..+-+.
T Consensus 33 ~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p~ 94 (290)
T 3peg_A 33 YQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRFK 94 (290)
T ss_dssp EEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCCC
T ss_pred EEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCCh
Confidence 334789999999999999998765 467777777666665443 24799999999999876553
Q ss_pred HHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 006449 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (644)
Q Consensus 243 ~~~~llk~ilkilqd~YPErL~rI~IINaP~~f~~lW-kiVKpFLdpkTr~KI~flg~~~~~~L~e~Id~s~L 314 (644)
.++++.+..++...|+..|+++||+|++.+|+..+ ...++|...+...|+.+++.. ..|..+++.+++
T Consensus 95 --~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 95 --TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp --HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred --HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 78899999999999999999999999999998754 566778888889999998653 448888887654
No 8
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=71.95 E-value=7 Score=34.12 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=50.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHH
Q 006449 556 LTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLL 626 (644)
Q Consensus 556 ~~~~~~~~~~~~r~~~le~~~~~l~~kp~~~p~ek-----e~~l~~~~~Rv~~le~~----l~~tkkaL~~al~kQ~el~ 626 (644)
...-..+..+...+.+|+..|+.+..++ .|| +|||..-+=.+|++|.| +-..+|+ ++-+=..++
T Consensus 20 ~~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~---~Vk~iQ~~l 92 (99)
T 1m7k_A 20 PPSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKE---AVCKIQAIL 92 (99)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHH
Confidence 3455668899999999999999999874 566 47888899999999887 5555554 333334556
Q ss_pred HHHHH
Q 006449 627 AYIDR 631 (644)
Q Consensus 627 ayie~ 631 (644)
.+||.
T Consensus 93 ~~LD~ 97 (99)
T 1m7k_A 93 EKLEK 97 (99)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 9
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=68.54 E-value=14 Score=34.27 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHH
Q 006449 558 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAY 628 (644)
Q Consensus 558 ~~~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke-----~~l~~~~~Rv~~le~~----l~~tkkaL~~al~kQ~el~ay 628 (644)
.-..+..+..++++|+.+|+.+..+ +.||| |||..-+=+.|++|.+ +-..+| +++-+=..++++
T Consensus 32 ~~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK---~aVk~VQ~~Le~ 104 (142)
T 3a8y_C 32 SHKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARK---QAVRLAQNILSY 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHH---HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHH---HHHHHHHHHHHH
Confidence 3446888999999999999999776 56774 7899999999999877 445554 445555667888
Q ss_pred HHHHH
Q 006449 629 IDRQE 633 (644)
Q Consensus 629 ie~~k 633 (644)
||.+.
T Consensus 105 LD~k~ 109 (142)
T 3a8y_C 105 LDLKS 109 (142)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88755
No 10
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=68.34 E-value=5.3 Score=28.05 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcC
Q 006449 567 KRLSELEEKVDTLQA 581 (644)
Q Consensus 567 ~r~~~le~~~~~l~~ 581 (644)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKvEeLl~ 15 (34)
T 2bni_A 1 XRMKQIEDKLEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 589999999988754
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=66.80 E-value=6.6 Score=27.39 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcC
Q 006449 568 RLSELEEKVDTLQA 581 (644)
Q Consensus 568 r~~~le~~~~~l~~ 581 (644)
||..||+||++|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999987753
No 12
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.37 E-value=7.2 Score=27.36 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcC
Q 006449 567 KRLSELEEKVDTLQA 581 (644)
Q Consensus 567 ~r~~~le~~~~~l~~ 581 (644)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~kVEeLl~ 15 (34)
T 2oxj_A 1 XRMXQLEXKVXELLX 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 488999999988753
No 13
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=64.78 E-value=1.8 Score=30.40 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcC
Q 006449 567 KRLSELEEKVDTLQA 581 (644)
Q Consensus 567 ~r~~~le~~~~~l~~ 581 (644)
+||..||+||++|-.
