Query 006454
Match_columns 644
No_of_seqs 244 out of 1379
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 23:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-222 4E-227 1766.0 49.3 560 82-643 8-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 2E-210 5E-215 1705.3 51.9 540 100-644 13-561 (563)
3 PLN03129 NADP-dependent malic 100.0 7E-210 2E-214 1705.8 53.1 543 101-644 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 5E-208 1E-212 1685.3 52.2 539 98-639 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2E-118 5E-123 948.0 31.3 427 137-644 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 6E-110 1E-114 942.7 34.3 370 184-633 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 4E-109 1E-113 940.0 34.4 369 184-633 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 1E-107 2E-112 925.0 34.6 358 184-620 30-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 1.1E-98 2E-103 770.4 29.8 277 360-638 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 1.4E-95 3E-100 739.5 19.9 252 360-613 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.1E-92 2.4E-97 717.8 26.1 251 360-612 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.5E-83 5.4E-88 621.4 8.3 182 168-350 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 6.4E-58 1.4E-62 456.5 22.3 223 360-612 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.8 3.7E-08 8E-13 84.7 11.7 86 362-499 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.5 0.0068 1.5E-07 67.3 19.5 119 352-502 173-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0018 3.9E-08 71.1 10.3 121 361-502 158-280 (417)
17 PRK09414 glutamate dehydrogena 97.1 0.015 3.3E-07 65.0 16.4 188 305-514 138-357 (445)
18 PLN02477 glutamate dehydrogena 97.1 0.011 2.4E-07 65.4 14.9 185 305-514 112-324 (410)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0084 1.8E-07 60.8 12.3 130 363-514 2-140 (217)
20 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0044 9.4E-08 65.4 10.5 136 340-502 139-276 (311)
21 PRK00045 hemA glutamyl-tRNA re 96.9 0.0049 1.1E-07 67.7 9.7 120 362-502 161-283 (423)
22 TIGR00936 ahcY adenosylhomocys 96.8 0.018 3.9E-07 63.7 13.4 127 352-512 156-293 (406)
23 PLN02494 adenosylhomocysteinas 96.7 0.024 5.2E-07 63.9 13.4 130 352-515 215-355 (477)
24 cd00401 AdoHcyase S-adenosyl-L 96.6 0.012 2.7E-07 65.1 11.0 129 352-514 163-302 (413)
25 PRK14031 glutamate dehydrogena 96.6 0.068 1.5E-06 59.9 16.7 182 305-502 134-347 (444)
26 PRK14982 acyl-ACP reductase; P 96.6 0.018 3.8E-07 62.4 11.7 113 363-503 134-250 (340)
27 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.018 4E-07 56.3 10.4 92 367-502 27-119 (168)
28 PF01488 Shikimate_DH: Shikima 96.5 0.0041 9E-08 57.9 5.3 102 380-503 8-113 (135)
29 TIGR02853 spore_dpaA dipicolin 96.4 0.028 6.1E-07 59.1 11.2 139 360-527 127-265 (287)
30 PTZ00079 NADP-specific glutama 96.2 0.43 9.3E-06 53.8 19.9 181 305-503 143-358 (454)
31 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.046 1E-06 55.8 11.0 123 361-502 8-140 (227)
32 COG0373 HemA Glutamyl-tRNA red 96.1 0.031 6.8E-07 62.0 10.3 213 340-616 139-361 (414)
33 PLN00203 glutamyl-tRNA reducta 96.0 0.024 5.2E-07 64.5 9.1 219 341-615 226-455 (519)
34 cd05313 NAD_bind_2_Glu_DH NAD( 96.0 0.14 3.1E-06 53.5 13.9 125 362-503 16-159 (254)
35 PRK08306 dipicolinate synthase 95.9 0.067 1.5E-06 56.4 11.3 127 367-527 135-266 (296)
36 PRK14030 glutamate dehydrogena 95.8 0.46 1E-05 53.5 17.8 189 305-514 134-357 (445)
37 PTZ00075 Adenosylhomocysteinas 95.8 0.2 4.3E-06 56.8 14.9 122 352-501 215-343 (476)
38 cd01065 NAD_bind_Shikimate_DH 95.8 0.036 7.9E-07 51.2 7.7 113 369-502 4-120 (155)
39 PRK08293 3-hydroxybutyryl-CoA 95.7 0.22 4.9E-06 51.6 14.1 191 385-631 4-221 (287)
40 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.081 1.8E-06 52.7 10.1 123 362-514 4-129 (200)
41 PRK13940 glutamyl-tRNA reducta 95.7 0.043 9.4E-07 60.7 9.0 132 340-502 142-276 (414)
42 PRK12549 shikimate 5-dehydroge 95.6 0.043 9.2E-07 57.6 8.2 90 369-475 112-203 (284)
43 PLN00106 malate dehydrogenase 95.5 0.088 1.9E-06 56.6 10.2 118 369-502 4-138 (323)
44 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.1 2.2E-06 50.9 9.7 54 363-428 7-61 (194)
45 PRK14175 bifunctional 5,10-met 95.4 0.098 2.1E-06 55.6 10.2 95 362-500 136-231 (286)
46 PRK14192 bifunctional 5,10-met 95.3 0.06 1.3E-06 56.8 8.4 97 362-502 137-235 (283)
47 TIGR01809 Shik-DH-AROM shikima 94.7 0.08 1.7E-06 55.4 7.1 102 353-482 100-208 (282)
48 TIGR00518 alaDH alanine dehydr 94.6 0.13 2.9E-06 55.9 8.6 95 382-500 165-268 (370)
49 PF03807 F420_oxidored: NADP o 94.4 0.079 1.7E-06 45.5 5.3 95 386-501 1-96 (96)
50 PF00670 AdoHcyase_NAD: S-aden 94.4 0.31 6.8E-06 48.0 9.8 120 361-514 3-123 (162)
51 PRK00676 hemA glutamyl-tRNA re 94.3 0.24 5.2E-06 53.8 9.7 122 340-503 136-265 (338)
52 cd05296 GH4_P_beta_glucosidase 93.9 0.12 2.7E-06 57.3 6.7 126 385-525 1-166 (419)
53 PRK10792 bifunctional 5,10-met 93.8 0.6 1.3E-05 49.7 11.4 93 363-499 138-231 (285)
54 TIGR02356 adenyl_thiF thiazole 93.7 0.14 3E-06 51.0 6.2 38 380-428 17-54 (202)
55 PRK05086 malate dehydrogenase; 93.5 0.42 9E-06 51.0 9.6 105 385-502 1-121 (312)
56 PF00208 ELFV_dehydrog: Glutam 93.4 0.19 4E-06 52.1 6.7 130 359-502 6-151 (244)
57 PRK08605 D-lactate dehydrogena 93.3 1.2 2.6E-05 47.8 12.7 153 315-500 59-237 (332)
58 cd00650 LDH_MDH_like NAD-depen 92.9 0.23 4.9E-06 51.0 6.4 126 387-526 1-145 (263)
59 PF00056 Ldh_1_N: lactate/mala 92.9 0.07 1.5E-06 50.4 2.5 105 385-502 1-121 (141)
60 PRK06130 3-hydroxybutyryl-CoA 92.8 3.6 7.7E-05 43.0 15.3 121 385-531 5-142 (311)
61 PRK08328 hypothetical protein; 92.7 0.068 1.5E-06 54.4 2.3 120 346-503 7-131 (231)
62 TIGR02354 thiF_fam2 thiamine b 92.7 0.19 4.1E-06 50.3 5.4 108 380-507 17-127 (200)
63 PRK14191 bifunctional 5,10-met 92.6 0.48 1E-05 50.5 8.6 83 364-484 137-220 (285)
64 cd05212 NAD_bind_m-THF_DH_Cycl 92.5 1.1 2.3E-05 43.0 9.9 83 365-484 9-91 (140)
65 PRK09424 pntA NAD(P) transhydr 92.5 1 2.2E-05 51.5 11.4 180 290-509 82-296 (509)
66 cd05291 HicDH_like L-2-hydroxy 92.4 0.47 1E-05 50.0 8.1 126 386-527 2-144 (306)
67 PRK07531 bifunctional 3-hydrox 92.3 1.8 3.9E-05 48.9 13.1 123 385-532 5-144 (495)
68 PTZ00325 malate dehydrogenase; 92.2 0.86 1.9E-05 49.1 9.8 106 382-502 6-128 (321)
69 PRK12749 quinate/shikimate deh 92.1 0.34 7.3E-06 51.2 6.6 49 369-428 109-157 (288)
70 PRK12548 shikimate 5-dehydroge 91.8 0.49 1.1E-05 49.7 7.3 58 352-428 102-159 (289)
71 PRK08223 hypothetical protein; 91.6 0.36 7.9E-06 51.4 6.2 58 343-429 4-61 (287)
72 PRK00066 ldh L-lactate dehydro 91.6 0.4 8.8E-06 51.1 6.6 126 385-527 7-149 (315)
73 PRK05600 thiamine biosynthesis 91.4 0.46 1E-05 52.0 7.0 118 346-497 19-162 (370)
74 PRK06035 3-hydroxyacyl-CoA deh 91.4 3.2 7E-05 43.2 12.9 32 385-428 4-35 (291)
75 cd01079 NAD_bind_m-THF_DH NAD 91.4 1.1 2.5E-05 45.4 9.2 103 365-484 34-147 (197)
76 cd05197 GH4_glycoside_hydrolas 91.3 0.53 1.1E-05 52.5 7.4 125 385-525 1-166 (425)
77 PRK08762 molybdopterin biosynt 91.2 0.4 8.8E-06 52.1 6.2 37 381-428 132-168 (376)
78 PRK14027 quinate/shikimate deh 91.1 0.46 1E-05 50.1 6.4 49 369-428 112-160 (283)
79 PRK12475 thiamine/molybdopteri 91.0 0.31 6.8E-06 52.6 5.1 39 380-429 20-58 (338)
80 PRK06129 3-hydroxyacyl-CoA deh 90.9 0.46 9.9E-06 50.0 6.1 32 385-428 3-34 (308)
81 PLN02928 oxidoreductase family 90.8 2.8 6.1E-05 45.5 12.1 139 361-523 120-284 (347)
82 cd00757 ThiF_MoeB_HesA_family 90.7 0.9 2E-05 45.9 7.8 104 380-502 17-123 (228)
83 PRK14194 bifunctional 5,10-met 90.7 1 2.2E-05 48.4 8.6 92 364-499 139-231 (301)
84 PRK00257 erythronate-4-phospha 90.6 2.1 4.5E-05 47.4 11.0 158 363-561 95-264 (381)
85 PRK14619 NAD(P)H-dependent gly 90.3 2.3 5.1E-05 44.7 10.7 33 384-428 4-36 (308)
86 PRK00258 aroE shikimate 5-dehy 90.3 0.69 1.5E-05 48.1 6.7 88 368-475 106-196 (278)
87 cd01487 E1_ThiF_like E1_ThiF_l 90.3 0.89 1.9E-05 44.4 7.1 32 386-428 1-32 (174)
88 PTZ00117 malate dehydrogenase; 90.3 1.3 2.8E-05 47.3 8.9 126 383-526 4-148 (319)
89 PRK04346 tryptophan synthase s 90.2 6.7 0.00015 43.7 14.6 265 274-596 20-354 (397)
90 PRK09260 3-hydroxybutyryl-CoA 90.2 0.69 1.5E-05 48.0 6.6 123 385-532 2-145 (288)
91 PRK07878 molybdopterin biosynt 90.2 0.63 1.4E-05 51.1 6.6 38 380-428 38-75 (392)
92 cd05297 GH4_alpha_glucosidase_ 90.2 1 2.2E-05 50.0 8.2 126 386-527 2-170 (423)
93 PRK14189 bifunctional 5,10-met 90.1 1.2 2.5E-05 47.6 8.4 84 363-484 137-221 (285)
94 PTZ00082 L-lactate dehydrogena 90.1 0.87 1.9E-05 48.8 7.5 125 384-526 6-154 (321)
95 PRK15076 alpha-galactosidase; 89.8 0.92 2E-05 50.6 7.6 129 385-529 2-174 (431)
96 PRK14176 bifunctional 5,10-met 89.8 1.5 3.2E-05 47.0 8.7 84 363-484 143-227 (287)
97 PRK07688 thiamine/molybdopteri 89.6 0.45 9.8E-06 51.4 4.9 38 380-428 20-57 (339)
98 PRK14178 bifunctional 5,10-met 89.5 1.1 2.4E-05 47.7 7.6 85 362-484 130-215 (279)
99 COG0578 GlpA Glycerol-3-phosph 89.4 2.6 5.7E-05 48.6 10.9 163 382-617 10-179 (532)
100 TIGR02992 ectoine_eutC ectoine 89.4 2.5 5.4E-05 45.2 10.2 115 370-511 117-237 (326)
101 PRK15438 erythronate-4-phospha 89.4 3.3 7.2E-05 45.8 11.4 116 362-513 94-217 (378)
102 PF00899 ThiF: ThiF family; I 89.3 0.64 1.4E-05 42.9 5.0 35 383-428 1-35 (135)
103 COG0169 AroE Shikimate 5-dehyd 88.9 0.94 2E-05 48.2 6.5 85 370-475 110-201 (283)
104 cd00704 MDH Malate dehydrogena 88.8 1.7 3.7E-05 46.8 8.5 110 386-502 2-129 (323)
105 PRK06223 malate dehydrogenase; 88.8 1.1 2.3E-05 47.0 6.8 120 385-529 3-148 (307)
106 PF01210 NAD_Gly3P_dh_N: NAD-d 88.7 0.48 1E-05 45.1 3.9 85 386-490 1-93 (157)
107 PF02826 2-Hacid_dh_C: D-isome 88.6 1.9 4.1E-05 42.0 7.9 115 375-521 27-147 (178)
108 TIGR01915 npdG NADPH-dependent 88.5 2 4.4E-05 42.9 8.4 96 386-504 2-106 (219)
109 PF02056 Glyco_hydro_4: Family 88.2 0.94 2E-05 45.4 5.6 110 386-509 1-152 (183)
110 PRK08374 homoserine dehydrogen 88.0 2.8 6.1E-05 45.2 9.6 106 385-497 3-121 (336)
111 COG0111 SerA Phosphoglycerate 87.4 4.4 9.5E-05 43.9 10.5 99 364-487 104-224 (324)
112 cd05298 GH4_GlvA_pagL_like Gly 87.4 1.3 2.8E-05 49.7 6.7 130 385-529 1-171 (437)
113 cd01336 MDH_cytoplasmic_cytoso 86.9 4.1 8.9E-05 43.8 10.0 135 385-529 3-157 (325)
114 PRK05597 molybdopterin biosynt 86.7 2.1 4.6E-05 46.5 7.8 38 380-428 24-61 (355)
115 PRK07634 pyrroline-5-carboxyla 86.7 1.9 4.1E-05 43.1 6.9 118 383-525 3-121 (245)
116 PRK14851 hypothetical protein; 86.6 2.5 5.4E-05 50.1 8.8 122 380-518 39-194 (679)
117 TIGR01758 MDH_euk_cyt malate d 86.6 4.2 9.2E-05 43.8 9.9 136 386-531 1-156 (324)
118 cd01337 MDH_glyoxysomal_mitoch 86.4 4.5 9.8E-05 43.5 9.9 102 386-502 2-120 (310)
119 TIGR01763 MalateDH_bact malate 86.4 1.8 3.9E-05 46.0 6.9 124 385-526 2-144 (305)
120 PRK14183 bifunctional 5,10-met 86.3 3 6.6E-05 44.5 8.4 85 362-484 135-220 (281)
121 PRK14190 bifunctional 5,10-met 86.0 3.1 6.8E-05 44.4 8.4 84 363-484 137-221 (284)
122 PRK12550 shikimate 5-dehydroge 85.9 1.8 3.8E-05 45.6 6.5 48 369-428 108-155 (272)
123 PRK14184 bifunctional 5,10-met 85.7 2.7 5.9E-05 44.9 7.8 88 363-484 136-224 (286)
124 PRK07411 hypothetical protein; 85.5 2.2 4.7E-05 47.0 7.2 38 380-428 34-71 (390)
125 PRK11880 pyrroline-5-carboxyla 85.5 3.6 7.9E-05 41.9 8.4 121 385-533 3-123 (267)
126 PLN02306 hydroxypyruvate reduc 85.5 6.8 0.00015 43.4 11.0 203 343-581 100-345 (386)
127 PRK08644 thiamine biosynthesis 85.4 0.92 2E-05 45.8 3.9 38 380-428 24-61 (212)
128 TIGR00872 gnd_rel 6-phosphoglu 85.2 3.2 6.9E-05 43.6 8.0 99 386-510 2-102 (298)
129 PRK13802 bifunctional indole-3 84.7 23 0.0005 42.4 15.4 52 352-406 348-402 (695)
130 cd01338 MDH_choloroplast_like 84.6 4.9 0.00011 43.3 9.2 111 385-502 3-131 (322)
131 PF01262 AlaDh_PNT_C: Alanine 84.6 0.38 8.3E-06 46.3 0.8 89 382-487 18-130 (168)
132 PRK14179 bifunctional 5,10-met 84.6 3.8 8.1E-05 43.8 8.2 84 363-484 137-221 (284)
133 PRK07679 pyrroline-5-carboxyla 84.5 23 0.0005 36.7 13.8 109 383-516 2-111 (279)
134 TIGR00561 pntA NAD(P) transhyd 84.5 2.3 5E-05 48.8 7.0 167 289-488 80-276 (511)
135 PRK14174 bifunctional 5,10-met 84.3 3.6 7.8E-05 44.2 7.9 87 364-484 139-226 (295)
136 PRK14177 bifunctional 5,10-met 84.1 4.2 9E-05 43.5 8.3 83 364-484 139-222 (284)
137 COG0334 GdhA Glutamate dehydro 84.0 26 0.00056 39.6 14.5 179 304-503 111-317 (411)
138 TIGR01772 MDH_euk_gproteo mala 84.0 6.2 0.00013 42.4 9.6 126 386-526 1-146 (312)
139 PF02882 THF_DHG_CYH_C: Tetrah 83.8 4.6 9.9E-05 39.7 7.8 84 363-484 15-99 (160)
140 PRK14106 murD UDP-N-acetylmura 83.6 4.3 9.3E-05 44.4 8.4 112 381-526 2-116 (450)
141 TIGR02355 moeB molybdopterin s 83.6 1.3 2.8E-05 45.6 4.2 103 380-502 20-126 (240)
142 PRK14188 bifunctional 5,10-met 83.3 3.7 8E-05 44.1 7.5 81 364-482 138-219 (296)
143 PRK00094 gpsA NAD(P)H-dependen 83.3 2.4 5.1E-05 44.1 6.0 95 386-503 3-109 (325)
144 PRK14618 NAD(P)H-dependent gly 83.3 1.7 3.8E-05 45.8 5.1 32 385-428 5-36 (328)
145 PRK01710 murD UDP-N-acetylmura 83.1 7.7 0.00017 43.1 10.2 111 382-526 12-125 (458)
146 cd01339 LDH-like_MDH L-lactate 82.8 2.8 6E-05 44.1 6.3 117 387-526 1-141 (300)
147 PRK13243 glyoxylate reductase; 82.8 14 0.0003 39.9 11.8 170 351-555 89-292 (333)
148 PRK08291 ectoine utilization p 82.7 6 0.00013 42.4 8.9 115 370-511 120-240 (330)
149 PRK14172 bifunctional 5,10-met 82.6 6.1 0.00013 42.2 8.7 83 364-484 138-221 (278)
150 TIGR01759 MalateDH-SF1 malate 82.3 6.8 0.00015 42.3 9.2 122 385-516 4-143 (323)
151 cd01485 E1-1_like Ubiquitin ac 82.1 1.3 2.8E-05 44.2 3.4 74 380-470 15-94 (198)
152 PRK12921 2-dehydropantoate 2-r 82.0 5.9 0.00013 40.8 8.3 99 386-503 2-106 (305)
153 PRK15116 sulfur acceptor prote 81.8 4.6 0.0001 42.7 7.5 108 380-505 26-136 (268)
154 cd05290 LDH_3 A subgroup of L- 81.8 4.1 8.8E-05 43.6 7.2 102 386-502 1-122 (307)
155 PRK07066 3-hydroxybutyryl-CoA 81.6 4.6 9.9E-05 43.7 7.5 32 385-428 8-39 (321)
156 PRK07530 3-hydroxybutyryl-CoA 81.4 9.3 0.0002 39.8 9.5 32 385-428 5-36 (292)
157 PRK06476 pyrroline-5-carboxyla 81.3 23 0.0005 36.2 12.2 95 386-502 2-96 (258)
158 PRK05690 molybdopterin biosynt 81.3 2 4.3E-05 44.3 4.5 38 380-428 28-65 (245)
159 PLN02516 methylenetetrahydrofo 81.3 6.7 0.00014 42.3 8.5 85 362-484 145-230 (299)
160 COG0686 Ald Alanine dehydrogen 81.0 2.2 4.8E-05 46.6 4.8 109 382-511 166-290 (371)
161 PRK14193 bifunctional 5,10-met 80.5 7.2 0.00016 41.7 8.4 85 364-484 138-223 (284)
162 TIGR00507 aroE shikimate 5-deh 80.2 4.1 8.9E-05 42.1 6.4 48 369-428 102-149 (270)
163 cd01492 Aos1_SUMO Ubiquitin ac 80.1 1.5 3.3E-05 43.8 3.1 77 380-473 17-97 (197)
164 PRK05442 malate dehydrogenase; 80.1 11 0.00024 40.8 9.8 121 386-516 6-144 (326)
165 PRK14171 bifunctional 5,10-met 80.1 7.9 0.00017 41.6 8.6 86 361-484 136-222 (288)
166 cd01483 E1_enzyme_family Super 80.0 2.5 5.4E-05 39.2 4.3 93 386-500 1-98 (143)
167 PRK02472 murD UDP-N-acetylmura 79.7 6.5 0.00014 43.0 8.1 111 382-526 3-116 (447)
168 PRK14187 bifunctional 5,10-met 79.6 8.7 0.00019 41.3 8.7 84 363-484 139-223 (294)
169 TIGR01381 E1_like_apg7 E1-like 79.3 1.9 4E-05 50.9 3.9 40 380-430 334-373 (664)
170 PTZ00345 glycerol-3-phosphate 79.3 7.1 0.00015 43.0 8.2 23 383-405 10-32 (365)
171 PRK14166 bifunctional 5,10-met 79.2 8.9 0.00019 41.0 8.6 85 362-484 135-220 (282)
172 PRK14170 bifunctional 5,10-met 79.1 8.8 0.00019 41.1 8.5 84 363-484 136-220 (284)
173 PRK09310 aroDE bifunctional 3- 79.0 4.1 8.8E-05 46.1 6.4 47 369-427 317-363 (477)
174 cd00755 YgdL_like Family of ac 78.8 2.3 5E-05 43.8 4.1 37 381-428 8-44 (231)
175 PRK05808 3-hydroxybutyryl-CoA 78.7 15 0.00033 38.0 10.0 32 385-428 4-35 (282)
176 PRK06522 2-dehydropantoate 2-r 78.4 6.2 0.00013 40.5 7.1 97 386-503 2-104 (304)
177 PRK07680 late competence prote 78.3 5.3 0.00012 41.2 6.5 98 386-503 2-100 (273)
178 cd05293 LDH_1 A subgroup of L- 78.1 6.8 0.00015 42.0 7.4 126 385-527 4-147 (312)
179 PRK06141 ornithine cyclodeamin 78.1 18 0.0004 38.5 10.6 104 383-511 124-232 (314)
180 PRK10886 DnaA initiator-associ 77.9 9.8 0.00021 38.4 8.1 91 382-487 39-130 (196)
181 PRK06436 glycerate dehydrogena 77.6 31 0.00067 37.0 12.2 92 379-502 117-212 (303)
182 TIGR03366 HpnZ_proposed putati 77.3 24 0.00052 36.1 10.9 47 369-427 107-153 (280)
183 COG0345 ProC Pyrroline-5-carbo 77.3 14 0.0003 39.3 9.2 106 385-517 2-108 (266)
184 PRK00141 murD UDP-N-acetylmura 77.2 11 0.00024 42.2 9.1 90 381-495 12-102 (473)
185 PRK14168 bifunctional 5,10-met 77.2 11 0.00023 40.7 8.6 89 362-484 139-228 (297)
186 PRK12480 D-lactate dehydrogena 77.0 19 0.0004 39.0 10.4 120 350-500 90-235 (330)
187 PF07992 Pyr_redox_2: Pyridine 76.9 3.9 8.4E-05 38.8 4.7 31 386-428 1-31 (201)
188 PRK09599 6-phosphogluconate de 76.9 14 0.00031 38.7 9.3 92 386-501 2-96 (301)
189 PRK08410 2-hydroxyacid dehydro 76.7 23 0.00049 37.9 10.8 136 350-521 84-252 (311)
190 PRK14185 bifunctional 5,10-met 76.5 12 0.00027 40.2 8.8 87 364-484 137-224 (293)
191 PRK06270 homoserine dehydrogen 76.4 21 0.00046 38.6 10.6 106 385-497 3-124 (341)
192 KOG0029 Amine oxidase [Seconda 76.2 1.3 2.8E-05 50.5 1.5 25 382-406 13-37 (501)
193 PRK09880 L-idonate 5-dehydroge 75.9 31 0.00068 36.2 11.6 44 372-427 159-202 (343)
194 PRK08268 3-hydroxy-acyl-CoA de 75.9 9.8 0.00021 43.5 8.3 97 463-573 112-222 (507)
195 KOG0685 Flavin-containing amin 75.7 1.4 2.9E-05 50.2 1.4 26 380-405 17-42 (498)
196 TIGR03140 AhpF alkyl hydropero 75.2 7.2 0.00016 44.1 7.0 85 317-405 138-233 (515)
197 PRK07574 formate dehydrogenase 74.9 22 0.00048 39.5 10.4 116 379-525 187-308 (385)
198 PRK15469 ghrA bifunctional gly 74.8 21 0.00046 38.3 10.1 177 362-580 98-297 (312)
199 KOG0069 Glyoxylate/hydroxypyru 74.8 18 0.00039 39.7 9.6 100 362-487 120-244 (336)
200 PRK07231 fabG 3-ketoacyl-(acyl 74.4 9.2 0.0002 37.4 6.7 75 381-474 2-91 (251)
201 PRK15317 alkyl hydroperoxide r 74.3 4 8.7E-05 46.1 4.7 85 331-428 148-243 (517)
202 PF01113 DapB_N: Dihydrodipico 74.3 6.9 0.00015 36.1 5.5 95 386-497 2-97 (124)
203 cd05294 LDH-like_MDH_nadp A la 74.2 16 0.00034 39.0 8.9 100 385-502 1-124 (309)
204 PRK14180 bifunctional 5,10-met 73.7 15 0.00033 39.3 8.5 86 361-484 135-221 (282)
205 TIGR01408 Ube1 ubiquitin-activ 73.6 1.6 3.4E-05 53.8 1.4 88 314-428 358-457 (1008)
206 COG1486 CelF Alpha-galactosida 73.3 4.2 9E-05 46.0 4.4 124 383-521 2-166 (442)
207 PRK14182 bifunctional 5,10-met 72.7 18 0.00038 38.9 8.7 83 364-484 137-220 (282)
208 PRK14169 bifunctional 5,10-met 72.7 18 0.00039 38.8 8.8 85 362-484 134-219 (282)
209 KOG2337 Ubiquitin activating E 72.4 4.7 0.0001 46.6 4.6 165 382-559 338-522 (669)
210 cd05292 LDH_2 A subgroup of L- 72.3 11 0.00024 40.0 7.2 126 386-528 2-144 (308)
211 TIGR02622 CDP_4_6_dhtase CDP-g 72.1 11 0.00025 39.6 7.2 102 382-499 2-127 (349)
212 PRK14173 bifunctional 5,10-met 71.9 18 0.00038 38.9 8.5 84 363-484 134-218 (287)
213 PLN02819 lysine-ketoglutarate 71.8 19 0.00041 44.9 9.9 101 383-488 202-326 (1042)
214 PRK14181 bifunctional 5,10-met 71.5 17 0.00037 39.0 8.3 89 362-484 131-220 (287)
215 PRK06487 glycerate dehydrogena 71.5 85 0.0018 33.7 13.6 187 351-581 88-309 (317)
216 PRK12490 6-phosphogluconate de 71.5 20 0.00044 37.7 8.8 94 386-502 2-97 (299)
217 PLN02616 tetrahydrofolate dehy 71.4 16 0.00036 40.5 8.4 83 364-484 211-294 (364)
