BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006454
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 570 bits (1468), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/569 (49%), Positives = 379/569 (66%), Gaps = 18/569 (3%)
Query: 73 SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
SGV G +++Y + S+ GY L R+PH NK LAF+ +ER + GL
Sbjct: 9 SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
LPP+ SQE+QV +++ N +Y+ +MDLQ+RN+KLFY++L ++E+ +PIVYT
Sbjct: 55 LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
PTVG ACQ+Y ++ +P+G+FI++ D+G + VL WPE I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
C+GMGIPVGKL+LYTA GG+ P CLPV +DVGT NE+LL D YIGLRQ+R G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLI 372
L EFM AV YG LIQ FEDFAN NAF LL KY + FNDDIQGTASV +AGL+
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQ-FEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLL 293
Query: 373 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 432
+A++ L+DQ LF GAGEA GIA LI + + K+ +P E+ KKIWLVDSKGLIV
Sbjct: 294 AALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIV 352
Query: 433 SSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEK 492
R SL K+ +AHEHE +K L V IKPT LIG + G F++++++ MA+ NE+
Sbjct: 353 KGR-ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNER 411
Query: 493 PIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPG 551
PIIF+LSNPTS++EC+AE+ Y ++GRAIFASGSPFDP + PGQ NN+Y+FPG
Sbjct: 412 PIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPG 471
Query: 552 LGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAK 611
+ LG++ G ++ D++ QV+ ++ ++G LYPP IR +S IA ++
Sbjct: 472 VALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKD 531
Query: 612 AYELGLATRLPPPKDLVKYAESCMYSPAY 640
AY+ AT P P++ + S MYS Y
Sbjct: 532 AYQEKTATVYPEPQNKEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/541 (51%), Positives = 358/541 (66%), Gaps = 4/541 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
GY +LRDPH NKG AF+ +ER + GLLPP + Q+ QV +L N + L +Y+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ LQ+RN+KLFYK+L ++E PIVYTPTVG ACQ YG + RP+G+FI++ D+G +
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
L++WPE I+ IVVTDGERILGLGDLGC+G GIPVGKL+LYTA GG++P CLPV +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+NE LL D YIGLR KR GQ Y +LL EF AV YG LIQ FEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQ-FEDFANANAF 241
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
LL KY + FNDDIQGTASV +AGL++A++ L+D LF GAGEA GIA LI
Sbjct: 242 RLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLI 301
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 463
K+ + EE K+IW VDSKGLIV R SL K+ +AHEH K L D V I
Sbjct: 302 VXAXQKE-GVSKEEAIKRIWXVDSKGLIVKGR-ASLTPEKEHFAHEHCEXKNLEDIVKDI 359
Query: 464 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 523
KPT+LIG + G FT+++++ A+ N++PIIF+LSNPTS++ECTAE+ Y +++GR IFA
Sbjct: 360 KPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFA 419
Query: 524 SGSPFDPFEY-GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQ 582
SGSPFDP PGQ NN+Y+FPG+ LG+I G + DD+ +V++
Sbjct: 420 SGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSE 479
Query: 583 ENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRT 642
EN +G LYPP I+++S IA +A +AY A+ P P+DL + S +YS Y
Sbjct: 480 ENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNC 539
Query: 643 Y 643
+
Sbjct: 540 F 540
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/540 (49%), Positives = 366/540 (67%), Gaps = 5/540 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L+ +P NKG+AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+M +QERN+KLFY++L D++E L+PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +GMGIPVGKL LYTA GIRP CLPV ID
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG LIQ FEDF NHNAF
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQ-FEDFGNHNAF 244
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 245 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLI 304
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVN 461
+ + + + +E +KKIW+ D GL+V R + +++P+ H E + + DAVN
Sbjct: 305 VMSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 363
Query: 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 521
+KP+ +IG +G GR FT +V+ AMAS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +
Sbjct: 364 ILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 423
Query: 522 FASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQV 580
FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+
Sbjct: 424 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 483
Query: 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640
T E +G LYPP NI+++S +IA +V Y +A P P+D KY + + Y
Sbjct: 484 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPEDKAKYVKEQTWRSEY 543
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 355/540 (65%), Gaps = 5/540 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQ FEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQ-FEDFGNHNAF 263
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 264 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLI 323
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVN 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 324 VXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 382
Query: 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 522 FASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQV 580
FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+
Sbjct: 443 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 502