T Consensus 1 ~RMnQLEdkVEeLl~ 15 (34)
T 2hy6_A 1 MKVKQLADAVEELAS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 478889999988754
No 14
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=64.51 E-value=20 Score=30.56 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 629 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~p~ek-----e~~l~~~~~Rv~~le~~----l~~tkkaL~~al~kQ~el~ayi 629 (644)
-..+..+...+.+|+..|+....| +.|| +|||..-+=.+|++|.+ +-+.+|+ ++-+=..++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~---~Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKE---AVCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 446788889999999999999987 4566 47899999999999887 5555554 333334566666
Q ss_pred HH
Q 006449 630 DR 631 (644)
Q Consensus 630 e~ 631 (644)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 15
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=64.30 E-value=9.5 Score=26.72 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 006449 567 KRLSELEEKVDTLQA 581 (644)
Q Consensus 567 ~r~~~le~~~~~l~~ 581 (644)
+||..||+||++|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999987743
No 16
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.93 E-value=11 Score=26.38 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcC
Q 006449 568 RLSELEEKVDTLQA 581 (644)
Q Consensus 568 r~~~le~~~~~l~~ 581 (644)
||..||+||++|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987743
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.81 E-value=7.6 Score=27.28 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcC
Q 006449 568 RLSELEEKVDTLQA 581 (644)
Q Consensus 568 r~~~le~~~~~l~~ 581 (644)
||..||+||++|-.
T Consensus 2 RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 2 RMKQIEDKGEEILS 15 (34)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 78899999987743
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.43 E-value=8.2 Score=26.96 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 006449 568 RLSELEEKVDTLQ 580 (644)
Q Consensus 568 r~~~le~~~~~l~ 580 (644)
||..||+||++|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 6788899988774
No 19
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.17 E-value=42 Score=28.30 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006449 567 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 632 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p----~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~ 632 (644)
+|-..|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+..
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888877655554 589999999999999999887665555544455666666655543
No 20
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.42 E-value=17 Score=29.44 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 79 l~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
+...+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 13 ~~~~~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 33344467888888876 2 2344 478899999999999999998765
No 21
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.57 E-value=14 Score=26.31 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhc
Q 006449 567 KRLSELEEKVDTLQ 580 (644)
Q Consensus 567 ~r~~~le~~~~~l~ 580 (644)
+||..||.||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887664
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.34 E-value=60 Score=26.70 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006449 567 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 629 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p---~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayi 629 (644)
+|...|-+.+..|..--+..| ..|-.+|..|+.=|+.|+.+...-+.-+.+.-..+++|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888776543322 489999999999999999887776555544444444444333
No 23
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.25 E-value=15 Score=28.91 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 85 ~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
+++|++|++.. | ..|. ..+-.-|++++.|++.|+.+|.++
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 36677777765 2 2355 488999999999999999998753
No 24
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.26 E-value=68 Score=25.63 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 79 l~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
-....+.+.|.+|...-. ..|...-..||.+.+||++.|+..+-+
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 335667788999998762 124457789999999999999887643
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.10 E-value=28 Score=24.70 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 006449 567 KRLSELEEKVDTLQA 581 (644)
Q Consensus 567 ~r~~~le~~~~~l~~ 581 (644)
+||..||+||++|-.
T Consensus 1 eRMnQLE~KVEeLl~ 15 (36)
T 1kd8_B 1 XKVKQLKAKVEELKS 15 (36)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 578889999987754
No 26
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=48.87 E-value=1.1e+02 Score=28.51 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006449 558 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 629 (644)
Q Consensus 558 ~~~~~~~~~~r~--------~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayi 629 (644)
+.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555555 6677777766 3322344443 58999999999999999999999999999988
Q ss_pred HHHH
Q 006449 630 DRQE 633 (644)
Q Consensus 630 e~~k 633 (644)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 27
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=47.47 E-value=63 Score=28.64 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 629 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke-----~~l~~~~~Rv~~le~~----l~~tkkaL~~al~kQ~el~ayi 629 (644)
-..+..+...+.+|+..|+....++ .||| |||..-+=++|++|.| +-..+|+ ++-+=..++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 5567888889999999999998875 5664 7899999999999887 4444544 444445677777
Q ss_pred HHHH
Q 006449 630 DRQE 633 (644)
Q Consensus 630 e~~k 633 (644)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 28
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.47 E-value=1.6e+02 Score=26.55 Aligned_cols=66 Identities=21% Similarity=0.394 Sum_probs=49.0
Q ss_pred hhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006449 559 VDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYID 630 (644)
Q Consensus 559 ~~~~~~~~~r~--------~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie 630 (644)
.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|+
T Consensus 52 ~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555555 6677777776 3322244443 589999999999999999999999999999887
Q ss_pred HH
Q 006449 631 RQ 632 (644)
Q Consensus 631 ~~ 632 (644)
..