218 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.4 32 0.0007 39.4 11.0 36 539-574 186-221 (503)
219 PF03447 NAD_binding_3: Homose 71.4 8 0.00017 34.7 5.1 88 391-496 1-88 (117)
220 PRK06932 glycerate dehydrogena 71.2 32 0.0007 36.9 10.4 138 380-554 143-289 (314)
221 PRK14167 bifunctional 5,10-met 71.1 20 0.00042 38.8 8.7 87 364-484 137-224 (297)
222 PF02423 OCD_Mu_crystall: Orni 70.8 9.2 0.0002 40.8 6.2 102 384-510 128-236 (313)
223 PLN03139 formate dehydrogenase 70.7 36 0.00077 38.0 10.9 142 379-553 194-342 (386)
224 PF00070 Pyr_redox: Pyridine n 70.6 8.6 0.00019 32.2 4.8 35 386-432 1-35 (80)
225 cd08237 ribitol-5-phosphate_DH 70.5 75 0.0016 33.6 12.9 35 383-427 163-197 (341)
226 PRK13803 bifunctional phosphor 70.4 1.5E+02 0.0033 34.9 16.4 261 274-596 233-566 (610)
227 cd01491 Ube1_repeat1 Ubiquitin 70.3 4.2 9E-05 43.4 3.5 38 380-428 15-52 (286)
228 cd01486 Apg7 Apg7 is an E1-lik 70.0 5.8 0.00013 43.0 4.5 32 386-428 1-32 (307)
229 cd01484 E1-2_like Ubiquitin ac 70.0 6 0.00013 40.9 4.4 32 386-428 1-32 (234)
230 PRK13581 D-3-phosphoglycerate 69.9 72 0.0016 36.7 13.4 195 351-583 86-305 (526)
231 PRK08229 2-dehydropantoate 2-r 69.8 9.1 0.0002 40.3 5.9 104 385-505 3-113 (341)
232 PTZ00142 6-phosphogluconate de 69.6 9.2 0.0002 43.5 6.2 97 385-501 2-103 (470)
233 COG0190 FolD 5,10-methylene-te 69.6 19 0.00041 38.7 8.1 86 361-484 133-219 (283)
234 PLN02602 lactate dehydrogenase 69.2 16 0.00034 40.1 7.6 123 385-526 38-180 (350)
235 PRK12439 NAD(P)H-dependent gly 69.0 11 0.00024 40.5 6.4 22 384-405 7-28 (341)
236 PRK06153 hypothetical protein; 68.8 4.3 9.3E-05 45.3 3.3 161 307-502 110-278 (393)
237 PRK14186 bifunctional 5,10-met 68.5 24 0.00052 38.1 8.7 83 364-484 138-221 (297)
238 PRK07502 cyclohexadienyl dehyd 68.5 31 0.00068 36.2 9.5 34 385-428 7-40 (307)
239 TIGR00873 gnd 6-phosphoglucona 68.4 15 0.00032 41.8 7.4 95 386-500 1-99 (467)
240 PRK13938 phosphoheptose isomer 68.3 16 0.00036 36.7 7.0 104 383-501 44-150 (196)
241 TIGR02371 ala_DH_arch alanine 68.1 36 0.00079 36.6 10.0 104 383-511 127-235 (325)
242 TIGR01327 PGDH D-3-phosphoglyc 67.7 1.5E+02 0.0033 34.1 15.4 195 351-582 84-303 (525)
243 PRK09754 phenylpropionate diox 67.5 7.7 0.00017 42.0 4.9 36 383-428 2-37 (396)
244 PF13738 Pyr_redox_3: Pyridine 67.5 6.3 0.00014 37.6 3.8 30 388-428 1-30 (203)
245 cd01488 Uba3_RUB Ubiquitin act 67.2 7 0.00015 41.9 4.4 32 386-428 1-32 (291)
246 PLN02520 bifunctional 3-dehydr 67.1 12 0.00026 42.9 6.6 38 379-428 374-411 (529)
247 PLN02545 3-hydroxybutyryl-CoA 67.1 44 0.00096 34.8 10.2 32 385-428 5-36 (295)
248 COG0476 ThiF Dinucleotide-util 67.0 8 0.00017 39.6 4.6 57 345-428 7-63 (254)
249 PLN02897 tetrahydrofolate dehy 67.0 23 0.0005 39.1 8.3 83 364-484 194-277 (345)
250 PF01494 FAD_binding_3: FAD bi 66.8 7.8 0.00017 39.4 4.5 34 385-430 2-35 (356)
251 PF02737 3HCDH_N: 3-hydroxyacy 66.7 8.5 0.00018 37.8 4.6 90 386-497 1-111 (180)
252 TIGR01214 rmlD dTDP-4-dehydror 66.6 26 0.00056 35.3 8.2 60 386-475 1-61 (287)
253 PRK15409 bifunctional glyoxyla 66.4 52 0.0011 35.5 10.8 169 351-554 88-288 (323)
254 PRK14620 NAD(P)H-dependent gly 65.9 16 0.00034 38.6 6.7 31 386-428 2-32 (326)
255 PRK12429 3-hydroxybutyrate deh 65.8 29 0.00063 34.1 8.2 35 382-428 2-37 (258)
256 PF01408 GFO_IDH_MocA: Oxidore 65.6 4.7 0.0001 35.6 2.3 90 386-496 2-91 (120)
257 PRK00421 murC UDP-N-acetylmura 65.5 15 0.00032 40.8 6.7 108 383-526 6-115 (461)
258 TIGR01771 L-LDH-NAD L-lactate 65.2 14 0.0003 39.4 6.1 124 389-527 1-140 (299)
259 PRK00536 speE spermidine synth 64.9 11 0.00023 39.9 5.2 101 385-528 74-175 (262)
260 COG0039 Mdh Malate/lactate deh 64.9 13 0.00028 40.4 5.9 108 385-515 1-126 (313)
261 PLN02527 aspartate carbamoyltr 64.7 2.1E+02 0.0045 30.9 16.4 131 321-474 92-228 (306)
262 PRK07340 ornithine cyclodeamin 64.6 40 0.00086 35.9 9.4 103 382-510 123-229 (304)
263 PRK09490 metH B12-dependent me 64.4 47 0.001 42.4 11.2 120 315-478 441-572 (1229)
264 PRK15181 Vi polysaccharide bio 64.4 32 0.00069 36.5 8.7 105 378-499 9-141 (348)
265 PRK07877 hypothetical protein; 64.2 18 0.00039 43.4 7.4 101 380-499 103-229 (722)
266 PRK06928 pyrroline-5-carboxyla 64.0 50 0.0011 34.5 9.8 98 385-502 2-101 (277)
267 COG0240 GpsA Glycerol-3-phosph 64.0 12 0.00025 41.0 5.4 95 385-499 2-105 (329)
268 PRK01713 ornithine carbamoyltr 63.9 49 0.0011 36.1 10.1 131 322-472 98-233 (334)
269 PRK12570 N-acetylmuramic acid- 63.8 29 0.00063 37.1 8.2 37 464-502 127-165 (296)
270 cd01489 Uba2_SUMO Ubiquitin ac 63.3 9.9 0.00021 41.1 4.7 32 386-428 1-32 (312)
271 PRK06407 ornithine cyclodeamin 62.4 25 0.00054 37.5 7.4 104 383-511 116-225 (301)
272 PRK11790 D-3-phosphoglycerate 62.4 2.1E+02 0.0046 32.0 14.8 200 343-583 89-319 (409)
273 PRK06823 ornithine cyclodeamin 61.2 62 0.0013 34.9 10.2 106 383-513 127-237 (315)
274 TIGR01292 TRX_reduct thioredox 60.5 11 0.00023 38.0 4.1 31 386-428 2-32 (300)
275 COG1179 Dinucleotide-utilizing 60.5 8.5 0.00018 40.8 3.4 42 381-433 27-68 (263)
276 PRK08618 ornithine cyclodeamin 60.1 45 0.00097 35.7 8.9 101 383-509 126-232 (325)
277 TIGR02082 metH 5-methyltetrahy 59.6 1.1E+02 0.0023 39.1 13.1 144 315-504 425-589 (1178)
278 PRK05866 short chain dehydroge 59.5 35 0.00077 35.4 7.8 39 379-428 35-73 (293)
279 KOG1495 Lactate dehydrogenase 59.5 23 0.00049 38.4 6.3 130 380-532 16-169 (332)
280 PLN02688 pyrroline-5-carboxyla 59.4 19 0.00041 36.7 5.7 94 386-502 2-98 (266)
281 PRK05749 3-deoxy-D-manno-octul 59.2 30 0.00065 37.4 7.5 37 455-496 312-349 (425)
282 TIGR01181 dTDP_gluc_dehyt dTDP 59.0 45 0.00097 33.7 8.3 78 386-475 1-84 (317)
283 cd00300 LDH_like L-lactate deh 58.9 27 0.00059 37.0 6.9 123 387-526 1-141 (300)
284 COG1250 FadB 3-hydroxyacyl-CoA 58.9 2.5E+02 0.0054 30.7 14.2 140 456-614 101-249 (307)
285 PRK11883 protoporphyrinogen ox 58.5 6.4 0.00014 42.4 2.3 22 385-406 1-22 (451)
286 PRK12409 D-amino acid dehydrog 57.9 13 0.00028 40.0 4.5 33 385-429 2-34 (410)
287 PRK06046 alanine dehydrogenase 57.9 69 0.0015 34.4 9.8 103 383-511 128-236 (326)
288 PLN00112 malate dehydrogenase 57.8 38 0.00083 38.5 8.2 132 385-526 101-252 (444)
289 PRK06719 precorrin-2 dehydroge 57.7 15 0.00033 35.5 4.5 36 381-428 10-45 (157)
290 PF05834 Lycopene_cycl: Lycope 57.7 13 0.00028 40.2 4.4 35 387-431 2-36 (374)
291 PRK06138 short chain dehydroge 57.6 45 0.00098 32.7 7.8 77 381-475 2-92 (252)
292 KOG2304 3-hydroxyacyl-CoA dehy 57.4 9.3 0.0002 40.4 3.1 32 385-428 12-43 (298)
293 PRK06718 precorrin-2 dehydroge 57.1 15 0.00033 36.8 4.5 35 381-427 7-41 (202)
294 TIGR03169 Nterm_to_SelD pyridi 56.7 7.4 0.00016 41.1 2.3 36 386-430 1-36 (364)
295 COG1063 Tdh Threonine dehydrog 56.7 24 0.00053 38.0 6.3 97 359-473 144-247 (350)
296 PRK03803 murD UDP-N-acetylmura 56.4 46 0.00099 36.8 8.5 110 383-526 5-116 (448)
297 TIGR00465 ilvC ketol-acid redu 56.4 45 0.00098 36.0 8.2 24 382-405 1-24 (314)
298 PRK12829 short chain dehydroge 56.0 48 0.001 32.8 7.8 37 381-428 8-44 (264)
299 PRK13394 3-hydroxybutyrate deh 55.8 47 0.001 32.8 7.7 76 381-475 4-95 (262)
300 TIGR03376 glycerol3P_DH glycer 55.8 21 0.00045 39.0 5.5 20 386-405 1-20 (342)
301 PRK12828 short chain dehydroge 55.7 24 0.00052 34.0 5.5 36 381-428 4-40 (239)
302 PLN02240 UDP-glucose 4-epimera 55.6 30 0.00065 36.1 6.6 107 381-499 2-132 (352)
303 PF03446 NAD_binding_2: NAD bi 55.5 13 0.00027 35.6 3.5 104 385-515 2-108 (163)
304 TIGR02028 ChlP geranylgeranyl 55.4 13 0.00029 40.4 4.1 31 386-428 2-32 (398)
305 cd05007 SIS_Etherase N-acetylm 55.2 57 0.0012 34.1 8.5 37 464-502 118-156 (257)
306 PRK13512 coenzyme A disulfide 55.2 12 0.00025 41.4 3.6 33 386-428 3-35 (438)
307 cd01490 Ube1_repeat2 Ubiquitin 54.9 20 0.00044 40.6 5.4 37 386-428 1-37 (435)
308 TIGR01283 nifE nitrogenase mol 54.9 32 0.00069 38.6 7.0 84 372-471 314-402 (456)
309 PF03435 Saccharop_dh: Sacchar 54.8 7 0.00015 42.2 1.8 88 387-496 1-96 (386)
310 PRK05993 short chain dehydroge 54.8 33 0.00071 34.9 6.5 32 385-428 5-37 (277)
311 TIGR01470 cysG_Nterm siroheme 54.6 18 0.00038 36.5 4.5 36 381-428 6-41 (205)
312 PF13454 NAD_binding_9: FAD-NA 54.5 13 0.00028 35.3 3.4 36 388-430 1-36 (156)
313 PRK06184 hypothetical protein; 54.5 16 0.00034 40.9 4.6 35 383-429 2-36 (502)
314 TIGR02023 BchP-ChlP geranylger 54.3 15 0.00032 39.6 4.2 31 386-428 2-32 (388)
315 cd05006 SIS_GmhA Phosphoheptos 54.3 75 0.0016 30.6 8.6 22 464-487 101-122 (177)
316 PRK07236 hypothetical protein; 54.1 18 0.0004 38.7 4.8 24 382-405 4-27 (386)
317 COG0499 SAM1 S-adenosylhomocys 53.8 61 0.0013 36.5 8.6 120 358-511 186-306 (420)
318 PRK11199 tyrA bifunctional cho 53.5 68 0.0015 35.2 9.1 33 384-428 98-131 (374)
319 PF01266 DAO: FAD dependent ox 53.1 21 0.00045 36.4 4.8 31 386-428 1-31 (358)
320 PRK01438 murD UDP-N-acetylmura 52.9 21 0.00045 39.8 5.1 29 377-405 9-37 (480)
321 COG1052 LdhA Lactate dehydroge 52.8 1E+02 0.0022 33.6 10.1 93 377-499 139-236 (324)
322 TIGR01505 tartro_sem_red 2-hyd 52.8 49 0.0011 34.3 7.6 31 386-428 1-31 (291)
323 TIGR00441 gmhA phosphoheptose 52.6 90 0.0019 29.8 8.7 37 464-502 79-117 (154)
324 PRK06847 hypothetical protein; 52.2 19 0.00041 38.0 4.5 22 384-405 4-25 (375)
325 PRK06392 homoserine dehydrogen 52.2 58 0.0013 35.4 8.2 82 386-473 2-90 (326)
326 TIGR03026 NDP-sugDHase nucleot 52.2 49 0.0011 36.4 7.8 31 386-428 2-32 (411)
327 PRK03369 murD UDP-N-acetylmura 51.9 87 0.0019 35.5 9.9 89 382-495 10-98 (488)
328 PRK09564 coenzyme A disulfide 51.8 21 0.00046 38.9 4.9 37 385-431 1-37 (444)
329 PRK04965 NADH:flavorubredoxin 51.8 14 0.00031 39.5 3.6 35 385-429 3-37 (377)
330 PRK09987 dTDP-4-dehydrorhamnos 51.7 59 0.0013 33.8 8.0 86 386-499 2-104 (299)
331 PRK12771 putative glutamate sy 50.8 30 0.00064 39.7 6.1 36 381-428 134-169 (564)
332 PRK07819 3-hydroxybutyryl-CoA 50.8 20 0.00044 37.7 4.4 32 385-428 6-37 (286)
333 TIGR01082 murC UDP-N-acetylmur 50.8 31 0.00067 38.2 6.0 105 386-526 1-107 (448)
334 TIGR01316 gltA glutamate synth 50.7 22 0.00048 39.5 4.9 36 381-428 130-165 (449)
335 TIGR03693 ocin_ThiF_like putat 50.7 75 0.0016 37.9 9.2 64 344-430 101-164 (637)
336 PRK13937 phosphoheptose isomer 50.6 58 0.0012 32.2 7.3 22 464-487 106-127 (188)
337 PRK07233 hypothetical protein; 50.5 17 0.00038 38.8 3.9 31 386-428 1-31 (434)
338 PRK09126 hypothetical protein; 50.5 19 0.00042 38.2 4.2 33 384-428 3-35 (392)
339 PRK07831 short chain dehydroge 50.3 52 0.0011 32.8 7.1 36 381-428 14-51 (262)
340 PLN02695 GDP-D-mannose-3',5'-e 50.3 54 0.0012 35.4 7.6 97 383-499 20-137 (370)
341 PRK09186 flagellin modificatio 50.2 49 0.0011 32.6 6.8 35 382-428 2-37 (256)
342 PRK08163 salicylate hydroxylas 50.2 20 0.00044 38.2 4.3 22 384-405 4-25 (396)
343 PRK02842 light-independent pro 50.2 35 0.00077 38.0 6.4 87 371-472 277-368 (427)
344 COG2423 Predicted ornithine cy 50.2 91 0.002 34.2 9.3 121 367-514 115-241 (330)
345 PRK07417 arogenate dehydrogena 50.1 75 0.0016 33.0 8.4 31 386-428 2-32 (279)
346 PRK07523 gluconate 5-dehydroge 50.0 60 0.0013 32.2 7.4 36 381-428 7-43 (255)
347 PRK08219 short chain dehydroge 49.9 79 0.0017 30.4 8.0 71 385-475 4-82 (227)
348 PRK05479 ketol-acid reductoiso 49.6 64 0.0014 35.3 8.0 25 381-405 14-38 (330)
349 PRK06182 short chain dehydroge 49.5 51 0.0011 33.2 6.9 74 383-475 2-85 (273)
350 PRK11154 fadJ multifunctional 49.3 2.3E+02 0.005 34.0 13.2 106 458-572 410-523 (708)
351 PRK00683 murD UDP-N-acetylmura 49.0 85 0.0018 34.6 9.0 114 383-538 2-115 (418)
352 PRK07364 2-octaprenyl-6-methox 48.9 19 0.00042 38.6 4.0 33 384-428 18-50 (415)
353 PF06690 DUF1188: Protein of u 48.9 28 0.0006 36.9 4.9 145 378-577 38-187 (252)
354 PRK09466 metL bifunctional asp 48.7 54 0.0012 40.0 8.0 108 383-497 457-571 (810)
355 KOG2012 Ubiquitin activating e 48.6 12 0.00027 45.3 2.6 160 315-522 369-552 (1013)
356 cd01493 APPBP1_RUB Ubiquitin a 48.6 20 0.00043 40.4 4.1 37 381-428 17-53 (425)
357 TIGR01179 galE UDP-glucose-4-e 48.1 83 0.0018 31.8 8.2 97 386-497 1-119 (328)
358 PRK06475 salicylate hydroxylas 48.0 21 0.00044 38.6 4.0 21 385-405 3-23 (400)
359 PLN02172 flavin-containing mon 47.9 25 0.00054 39.6 4.8 25 381-405 7-31 (461)
360 PTZ00245 ubiquitin activating 47.8 18 0.00039 38.8 3.4 73 380-470 22-98 (287)
361 PRK12810 gltD glutamate syntha 47.6 25 0.00055 39.3 4.8 34 383-428 142-175 (471)
362 PRK01368 murD UDP-N-acetylmura 47.6 70 0.0015 36.0 8.2 107 383-526 5-112 (454)
363 PRK05441 murQ N-acetylmuramic 47.3 40 0.00086 36.1 6.0 38 464-503 131-170 (299)
364 PRK07251 pyridine nucleotide-d 47.2 25 0.00053 38.6 4.5 34 384-429 3-36 (438)
365 PRK07424 bifunctional sterol d 47.2 30 0.00065 38.7 5.2 56 347-428 156-211 (406)
366 PRK04176 ribulose-1,5-biphosph 47.1 24 0.00052 36.6 4.2 34 384-429 25-58 (257)
367 PRK12769 putative oxidoreducta 47.0 24 0.00053 41.2 4.7 35 382-428 325-359 (654)
368 PLN02427 UDP-apiose/xylose syn 46.9 66 0.0014 34.5 7.6 84 375-475 5-97 (386)
369 PTZ00318 NADH dehydrogenase-li 46.9 16 0.00035 40.1 3.1 36 381-428 7-42 (424)
370 COG2072 TrkA Predicted flavopr 46.8 26 0.00057 39.3 4.7 46 518-563 134-187 (443)
371 cd07205 Pat_PNPLA6_PNPLA7_NTE1 46.7 88 0.0019 29.9 7.7 46 363-419 10-55 (175)
372 cd08281 liver_ADH_like1 Zinc-d 46.6 79 0.0017 33.7 8.1 34 383-427 191-224 (371)
373 COG0644 FixC Dehydrogenases (f 46.6 25 0.00055 38.2 4.5 35 385-431 4-38 (396)
374 KOG2018 Predicted dinucleotide 46.5 23 0.0005 39.0 4.1 40 380-430 70-109 (430)
375 PLN02268 probable polyamine ox 46.5 7.6 0.00016 42.2 0.5 20 386-405 2-21 (435)
376 PRK05732 2-octaprenyl-6-methox 46.3 28 0.00061 36.9 4.7 37 383-428 2-38 (395)
377 PF13580 SIS_2: SIS domain; PD 46.3 16 0.00035 34.2 2.6 107 362-487 18-124 (138)
378 PLN02676 polyamine oxidase 46.2 53 0.0012 37.2 7.1 23 383-405 25-47 (487)
379 PRK00048 dihydrodipicolinate r 46.2 1E+02 0.0023 31.9 8.7 88 385-497 2-90 (257)
380 TIGR01790 carotene-cycl lycope 45.8 24 0.00051 37.6 4.1 31 387-429 2-32 (388)
381 PRK06841 short chain dehydroge 45.8 41 0.0009 33.2 5.5 36 381-428 12-48 (255)
382 COG3288 PntA NAD/NADP transhyd 45.8 49 0.0011 36.5 6.3 50 455-509 237-292 (356)
383 PRK00414 gmhA phosphoheptose i 45.7 1E+02 0.0023 30.7 8.3 104 382-500 42-147 (192)
384 TIGR03088 stp2 sugar transfera 45.5 1.5E+02 0.0033 30.9 9.9 36 456-496 266-301 (374)
385 PRK04663 murD UDP-N-acetylmura 45.4 87 0.0019 34.7 8.5 112 382-526 4-116 (438)
386 PRK08507 prephenate dehydrogen 45.4 99 0.0021 32.0 8.4 33 386-428 2-34 (275)
387 PRK11259 solA N-methyltryptoph 45.2 28 0.0006 36.7 4.4 34 384-429 3-36 (376)
388 PRK07774 short chain dehydroge 45.2 82 0.0018 30.9 7.4 36 381-428 3-39 (250)
389 PRK12491 pyrroline-5-carboxyla 45.1 53 0.0011 34.5 6.4 107 385-517 3-110 (272)
390 TIGR00274 N-acetylmuramic acid 45.1 39 0.00084 36.1 5.5 38 464-503 126-165 (291)
391 PRK06416 dihydrolipoamide dehy 45.0 25 0.00054 38.8 4.2 33 385-429 5-37 (462)
392 COG0673 MviM Predicted dehydro 45.0 60 0.0013 33.8 6.8 94 384-496 3-102 (342)
393 PRK07478 short chain dehydroge 45.0 74 0.0016 31.5 7.2 37 381-428 3-39 (254)
394 PRK07067 sorbitol dehydrogenas 45.0 26 0.00056 34.8 4.0 76 381-475 3-91 (257)
395 PRK07589 ornithine cyclodeamin 44.8 2.7E+02 0.0058 30.7 11.9 104 384-512 129-239 (346)
396 PF02684 LpxB: Lipid-A-disacch 44.7 48 0.001 36.8 6.2 68 454-533 72-148 (373)
397 TIGR00031 UDP-GALP_mutase UDP- 44.7 27 0.00059 38.6 4.4 31 386-428 3-33 (377)
398 PRK10892 D-arabinose 5-phospha 44.7 1.2E+02 0.0026 32.1 9.0 83 385-502 48-132 (326)
399 PRK11559 garR tartronate semia 44.6 92 0.002 32.3 8.1 32 385-428 3-34 (296)
400 cd04951 GT1_WbdM_like This fam 44.6 2E+02 0.0043 29.2 10.3 37 455-496 255-291 (360)
401 PRK06753 hypothetical protein; 44.6 27 0.00058 36.9 4.2 20 386-405 2-21 (373)
402 PRK12266 glpD glycerol-3-phosp 44.5 26 0.00055 39.8 4.3 33 385-429 7-39 (508)
403 COG5322 Predicted dehydrogenas 44.5 32 0.00068 37.4 4.6 50 356-405 139-189 (351)
404 PRK12939 short chain dehydroge 44.5 95 0.0021 30.3 7.7 36 381-428 4-40 (250)
405 PLN00093 geranylgeranyl diphos 44.5 26 0.00056 39.3 4.2 21 385-405 40-60 (450)
406 PRK07045 putative monooxygenas 44.5 28 0.0006 37.2 4.3 21 385-405 6-26 (388)
407 PRK03515 ornithine carbamoyltr 44.3 1.7E+02 0.0037 32.1 10.3 133 321-473 96-234 (336)
408 PRK12826 3-ketoacyl-(acyl-carr 44.3 84 0.0018 30.6 7.3 36 381-428 3-39 (251)
409 TIGR01373 soxB sarcosine oxida 44.2 35 0.00075 36.7 5.0 38 383-430 29-66 (407)
410 TIGR02032 GG-red-SF geranylger 44.2 28 0.00061 34.7 4.1 33 386-430 2-34 (295)
411 TIGR02440 FadJ fatty oxidation 44.1 5.9E+02 0.013 30.6 15.4 156 456-633 403-567 (699)
412 PRK13301 putative L-aspartate 44.0 46 0.001 35.6 5.8 117 385-525 3-122 (267)
413 PF13450 NAD_binding_8: NAD(P) 44.0 35 0.00075 28.4 3.9 31 389-431 1-31 (68)
414 PRK12779 putative bifunctional 43.8 31 0.00066 42.6 5.0 39 382-432 304-346 (944)
415 PRK08339 short chain dehydroge 43.7 97 0.0021 31.4 7.9 37 380-428 4-41 (263)
416 COG0654 UbiH 2-polyprenyl-6-me 43.3 30 0.00066 37.3 4.4 33 384-428 2-34 (387)
417 PRK07608 ubiquinone biosynthes 43.1 28 0.0006 37.0 4.0 32 385-428 6-37 (388)
418 PRK08849 2-octaprenyl-3-methyl 43.1 31 0.00068 37.0 4.5 33 384-428 3-35 (384)
419 TIGR03736 PRTRC_ThiF PRTRC sys 43.0 36 0.00079 35.7 4.8 46 383-429 10-55 (244)
420 PRK07890 short chain dehydroge 42.9 77 0.0017 31.2 6.9 36 382-428 3-38 (258)
421 PRK06171 sorbitol-6-phosphate 42.7 1.2E+02 0.0026 30.3 8.3 76 381-474 6-87 (266)
422 TIGR01377 soxA_mon sarcosine o 42.5 31 0.00067 36.4 4.3 33 386-430 2-34 (380)
423 COG0771 MurD UDP-N-acetylmuram 42.5 1.5E+02 0.0032 34.0 9.7 117 381-538 4-123 (448)
424 PRK14806 bifunctional cyclohex 42.3 66 0.0014 38.0 7.3 93 385-499 4-97 (735)
425 PRK11749 dihydropyrimidine deh 42.3 33 0.00073 38.0 4.7 34 383-428 139-172 (457)
426 PRK14852 hypothetical protein; 42.0 25 0.00054 43.6 3.9 38 380-428 328-365 (989)
427 PRK11730 fadB multifunctional 41.8 93 0.002 37.3 8.5 107 458-573 413-527 (715)
428 PRK06124 gluconate 5-dehydroge 41.8 83 0.0018 31.1 7.0 39 379-428 6-44 (256)
429 PRK12770 putative glutamate sy 41.6 41 0.00088 35.9 5.0 34 383-428 17-50 (352)
430 TIGR03589 PseB UDP-N-acetylglu 41.6 71 0.0015 33.6 6.8 106 382-499 2-125 (324)
431 PLN02657 3,8-divinyl protochlo 41.6 1.5E+02 0.0032 32.5 9.4 107 377-496 53-179 (390)
432 TIGR00658 orni_carb_tr ornithi 41.4 2.1E+02 0.0045 30.8 10.3 129 322-472 91-224 (304)
433 TIGR01984 UbiH 2-polyprenyl-6- 41.3 27 0.00059 36.9 3.7 19 387-405 2-20 (382)
434 PLN02653 GDP-mannose 4,6-dehyd 41.2 1.1E+02 0.0024 32.0 8.1 82 381-474 3-93 (340)
435 PLN02463 lycopene beta cyclase 41.1 31 0.00066 38.9 4.2 32 385-428 29-60 (447)
436 TIGR02053 MerA mercuric reduct 41.1 32 0.00069 38.1 4.3 30 387-428 3-32 (463)
437 PRK01747 mnmC bifunctional tRN 41.0 34 0.00073 40.0 4.6 33 385-429 261-293 (662)
438 PRK08773 2-octaprenyl-3-methyl 41.0 30 0.00066 37.0 4.0 34 384-429 6-39 (392)
439 PRK08220 2,3-dihydroxybenzoate 40.9 1.5E+02 0.0033 29.0 8.6 37 381-429 5-42 (252)
440 PRK12778 putative bifunctional 40.8 40 0.00086 40.2 5.2 35 382-428 429-463 (752)
441 PRK12831 putative oxidoreducta 40.8 36 0.00077 38.3 4.6 34 383-428 139-172 (464)