Query: 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640
T E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 503 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 355/540 (65%), Gaps = 5/540 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQ FEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQ-FEDFGNHNAF 263
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 264 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLI 323
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVN 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 324 VXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 382
Query: 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 522 FASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQV 580
FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+
Sbjct: 443 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 502
Query: 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640
T E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 503 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 355/540 (65%), Gaps = 5/540 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQ FEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQ-FEDFGNHNAF 243
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 244 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLI 303
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVN 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 304 VXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 362
Query: 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +
Sbjct: 363 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 422
Query: 522 FASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQV 580
FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+
Sbjct: 423 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 482
Query: 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640
T E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 483 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 542
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 355/540 (65%), Gaps = 5/540 (0%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF 343
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG LIQ FEDF NHNAF
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQ-FEDFGNHNAF 241
Query: 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELI 403
L KY + FNDDIQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 242 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLI 301
Query: 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVN 461
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 302 VXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 360
Query: 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAI 521
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +
Sbjct: 361 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 420
Query: 522 FASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQV 580
FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+
Sbjct: 421 FASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL 480
Query: 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640
T E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 481 TDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 540
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/550 (47%), Positives = 368/550 (66%), Gaps = 11/550 (2%)
Query: 94 VTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQ 153
VTP S LL++P NKG+ FS ER L GLLPP ++QE Q +++ +R+
Sbjct: 33 VTPKKRSA----ELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE 88
Query: 154 YQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVF 213
L +Y+ + LQ+RN+KLFY+++ D+V+EL+PIVYTPTVG ACQ +G IY +P+G++
Sbjct: 89 QPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLY 148
Query: 214 ISLKDKG--KVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGG 271
I++ D K+ ++L NW E++++ IVVTDGERILGLGDLG +G+GIPVGKL+LY ALGG
Sbjct: 149 ITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGG 208
Query: 272 IRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI 331
++P CLPV +DVGTNN LL+D FYIGLR KR G++Y LL FM A + YG++ LI
Sbjct: 209 VQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI 268
Query: 332 QVFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLG 391
Q FEDFAN NAF LL+KY + +FNDDIQGTASV++AGL++ + ++ +++LF G
Sbjct: 269 Q-FEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFG 327
Query: 392 AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAHEH 450
AG A TGIAE+I ++ + + EE +I+L+D GL+ +R E + +H + +A +
Sbjct: 328 AGAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDM 384
Query: 451 EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAE 510
+++ + A +P LIG S F +EV+ AMA +NE+PIIF+LSNPTS++ECTAE
Sbjct: 385 PETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAE 444
Query: 511 EAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXX 570
EAYT++ G A++ASGSPF FE + + PGQ NNAYIFPG+ LG I+ V +D+
Sbjct: 445 EAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFL 504
Query: 571 XXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKY 630
VT+++ G +YP K IR+IS IA E+A Y+ G A P P+DL KY
Sbjct: 505 LAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKY 564
Query: 631 AESCMYSPAY 640
+ +Y+ Y
Sbjct: 565 VRAQVYNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 150/343 (43%), Gaps = 63/343 (18%)
Query: 236 VIVVTDGERILGLGDLGC-HGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
V VV+D R+LG GD+ G+G+ GK L LGGI +P+ ID
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA---VPICID----------- 138