T Consensus 124 ~~ 125 (132)
T 1ykh_B 124 SM 125 (132)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=44.27 E-value=40 Score=29.36 Aligned_cols=71 Identities=18% Similarity=0.406 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHH
Q 006449 559 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-EELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYIDRQ 632 (644)
Q Consensus 559 ~~~~~~~~~r~~~le~~~~~l~~kp~~~p~ek-e~~l~~~~~Rv~~le~~----l~~tkkaL~~al~kQ~el~ayie~~ 632 (644)
-..+..+...+.+|+..|.....++.+--+-+ +|||..-+=++|++|.| +-..+|+ ++-+=..++++||.+
T Consensus 17 i~kI~~I~~ev~~L~~~V~~f~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 17 ISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELEQN 92 (99)
T ss_dssp HHHHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 34678888899999999999988874322211 58888888999999876 3334443 344445566666653
No 30
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=43.09 E-value=34 Score=24.03 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcCC
Q 006449 567 KRLSELEEKVDTLQAK 582 (644)
Q Consensus 567 ~r~~~le~~~~~l~~k 582 (644)
+||..||.||++|-++
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788899999887543
No 31
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.69 E-value=58 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006449 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (644)
Q Consensus 81 d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~ 130 (644)
...+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4556678888886642 12 34778999999999999987763
No 32
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=38.14 E-value=58 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006449 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (644)
Q Consensus 84 E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~ 130 (644)
+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 5 ~~~~i~~F~~iTg--------~~-~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4467888876541 12 35788999999999999987763
No 33
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=37.48 E-value=78 Score=28.41 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchh--------------HHHHHHHHHHHHHHHH----------------HHHHHHH
Q 006449 563 SSVTKRLSELEEKVDTLQAKPSEMPYE--------------KEELLHAAVCRVDALE----------------AELIATK 612 (644)
Q Consensus 563 ~~~~~r~~~le~~~~~l~~kp~~~p~e--------------ke~~l~~~~~Rv~~le----------------~~l~~tk 612 (644)
.+++.+|..||..++.|..+-.++=.+ .++|.+.--.|+..|+ .++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 456667777777777776654444322 2334444444555544 3577889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 006449 613 KALHEALMRQEDLLAYIDRQEEAK 636 (644)
Q Consensus 613 kaL~~al~kQ~el~ayie~~k~~k 636 (644)
|.|.+-+.+|++++.+.|+-+.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877543
No 34
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=36.82 E-value=2.3e+02 Score=26.59 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=50.6
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006449 554 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 633 (644)
Q Consensus 554 ~~~~~~~~~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 633 (644)
+.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.+..+ +..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~~--~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQKS--APLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888999999999999999876 4567888888876554443 3344444556778889998876
Q ss_pred Hhh
Q 006449 634 EAK 636 (644)
Q Consensus 634 ~~k 636 (644)
..-
T Consensus 77 ~el 79 (171)
T 2p2u_A 77 TEM 79 (171)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 35
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.93 E-value=1.3e+02 Score=30.85 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 006449 570 SELEEKVDTLQAKPSEMPY-----EKEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 634 (644)
Q Consensus 570 ~~le~~~~~l~~kp~~~p~-----eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~k-Q~el~ayie~~k~ 634 (644)
+++++-+..+....-.+|. .=.+.|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788888888885 345788888899999999999999999998888 7777777666653
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.79 E-value=1.1e+02 Score=25.08 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006449 562 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 624 (644)
Q Consensus 562 ~~~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~e 624 (644)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||..+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666554332 3456667777788999999999999998888776544
No 37
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=35.33 E-value=25 Score=33.27 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=43.9
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHH-HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006449 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQ-AVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (644)
Q Consensus 50 ~s~~~~~sl~k~~~~r~~~~~v~s~~iedl~d~~E~~-aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~ 128 (644)
...+++.-|+.|| .+..+..-.++++.+.++.+ +...++..+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4556788888888 55544433445543334433 3333333333222111 0111246789999999999988887
Q ss_pred HHHH
Q 006449 129 WAEM 132 (644)
Q Consensus 129 L~~~ 132 (644)
+.+.