442 PRK08013 oxidoreductase; Provi 40.8 34 0.00075 37.0 4.4 33 384-428 3-35 (400)
443 PRK10157 putative oxidoreducta 40.7 31 0.00068 38.1 4.1 21 385-405 6-26 (428)
444 cd01968 Nitrogenase_NifE_I Nit 40.4 44 0.00096 36.8 5.2 85 373-473 276-365 (410)
445 PRK06398 aldose dehydrogenase; 40.4 1.6E+02 0.0035 29.6 8.8 74 381-474 3-82 (258)
446 PRK11101 glpA sn-glycerol-3-ph 40.2 34 0.00074 39.2 4.4 33 384-428 6-38 (546)
447 PRK09853 putative selenate red 40.2 35 0.00075 42.6 4.7 35 382-428 537-571 (1019)
448 TIGR01789 lycopene_cycl lycope 40.1 42 0.00091 36.5 4.9 36 387-432 2-37 (370)
449 PRK10262 thioredoxin reductase 40.0 29 0.00064 36.2 3.6 24 382-405 4-27 (321)
450 PRK05653 fabG 3-ketoacyl-(acyl 40.0 1E+02 0.0022 29.7 7.2 35 382-428 3-38 (246)
451 PRK08244 hypothetical protein; 40.0 34 0.00074 38.2 4.3 21 385-405 3-23 (493)
452 PRK07326 short chain dehydroge 39.9 1E+02 0.0023 29.9 7.2 35 382-428 4-39 (237)
453 PRK05976 dihydrolipoamide dehy 39.9 37 0.0008 37.8 4.5 33 384-428 4-36 (472)
454 CHL00076 chlB photochlorophyll 39.8 50 0.0011 38.0 5.7 79 380-472 301-382 (513)
455 PRK09242 tropinone reductase; 39.8 1.2E+02 0.0027 30.0 7.8 37 381-428 6-42 (257)
456 PRK08294 phenol 2-monooxygenas 39.7 31 0.00067 40.5 4.1 43 383-436 31-74 (634)
457 cd05017 SIS_PGI_PMI_1 The memb 39.7 1.4E+02 0.003 27.0 7.5 34 464-500 43-78 (119)
458 PRK08020 ubiF 2-octaprenyl-3-m 39.6 32 0.0007 36.6 3.9 33 384-428 5-37 (391)
459 TIGR01350 lipoamide_DH dihydro 39.4 36 0.00078 37.4 4.3 30 386-427 3-32 (461)
460 KOG0455 Homoserine dehydrogena 39.4 1.5E+02 0.0033 32.1 8.6 109 384-501 3-120 (364)
461 PF04320 DUF469: Protein with 39.4 24 0.00052 32.7 2.4 32 305-337 27-61 (101)
462 PRK06292 dihydrolipoamide dehy 39.3 39 0.00085 37.2 4.6 33 384-428 3-35 (460)
463 PRK12814 putative NADPH-depend 39.3 39 0.00085 39.7 4.8 34 383-428 192-225 (652)
464 PRK14694 putative mercuric red 39.3 40 0.00086 37.6 4.7 34 383-428 5-38 (468)
465 PRK06912 acoL dihydrolipoamide 39.3 36 0.00078 37.8 4.3 31 386-428 2-32 (458)
466 PRK00711 D-amino acid dehydrog 39.2 37 0.00081 36.4 4.3 31 386-428 2-32 (416)
467 PRK06185 hypothetical protein; 39.1 36 0.00077 36.5 4.2 34 384-429 6-39 (407)
468 PRK07588 hypothetical protein; 39.1 37 0.00079 36.4 4.2 21 385-405 1-21 (391)
469 PRK13369 glycerol-3-phosphate 39.0 33 0.00072 38.7 4.1 33 385-429 7-39 (502)
470 TIGR01988 Ubi-OHases Ubiquinon 39.0 34 0.00073 35.9 3.9 31 387-429 2-32 (385)
471 PLN02172 flavin-containing mon 38.9 39 0.00084 38.2 4.5 36 382-429 202-237 (461)
472 PF01946 Thi4: Thi4 family; PD 38.9 45 0.00098 35.0 4.6 36 384-431 17-52 (230)
473 cd05188 MDR Medium chain reduc 38.9 82 0.0018 30.6 6.3 45 372-428 123-167 (271)
474 cd03819 GT1_WavL_like This fam 38.8 2.4E+02 0.0052 28.7 9.9 38 455-496 256-293 (355)
475 cd01974 Nitrogenase_MoFe_beta 38.8 37 0.00081 37.8 4.4 102 374-502 293-405 (435)
476 TIGR00292 thiazole biosynthesi 38.8 39 0.00085 35.1 4.2 37 383-431 20-56 (254)
477 cd03813 GT1_like_3 This family 38.7 1.6E+02 0.0034 32.9 9.2 37 455-496 363-399 (475)
478 cd01976 Nitrogenase_MoFe_alpha 38.7 78 0.0017 35.3 6.8 87 371-473 287-378 (421)
479 PRK12416 protoporphyrinogen ox 38.7 20 0.00043 39.5 2.2 47 385-431 2-55 (463)
480 PRK05714 2-octaprenyl-3-methyl 38.7 31 0.00066 37.1 3.6 32 385-428 3-34 (405)
481 TIGR02918 accessory Sec system 38.5 1.8E+02 0.004 33.3 9.8 36 456-496 386-421 (500)
482 PRK08010 pyridine nucleotide-d 38.4 39 0.00084 37.1 4.4 32 385-428 4-35 (441)
483 PRK12562 ornithine carbamoyltr 38.1 2.8E+02 0.006 30.6 10.7 137 315-472 91-233 (334)
484 PRK11728 hydroxyglutarate oxid 38.1 37 0.00079 36.6 4.1 34 385-428 3-36 (393)
485 PRK08243 4-hydroxybenzoate 3-m 38.0 41 0.00089 36.2 4.4 22 384-405 2-23 (392)
486 COG1748 LYS9 Saccharopine dehy 37.9 55 0.0012 36.7 5.5 85 385-488 2-90 (389)
487 TIGR01408 Ube1 ubiquitin-activ 37.9 27 0.00059 43.4 3.4 39 380-429 20-58 (1008)
488 PRK09897 hypothetical protein; 37.8 41 0.00089 39.0 4.6 33 386-428 3-35 (534)
489 PRK08850 2-octaprenyl-6-methox 37.8 41 0.00089 36.3 4.4 33 384-428 4-36 (405)
490 PF02558 ApbA: Ketopantoate re 37.7 49 0.0011 30.5 4.3 31 387-429 1-31 (151)
491 PLN02568 polyamine oxidase 37.7 21 0.00046 41.1 2.3 24 383-406 4-27 (539)
492 PRK05875 short chain dehydroge 37.6 1.3E+02 0.0028 30.2 7.6 36 381-428 4-40 (276)
493 PRK02102 ornithine carbamoyltr 37.6 3E+02 0.0065 30.2 10.9 130 322-472 98-232 (331)
494 PRK11445 putative oxidoreducta 37.4 29 0.00064 36.9 3.2 20 386-405 3-22 (351)
495 COG1252 Ndh NADH dehydrogenase 37.4 28 0.00061 39.1 3.1 35 384-428 3-37 (405)
496 TIGR03364 HpnW_proposed FAD de 37.2 40 0.00087 35.6 4.1 31 386-428 2-32 (365)
497 PRK07535 methyltetrahydrofolat 37.2 1.1E+02 0.0023 32.3 7.2 47 315-364 79-130 (261)
498 cd04955 GT1_like_6 This family 37.2 2.1E+02 0.0045 29.1 9.1 30 465-496 268-297 (363)
499 PRK06200 2,3-dihydroxy-2,3-dih 37.1 44 0.00095 33.4 4.2 37 381-428 3-39 (263)
500 PLN02350 phosphogluconate dehy 37.0 1E+02 0.0023 35.5 7.6 98 385-502 7-110 (493)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.7e-222 Score=1765.98 Aligned_cols=560 Identities=63% Similarity=1.043 Sum_probs=547.2
Q ss_pred ccCCCcccCCCCCccc-ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhccCCchhH
Q 006454 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (644)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (644)
.++++..+..+...+| ..+.++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3444444444444555 667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEe
Q 006454 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (644)
Q Consensus 161 y~~L~~L~~rNe~LFY~ll~~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVT 240 (644)
|+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeecCCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHH
Q 006454 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (644)
Q Consensus 241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~A 320 (644)
||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||+|+|+||+|++|+|||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceecccCCCCcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 006454 321 VKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 400 (644)
Q Consensus 321 v~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA 400 (644)
|+++|||++||| ||||+++|||++|+|||.+||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||
T Consensus 248 v~~~yG~~~lIq-FEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA 326 (582)
T KOG1257|consen 248 VVQRYGPNTLIQ-FEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIA 326 (582)
T ss_pred HHHHhCcceEEE-ehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCH
Q 006454 401 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTK 480 (644)
Q Consensus 401 ~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fte 480 (644)
+||+.+|+++ |+|+|||++||||+|++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+|||
T Consensus 327 ~l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fte 405 (582)
T KOG1257|consen 327 NLIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTE 405 (582)
T ss_pred HHHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCH
Confidence 9999999996 999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhC
Q 006454 481 EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSG 560 (644)
Q Consensus 481 evv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~ 560 (644)
||||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|+
T Consensus 406 evl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg 485 (582)
T KOG1257|consen 406 EVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSG 485 (582)
T ss_pred HHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCC
Q 006454 561 AIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 640 (644)
Q Consensus 561 a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y 640 (644)
+++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++||++|+|+..|+|+|+.+|++++||+|+|
T Consensus 486 ~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y 565 (582)
T KOG1257|consen 486 ARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEY 565 (582)
T ss_pred CccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 006454 641 RTY 643 (644)
Q Consensus 641 ~~~ 643 (644)
+++
T Consensus 566 ~~~ 568 (582)
T KOG1257|consen 566 RNS 568 (582)
T ss_pred ccc
Confidence 985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-210 Score=1705.32 Aligned_cols=540 Identities=50% Similarity=0.857 Sum_probs=530.6
Q ss_pred ccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhccCCchhHHHHHHHHHHhhHHHHHHHh
Q 006454 100 SVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLL 179 (644)
Q Consensus 100 ~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll 179 (644)
+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccccc
Q 006454 180 IDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIP 259 (644)
Q Consensus 180 ~~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 259 (644)
++|+|||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCC
Q 006454 260 VGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFAN 339 (644)
Q Consensus 260 iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~ 339 (644)
|||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++||+|+||||+||+.+| |+++|| ||||++
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~-~EDf~~ 250 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQ-FEDFAQ 250 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEe-hhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999 999999
Q ss_pred CcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 340 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 340 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
+|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhccccCCC---------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 490 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---------~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 490 (644)
++||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+||||||++|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999976543 6899999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHH
Q 006454 491 EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLL 570 (644)
Q Consensus 491 erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~l 570 (644)
||||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 006454 571 AAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 644 (644)
Q Consensus 571 aAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 644 (644)
+||++||+++++++++++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|.|+||+
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999985 67889999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=7.3e-210 Score=1705.77 Aligned_cols=543 Identities=74% Similarity=1.190 Sum_probs=535.8
Q ss_pred cccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhccCCchhHHHHHHHHHHhhHHHHHHHhh
Q 006454 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (644)
Q Consensus 101 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ll~ 180 (644)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccccch
Q 006454 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (644)
Q Consensus 181 ~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 260 (644)
+|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCCC
Q 006454 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANH 340 (644)
Q Consensus 261 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~ 340 (644)
||++|||+||||||++|||||||+|||||+||+||+||||||+|++|+||++|+||||++|+.+|||+++|| ||||+++
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~-~EDf~~~ 277 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQ-FEDFANK 277 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEe-hhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006454 341 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 420 (644)
Q Consensus 341 nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~ 420 (644)
|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++
T Consensus 278 ~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~ 357 (581)
T PLN03129 278 NAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARK 357 (581)
T ss_pred cHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766999999999
Q ss_pred eEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 421 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 421 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
+||+||++|||+++|.++|+++|++||++.++.++|+|+|+.+|||||||+|+++|+||||||++|+++|+|||||||||
T Consensus 358 ~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSN 437 (581)
T PLN03129 358 RIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSN 437 (581)
T ss_pred cEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 99999999999999976699999999998777899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 006454 501 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 580 (644)
Q Consensus 501 Pts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 580 (644)
||++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||+++
T Consensus 438 Pt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 438 PTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred CCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 006454 581 TQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 644 (644)
Q Consensus 581 ~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P~Y~~~~ 644 (644)
+++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|+++.||+|+|++|+
T Consensus 518 ~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 518 TEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred CcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 9999999999999999999999999999999999999987777899999999999999999985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.4e-208 Score=1685.29 Aligned_cols=539 Identities=49% Similarity=0.846 Sum_probs=526.5
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHHhccCCchhHHHHHHHHHHhhHHHHHH
Q 006454 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (644)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFY~ 177 (644)
..+..+|+++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcccc
Q 006454 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (644)
Q Consensus 178 ll~~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 257 (644)
+|++|+|||||||||||||+||++||++||+|||||+|++|||+|.++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccC
Q 006454 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDF 337 (644)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf 337 (644)
|||||++|||+||||||++|||||||||||||+||+||+||||||+|++|+|||+|+||||+||+.+| |+++|| ||||
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq-~EDf 250 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQ-FEDF 250 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEe-hhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999 9999
Q ss_pred CCCcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 006454 338 ANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 417 (644)
Q Consensus 338 ~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~ee 417 (644)
+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+||
T Consensus 251 ~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~ee 329 (559)
T PTZ00317 251 SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREE 329 (559)
T ss_pred CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 5999999
Q ss_pred hcCeEEEEccCCcccCCCccCCchhhhhhcccc--CC---CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCC
Q 006454 418 TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEK 492 (644)
Q Consensus 418 Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~---~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~er 492 (644)
|++|||+||++|||+++|.++|+++|++|||+. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+|
T Consensus 330 A~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~r 409 (559)
T PTZ00317 330 ALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVER 409 (559)
T ss_pred hcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 999999999999999999766999999999974 33 5799999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHH
Q 006454 493 PIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 572 (644)
Q Consensus 493 PIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laA 572 (644)
||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++|
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 006454 573 AEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR--LPP-PKDLVKYAESCMYSPA 639 (644)
Q Consensus 573 A~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~--~~~-p~dl~~~i~~~m~~P~ 639 (644)
|++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 490 A~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 490 AASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.4e-118 Score=948.02 Aligned_cols=427 Identities=36% Similarity=0.531 Sum_probs=382.9
Q ss_pred ccCHHHHHHHHHHHHhccCC-chhHHHHHHHHHHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 006454 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (644)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~rNe~LFY~ll~~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis 215 (644)
++|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999887 99999999 899999999999999999999999999999999998888875
Q ss_pred cCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CcccccchhhhhhHhhhcCCCCCceeeeeecCCCCccccccC
Q 006454 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294 (644)
Q Consensus 216 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~D 294 (644)
.++.++++|||||||+|||||||+| ..||+|||||++|||+||||| +|||+||+|||||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3455666999999999999999999 679999999999999999999 9999999999987
Q ss_pred cccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHH
Q 006454 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISA 374 (644)
Q Consensus 295 plYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~A 374 (644)
+++||++++++| |.+.+| ||||..-|+.+.+.|||.+||||||||||||+|+|||||||
T Consensus 131 -------------------i~~~Vkal~p~F-gginLe-di~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llna 189 (432)
T COG0281 131 -------------------IIEFVKALEPTF-GGINLE-DIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNA 189 (432)
T ss_pred -------------------HHHHHHHhhhcC-CCccee-ecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHH
Confidence 899999999999 555555 55554444445566777899999999999999999999999
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc-CCchhhhhhcc-ccCC
Q 006454 375 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHEP 452 (644)
Q Consensus 375 lr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~-~L~~~k~~fA~-~~~~ 452 (644)
||++|++|+|+||||+|||+||+|||+||+.+|++ +++||+||++|+|+++|.+ .++++|..+|. +...