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLE--KYGTT 352
K G+ + + EF+ ++ +G L ED + N + +L+ +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGAINL----EDISQPNCYKILDVLRESCD 187
Query: 353 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTN 412
V++DD QGTASV LAGL++A+K + + + R +F+GAG + T LI +
Sbjct: 188 IPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP-- 245
Query: 413 MPLEETRKKIWLVDSKGLIVSSR--LESLQHFKKPW--AHEHEPVKELVDAVNAIKPTIL 468
KKI + DSKG + + R ++ F + W P K A + +L
Sbjct: 246 -------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVL 298
Query: 469 IGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIFASG 525
I S G K E + S+ EKPI+F +NP + E AY + GR F
Sbjct: 299 ISLSTPGPGVVK--AEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF--- 353
Query: 526 SPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDM 568
P Q NN+ FPG+ G ++ A ++ D+M
Sbjct: 354 --------------PNQVNNSVGFPGILKGALIVRARKITDNM 382
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 198/455 (43%), Gaps = 94/455 (20%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTH- 353
F I +++ QE + + + + A+ +G L ED A+ F +LE+
Sbjct: 105 AFPIMIKE-----QEPNKFI-DIVKAIAPTFGGINL----EDIASPKCFYILERLREELD 154
Query: 354 -LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTN 412
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I +
Sbjct: 155 IPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAG 209
Query: 413 MPLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAI 463
+ E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 210 VKPENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA---- 264
Query: 464 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 523
+LI + G K + + +NE I+F L+NP E EEA G I A
Sbjct: 265 --DVLISFTRPGPGVIKP--QWIEKMNEDAIVFPLANPV--PEILPEEAK--KAGARIVA 316
Query: 524 SGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQE 583
+G +Y P Q NN FPG+ G + A + D M V +E
Sbjct: 317 TGRS----DY------PNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIV-EE 365
Query: 584 NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLA 618
++ ++ P I + A A VA +A + G+A
Sbjct: 366 PSEENIIPSPLNPI--VYAREARAVAEEAMKEGVA 398
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 175/402 (43%), Gaps = 89/402 (22%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDE 295
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 296 FYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTH-- 353
F I +++ QE + + + + A+ +G L ED A+ F +LE+
Sbjct: 106 FPIXIKE-----QEPNKFI-DIVKAIAPTFGGINL----EDIASPKCFYILERLREELDI 155
Query: 354 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 413
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGV 210
Query: 414 PLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIK 464
E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 211 KPENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 524
+LI + G K + + NE I+F L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPV--PEILPEEAK--KAGARIVAT 317
Query: 525 GSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 566
G +Y P Q NN FPG+ G + A + D
Sbjct: 318 GRS----DY------PNQINNLLGFPGIFRGALDVRARTITD 349
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 128/330 (38%), Gaps = 74/330 (22%)
Query: 232 KNIQVIVVTDGERILGLGDLGCH-GMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEK 290
K V V++DG +LGLGD+G M + GK +L+ A G+ +P+ +D E
Sbjct: 64 KKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEE- 119
Query: 291 LLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKY- 349
+ + A+ +G L ED + F++ ++
Sbjct: 120 -----------------------IISIVKALAPTFGGINL----EDISAPRCFEIEQRLI 152
Query: 350 GTTHL-VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 408
H+ VF+DD GTA VVLA + +++K L SL + + G G AG I
Sbjct: 153 KECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI--------- 203
Query: 409 KQTNMPLEETRKKIWLVDSKGLIVSSRLESL--QHFKKPWAHEHE-PVKELVDAVNAIKP 465
T L K+ +VD G+I L H E L DA+
Sbjct: 204 --TRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG--A 259
Query: 466 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIF 522
I IG S G E + MA+ +P+IF+++NP + E AY GR+ F
Sbjct: 260 DIFIGVSAPG-VLKAEWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGRSDF 315
Query: 523 ASGSPFDPFEYGDNVFVPGQANNAYIFPGL 552
P Q NN FPG+
Sbjct: 316 -----------------PNQINNVLAFPGI 328
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 155/385 (40%), Gaps = 91/385 (23%)
Query: 185 ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGER 244
E L ++YTP V + + +D K W V VV+DG
Sbjct: 28 ETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN----TVAVVSDGSA 70
Query: 245 ILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQ 302
+LGLG++G +G +PV GK L+ A I D F I L +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADI---------------------DAFPICLSE 108
Query: 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTH--LVFNDDI 360
E + + +++ ++G L ED F +L++ VF+DD
Sbjct: 109 SEE------EKIISIVKSLEPSFGGINL----EDIGAPKCFRILQRLSEEMNIPVFHDDQ 158
Query: 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 420
QGTA VV A ++A+K + + + + G G AG I + + L+ K
Sbjct: 159 QGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVK 207
Query: 421 KIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-PTILIGTSGQGRTF 478
+ VD KG++ + E+ L + A P + D A++ IG S +G
Sbjct: 208 NVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-RGNIL 266
Query: 479 TKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFASGSPFDPFEYGDNV 537
E ++ M+ KP+IF+L+NP + + A EA G I A+G D+