T Consensus 160 l~~l 163 (177)
T 3e3v_A 160 IQEL 163 (177)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7653
No 38
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=35.12 E-value=84 Score=30.13 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 006449 585 EMPYEKEELLHAAVCRVDALEAELIA 610 (644)
Q Consensus 585 ~~p~eke~~l~~~~~Rv~~le~~l~~ 610 (644)
++|+=.++++...+.+|..+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665543
No 39
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.96 E-value=1.5e+02 Score=22.47 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006449 591 EELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 635 (644)
Q Consensus 591 e~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 635 (644)
++-+...=.+++.++.++..++..|..+...+..+...|.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444546788899999999999999999999999999888654
No 40
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.15 E-value=62 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 006449 109 HMMLRFLKARKFDIDKAKHMW 129 (644)
Q Consensus 109 ~~LLRFLRArKfDvekA~k~L 129 (644)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 41
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.37 E-value=95 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
..|++|++.= +.|.+.-++-|++.++|+++|+..|-..
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666552 3444456899999999999999887653
No 42
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.81 E-value=1.1e+02 Score=23.86 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 85 ~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
.+.|++|++.= +.|.+..++=|++.++|+++|++.|-.
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566666542 234446789999999999999988754
No 43
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.44 E-value=1.2e+02 Score=24.73 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 80 ~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
..++-...|.++++.+ |. ..+. ++.+.|..++.|+|.++..|-+
T Consensus 9 ~~~~l~s~I~qV~DLf------Pd-LG~g-fi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------PD-LGEG-FILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------CS-SCHH-HHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------cc-CCHH-HHHHHHHHhCCCHHHHHHHHHc
Confidence 3556677888888776 33 3453 7999999999999999988864
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.40 E-value=38 Score=24.90 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 006449 565 VTKRLSELEEKVDTLQ 580 (644)
Q Consensus 565 ~~~r~~~le~~~~~l~ 580 (644)
+=.|.+|||++|.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 45
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.26 E-value=1e+02 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 85 ~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
.+.|++|++.= +.|.+..++=|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566666553 234456789999999999999988753
No 46
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=26.70 E-value=94 Score=27.32 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006449 599 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 638 (644)
Q Consensus 599 ~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~ 638 (644)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766766665555544
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=26.68 E-value=1.4e+02 Score=22.17 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006449 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (644)
Q Consensus 84 E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~ 128 (644)
..+.|.+|...-. .+|...-..||.+++||++.|+..
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3467888887552 345335688999999999999753
No 48
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.93 E-value=84 Score=27.11 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHH--------------HHHHhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006449 561 LLSSVTKRLSELEE--------------KVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 618 (644)
Q Consensus 561 ~~~~~~~r~~~le~--------------~~~~l~~kp~~~--p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~a 618 (644)
.-..+.+.|.+|+. +.++....|. | |.--|..|+.+-.+|+.|+++|-+-...|.++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555655544 4455566665 6 77779999999999999999999988888776
No 49
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.51 E-value=1.4e+02 Score=24.13 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=30.8
Q ss_pred CCCCHHH--HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006449 78 DVRDVEE--LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (644)
Q Consensus 78 dl~d~~E--~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~ 131 (644)
+...+++ ..+|++|++.= +.|.+.-++=|++.+.|+++|++.|..