T Consensus 190 lk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~ 260 (432)
T COG0281 190 LKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE 260 (432)
T ss_pred HHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhcc
Confidence 99999999999999999999999999999987543 2899999999999999976 36778878885 4444
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcc
Q 006454 453 VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFE 532 (644)
Q Consensus 453 ~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~ 532 (644)
..+ .+++ .+||||||+|++ |+||+|+|++|++ +|||||||||| +|++||||.+|++|++|+|||||
T Consensus 261 ~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma~---~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs----- 326 (432)
T COG0281 261 RTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMAK---HPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS----- 326 (432)
T ss_pred ccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhcc---CCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC-----
Confidence 442 3444 469999999999 8999999999974 59999999999 99999999999999999999975
Q ss_pred cCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHH
Q 006454 533 YGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKA 612 (644)
Q Consensus 533 ~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A 612 (644)
++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.. .+.|+|++++.|.+|. ||.||+++|
T Consensus 327 -----d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA 399 (432)
T COG0281 327 -----DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAA 399 (432)
T ss_pred -----CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHH
Confidence 566699999999999999999999999999999999999999987666 7899999999999998 999999999
Q ss_pred HHcCCCCCCCCch-hHHHHHHhCCcccCCCCCC
Q 006454 613 YELGLATRLPPPK-DLVKYAESCMYSPAYRTYR 644 (644)
Q Consensus 613 ~~~GlA~~~~~p~-dl~~~i~~~m~~P~Y~~~~ 644 (644)
.++|+|+..+... ++.++++..+|.|.|.++.
T Consensus 400 ~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 400 MEEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HHcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 9999999755544 6899999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=6.4e-110 Score=942.66 Aligned_cols=370 Identities=31% Similarity=0.533 Sum_probs=336.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcc-cccchhh
Q 006454 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (644)
Q Consensus 184 ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (644)
.+.|.++|||||+++|++ |+++|+++| + |+.|.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~-------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF-R-------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh-h-------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 346999999999999999 899999996 3 455556799999999999999999997 9999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcH
Q 006454 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNA 342 (644)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nA 342 (644)
++|||+||||| ++|+|||| +|| ++|| |||++++++||. || ||||++|||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~-lED~~~p~~ 145 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---IN-LEDIKAPEC 145 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ce-eeeccCchH
Confidence 99999999999 56666666 577 7888 999999999977 99 999999999
Q ss_pred HHHHHHHcC--CCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 006454 343 FDLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 420 (644)
Q Consensus 343 f~lL~ryr~--~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~ 420 (644)
|++|+|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+. .|+++|
T Consensus 146 f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~---- 216 (764)
T PRK12861 146 FTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE---- 216 (764)
T ss_pred HHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----
Confidence 999999998 699999999999999999999999999999999999999999999999999975 499754
Q ss_pred eEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 421 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 421 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
+||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 217 ~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsN 289 (764)
T PRK12861 217 NIWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALAN 289 (764)
T ss_pred hEEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCC
Confidence 999999999999999766999999999985 45799999998 899999998 8999999999997 5999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 006454 501 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 580 (644)
Q Consensus 501 Pts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 580 (644)
|| ||||||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 290 Pt--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~ 356 (764)
T PRK12861 290 PT--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLA 356 (764)
T ss_pred CC--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhC
Confidence 99 8999999987 9999999997 699999999999999999999999999999999999999999999
Q ss_pred CccCCC------------CCccc--CCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 006454 581 TQENFD------------KGLLY--PPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 633 (644)
Q Consensus 581 ~~e~~~------------~g~l~--P~~~~ir~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 633 (644)
++++++ .|.+| |+..+ ++||..||.||+++|+++|+|+. |. +|+.+|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 357 EEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred CcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 987533 45555 95555 78999999999999999999985 32 466666544
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=4.4e-109 Score=940.05 Aligned_cols=369 Identities=29% Similarity=0.486 Sum_probs=338.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCcc-cccchhh
Q 006454 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (644)
Q Consensus 184 ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (644)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 346999999999999999 889999888 4667778999999999999999999996 9999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCC-ccceecccCCCCc
Q 006454 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQVFEDFANHN 341 (644)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~-~lIq~fEDf~~~n 341 (644)
++|||+||||| ++|| ||||+ || ||||++|+..| |+ ..|| ||||+++|
T Consensus 101 ~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~-~ED~~~~~ 148 (763)
T PRK12862 101 AVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGIN-LEDIKAPE 148 (763)
T ss_pred HHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceee-eecccCch
Confidence 99999999999 5555 55565 66 88999999988 87 7899 99999999
Q ss_pred HHHHHHHHcCC--CceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 342 AFDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 342 Af~lL~ryr~~--~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
||++|+|||++ ||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+. .|+++
T Consensus 149 ~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~---- 219 (763)
T PRK12862 149 CFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR---- 219 (763)
T ss_pred HHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----
Confidence 99999999986 89999999999999999999999999999999999999999999999999986 38874
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
+||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||
T Consensus 220 ~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifals 292 (763)
T PRK12862 220 ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALA 292 (763)
T ss_pred ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCC
Confidence 8999999999999999766999999999986 45799999998 999999999 8999999999997 999999999
Q ss_pred CCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 006454 500 NPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQ 579 (644)
Q Consensus 500 NPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~ 579 (644)
||| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++
T Consensus 293 NP~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 359 (763)
T PRK12862 293 NPT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAEL 359 (763)
T ss_pred CCc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhc
Confidence 999 89999999999999 999998 69999999999999999999999999999999999999999999
Q ss_pred cCccC--------------CCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 006454 580 VTQEN--------------FDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 633 (644)
Q Consensus 580 v~~e~--------------~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~ 633 (644)
+++++ +....|||+..+ ++|+..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 360 AREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred ccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 99873 445569996666 88999999999999999999985 3 3466676654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1e-107 Score=925.03 Aligned_cols=358 Identities=31% Similarity=0.512 Sum_probs=333.7
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCc-ccccchhh
Q 006454 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (644)
Q Consensus 184 ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 262 (644)
.+.|+++|||||+++|++ |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 346999999999999996 899999999 666655 469999999999999999999 89999999
Q ss_pred hhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCc-cceecccCCCCc
Q 006454 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQVFEDFANHN 341 (644)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~-lIq~fEDf~~~n 341 (644)
++|||+||||| ++ |+||||++ +||||++|+..| |.. +|| ||||++||
T Consensus 93 ~~l~~~~~gid---~~----~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~-~ED~~~p~ 140 (752)
T PRK07232 93 GVLFKKFAGID---VF----DIEVDEED-----------------------PDKFIEAVAALE-PTFGGIN-LEDIKAPE 140 (752)
T ss_pred HHHHHhhcCCC---cc----ccccCCCC-----------------------HHHHHHHHHHhC-CCccEEe-eeecCCch
Confidence 99999999999 55 55555653 799999999999 775 999 99999999
Q ss_pred HHHHHHHHcCC--CceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 342 AFDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 342 Af~lL~ryr~~--~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
||++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ +
T Consensus 141 ~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~ 211 (752)
T PRK07232 141 CFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----K 211 (752)
T ss_pred HHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----c
Confidence 99999999975 89999999999999999999999999999999999999999999999999986 3887 6
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
++||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||
T Consensus 212 ~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifals 284 (752)
T PRK07232 212 ENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALA 284 (752)
T ss_pred ccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecC
Confidence 899999999999999966699999999998 455799999998 999999999 8999999999997 799999999
Q ss_pred CCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 006454 500 NPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQ 579 (644)
Q Consensus 500 NPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~ 579 (644)
||| ||||||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++
T Consensus 285 NP~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 351 (752)
T PRK07232 285 NPD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAEL 351 (752)
T ss_pred CCC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhh
Confidence 999 89999999999999 999998 69999999999999999999999999999999999999999999
Q ss_pred cCcc--------------CCCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 006454 580 VTQE--------------NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR 620 (644)
Q Consensus 580 v~~e--------------~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~GlA~~ 620 (644)
++++ ++.+..|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 352 AREEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred cccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 9986 6888999999888 67999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.1e-98 Score=770.44 Aligned_cols=277 Identities=61% Similarity=1.007 Sum_probs=270.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 360 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 360 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhhhhhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006454 440 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 517 (644)
Q Consensus 440 ~~~k~~fA~~~~--~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~ 517 (644)
+++|++||++.+ +.++|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCc
Q 006454 518 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 597 (644)
Q Consensus 518 GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~i 597 (644)
|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 006454 598 RKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSP 638 (644)
Q Consensus 598 r~vs~~IA~aVa~~A~~~GlA~~~~~p~dl~~~i~~~m~~P 638 (644)
|+||..||.+|+++|+++|+|+..++|+|+++||++.||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.4e-95 Score=739.48 Aligned_cols=252 Identities=56% Similarity=0.922 Sum_probs=229.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 360 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 360 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+||||+||||||++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999994 59
Q ss_pred chhhhhhccccCCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006454 440 QHFKKPWAHEHEPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 440 ~~~k~~fA~~~~~~---~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 516 (644)
+++|++|||+..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987765 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006454 517 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 596 (644)
Q Consensus 517 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 596 (644)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 006454 597 IRKISAHIAAEVAAKAY 613 (644)
Q Consensus 597 ir~vs~~IA~aVa~~A~ 613 (644)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.1e-92 Score=717.78 Aligned_cols=251 Identities=50% Similarity=0.780 Sum_probs=245.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 360 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 360 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+||||++||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999965 8
Q ss_pred chhhhh---hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006454 440 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 440 ~~~k~~---fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 516 (644)
.++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006454 517 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 596 (644)
Q Consensus 517 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 596 (644)
+|||||||||||+||+|||++|+|+||||+|||||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 006454 597 IRKISAHIAAEVAAKA 612 (644)
Q Consensus 597 ir~vs~~IA~aVa~~A 612 (644)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.5e-83 Score=621.42 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.3
Q ss_pred HHhhHHHHHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 006454 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (644)
Q Consensus 168 ~~rNe~LFY~ll~~~~ee~lPivYTPtVG~acq~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (644)
|++||+|||++|.+|+||+||||||||||+|||+||++|++|+|||+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhhhhHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCC
Q 006454 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (644)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp 327 (644)
|||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecccCCCCcHHHHHHHHc
Q 006454 328 RILIQVFEDFANHNAFDLLEKYG 350 (644)
Q Consensus 328 ~~lIq~fEDf~~~nAf~lL~ryr 350 (644)
+++|| ||||+++|||++|+|||
T Consensus 161 ~~~Iq-fEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQ-FEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEE-E-S--CCHHHHHHHHHT
T ss_pred CeEEE-EecCCChhHHHHHHhcC
Confidence 99999 99999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=6.4e-58 Score=456.52 Aligned_cols=223 Identities=35% Similarity=0.509 Sum_probs=207.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 360 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 360 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
+||||+|++||+++|++..|.+++|+|+||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3876 679999999999999997679
Q ss_pred chhhhhhcccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 006454 440 QHFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 440 ~~~k~~fA~~~--~~~-~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT 516 (644)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 222 378899986 999999999 8899999999996 899999999999 89999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006454 517 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 596 (644)
Q Consensus 517 ~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 596 (644)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 006454 597 IRKISAHIAAEVAAKA 612 (644)
Q Consensus 597 ir~vs~~IA~aVa~~A 612 (644)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=3.7e-08 Score=84.67 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
+||.++++++..+.+..+.+++..+++++|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998763 3 267999988
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
|+||++++.++.|.++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.52 E-value=0.0068 Score=67.30 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=82.9
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006454 352 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 421 (644)
Q Consensus 352 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~ 421 (644)
.+|+|| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ 237 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------R 237 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------E
Confidence 799998 6678888777666653 446778999999999999999999888642 52 5
Q ss_pred EEEEccCCcccCCCccCCchhhhhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 422 IWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 422 i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
++++|.+ ..| ...|+ ..-...++.++++. .|++|-+++..++|+.+.++.|. ..-|++-.+.