Sbjct: 267 KPEWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVATGR-------SDH- 310
Query: 538 FVPGQANNAYIFPGLGLGLIMSGAI 562
P Q NN FPG IM GA+
Sbjct: 311 --PNQVNNLLAFPG-----IMKGAV 328
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 159/393 (40%), Gaps = 87/393 (22%)
Query: 173 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 231
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 25 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 70
Query: 232 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 289
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 71 ---TVAVVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI----------------- 109
Query: 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKY 349
D F I L + E + + +++ ++G L ED F +L++
Sbjct: 110 ----DAFPICLSESEE------EKIISIVKSLEPSFGGINL----EDIGAPKCFRILQRL 155
Query: 350 GTTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEI 407
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 156 SEEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL---- 211
Query: 408 SKQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-P 465
L+ K + VD KG++ + E+ L + A P + D A++
Sbjct: 212 -------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGA 264
Query: 466 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFAS 524
IG S +G E ++ + KP+IF+L+NP + + A EA G I A+
Sbjct: 265 DFFIGVS-RGNILKPEWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVAT 315
Query: 525 GSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLI 557
G D+ P Q NN FPG+ G +
Sbjct: 316 GR-------SDH---PNQVNNLLAFPGIXKGAV 338
>pdb|1SI7|A Chain A, Structure Of E. Coli Trna Psi 13 Pseudouridine Synthase
Trud
Length = 369
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 389 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 443
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 179 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 235
Query: 444 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 500
V ++VD +A++ +G+G F T+E+ E +N+K ++ + +
Sbjct: 236 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELMITAAL 279
Query: 501 PTSQSECTAEEAYTWSQG 518
P S T EA + Q
Sbjct: 280 PGSGEWGTQREALAFEQA 297
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 580 VTQENFDKGLLYPPFKNIR 598
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 580 VTQENFDKGLLYPPFKNIR 598
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|1SB7|A Chain A, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
pdb|1SB7|B Chain B, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
Length = 368
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 389 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 443
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 178 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 234
Query: 444 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 500
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 235 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 278
Query: 501 PTSQSECTAEEAYTWSQG 518
P S T EA + Q
Sbjct: 279 PGSGEWGTQREALAFEQA 296
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 580 VTQENFDKGLLYPPFKNIR 598
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 580 VTQENFDKGLLYPPFKNIR 598
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|1SZW|A Chain A, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
pdb|1SZW|B Chain B, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
Length = 379
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 389 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 443
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 181 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 237
Query: 444 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 500
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 238 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 281
Query: 501 PTSQSECTAEEAYTWSQG 518
P S T EA + Q
Sbjct: 282 PGSGEWGTQREALAFEQA 299
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 444 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 503 SQSECTAE 510
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 353 HLVFNDDIQGTASV-----VLAGLISAMKFLGGSLAD-------QRFLFLGAGEAGTGIA 400
H +N DI G SV ++ +AM+ LG S D ++ L +AG
Sbjct: 146 HYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSAD 205
Query: 401 EL--IALEISKQTNMPLEETRKKIWLVDSKGLIVSS-----RLESLQHFKKPWAHEHEPV 453
+ + + + K +P EE ++ + + +V + L+++ + EHE V
Sbjct: 206 KFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAV 265
Query: 454 KELVDAVNAIK 464
+EL D + I+
Sbjct: 266 RELRDFITQIE 276
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 444 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 503 SQSECTAE 510
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 444 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 503 SQSECTAE 510
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 444 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 503 SQSECTAE 510
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 444 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 503 SQSECTAE 510
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 211 GVFISLKDKGKVLEVLRNWPE---KNIQVIVVTDGERILGLG 249
G+ I + G++L+ ++N P KN+Q +V+ + +RIL +G
Sbjct: 176 GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,266,361
Number of Sequences: 62578
Number of extensions: 831159
Number of successful extensions: 2052
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1977
Number of HSP's gapped (non-prelim): 34
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)