T Consensus 11 ~~~~pe~~y~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3334444 45666666543 244446689999999999999888764
No 50
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.44 E-value=43 Score=31.06 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=42.7
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 006449 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (644)
Q Consensus 50 ~s~~~~~sl~k~~~~r~~~~~v~s~~iedl~d~~E~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L 129 (644)
...++++.|+.|| .+..+..-.++++.+.+...+...++..... ..+.......-+.|||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4457888898888 5555444344544332333333434443321 112111222468899999999999877665
Q ss_pred H
Q 006449 130 A 130 (644)
Q Consensus 130 ~ 130 (644)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 4
No 51
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=24.81 E-value=1.1e+02 Score=27.61 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006449 599 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 638 (644)
Q Consensus 599 ~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~ 638 (644)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777666555554
No 52
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.47 E-value=1.1e+02 Score=22.49 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 006449 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (644)
Q Consensus 106 dD~~~LLRFLRArKfDvekA~k~L~ 130 (644)
.|.+..++=|++.++|+++|+..|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444568999999999999988764
No 53
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=22.69 E-value=98 Score=24.19 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHHHHHHHHHHH
Q 006449 567 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 609 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p~----eke~~l~~~~~Rv~~le~~l~ 609 (644)
+|+.+|-+-++.|...-+.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999887777774 588999999999999987664
No 54
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.48 E-value=1e+02 Score=25.12 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006449 567 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 613 (644)
Q Consensus 567 ~r~~~le~~~~~l~~kp~~~p---~eke~~l~~~~~Rv~~le~~l~~tkk 613 (644)
+|...|=+.+..|..--+.+| ..|-.+|..|+.=|..|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655433332 47999999999999999988765443
No 55
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.28 E-value=1.5e+02 Score=25.48 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006449 564 SVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 624 (644)
Q Consensus 564 ~~~~r~~~le~~~~~l~~kp~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~e 624 (644)
..+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||..+...|.++..+-++
T Consensus 20 ~a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666554432 2366666666788999999999998888888666544
No 56
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=21.55 E-value=1.2e+02 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 108 YHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 108 ~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
...+-+-|+++++|++.|+++|-+.
T Consensus 20 ~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 20 KSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3478899999999999999998765
No 57
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.51 E-value=43 Score=32.75 Aligned_cols=73 Identities=7% Similarity=-0.007 Sum_probs=42.1
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHH-HHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHcCCCHHHH
Q 006449 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQ-AVDAFRQSLIMDELLPERHDD---YHMMLRFLKARKFDIDKA 125 (644)
Q Consensus 50 ~s~~~~~sl~k~~~~r~~~~~v~s~~iedl~d~~E~~-aL~efRq~L~~~~~LP~~~dD---~~~LLRFLRArKfDvekA 125 (644)
...+++..|+.|| .+..+..-.++++.+.++.+ +....+..+..... .++ ..-+.|||..++|+.+.+
T Consensus 128 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~----~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 128 GPGIIRQHLRQKG----IGESDIDDALTQFTPEVQAELAKKLALKLFRRYRN----QPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccC----CChHHHHHHHHHHHHhCCCCHHHH
Confidence 4556778888888 55444333445553333333 33333444332211 222 357899999999999988
Q ss_pred HHHHH
Q 006449 126 KHMWA 130 (644)
Q Consensus 126 ~k~L~ 130 (644)
...+.
T Consensus 200 ~~vl~ 204 (221)
T 3d5l_A 200 EMIKD 204 (221)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66553
No 58
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=21.38 E-value=1.4e+02 Score=25.14 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006449 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (644)
Q Consensus 85 ~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArKfDvekA~k~L~~~ 132 (644)
...|+++|..|.. ...| ..|.+-.-+.+||+++|+..+-+-
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3568889988842 3345 378888899999999999887653
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.86 E-value=2.6e+02 Score=23.17 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=38.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCC---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006449 557 TEVDLLSSVTKRLSELEEKVDTLQAK---PSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 626 (644)
Q Consensus 557 ~~~~~~~~~~~r~~~le~~~~~l~~k---p~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 626 (644)
-+.-.+..+=.+|..||.++..|..+ |.-.-. ...++..|=++|...+..|.++..|=+||-
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~--------d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQ--------PHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888999999998888754 221001 123455555566666666677777766653
No 60
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=20.85 E-value=1.2e+02 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHHHHHHHHHHHH
Q 006449 566 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 610 (644)
Q Consensus 566 ~~r~~~le~~~~~l~~kp~~~p~e----ke~~l~~~~~Rv~~le~~l~~ 610 (644)
..||..|-+-++.|...-+.+|++ |=|.|..|+.-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999888888877 789999999999999877754
No 61
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.75 E-value=1.5e+02 Score=21.77 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006449 589 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 627 (644)
Q Consensus 589 eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~a 627 (644)
.|||||+. +.|| -+|.++|++=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kV---drEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRV---DREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777763 4444 47889998888888888887755
No 62
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=20.30 E-value=68 Score=23.39 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006449 595 HAAVCRVDALEAELIATKKA 614 (644)
Q Consensus 595 ~~~~~Rv~~le~~l~~tkka 614 (644)
.+|++|.+.+|+++..++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999988873
Done!