T Consensus 238 ViV~d~d----p~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~ 300 (425)
T PRK05476 238 VIVTEVD----PIC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGH 300 (425)
T ss_pred EEEEcCC----chh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCC
Confidence 8888864 111 11111 11123468888874 89999988877788888888884 3335555554
Q ss_pred CC
Q 006454 501 PT 502 (644)
Q Consensus 501 Pt 502 (644)
+.
T Consensus 301 ~d 302 (425)
T PRK05476 301 FD 302 (425)
T ss_pred CC
Confidence 43
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.20 E-value=0.0018 Score=71.09 Aligned_cols=121 Identities=25% Similarity=0.383 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
.+.-++..+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4888999999999999999888864 264 5799888741 11 11
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKP-IIFSLSNPT 502 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erP-IIFaLSNPt 502 (644)
...+.+....-+..++.+++.. .|++|-+++.+ ..++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1211111111122467788875 89999987654 468999999875433356 888999997
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.10 E-value=0.015 Score=64.98 Aligned_cols=188 Identities=17% Similarity=0.160 Sum_probs=127.7
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHH---HHHHHHcCC---C-------cee----ecCCcchHHHH
Q 006454 305 AIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF---DLLEKYGTT---H-------LVF----NDDIQGTASVV 367 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf---~lL~ryr~~---~-------~~F----NDDiQGTaaVv 367 (644)
.+..|-..|...|+.++.+.+||..=|- =+|++. +.. -+.+.|+.- . ++- .+--..||-=+
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~Dip-apDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv 215 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVP-AGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGL 215 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcC-ccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHH
Confidence 4556888999999999999999955555 555553 222 255677531 1 111 13345788888
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchh----
Q 006454 368 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF---- 442 (644)
Q Consensus 368 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv-Ds~GLi~~~R~~~L~~~---- 442 (644)
..++..+++..|.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+..
T Consensus 216 ~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~ 281 (445)
T PRK09414 216 VYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKE 281 (445)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHH
Confidence 88999999999999999999999999999999999954 353 45555 9999999875 34332
Q ss_pred -hh-------hhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHH
Q 006454 443 -KK-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEA 512 (644)
Q Consensus 443 -k~-------~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA 512 (644)
|. .|... ....-+- +.+-.++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| ++++
T Consensus 282 ~k~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~ 355 (445)
T PRK09414 282 IKEVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEV 355 (445)
T ss_pred HHHhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHH
Confidence 11 11110 0000112 2234568999997665 67999999998853 45789999998 76 233 4455
Q ss_pred hc
Q 006454 513 YT 514 (644)
Q Consensus 513 ~~ 514 (644)
+.
T Consensus 356 L~ 357 (445)
T PRK09414 356 FL 357 (445)
T ss_pred HH
Confidence 54
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.08 E-value=0.011 Score=65.36 Aligned_cols=185 Identities=22% Similarity=0.229 Sum_probs=124.9
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHH---HHHHHHcC----CCcee----------ecCCcchHHHH
Q 006454 305 AIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF---DLLEKYGT----THLVF----------NDDIQGTASVV 367 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf---~lL~ryr~----~~~~F----------NDDiQGTaaVv 367 (644)
.+..|-..|...|+.++.+.-||..=|= =+|++.. .. -+.+.|+. .-.|+ .+--..||-=+
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~Dip-apDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv 189 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVP-APDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGV 189 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcc-cCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHH
Confidence 4567888999999999999999843222 3455432 22 24566653 11111 23334588888
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCchhhh-h
Q 006454 368 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK-P 445 (644)
Q Consensus 368 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R~~~L~~~k~-~ 445 (644)
..++-.+++..|.+|+..||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+... .|+.... .
T Consensus 190 ~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~ 255 (410)
T PLN02477 190 VFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRK 255 (410)
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHH
Confidence 889999999999999999999999999999999988652 53 455 899999999875 3443221 1
Q ss_pred hccccC--------CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 006454 446 WAHEHE--------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 514 (644)
Q Consensus 446 fA~~~~--------~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~~ 514 (644)
+.+... ..-+-.|.+. .+.||||=+. .++..|++.+..+ +-.||.--+| |+ -+| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 111100 0012223333 4899999665 4679999999986 6889999999 65 344 445554
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.01 E-value=0.0084 Score=60.77 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-|+.. . |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 56667778888899999999999999999999999999999763 53 678899999988876 3 4332
Q ss_pred -hhhhccccCCCCC------H-HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 006454 443 -KKPWAHEHEPVKE------L-VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 513 (644)
Q Consensus 443 -k~~fA~~~~~~~~------L-~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~ 513 (644)
...++++...... + .+.+-.++.||||=++. ++..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 2222221111100 0 13344568899997777 569999999988 4789998888 8742 456665
Q ss_pred c
Q 006454 514 T 514 (644)
Q Consensus 514 ~ 514 (644)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 4
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.00 E-value=0.0044 Score=65.41 Aligned_cols=136 Identities=23% Similarity=0.363 Sum_probs=86.6
Q ss_pred CcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 340 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 340 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777655444 34456666666555555554 889999999999999988888864 242
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFS 497 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFa 497 (644)
++|+++|+. ..| .....+.|-....+..++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 221 112222221111112357777775 8999999887754 67666654322 2347778
Q ss_pred cCCCC
Q 006454 498 LSNPT 502 (644)
Q Consensus 498 LSNPt 502 (644)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 21
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.85 E-value=0.0049 Score=67.74 Aligned_cols=120 Identities=26% Similarity=0.421 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666544444434 6888999999999999999888753 354 679988874 122 112
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCC--CCcEEEecCCCC
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLN--EKPIIFSLSNPT 502 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~--erPIIFaLSNPt 502 (644)
..+.|.....+..++.+++.. .|++|-+++.+. .++++.++.+.+.. ...+|+=|++|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 222221111112456677764 899999887654 67999999875322 335888899997
No 22
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.79 E-value=0.018 Score=63.73 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=87.1
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006454 352 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 421 (644)
Q Consensus 352 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~ 421 (644)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 789987 677899977776655 566778999999999999999999988763 253 5
Q ss_pred EEEEccCCcccCCCccCCchhhhhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 422 IWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 422 i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
++++|.+- .| ...|+ +.....++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88888641 11 11111 11122357788874 89999888777778887777774 4456666666
Q ss_pred CCCCCCCCHHHH
Q 006454 501 PTSQSECTAEEA 512 (644)
Q Consensus 501 Pts~aEct~edA 512 (644)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 54 45554444
No 23
>PLN02494 adenosylhomocysteinase
Probab=96.65 E-value=0.024 Score=63.86 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006454 352 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 421 (644)
Q Consensus 352 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~ 421 (644)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678887 456899888888877 667888999999999999999999999853 253 5
Q ss_pred EEEEccCCcccCCCccCCchhhhhhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 422 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 422 i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
++++|.+.. +...|.. .-..-++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 888876411 1111111 0112358888875 89999877777788899999885 5668877787
Q ss_pred CCCCCCCCHHHHhcc
Q 006454 501 PTSQSECTAEEAYTW 515 (644)
Q Consensus 501 Pts~aEct~edA~~w 515 (644)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77777766654
No 24
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.64 E-value=0.012 Score=65.08 Aligned_cols=129 Identities=18% Similarity=0.249 Sum_probs=92.9
Q ss_pred CCceee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006454 352 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 421 (644)
Q Consensus 352 ~~~~FN----------DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~ 421 (644)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 667899998887776 566788999999999999999999987754 363 4
Q ss_pred EEEEccCCcccCCCccCCchhhhhhcccc-CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 422 IWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 422 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
++++|.+ . .+...|+.. -..-++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~--------~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----P--------ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----h--------hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7778763 1 222333321 112246788864 79999999888888888888884 4556666676
Q ss_pred CCCCCCCCHHHHhc
Q 006454 501 PTSQSECTAEEAYT 514 (644)
Q Consensus 501 Pts~aEct~edA~~ 514 (644)
+. .|+...+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 6888877654
No 25
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.64 E-value=0.068 Score=59.90 Aligned_cols=182 Identities=15% Similarity=0.113 Sum_probs=121.0
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcH--HHHHHHHcC---C-Ccee----------ecCCcchHHHHH
Q 006454 305 AIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNA--FDLLEKYGT---T-HLVF----------NDDIQGTASVVL 368 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nA--f~lL~ryr~---~-~~~F----------NDDiQGTaaVvL 368 (644)
.+-.|...|.-.||..+.+.+||+.-|- =+|++..-. --+.+.|+. . .-+| .+--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dip-ApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~ 212 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVP-AGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNI 212 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccC-ccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHH
Confidence 4566788999999999999999977776 677754221 135666652 1 1233 334456888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 448 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~ 448 (644)
-++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+..|-.
T Consensus 213 ~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~ 279 (444)
T PRK14031 213 YFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIM 279 (444)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 89999999999999999999999999999999999753 63 3355699999988754 46554433211
Q ss_pred ccCC--CCCHHH-------------HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006454 449 EHEP--VKELVD-------------AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 502 (644)
Q Consensus 449 ~~~~--~~~L~e-------------aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 502 (644)
+... .+++.+ .+-.++.||||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 280 ~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN~P~ 347 (444)
T PRK14031 280 ELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGANMPS 347 (444)
T ss_pred HHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCCCCC
Confidence 1000 011111 111246788886555 5688888888884311 126666776 54
No 26
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.62 E-value=0.018 Score=62.42 Aligned_cols=113 Identities=20% Similarity=0.343 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
|+++...++--|.+..|..|++.++++.|| |+.|--++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888888999999999999999999 89999999888642 232 679988874 112 333
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT--FTKEVVEAMASLNEKP-IIFSLSNPTS 503 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~--Fteevv~~Ma~~~erP-IIFaLSNPts 503 (644)
.+..+.. ....+|.+++.. +|+++=+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333321 123467788875 9999988776433 577655 344 5556888864
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.57 E-value=0.018 Score=56.32 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh
Q 006454 367 VLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 445 (644)
Q Consensus 367 vLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~ 445 (644)
+..+.+-.++....+|.+.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~----------------- 77 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK----------------- 77 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-----------------
Confidence 3334444555566789999999999998 59889888864 242 58988864
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 446 WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 446 fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
..+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788886 99999999998899999764 346778888876
No 28
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.51 E-value=0.0041 Score=57.89 Aligned_cols=102 Identities=24% Similarity=0.425 Sum_probs=67.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cCCCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 456 (644)
.++++.|++++|||.+|-+++..|... |. ++|+++++. .+| .+.....|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 378999999999999998888887653 64 789999973 222 33333334110 1123456
Q ss_pred HHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 006454 457 VDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSLSNPTS 503 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPts 503 (644)
.+.+.. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677775 999999988763 6788887643211 249999999964
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.38 E-value=0.028 Score=59.11 Aligned_cols=139 Identities=18% Similarity=0.277 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 360 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 360 iQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
+..+-+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HH
Confidence 34555666666777788888999999999999999999999999642 52 588888741 1 11
Q ss_pred chhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc
Q 006454 440 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR 519 (644)
Q Consensus 440 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Gr 519 (644)
...+ .+....-...+|.+.+++ .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|.+ -+-+
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~ 257 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIK 257 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCE
Confidence 1111 000011112457777774 89999754 34578999988884 456888776422 4555655444 3447
Q ss_pred EEEeeCCC
Q 006454 520 AIFASGSP 527 (644)
Q Consensus 520 aifASGSP 527 (644)
++.+-|-|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 88888865
No 30
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.23 E-value=0.43 Score=53.83 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=124.7
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHHH---HHHHHcC---CC-ceee----------cCCcchHHHH
Q 006454 305 AIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFD---LLEKYGT---TH-LVFN----------DDIQGTASVV 367 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf~---lL~ryr~---~~-~~FN----------DDiQGTaaVv 367 (644)
.+..|-..|...||..+.+..||..=|- =.|++. ++.+ +.+.|+. .+ .|+- +--..||-=+
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~Dvp-A~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv 220 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVP-AGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGL 220 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccc-hhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHH
Confidence 4556778999999999999999988887 788874 3332 4455542 11 2221 1123488888
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCchhhhhh
Q 006454 368 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKKPW 446 (644)
Q Consensus 368 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R~~~L~~~k~~f 446 (644)
+.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+..+
T Consensus 221 ~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~ 286 (454)
T PTZ00079 221 VYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAY 286 (454)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHH
Confidence 889999999999999999999999999999999998653 63 455 999999999875 454433211
Q ss_pred ccc--cCCCCCHHH--------------HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 006454 447 AHE--HEPVKELVD--------------AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 503 (644)
Q Consensus 447 A~~--~~~~~~L~e--------------aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 503 (644)
..+ ....+++.+ .+-.++.|||+=+.. .+..|++-++.+.+ +.-.+|.=-+| |++
T Consensus 287 l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 287 LMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 100 000011111 122367899997776 56999999998843 34668888888 663
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.15 E-value=0.046 Score=55.78 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++.... |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577778888899999999999999999999999999999998653 54 34559999999998753 43
Q ss_pred hhhh-hhccccCC------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006454 441 HFKK-PWAHEHEP------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 502 (644)
Q Consensus 441 ~~k~-~fA~~~~~------~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 502 (644)
.... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2221 11111100 0 11223 3345889999877 5679999999988 5889999999 55
No 32
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.11 E-value=0.031 Score=62.00 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=127.7
Q ss_pred CcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 340 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 340 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
..||..=+|+|.+--. -.|--+|.-|++=-|-++.|. |++.+++|+|||..|..+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 5677777788753210 123334445555555555554 9999999999999999998888753 64
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhcccc----CCCCCHHHHHhccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcE
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPI 494 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~----~~~~~L~eaV~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPI 494 (644)
++|+++.+ |..|. +.+|++. -....|.+.+.. .||+|=.+ ++.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 78998877 33332 2333321 122456667765 88887554 4445889988887654444459
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 006454 495 IFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 574 (644)
Q Consensus 495 IFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 574 (644)
||=|+||-.- .+ ..+.-+|+++|-==-|-.+.-.-..-..+.. ++|+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHH
Confidence 9999999831 11 1233445666544444444333222222222 2222
Q ss_pred HH-----HcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHcC
Q 006454 575 AL-----AGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELG 616 (644)
Q Consensus 575 aL-----A~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~G 616 (644)
++ +.+. +.+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 1111 1234556888999999888888888888887543
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.02 E-value=0.024 Score=64.48 Aligned_cols=219 Identities=18% Similarity=0.251 Sum_probs=121.3
Q ss_pred cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCC-CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 341 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 341 nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~-~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
.||..=.|-|.+.-. -.|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..++..+.. .|.
T Consensus 226 ~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------ 290 (519)
T PLN00203 226 HAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------ 290 (519)
T ss_pred HHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------
Confidence 455555555543211 123445555566556666664 6999999999999999888877753 354
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhcc---ccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCC---CC
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN---EK 492 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---er 492 (644)
++|+++++. ..| .......|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-... .+
T Consensus 291 ~~V~V~nRs----~er---a~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~ 361 (519)
T PLN00203 291 TKMVVVNRS----EER---VAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGG 361 (519)
T ss_pred CeEEEEeCC----HHH---HHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCC
Confidence 679998874 222 2223222210 01123467788875 89999886544 389999999984321 24
Q ss_pred c-EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHH
Q 006454 493 P-IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLA 571 (644)
Q Consensus 493 P-IIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~la 571 (644)
| +|+=||.|-.--.+-. ...|+++|===-|-.+......-..+-...
T Consensus 362 ~~~~IDLAvPRdIdp~v~--------------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~ 409 (519)
T PLN00203 362 KRLFVDISVPRNVGACVS--------------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME 409 (519)
T ss_pred CeEEEEeCCCCCCccccc--------------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH
Confidence 4 5667999963211111 011122221111222322222211211222
Q ss_pred HHHHHHcccC--ccCCCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 006454 572 AAEALAGQVT--QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYEL 615 (644)
Q Consensus 572 AA~aLA~~v~--~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~~ 615 (644)
|-+-+.+.+. .+.+..-.+-|-+.++|+-...|..+=.+.+++.
T Consensus 410 Ae~II~ee~~~F~~w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 410 AQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111111111 1123455688999999999999988888888764
No 34
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.98 E-value=0.14 Score=53.47 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~-lvDs~GLi~~~R~~~L~ 440 (644)
.||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 57777788888889999999999999999999999999999965 263 455 999999999875 344
Q ss_pred hhhh---------------hhcccc--CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 006454 441 HFKK---------------PWAHEH--EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 502 (644)
Q Consensus 441 ~~k~---------------~fA~~~--~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 502 (644)
..+. .|.... ...-+-.|.. .++.||||=+.. ++..|++.++.+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 110000 0001122222 457899997655 67999999999843 45789999998 77
Q ss_pred C
Q 006454 503 S 503 (644)
Q Consensus 503 s 503 (644)
+
T Consensus 159 t 159 (254)
T cd05313 159 T 159 (254)
T ss_pred C
Confidence 3
No 35
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.92 E-value=0.067 Score=56.44 Aligned_cols=127 Identities=22% Similarity=0.304 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh
Q 006454 367 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 446 (644)
Q Consensus 367 vLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 446 (644)
+-+++..|++..+.++...|++|+|+|.+|..++..+.. .| -+++++|++- . +..+
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~----~--------~~~~ 190 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS----A--------HLAR 190 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH----H--------HHHH
Confidence 334566677888889999999999999999999888864 25 2689898851 1 1111
Q ss_pred cccc----CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cEE
Q 006454 447 AHEH----EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RAI 521 (644)
Q Consensus 447 A~~~----~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G-rai 521 (644)
++.. ....+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| +++
T Consensus 191 ~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~ 260 (296)
T PRK08306 191 ITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKAL 260 (296)
T ss_pred HHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEE
Confidence 2110 112467777774 999998754 4578999988885 566777565433 2344443332 34 455
Q ss_pred EeeCCC
Q 006454 522 FASGSP 527 (644)
Q Consensus 522 fASGSP 527 (644)
.++|-|
T Consensus 261 ~~~~lp 266 (296)
T PRK08306 261 LAPGLP 266 (296)
T ss_pred EECCCC
Confidence 556644
No 36
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.83 E-value=0.46 Score=53.47 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=127.5
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHH---HHHHHHcC----CCceee----------cCCcchHHHH
Q 006454 305 AIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAF---DLLEKYGT----THLVFN----------DDIQGTASVV 367 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf---~lL~ryr~----~~~~FN----------DDiQGTaaVv 367 (644)
.+..|-..|.-.||..+.+..||+.=|= =.|++. ++. -+++.|+. ...++. +--..||-=+
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIp-ApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv 211 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVP-AGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGA 211 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcc-ccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHH
Confidence 4556888999999999998889966555 566653 332 24566653 222321 1122388888
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh--
Q 006454 368 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-- 445 (644)
Q Consensus 368 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~-- 445 (644)
..++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 212 ~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l 278 (445)
T PRK14030 212 LYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHH
Confidence 889999999999999999999999999999999999653 64 4577789999998864 35543311
Q ss_pred -------------hccccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCH
Q 006454 446 -------------WAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTA 509 (644)
Q Consensus 446 -------------fA~~~~~~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~ 509 (644)
++...+.. -+-.+ +-.++.||||=+.. ++..|++.++.+.+ +.-.||.=-+| |++ +| +
T Consensus 279 ~~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A 352 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--A 352 (445)
T ss_pred HHHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--H
Confidence 11010000 01112 22467899997665 56999999999854 35778888888 542 33 4
Q ss_pred HHHhc
Q 006454 510 EEAYT 514 (644)
Q Consensus 510 edA~~ 514 (644)
++++.
T Consensus 353 ~~iL~ 357 (445)
T PRK14030 353 IDKFI 357 (445)
T ss_pred HHHHH
Confidence 45554
No 37
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.79 E-value=0.2 Score=56.75 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=83.9
Q ss_pred CCceeecCCcchHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 006454 352 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 424 (644)
Q Consensus 352 ~~~~FNDDiQGTaaVv-------LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~l 424 (644)
.+||+|-+---|-++. ++.+-+.+|.++..|...+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986654444432 44445557788899999999999999999999999864 253 4777
Q ss_pred EccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006454 425 VDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 501 (644)
Q Consensus 425 vDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 501 (644)
+|++-. +. +.... +.-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 766411 10 11011 11112468888875 99999988888899999999995 44566655554
No 38
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.79 E-value=0.036 Score=51.24 Aligned_cols=113 Identities=20% Similarity=0.298 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 448 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~ 448 (644)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | -.+++++|+. .. ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HH---HHHHHHHHHhh
Confidence 58899999988889999999999998888888777532 3 1578888874 11 12222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEecC-CCC
Q 006454 449 E--HEPVKELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS-NPT 502 (644)
Q Consensus 449 ~--~~~~~~L~eaV~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS-NPt 502 (644)
. .....++.++++. +|++|-+...+ .. .+++........+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~-~~~~~~~~~~~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVG-MKPGDELPLPPSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCC-CCCCCCCCCCHHHcCCCCEEEEcCcCCC
Confidence 1 0123456666654 89999876654 22 111110011124566777775 444
No 39
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.72 E-value=0.22 Score=51.64 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=101.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh-------hhccc--------
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-------PWAHE-------- 449 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~-------~fA~~-------- 449 (644)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+. .+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888642 5 3689998741 1 1111111 11000
Q ss_pred -------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 006454 450 -------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 522 (644)
Q Consensus 450 -------~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Graif 522 (644)
.....++.++++. .|++|=+-...-.+.+++++...+......|++ ||.+++ .+.++.+.+.-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0113578888875 788875433222356777887777666556663 565554 444444433211113
Q ss_pred eeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCc-cc-CCCCCchhh
Q 006454 523 ASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGL-LY-PPFKNIRKI 600 (644)
Q Consensus 523 ASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~-l~-P~~~~ir~v 600 (644)
....||.|+.... ..- +.....-+++.+ +.+..+...+. +.. ++ |... --|
T Consensus 139 vg~Hf~~p~~~~~---------lve----------vv~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAE----------IMGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEE----------EeCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3356777764221 111 222233355544 44555554432 221 22 2222 245
Q ss_pred HHHHHHHHHHHH---HHcCCCCCCCCchhHHHHH
Q 006454 601 SAHIAAEVAAKA---YELGLATRLPPPKDLVKYA 631 (644)
Q Consensus 601 s~~IA~aVa~~A---~~~GlA~~~~~p~dl~~~i 631 (644)
..+|-.++...| +++|+|+ |+|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 555665665555 4589886 45555444
No 40
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.66 E-value=0.081 Score=52.74 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHHHh--CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 362 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~--g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | -+++++|++ .+.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~-------~~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADIN-------EEAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC-------HHHH
Confidence 46666777788888885 8899999999999999999999988653 5 368888865 1123
Q ss_pred chhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 006454 440 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 514 (644)
Q Consensus 440 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~edA~~ 514 (644)
..++..|.. ... +..+... .+.|+++=++. ++..|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 344333311 111 2233333 37999995555 679999999999 4678888888 6632 33445544
No 41
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.65 E-value=0.043 Score=60.72 Aligned_cols=132 Identities=18% Similarity=0.296 Sum_probs=79.1
Q ss_pred CcHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 340 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 340 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
..||+.=.|-|.+.-. + .|.-+|+-+|+=-|.+.. .++++.|++++|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------ 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------ 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------
Confidence 3566666666653211 0 122234444443333333 35889999999999999888887754 364
Q ss_pred CeEEEEccCCcccCCCccCCchhhhhhc-cccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcE-EE
Q 006454 420 KKIWLVDSKGLIVSSRLESLQHFKKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPI-IF 496 (644)
Q Consensus 420 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA-~~~~~~~~L~eaV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IF 496 (644)
++|+++++. .+|. ......|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+
T Consensus 206 ~~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~i 270 (414)
T PRK13940 206 KQIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFI 270 (414)
T ss_pred CEEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEE
Confidence 679998884 2221 12222221 111223456777775 999999887764 66866542 4565 46
Q ss_pred ecCCCC
Q 006454 497 SLSNPT 502 (644)
Q Consensus 497 aLSNPt 502 (644)
=|+.|-
T Consensus 271 DLavPR 276 (414)
T PRK13940 271 DISIPQ 276 (414)
T ss_pred EeCCCC
Confidence 799997
No 42
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.58 E-value=0.043 Score=57.58 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch-hhhhhc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWA 447 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~-~k~~fA 447 (644)
.|++.+++..+..++.++++++|||.||..++..|.. .|+ ++|+++|+. ..|.+.+.. ++..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4667777766667888999999999999999888864 365 679999984 233222221 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006454 448 H-EHEPVKELVDAVNAIKPTILIGTSGQG 475 (644)
Q Consensus 448 ~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 475 (644)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 1 01112345555654 89999988765
No 43
>PLN00106 malate dehydrogenase
Probab=95.46 E-value=0.088 Score=56.59 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 447 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA 447 (644)
|.-|-|+|..|..-. .||+|+|| |..|.-+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887766 69999999 9999999987763 244 35799999865 1111112332221 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 448 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 448 ~~~--~~~~~L~eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
+-. ....++.++++. .|+.|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 211 123467888887 8888877766432 2457888899999999999999999
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.44 E-value=0.1 Score=50.89 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677788888888888899999999999997 9988888887764 23 468888764
No 45
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.098 Score=55.59 Aligned_cols=95 Identities=18% Similarity=0.372 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| -.+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 456778899999999999999999999999988 99999999864 24 3577887641
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi 231 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGN 231 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCC
Confidence 257788886 99999999999999998764 3345555544
No 46
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.06 Score=56.83 Aligned_cols=97 Identities=19% Similarity=0.359 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+.+-+|-.|++..++..+.+++.+++|++|+|- +|..||.+|.. .| | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT 502 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt 502 (644)
..+|.+.++ +.|++|-+.+.++.|+.+.++ +.-+|+=. .||.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~ 235 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPR 235 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeec
Confidence 124667676 499999999988888887764 44555544 3553
No 47
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.67 E-value=0.08 Score=55.37 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=61.9
Q ss_pred CceeecCCcchHHHHHHHHHHHHHHhCC--CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 353 HLVFNDDIQGTASVVLAGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 353 ~~~FNDDiQGTaaVvLAgll~Alr~~g~--~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
..=+|-|. .|++.+++..+. ++++++++++|||.||-.|+-.|.. .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 44466664 356777776663 6889999999999998888777654 365 789999873
Q ss_pred ccCCCccCCchhhhhhcccc--CCCC---CHHHHHhccCCcEEEEccCCCCCCCHHH
Q 006454 431 IVSSRLESLQHFKKPWAHEH--EPVK---ELVDAVNAIKPTILIGTSGQGRTFTKEV 482 (644)
Q Consensus 431 i~~~R~~~L~~~k~~fA~~~--~~~~---~L~eaV~~vkPtvLIG~S~~~g~Fteev 482 (644)
.+|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 233222221 121100 0111 2223333 5899999988875454443
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.56 E-value=0.13 Score=55.94 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=63.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCCCHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 457 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 457 (644)
+...+++|+|+|.+|.++|+.+.. .|. ++.++|++ ..| ++.....|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999988864 252 48889874 111 22222222211 11123578
Q ss_pred HHHhccCCcEEEEccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 458 DAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88874 8999988633 3468999999984 5678887774
No 49
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.42 E-value=0.079 Score=45.50 Aligned_cols=95 Identities=15% Similarity=0.275 Sum_probs=63.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv-Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+++.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999888763 54 34678855 653 222444444432110 01268899995
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 501 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 501 (644)
+|++| ++-.+ ..-+++++.+....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89887 55555 4566788888667788999988876
No 50
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.36 E-value=0.31 Score=48.00 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 467777777776 5788999999999999999999999998653 5 357777763
Q ss_pred hhhhhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 006454 441 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 514 (644)
Q Consensus 441 ~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~ 514 (644)
|.+.-=|+ +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 22211121 22234579999986 99999999988899999999995 4455554432 236777666443
No 51
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.26 E-value=0.24 Score=53.83 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=72.1
Q ss_pred CcHHHHHHHHcCCCceeecCCcchHHHHHHH--HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 006454 340 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAG--LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 417 (644)
Q Consensus 340 ~nAf~lL~ryr~~~~~FNDDiQGTaaVvLAg--ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~ee 417 (644)
..||..=.|-|.+.- | |+++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 356666666665321 1 334444433 3333 333 56999999999999988777766654 364
Q ss_pred hcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHH-HHHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHcCCC
Q 006454 418 TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV-DAVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNE 491 (644)
Q Consensus 418 Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~-eaV~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~e 491 (644)
++|+++.+.-. + .+|.. +. +++. ..+.||+|=. +++.-..+.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 67999888631 1 22321 10 1111 1368999964 333346677766532 22
Q ss_pred CcEEEecCCCCC
Q 006454 492 KPIIFSLSNPTS 503 (644)
Q Consensus 492 rPIIFaLSNPts 503 (644)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 52
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.86 E-value=0.12 Score=57.28 Aligned_cols=126 Identities=16% Similarity=0.268 Sum_probs=75.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-CC-----CCCHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELVD 458 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~e 458 (644)
.||+|+||||+ -..+++-..+.+...+ ..+.|||+|-+- ..|-+.+...-+.+++.. .+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 4444444333222233 247899999862 222111111222222221 12 257999
Q ss_pred HHhccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCCC
Q 006454 459 AVNAIKPTILIGTSGQGRT----------------------------------FTKEVVEAMASLNEKPIIFSLSNPTSQ 504 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~erPIIFaLSNPts~ 504 (644)
|++. +|..|=.-.+||. .=.++++.|.++|..-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9987 7877755555541 12378888999999999999999983
Q ss_pred CCCCHHHHhcccCCcEEEeeC
Q 006454 505 SECTAEEAYTWSQGRAIFASG 525 (644)
Q Consensus 505 aEct~edA~~wT~GraifASG 525 (644)
...+-+++++.- -+|.+|
T Consensus 149 --ivt~a~~k~~~~-rviGlc 166 (419)
T cd05296 149 --IVTEAVLRHTGD-RVIGLC 166 (419)
T ss_pred --HHHHHHHHhccC-CEEeeC
Confidence 445555667743 455554
No 53
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.6 Score=49.75 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-+|++..++..+.+|+..+++++|-|. .|..+|.||.. .| ..+.+|+++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-------------
Confidence 34778899999999999999999999999998 99999998864 24 347788764
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
.++|.+.+++ +|++|-..|.++.|+.++|+ +.-+|.=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888886 99999999999999998886 566776555
No 54
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.72 E-value=0.14 Score=51.01 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 468899999999999999999998764 76 789999997
No 55
>PRK05086 malate dehydrogenase; Provisional
Probab=93.46 E-value=0.42 Score=50.97 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=67.0
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCCCCCHHHHHhc
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNA 462 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~ 462 (644)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999998877432 122 256889997522 11110012211 000000 0012467788876
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 463 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 463 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
.|+.|=+.+.+.- ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 8988866665321 4568999999999999999999998
No 56
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.40 E-value=0.19 Score=52.06 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=89.4
Q ss_pred CCcchHHHHHHHHHHHHHHhCCC-CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc
Q 006454 359 DIQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 437 (644)
Q Consensus 359 DiQGTaaVvLAgll~Alr~~g~~-L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~ 437 (644)
--+-||-=|..++-.+++..+.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|++...-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34568888888999999997766 9999999999999999999999763 53 446677999998865421
Q ss_pred CCchhhhhhccccCCCCCH-----------HH--HHhccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 006454 438 SLQHFKKPWAHEHEPVKEL-----------VD--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN-PT 502 (644)
Q Consensus 438 ~L~~~k~~fA~~~~~~~~L-----------~e--aV~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-Pt 502 (644)
+.+...+...+.......+ .+ .+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 1222111111111101111 11 4555799999988 667899999998 774 34789999999 55
No 57
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.26 E-value=1.2 Score=47.84 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCccceecccCCCCcHHHHHHHHcCCCceeecC---CcchHHHHHHHHHHHHHH--------------
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFNDD---IQGTASVVLAGLISAMKF-------------- 377 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FNDD---iQGTaaVvLAgll~Alr~-------------- 377 (644)
.|++++..+ .|-+. |+ . --..-+..++-.--+..+.+.|-- -+..|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~lk~-I~-~-~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~ 134 (332)
T PRK08605 59 EAIYKLLNE-LGIKQ-IA-Q-RSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR 134 (332)
T ss_pred HHHHHhhhh-cCceE-EE-E-cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc
Confidence 566666554 11121 55 2 223334444444445677777742 245666678888876652
Q ss_pred -----hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCC
Q 006454 378 -----LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP 452 (644)
Q Consensus 378 -----~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~ 452 (644)
.|..|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ..
T Consensus 135 ~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~ 190 (332)
T PRK08605 135 WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DY 190 (332)
T ss_pred cccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cc
Confidence 13458899999999999999999998532 243 688888742 1 001 1111 12
Q ss_pred CCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 006454 453 VKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 453 ~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSN 500 (644)
..+|.|+++. .|+++=.-- ..+.|+++.++.|. +..++.=+|.
T Consensus 191 ~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 191 KDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred cCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 3579999986 898885421 23567777787774 5668776665
No 58
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.88 E-value=0.23 Score=51.04 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=78.8
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc--cCCCCCHHHHHhcc
Q 006454 387 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 463 (644)
Q Consensus 387 iv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~eaV~~v 463 (644)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....|.+...++ .. -....++.|++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999887642 41 123689999986411111111133333222 11 1113567888886
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 006454 464 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 526 (644)
Q Consensus 464 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGS 526 (644)
.|++|=+.+.++. .-+++.+.|.+++...+++=.|||. .....-+++++ .-.-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 8988866655432 2468889999999999999999997 34444555553 2234666664
No 59
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.87 E-value=0.07 Score=50.37 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=65.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
.||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-+...-..+..++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 3569999996 2111 11111332221111111111245566775
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 463 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 463 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
.|++|=+.+.+.. +-+++.+.+++++...+++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 8999866555421 2246777888899999999999997
No 60
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.83 E-value=3.6 Score=43.04 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=66.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc------c---------
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH------E--------- 449 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~------~--------- 449 (644)
+||.|+|+|..|.+||..++.. |. +++++|.+- +.++..+....+ +
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME-------GALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH-------HHHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999998653 53 588898631 112222211000 0
Q ss_pred -cCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 006454 450 -HEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 527 (644)
Q Consensus 450 -~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSP 527 (644)
.....++.++++. .|++| ++-.... -.+++++.+......-.|+. ||..+. +.++..++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 0112467777775 67766 3433321 35667777766555444443 443332 24455454433333444556
Q ss_pred CCCc
Q 006454 528 FDPF 531 (644)
Q Consensus 528 F~pV 531 (644)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6665
No 61
>PRK08328 hypothetical protein; Provisional
Probab=92.71 E-value=0.068 Score=54.40 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=73.9
Q ss_pred HHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 006454 346 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 425 (644)
Q Consensus 346 L~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv 425 (644)
++||..++..|..+.| .+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788777766654322 456788999999999999999999864 76 789999
Q ss_pred ccCCcccCCCccCCchhhhhhccccCCC----CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 006454 426 DSKGLIVSSRLESLQHFKKPWAHEHEPV----KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSN 500 (644)
Q Consensus 426 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~----~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSN 500 (644)
|.+ .+.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +.++++-+...- .+.-+|+ +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l--~~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVL--KGVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHH--hcCCEEEECCCC
Confidence 986 1221 124331 1111111110 12345577788998876533 356776555443 2456666 4567
Q ss_pred CCC
Q 006454 501 PTS 503 (644)
Q Consensus 501 Pts 503 (644)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
No 62
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.69 E-value=0.19 Score=50.34 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-C-CCCCHH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E-PVKELV 457 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~-~~~~L~ 457 (644)
.+|++.||+++|+|..|.+||..|+.+ |+ +++.++|.+=+ ..+ +|+.. ..+..+. . ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---ccccc-cCChhhCCCHHHHHHH
Confidence 357889999999999999999999764 76 78999999722 222 35442 1121111 1 112467
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 006454 458 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTSQSEC 507 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts~aEc 507 (644)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77888888865433 333567766665432 234555 55676655443
No 63
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.64 E-value=0.48 Score=50.47 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-+|++.=|+..+.+++.+++|++|.| ..|.-+|.++.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 457788888889999999999999999999 999999999864 253 36666542
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1346788886 99999999999999999885
No 64
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.51 E-value=1.1 Score=43.00 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh
Q 006454 365 SVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 444 (644)
Q Consensus 365 aVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~ 444 (644)
-++..|++.-++..|.+++.++++++|.+.. +++-++..+.+ .| -.+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~g-------atV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DG-------ATVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CC-------CEEEEeCCCC---------------
Confidence 4578889999999999999999999998654 44455444443 35 3577777641
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 445 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 445 ~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.|++++ +|++|-..+.++.|+.|+|+
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 267888987 99999999999999999987
No 65
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.45 E-value=1 Score=51.48 Aligned_cols=180 Identities=19% Similarity=0.241 Sum_probs=92.9
Q ss_pred ccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCC---CcHHHHHHHHcCCCceeecCCcchHHH
Q 006454 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFAN---HNAFDLLEKYGTTHLVFNDDIQGTASV 366 (644)
Q Consensus 290 ~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~---~nAf~lL~ryr~~~~~FNDDiQGTaaV 366 (644)
.|.++-.++|+=|+-.. .++++.+.+. .-.+|- ||.+-. ...+++| --.-.|-|=-+|
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l~~~------~it~ia-~e~vpr~sraq~~d~l--------ssma~IAGy~Av 142 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKLAAR------GVTVLA-MDAVPRISRAQSLDAL--------SSMANIAGYRAV 142 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHHHHc------CCEEEE-eecccccccCCCcccc--------cchhhhhHHHHH
Confidence 45566677777776322 3333333322 223455 666542 2222222 223445565555
Q ss_pred HHHHHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc-
Q 006454 367 VLAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ- 440 (644)
Q Consensus 367 vLAgll~Alr~~g-----~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~- 440 (644)
..|+-.-.--..| ......|++|+|||.+|.+.+..... .| | +++.+|.. ..|.+...
T Consensus 143 ~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aes 206 (509)
T PRK09424 143 IEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVES 206 (509)
T ss_pred HHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHH
Confidence 5444322111111 13458999999999999888766543 35 2 37777764 11110000
Q ss_pred --------------hhhhhhccccCCCCCHHHHH-----hcc-CCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEE
Q 006454 441 --------------HFKKPWAHEHEPVKELVDAV-----NAI-KPTILIGTSGQGR-----TFTKEVVEAMASLNEKPII 495 (644)
Q Consensus 441 --------------~~k~~fA~~~~~~~~L~eaV-----~~v-kPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPII 495 (644)
.....|+++.. .++.+.. +.+ +.|++|.+++.+| +++++.++.|. ..-.|
T Consensus 207 lGA~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvI 281 (509)
T PRK09424 207 MGAEFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVI 281 (509)
T ss_pred cCCeEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEE
Confidence 01112332211 1222221 111 4999999999876 67999999996 44566
Q ss_pred EecCCCC-CCCCCCH
Q 006454 496 FSLSNPT-SQSECTA 509 (644)
Q Consensus 496 FaLSNPt-s~aEct~ 509 (644)
.=++.+. ...|++.
T Consensus 282 Vdvg~~~GG~~e~t~ 296 (509)
T PRK09424 282 VDLAAENGGNCELTV 296 (509)
T ss_pred EEEccCCCCCccccc
Confidence 6677653 3345553
No 66
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.40 E-value=0.47 Score=50.05 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=76.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-CCCCCHHHHHhccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vk 464 (644)
||.|+|+|.+|..+|..++. .|+ ..+|.++|.+-=..++-..+|.+......... -...+. +.++ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~--~ 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCK--D 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhC--C
Confidence 89999999999999998764 254 35799999852211111111221110000000 011334 3455 4
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 006454 465 PTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 527 (644)
Q Consensus 465 PtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G--raifASGSP 527 (644)
.|++|=+.+.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++= +-||.+|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988877521 12577888889999999999999983 445555554311 346777654
No 67
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.29 E-value=1.8 Score=48.88 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh------------hhhhccc--c
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAHE--H 450 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~------------k~~fA~~--~ 450 (644)
.||-|+|+|..|.+||..++.. |. +++++|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999753 64 58888873 1111111100 0001110 1
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 006454 451 EPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 527 (644)
Q Consensus 451 ~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGSP 527 (644)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..| |+-.+ +++..+.. .|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss--Tsgi~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS--TSGFL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc--CCCCC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899986 78887 4444432 4556666666555555666554 32222 33332322 4455544 58
Q ss_pred CCCcc
Q 006454 528 FDPFE 532 (644)
Q Consensus 528 F~pV~ 532 (644)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88874
No 68
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.15 E-value=0.86 Score=49.10 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc--ccCCCCCHHH
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHEPVKELVD 458 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--~~~~~~~L~e 458 (644)
++-.||+|+|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+... ... ...+..+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34569999999 9999999987752 243 3679999983 21 111112332211 111 1111123468
Q ss_pred HHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 459 AVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
+++. .|+.|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8887 8988755555322 4568899999999999999999999
No 69
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.08 E-value=0.34 Score=51.20 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677788888888999999999999998877666643 365 689999984
No 70
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.77 E-value=0.49 Score=49.71 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 352 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 352 ~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..=+|-| ..|++.+++..+..++++++|++|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34566777 45677888877778889999999998776666655543 364 679999874
No 71
>PRK08223 hypothetical protein; Validated
Probab=91.59 E-value=0.36 Score=51.41 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 006454 343 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 422 (644)
Q Consensus 343 f~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i 422 (644)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677788766665544432 568899999999999999999999875 76 789
Q ss_pred EEEccCC
Q 006454 423 WLVDSKG 429 (644)
Q Consensus 423 ~lvDs~G 429 (644)
.++|.+=
T Consensus 55 ~lvD~D~ 61 (287)
T PRK08223 55 TIADFDV 61 (287)
T ss_pred EEEeCCC
Confidence 9999873
No 72
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.58 E-value=0.4 Score=51.12 Aligned_cols=126 Identities=15% Similarity=0.271 Sum_probs=77.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCCCCCHHHHHhcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 463 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v 463 (644)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 365 3679999973111111111133222 22111 0011344 45665
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 006454 464 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 527 (644)
Q Consensus 464 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGSP 527 (644)
.|++|=+.+.+.. .=+++++.|.+++...+|+-.|||. +.....+++++ .-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999877666421 1156788888899999999999998 34445566664 22336666643
No 73
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.44 E-value=0.46 Score=51.98 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=72.9
Q ss_pred HHHHcCCCce--eecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 006454 346 LEKYGTTHLV--FNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 423 (644)
Q Consensus 346 L~ryr~~~~~--FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~ 423 (644)
++||..++.+ |.-+-| .+|++.||+++|+|..|.-+|..|+.+ |+ ++|.
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ 69 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTIT 69 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEE
Confidence 5789877655 443222 678899999999999999999999864 76 7899
Q ss_pred EEccCCcccCCCc--------cCCchhhhhhccc-----cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCC
Q 006454 424 LVDSKGLIVSSRL--------ESLQHFKKPWAHE-----HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFT 479 (644)
Q Consensus 424 lvDs~GLi~~~R~--------~~L~~~k~~fA~~-----~~~---------~--~~L~eaV~~vkPtvLIG~S~~~g~Ft 479 (644)
++|.+=+ ..+.- +++-..|..-|.. .+. . .++.+.+++ .|++|.++.-. =+
T Consensus 70 ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~ 144 (370)
T PRK05600 70 LIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--AT 144 (370)
T ss_pred EEeCCEE-ccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HH
Confidence 9999732 22110 0111112111110 000 1 245556654 78888766632 15
Q ss_pred HHHHHHHHcCCCCcEEEe
Q 006454 480 KEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 480 eevv~~Ma~~~erPIIFa 497 (644)
+-.|..++.....|.|++
T Consensus 145 r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 145 KFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 566777777777888886
No 74
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.43 E-value=3.2 Score=43.15 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998653 53 58899974
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.39 E-value=1.1 Score=45.45 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC
Q 006454 365 SVVLAGLISAMKFLG---------GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 434 (644)
Q Consensus 365 aVvLAgll~Alr~~g---------~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~ 434 (644)
-+|-.|++-=|+..+ .+++.++++++|-+. .|.-+|.||.. .| -.+++||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445566666666654 489999999999765 57777777753 24 358899999988866
Q ss_pred CccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHH
Q 006454 435 RLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVE 484 (644)
Q Consensus 435 R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~-Fteevv~ 484 (644)
+..++.+.+.+. ....++|.|.+++ +|++|-.-+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 643332211100 0111248898987 9999999999997 8999887
No 76
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=91.31 E-value=0.53 Score=52.49 Aligned_cols=125 Identities=18% Similarity=0.312 Sum_probs=74.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCC-----CCCHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 457 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~-Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 457 (644)
.||+|+||||+ -.-.|+..+.+.. .++ .+.|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 4444444443322 342 4789999975 44432222222333332 112 25788
Q ss_pred HHHhccCCcEEEEccC--------------------------CCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 006454 458 DAVNAIKPTILIGTSG--------------------------QGRTFT--------KEVVEAMASLNEKPIIFSLSNPTS 503 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~--------------------------~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 503 (644)
||++. +|..|-.-. .||.|. .++++.|.++|..-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 88887 776664333 334333 38889999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 006454 504 QSECTAEEAYTWSQGRAIFASG 525 (644)
Q Consensus 504 ~aEct~edA~~wT~GraifASG 525 (644)
.-+| +-+++++...-+|.+|
T Consensus 147 -di~t-~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVT-EAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHH-HHHHHhCCCCcEEEEC
Confidence 3332 3344555333455554
No 77
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.19 E-value=0.4 Score=52.05 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 57889999999999999999999764 76 789999986
No 78
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.13 E-value=0.46 Score=50.09 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556888999999999999988877754 365 689999984
No 79
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.96 E-value=0.31 Score=52.59 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468889999999999999999999875 76 7899999973
No 80
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.92 E-value=0.46 Score=49.95 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 53 58888874
No 81
>PLN02928 oxidoreductase family protein
Probab=90.78 E-value=2.8 Score=45.46 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 006454 361 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 424 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~----------------~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~l 424 (644)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998642 64 5788
Q ss_pred EccCCcccCCCccCCchhh----hhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 425 VDSKGLIVSSRLESLQHFK----KPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 425 vDs~GLi~~~R~~~L~~~k----~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
+|+.. .......+. ++ ..+........+|.|+++. .|+++-.- ...+.|+++.++.|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 000000000 00 0111111134689999997 89998652 234799999999995 566777
Q ss_pred ecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 006454 497 SLSNPTSQSECTAEEAYT--WSQGRAIFA 523 (644)
Q Consensus 497 aLSNPts~aEct~edA~~--wT~GraifA 523 (644)
=.|. .++--|+|+- ...|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6654 4555554442 135655444
No 82
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.74 E-value=0.9 Score=45.94 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc--C-CCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--E-PVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~-~~~~L 456 (644)
.+|++.||+++|+|..|.-+|+.|+.. |+ ++|.++|.+= |..+ +|..+- -|..++ . ....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcCc---cccccc-ccChhhCCChHHHHH
Confidence 368889999999999999999999864 76 7899999972 3322 243321 121111 1 11346
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
.+.++.+.|++=|=.. ...++++-+...-+. -.=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~~-~DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAY--NERLDAENAEELIAG-YDLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEe--cceeCHHHHHHHHhC-CCEEEEcCCCHH
Confidence 6777777787544322 223455444433221 122334666665
No 83
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.74 E-value=1 Score=48.36 Aligned_cols=92 Identities=13% Similarity=0.275 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|... | -.+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 466788888889999999999999999996 9999999999753 5 357777653 0
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
.++.|++++ .|++|=+-+.++.+++++++ +.-||.=+|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999988888887743 455666665
No 84
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.62 E-value=2.1 Score=47.35 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457899999999999999999999999999999999998643 65 578888631 10 0 0
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEE-cc-------CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIG-TS-------GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 514 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG-~S-------~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~ 514 (644)
......+|.|+++. .|+++= +. ..-+.|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 01123479898886 787761 11 134689999999995 5677776654 4455555442
Q ss_pred c--cCCcEEEeeCCCC--CCcccCCeeecccCCCccccchhhhHHHHHhCC
Q 006454 515 W--SQGRAIFASGSPF--DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 561 (644)
Q Consensus 515 w--T~GraifASGSPF--~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a 561 (644)
- ..|+...|-=-=| +|. .+.... ..|..+-|=++-....++.
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHH
Confidence 1 2444332211111 111 121111 1378888877755555443
No 85
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.31 E-value=2.3 Score=44.69 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
No 86
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.26 E-value=0.69 Score=48.14 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=54.6
Q ss_pred HHHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh
Q 006454 368 LAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 446 (644)
Q Consensus 368 LAgll~Alr~-~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 446 (644)
..|++++++. .+..+++.+++++|||.+|-+++..+.. .|+ .+|+++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777774 5778999999999999888888877763 364 679999884 122 22222222
Q ss_pred cccc-CCC-CCHHHHHhccCCcEEEEccCCC
Q 006454 447 AHEH-EPV-KELVDAVNAIKPTILIGTSGQG 475 (644)
Q Consensus 447 A~~~-~~~-~~L~eaV~~vkPtvLIG~S~~~ 475 (644)
.... -+. .++.+.+. +.|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhccc--cCCEEEECCcCC
Confidence 1110 011 12334444 489999887765
No 87
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.25 E-value=0.89 Score=44.44 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999864 76 789999997
No 88
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.25 E-value=1.3 Score=47.33 Aligned_cols=126 Identities=19% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc---CCCCCHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 459 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 459 (644)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34699999999999999988764 354 24999997521111111012222 1111110 1124565 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 006454 460 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 523 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifA 523 (644)
++. .|++|=+.+.+.. +-+++.+.|.+++..-+++=.|||.. .....++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 665 8988877665432 23488999999999997888899982 33455555542 134777
Q ss_pred eCC
Q 006454 524 SGS 526 (644)
Q Consensus 524 SGS 526 (644)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 764
No 89
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=90.22 E-value=6.7 Score=43.65 Aligned_cols=265 Identities=21% Similarity=0.329 Sum_probs=131.9
Q ss_pred CCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHH---------HHHHHhc-CCCccceecccCCCCcHH
Q 006454 274 PSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFM---------TAVKQNY-GERILIQVFEDFANHNAF 343 (644)
Q Consensus 274 P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv---------~Av~~~f-Gp~~lIq~fEDf~~~nAf 343 (644)
|...+|.+.+.-..=+++.+||-+. +||+.++.+++ ..+.+.+ |.++.+. .||+....+|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK-~EdlnptGS~ 89 (397)
T PRK04346 20 PETLMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLK-REDLNHTGAH 89 (397)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEE-ECCCCCccch
Confidence 3334455555544456677777553 56666666654 2355566 5677788 8888777777
Q ss_pred HHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEE-eCcChHHHHHHHHHHHHHHHhcCCC------hh
Q 006454 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF-LGAGEAGTGIAELIALEISKQTNMP------LE 416 (644)
Q Consensus 344 ~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~-~GAGsAG~GIA~ll~~~m~~~~Gls------~e 416 (644)
++ | .++.-++.| +..|+ .+++. .|||..|+++|-..... |+. +.
T Consensus 90 K~--r-----------------~al~~~l~A-~~~Gk----~~vIaetgaGnhG~A~A~~aa~~-----Gl~c~I~mp~~ 140 (397)
T PRK04346 90 KI--N-----------------NVLGQALLA-KRMGK----KRIIAETGAGQHGVATATAAALL-----GLECVIYMGAE 140 (397)
T ss_pred HH--H-----------------HHHHHHHHH-HHcCC----CeEEEecCcHHHHHHHHHHHHHc-----CCcEEEEecCC
Confidence 64 1 123333333 23343 36666 69999988888766543 541 11
Q ss_pred h-hc------------CeEEEEccCCcccCCCccCCchhhhhhcccc-------------CCC--------CCH-HHHHh
Q 006454 417 E-TR------------KKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-------------EPV--------KEL-VDAVN 461 (644)
Q Consensus 417 e-Ar------------~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-------------~~~--------~~L-~eaV~ 461 (644)
. .| -++..|++ |- ...++..+...+.|+.+. .+. +++ .|+.+
T Consensus 141 d~~rq~~nv~~m~~lGA~Vv~v~~-g~--~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~e 217 (397)
T PRK04346 141 DVERQALNVFRMKLLGAEVVPVTS-GS--RTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKA 217 (397)
T ss_pred chhhhhhHHHHHHHCCCEEEEECC-CC--CCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHH
Confidence 0 00 02455553 10 000011112222233210 111 111 36655
Q ss_pred cc------CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCC
Q 006454 462 AI------KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD 535 (644)
Q Consensus 462 ~v------kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~G 535 (644)
++ +||++|-+.+.||...- +...... .+.|=|.+.- |....--+.+.+-.++.|+..+.-|+-.-...
T Consensus 218 Q~~~~~g~~pD~vVa~VGgGg~~~G-i~~~f~~-~~~v~iigVE-~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~--- 291 (397)
T PRK04346 218 QILEKEGRLPDAVVACVGGGSNAIG-IFHPFID-DESVRLIGVE-AAGKGLETGKHAATLTKGRPGVLHGAKTYLLQ--- 291 (397)
T ss_pred HHHHhhCCCCCEEEEecCccHhHHH-HHHHHhh-CCCCeEEEEe-cCCCccccccccchhhcCCeeeeccccceecc---
Confidence 44 69999988887753322 1111211 2333333321 22111223445555666666555553111110
Q ss_pred eeecccCCCcccc------chhhhHHHH--H-h---CCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006454 536 NVFVPGQANNAYI------FPGLGLGLI--M-S---GAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 596 (644)
Q Consensus 536 k~~~p~Q~NN~yi------FPGiglG~l--~-s---~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 596 (644)
+..||.-..+- +||+|-... . + ....|||+-.++|.+.|+.. .-|+|-++.
T Consensus 292 --~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~--------eGIi~~~es 354 (397)
T PRK04346 292 --DEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRL--------EGIIPALES 354 (397)
T ss_pred --cCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH--------cCCEeccHH
Confidence 12334433333 488874332 1 1 23569999999999999853 247777764
No 90
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.22 E-value=0.69 Score=48.02 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=65.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh---h-hcc---c--------
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK---P-WAH---E-------- 449 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~---~-fA~---~-------- 449 (644)
+||.|+|+|..|.+||..++.. | .+++++|.+ .. .++..+. + +.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~----~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK----QE---QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC----HH---HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 5799999999999999988753 5 358888874 11 1221111 0 000 0
Q ss_pred ------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEe
Q 006454 450 ------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 523 (644)
Q Consensus 450 ------~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifA 523 (644)
.....++.|+++. .|++|=+-...-...+++++.+.+......|++ ||.++ ..+++..+..+-..=|.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0112467777776 788875433221224455555655555444443 33222 34444444433222244
Q ss_pred eCCCCCCcc
Q 006454 524 SGSPFDPFE 532 (644)
Q Consensus 524 SGSPF~pV~ 532 (644)
...+|.||.
T Consensus 137 g~h~~~Pv~ 145 (288)
T PRK09260 137 AMHFFNPVH 145 (288)
T ss_pred EEecCCCcc
Confidence 445676663
No 91
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.17 E-value=0.63 Score=51.08 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 567889999999999999999999864 76 789999986
No 92
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.16 E-value=1 Score=50.03 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=72.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc------CCCCCHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH------EPVKELVDA 459 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~------~~~~~L~ea 459 (644)
||.|+|||+.|.+.+- +..+..... .+-.+++|+|.+- ++.+.+...-+.++... ....++.|+
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 111211111 1235899999752 22111111111121111 113578899
Q ss_pred HhccCCcEEEEccCCCC---------------CCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 006454 460 VNAIKPTILIGTSGQGR---------------TFT---------------------KEVVEAMASLNEKPIIFSLSNPTS 503 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g---------------~Ft---------------------eevv~~Ma~~~erPIIFaLSNPts 503 (644)
++. .|++|=.-..++ +|. .++.+.|.++|.+.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 887775444221 121 26777777888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC-CC
Q 006454 504 QSECTAEEAYTWSQGRAIFASG-SP 527 (644)
Q Consensus 504 ~aEct~edA~~wT~GraifASG-SP 527 (644)
..+| +-+++.++ .-++.+| +|
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcH
Confidence 3332 33346665 5577777 44
No 93
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.13 E-value=1.2 Score=47.58 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsA-G~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-.|++.=|+..+.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 346788889999999999999999999999998 9999999864 243 46666542
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999997775
No 94
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.11 E-value=0.87 Score=48.79 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=74.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cCCCCCHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDAV 460 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~eaV 460 (644)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...++.-++.+. ..+... -....++ |++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988653 365 23999997532221111112211 111111 1112466 567
Q ss_pred hccCCcEEEEccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--Cc
Q 006454 461 NAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GR 519 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--Gr 519 (644)
+. .|++|=+.+.++.- -+++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 65 89998666554322 2478888888998778999999982 22334444442 13
Q ss_pred EEEeeCC
Q 006454 520 AIFASGS 526 (644)
Q Consensus 520 aifASGS 526 (644)
-+|++|.
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4666663
No 95
>PRK15076 alpha-galactosidase; Provisional
Probab=89.76 E-value=0.92 Score=50.64 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch-hhhhhccccCC-----CCCHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHEP-----VKELVD 458 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~-~k~~fA~~~~~-----~~~L~e 458 (644)
.||.|+|||+.|. +..++..+....++ +-..++|+|.+- +|.+.... .+..++..... ..++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333322233 235899999752 22110000 11111111111 257888
Q ss_pred HHhccCCcEEEEccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 006454 459 AVNAIKPTILIGTSGQGRTF-------------------------------------TKEVVEAMASLNEKPIIFSLSNP 501 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~F-------------------------------------teevv~~Ma~~~erPIIFaLSNP 501 (644)
+++. .|++|=..++||.- =.++++.|.++|...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 78777555554311 14778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeC-CCCC
Q 006454 502 TSQSECTAEEAYTWSQGRAIFASG-SPFD 529 (644)
Q Consensus 502 ts~aEct~edA~~wT~GraifASG-SPF~ 529 (644)
.. +..+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 2222333553 34577777 6643
No 96
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.75 E-value=1.5 Score=46.97 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-.|++..++..+.+|+..++|++|.+. .|..+|.+|.. .| -.+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 45678899999999999999999999999998 89999998864 24 346777753
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247788876 99999999999999999775
No 97
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.63 E-value=0.45 Score=51.40 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|++.||+++|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468889999999999999999998764 76 789999996
No 98
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.53 E-value=1.1 Score=47.69 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-.|++.=++..+.+++..+++++|-+ .-|.-+|.++.. .| ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC------------
Confidence 34567888889999999999999999999999 788888887754 24 346677653
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0358889986 99999999989999999973
No 99
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.41 E-value=2.6 Score=48.59 Aligned_cols=163 Identities=22% Similarity=0.216 Sum_probs=107.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDA 459 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~ea 459 (644)
..+--++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|=+--.+|+.. -+.+=..|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHH
Confidence 355679999999999999998875 487 48899988776 566665677766677743 122213355
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCee
Q 006454 460 VNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNV 537 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~ 537 (644)
++. .+++..+|-|. +.|.+||..+=+
T Consensus 77 l~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~----------------------------------- 104 (532)
T COG0578 77 LAE-----------------REVLLRIAPHLVEPLPFLLPHLPGL----------------------------------- 104 (532)
T ss_pred HHH-----------------HHHHHHhCccccccCcCeEeccCCc-----------------------------------
Confidence 543 47788887665 344556554310
Q ss_pred ecccCCCccccchhhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHHHHHHHHH
Q 006454 538 FVPGQANNAYIFPGLGLGLIMSGA-IRV--HDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYE 614 (644)
Q Consensus 538 ~~p~Q~NN~yiFPGiglG~l~s~a-~~I--td~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~aVa~~A~~ 614 (644)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-.- .+ ++...++++.|.+
T Consensus 105 -----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~ 176 (532)
T COG0578 105 -----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAE 176 (532)
T ss_pred -----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHh
Confidence 0125778899999999993 222 22233335666666676666655888997653 32 3667788999998
Q ss_pred cCC
Q 006454 615 LGL 617 (644)
Q Consensus 615 ~Gl 617 (644)
.|-
T Consensus 177 ~Ga 179 (532)
T COG0578 177 HGA 179 (532)
T ss_pred ccc
Confidence 884
No 100
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.39 E-value=2.5 Score=45.20 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc
Q 006454 370 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 449 (644)
Q Consensus 370 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 449 (644)
|.+++...... ...+++++|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555444322 346899999999998888877543 244 679988873 222 22333333211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006454 450 ----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 511 (644)
Q Consensus 450 ----~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 511 (644)
.....++.++++. .|++|-++... ..|+.+.++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678899975 99999765432 245655554 222444444322 246666654
No 101
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.38 E-value=3.3 Score=45.78 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 455568889999888889999999999999999999999998643 65 57788852 111 00
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY 513 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG---~S~-----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~ 513 (644)
......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|. -+.-=|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999876 888871 111 34689999999995 6677776554 455555554
No 102
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.35 E-value=0.64 Score=42.91 Aligned_cols=35 Identities=37% Similarity=0.596 Sum_probs=30.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 889999997
No 103
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.88 E-value=0.94 Score=48.17 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=54.7
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc
Q 006454 370 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 447 (644)
Q Consensus 370 gll~Alr~~g--~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA 447 (644)
|++.+|+..+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++ +.+|.. +....|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~---~La~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAE---ELADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHH---HHHHHhh
Confidence 5677888766 456689999999999999998887753 64 78999998 444432 2333333
Q ss_pred ccc-----CCCCCHHHHHhccCCcEEEEccCCC
Q 006454 448 HEH-----EPVKELVDAVNAIKPTILIGTSGQG 475 (644)
Q Consensus 448 ~~~-----~~~~~L~eaV~~vkPtvLIG~S~~~ 475 (644)
+.. ....++.+ .+ ..|+||=+...|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 489999777665
No 104
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.84 E-value=1.7 Score=46.79 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=69.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--ccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
||.|.|| |..|..+|-.|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..|++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998641 11111112444332332221111456788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 006454 463 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLN-EKPIIFSLSNPT 502 (644)
Q Consensus 463 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt 502 (644)
.|+.|=+.+.+ |- .-+++++.|++++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555554 21 1257788888894 999999999997
No 105
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.79 E-value=1.1 Score=46.98 Aligned_cols=120 Identities=20% Similarity=0.329 Sum_probs=72.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----c-----CCCCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----H-----EPVKE 455 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~-----~~~~~ 455 (644)
.||.|+|||..|.++|..++. .|+ . .++|+|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 211 11111111111 0 01235
Q ss_pred HHHHHhccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---
Q 006454 456 LVDAVNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--- 518 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G--- 518 (644)
. ++++. .|++|=+.+.+ | -.-+++++.|.+.+...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 6 45665 89888433333 2 12356777888899999888889998 22333344444 4
Q ss_pred cEEEeeCCCCC
Q 006454 519 RAIFASGSPFD 529 (644)
Q Consensus 519 raifASGSPF~ 529 (644)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56888885443
No 106
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.73 E-value=0.48 Score=45.12 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=50.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh--hhccc---cCC---CCCHH
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 457 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 457 (644)
||.|+|||+.|+.+|..+... | .++.|.+++.-.. +.++..+. .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998763 4 5677777753111 11221111 11110 111 25799
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 006454 458 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 490 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 490 (644)
+++++ +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 333 3245789999998744
No 107
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.59 E-value=1.9 Score=41.95 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCC
Q 006454 375 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 454 (644)
Q Consensus 375 lr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~ 454 (644)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999743 64 6888888521 110 1111111235
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEE
Q 006454 455 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAI 521 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~-w-T~Grai 521 (644)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 88887432 224799999999995 5556665554 5555554432 1 345554
No 108
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.52 E-value=2 Score=42.92 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc---c-c----CCCCCH
Q 006454 386 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---E-H----EPVKEL 456 (644)
Q Consensus 386 riv~~G-AGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~-~----~~~~~L 456 (644)
||.|+| +|..|..+|..+.+. | .+++++|+. .+ .+......+.+ . . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~---~~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE---KAEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH---HHHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998652 4 467777763 11 12222211111 0 0 011356
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 504 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~ 504 (644)
.|+++. +|++| ++... ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78766 44433 3457888888654344799999999854
No 109
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.18 E-value=0.94 Score=45.41 Aligned_cols=110 Identities=17% Similarity=0.316 Sum_probs=69.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-CC-----CCCHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELVDA 459 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~ea 459 (644)
||+|+||||+- ...++...+.+...++ .+.|+|+|.+ ..|-+.+...-+.++++. .+ ..++.||
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 79999999995 4456666555544553 4689999986 233221223333444332 12 2589999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 006454 460 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 503 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 503 (644)
++. +|..|=.-.+| |.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887444333 2221 48899999999999999999998
Q ss_pred CCCCCH
Q 006454 504 QSECTA 509 (644)
Q Consensus 504 ~aEct~ 509 (644)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 55553
No 110
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.98 E-value=2.8 Score=45.23 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=64.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc---hhhhhhcccc------C-
Q 006454 385 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ---HFKKPWAHEH------E- 451 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~---~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~---~~k~~fA~~~------~- 451 (644)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-++..+.-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 3333345321 224467999988775531122 1222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006454 452 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 452 ~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 497 (644)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +.+++|.+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVta 121 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVTS 121 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEEC
Confidence 012688888878899999999633 33333334444 56788863
No 111
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.43 E-value=4.4 Score=43.85 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 006454 364 ASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 425 (644)
Q Consensus 364 aaVvLAgll~Alr------------------~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv 425 (644)
|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++..+
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~~ 171 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIGY 171 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEE
Confidence 4456777777777 556788999999999999999999998654 65 57888
Q ss_pred ccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCCHHHHHHHH
Q 006454 426 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFTKEVVEAMA 487 (644)
Q Consensus 426 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Fteevv~~Ma 487 (644)
|+. ..+. ... ........+|.|.++. .|++.-. ...-|.++++-+..|.
T Consensus 172 d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 172 DPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 873 1211 000 0111234678898886 8888754 2223688888888884
No 112
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.36 E-value=1.3 Score=49.70 Aligned_cols=130 Identities=15% Similarity=0.243 Sum_probs=75.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCC-----CCCHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 457 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~-~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 457 (644)
.||+|+||||+ -.-.|+..+.+. ..++ ...|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444555555432 2342 47899999863 3322122222233322 112 25788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 006454 458 DAVNAIKPTILIGTS--------------------------GQGRTF--------TKEVVEAMASLNEKPIIFSLSNPTS 503 (644)
Q Consensus 458 eaV~~vkPtvLIG~S--------------------------~~~g~F--------teevv~~Ma~~~erPIIFaLSNPts 503 (644)
||++. +|..|=.- |.||.| -.++++.|.+.|..-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 77665322 333322 258888899999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeCCCCC
Q 006454 504 QSECTAEEAYTWSQGRAIFASGSPFD 529 (644)
Q Consensus 504 ~aEct~edA~~wT~GraifASGSPF~ 529 (644)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322112344455544555543
No 113
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.90 E-value=4.1 Score=43.82 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=78.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
-||+|.|| |..|..+|..|+. .|+--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 9999999998765 244100111379999985411 111100122211122111111257888898
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 006454 462 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 524 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPts~aEct~edA~~wT~G--raifAS 524 (644)
. +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 6 9998866666422 23 56778888885 688999999997 3444445555422 112556
Q ss_pred CCCCC
Q 006454 525 GSPFD 529 (644)
Q Consensus 525 GSPF~ 529 (644)
|.=.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 64333
No 114
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.72 E-value=2.1 Score=46.49 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457889999999999999999998764 76 789999997
No 115
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.67 E-value=1.9 Score=43.15 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
++.||.|+|+|..|..+|..++.. |.. -.++++++++. + .+.+...+..|- .....++.|++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888642 310 12346666542 0 112333333331 1123567888875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeC
Q 006454 463 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASG 525 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~-GraifASG 525 (644)
.|++| ++..+. .-+++++.++.+-+..+|+.++.-. +.++.-+|.+ +..++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78776 444443 4589999988653445777777655 3444444443 34555565
No 116
>PRK14851 hypothetical protein; Provisional
Probab=86.59 E-value=2.5 Score=50.05 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC--Cc-----cCCchhhhhhccc---
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS--RL-----ESLQHFKKPWAHE--- 449 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~--R~-----~~L~~~k~~fA~~--- 449 (644)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-.++ |. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 568899999999999999999999875 76 789999987332221 10 1111122222211
Q ss_pred -c----------CCC--CCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEecC----------CCCCCC
Q 006454 450 -H----------EPV--KELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS----------NPTSQS 505 (644)
Q Consensus 450 -~----------~~~--~~L~eaV~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS----------NPts~a 505 (644)
. ..+ .++.+.+++ .|++|-+..-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246666765 89988554321 12 344677778888999999754 665
Q ss_pred CCCHHHHhcccCC
Q 006454 506 ECTAEEAYTWSQG 518 (644)
Q Consensus 506 Ect~edA~~wT~G 518 (644)
..+.++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5788888888777
No 117
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=86.56 E-value=4.2 Score=43.79 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=80.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
||.|+|| |..|..+|..|+. .|+-..+..-.+.|+|.+.-. .++..-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999988764 244100000169999974221 1111112444332332111111255677776
Q ss_pred cCCcEEEEccCCCCC--C------------CHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeC
Q 006454 463 IKPTILIGTSGQGRT--F------------TKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 525 (644)
Q Consensus 463 vkPtvLIG~S~~~g~--F------------teevv~~Ma~~-~erPIIFaLSNPts~aEct~edA~~wT~G--raifASG 525 (644)
.|++|=+.+.+.. - =+++++.|+++ +..-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866665421 1 24677888888 4899999999997 4445555565532 2378888
Q ss_pred CCCCCc
Q 006454 526 SPFDPF 531 (644)
Q Consensus 526 SPF~pV 531 (644)
.=.+..
T Consensus 151 t~LDs~ 156 (324)
T TIGR01758 151 TRLDHN 156 (324)
T ss_pred eehHHH
Confidence 655533
No 118
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.38 E-value=4.5 Score=43.48 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=67.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccC--CCCCHHHHHhc
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~eaV~~ 462 (644)
||.|+|| |..|..+|-.|+. .|+ -..+.|+|.+ + .++-.-+|.+-. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 365 3679999998 3 222211254433 1111111 11346677876
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 463 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 463 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
.|+.|=+.|.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666654 21 1246777888899999999999998
No 119
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.38 E-value=1.8 Score=46.03 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=72.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc-c--cCCCCCHHHHHh
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-E--HEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~--~~~~~~L~eaV~ 461 (644)
.||.|+|+|..|.++|-.++. .|+ + +++++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 489999999999999998764 254 2 499999832221111000110 001000 0 011246766 55
Q ss_pred ccCCcEEEEccCCCC----C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 006454 462 AIKPTILIGTSGQGR----T------FT----KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 525 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g----~------Ft----eevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifASG 525 (644)
. .|++|=+.+.+- . ++ +++++.|.+++...+|+-.|||. .....-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 788775555331 1 22 45666788889999999999998 445555566632 12377776
Q ss_pred C
Q 006454 526 S 526 (644)
Q Consensus 526 S 526 (644)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 120
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.27 E-value=3 Score=44.49 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-+|++.=|+..+.+++.+++|++|-+ ..|.-+|.+|.. .|. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888889999999999999999999998 889999988864 242 35556553 1
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246777886 99999999999999999997
No 121
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.99 E-value=3.1 Score=44.43 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-.|++.-|+..|.+++.++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-------------
Confidence 3567888889999999999999999999975 468888887753 24 346677642
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
..+|.+.+++ +|++|...+.++.|+.++|+
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999985
No 122
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.88 E-value=1.8 Score=45.58 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|++.+++..|.+. +.++|++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999888877754 365 679999984
No 123
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.73 E-value=2.7 Score=44.90 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-+|++.=|+..+.+++.+++|++|.+. .|.-+|.||...-. ..| -.+..|+++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t------------ 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT------------ 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc------------
Confidence 35678889999999999999999999999764 67777777753100 012 3466666531
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.+|.+.++. +|++|+..+.++.+++++|+
T Consensus 196 ------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 ------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358888987 99999999999999999984
No 124
>PRK07411 hypothetical protein; Validated
Probab=85.52 E-value=2.2 Score=47.01 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 567889999999999999999999875 76 789999987
No 125
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.51 E-value=3.6 Score=41.87 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=70.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
.||.|+|+|..|..+|..+... |. ...+++++|+.. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888643 43 125688887631 1122222222 11122467777764
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCccc
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 533 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~ 533 (644)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=++..-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHHH
Confidence 77766 44433 45788888887654 458889999773 3444455432222223455555433
No 126
>PLN02306 hydroxypyruvate reductase
Probab=85.47 E-value=6.8 Score=43.37 Aligned_cols=203 Identities=17% Similarity=0.221 Sum_probs=111.7
Q ss_pred HHHHHHHcCCCceeecCC---cchHHHHHHHHHHHHHHh---------------------CCCCCCceEEEeCcChHHHH
Q 006454 343 FDLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKFL---------------------GGSLADQRFLFLGAGEAGTG 398 (644)
Q Consensus 343 f~lL~ryr~~~~~FNDDi---QGTaaVvLAgll~Alr~~---------------------g~~L~d~riv~~GAGsAG~G 398 (644)
.++-.--+..+.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..
T Consensus 100 iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 179 (386)
T PLN02306 100 VDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSA 179 (386)
T ss_pred ccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHH
Confidence 444333345677777532 234445677777776531 34588999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc--------c--cCCCCCHHHHHhccCCcEE
Q 006454 399 IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--------E--HEPVKELVDAVNAIKPTIL 468 (644)
Q Consensus 399 IA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--------~--~~~~~~L~eaV~~vkPtvL 468 (644)
+|+++..+| |+ +++.+|+..- . .+..+...+.. + .....+|.|+++. .|++
T Consensus 180 vA~~l~~~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV 240 (386)
T PLN02306 180 YARMMVEGF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVI 240 (386)
T ss_pred HHHHHHhcC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEE
Confidence 999986443 54 5888887421 0 01111111100 0 0112479999986 9998
Q ss_pred EEc----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEeeCC-CC--CCcccCCeeec
Q 006454 469 IGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAIFASGS-PF--DPFEYGDNVFV 539 (644)
Q Consensus 469 IG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w--T~GraifASGS-PF--~pV~~~Gk~~~ 539 (644)
+-. ....|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+. .+.|- =| +|. .+. .
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~ 308 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---G 308 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---h
Confidence 873 2334799999999995 445555444 455555555422 24553 32221 01 111 011 0
Q ss_pred ccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 006454 540 PGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 581 (644)
Q Consensus 540 p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 581 (644)
-=+..|+.+-|=+|-...-+ ...|...+++-+.....
T Consensus 309 L~~~pNVilTPHiag~T~e~-----~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 309 LADMKNAVVVPHIASASKWT-----REGMATLAALNVLGKLK 345 (386)
T ss_pred HhhCCCEEECCccccCcHHH-----HHHHHHHHHHHHHHHHc
Confidence 12456888888876322111 23444445555544443
No 127
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.42 E-value=0.92 Score=45.83 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|+..||+++|+|..|..||..|+.. |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 357889999999999999999999764 76 789999997
No 128
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.17 E-value=3.2 Score=43.63 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=63.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhcc-C
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-K 464 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v-k 464 (644)
||-|+|.|..|..+|..+... | .++.++|+. . +..+..+.. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~---~~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----Q---DAVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----H---HHHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988652 5 356667763 1 112222211 112234666666543 5
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 510 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEct~e 510 (644)
||++|= +-..+ ..+++++.++.. .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 789999888765 4568999999865 455544
No 129
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=84.66 E-value=23 Score=42.37 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCceeecCCcchHHHHHHHHHHHHHHh---CCCCCCceEEEeCcChHHHHHHHHHHHH
Q 006454 352 THLVFNDDIQGTASVVLAGLISAMKFL---GGSLADQRFLFLGAGEAGTGIAELIALE 406 (644)
Q Consensus 352 ~~~~FNDDiQGTaaVvLAgll~Alr~~---g~~L~d~riv~~GAGsAG~GIA~ll~~~ 406 (644)
++-+=.+|.+.|++.=.=+.++.+... |+ +..|+-.|+|-.|+++|-.....
T Consensus 348 ~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~---~~~IvetssGNhG~AlA~aaA~~ 402 (695)
T PRK13802 348 RVFLKREDLNHTGAHKINNALGQALLVKRMGK---TRVIAETGAGQHGVATATVCAML 402 (695)
T ss_pred eEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC---CCEEEEECcHHHHHHHHHHHHHc
Confidence 455557888888876554444443333 43 24555679999999998776543
No 130
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.64 E-value=4.9 Score=43.25 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=66.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. .++..-+|.+...++.+...-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 254100011379999985322 111111244433233221111134567777
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 006454 462 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPT 502 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt 502 (644)
+ .|++|=+.+.+.. .| +++...+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 8998866655321 23 46777788888 489999999997
No 131
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=84.63 E-value=0.38 Score=46.30 Aligned_cols=89 Identities=22% Similarity=0.370 Sum_probs=49.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-------------CcccCCCccCCchhhhhhcc
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-------------GLIVSSRLESLQHFKKPWAH 448 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~-------------GLi~~~R~~~L~~~k~~fA~ 448 (644)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 4568999999999999999998653 53 34444542 0001 00000000 00222
Q ss_pred c----cCC--CCCHHHHHhccCCcEEEEcc-----CCCCCCCHHHHHHHH
Q 006454 449 E----HEP--VKELVDAVNAIKPTILIGTS-----GQGRTFTKEVVEAMA 487 (644)
Q Consensus 449 ~----~~~--~~~L~eaV~~vkPtvLIG~S-----~~~g~Fteevv~~Ma 487 (644)
. +.. ...|.+.++. .|++|+.. ..+-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 111 1368888886 79999753 344589999999995
No 132
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.63 E-value=3.8 Score=43.83 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-+|++.=|+..|.+++.++++|+|. |..|.-+|.+|... |. .+.++.++ .
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C-----
Confidence 346777888888999999999999999999 99999999999753 53 34554321 1
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.+|.+.+++ +|++|-.-+.++.+++++++
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 268888987 99999999999999987743
No 133
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.46 E-value=23 Score=36.73 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=61.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
+..||.|+|+|.-|..||+.+... |.- ...+++++|+. . .+.++..+..|- .....+..|+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~ 65 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD 65 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc
Confidence 346899999999999999988653 410 12457766652 1 011222222221 1123467777764
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhccc
Q 006454 463 IKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEct~edA~~wT 516 (644)
.|++| ++-.+ ...+++++.+... .+..+|..+++-+ ++++..+|.
T Consensus 66 --aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 --ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred --CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC-----CHHHHHHHc
Confidence 67655 33333 3456677777643 4567888776655 345555554
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.45 E-value=2.3 Score=48.81 Aligned_cols=167 Identities=15% Similarity=0.205 Sum_probs=85.0
Q ss_pred cccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHHHHHHHHcCCCceee--cCCcchHHH
Q 006454 289 EKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASV 366 (644)
Q Consensus 289 e~LL~DplYlG~r~~R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV 366 (644)
+.|.++-.++|+=|+-.. .++++.+.+. .-.+|- ||.+-. + +|- .+..+|. .-|.|-.+|
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l~~k------~it~ia-~E~vpr-----i-sra-q~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKLAAK------NITVLA-MDAVPR-----I-SRA-QKLDALSSMANIAGYRAI 141 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHHHHc------CCEEEE-eecccc-----c-ccC-CccCcchhhHHHHHHHHH
Confidence 345566677777775332 3333333222 233455 665531 0 111 1222222 345566666
Q ss_pred HHHHHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 367 VLAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 367 vLAgll~Alr~~g-----~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
..|+-.-.-...| ......|++++|+|.+|+..+..+.. .|. ++.++|.+.-... +.+.+..
T Consensus 142 i~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rle-~a~~lGa 208 (511)
T TIGR00561 142 IEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVKE-QVQSMGA 208 (511)
T ss_pred HHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHHH-HHHHcCC
Confidence 5554332222222 13456899999999999988777654 252 3777777542110 0000100
Q ss_pred ------------hhhhhccccCCC------CCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHc
Q 006454 442 ------------FKKPWAHEHEPV------KELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMAS 488 (644)
Q Consensus 442 ------------~k~~fA~~~~~~------~~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~ 488 (644)
...-||+...+. .-+.|.++. .|++|++.-++| +.|+++++.|..
T Consensus 209 ~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 209 EFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred eEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 001122211000 114455554 999999994444 489999999973
No 135
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.29 E-value=3.6 Score=44.15 Aligned_cols=87 Identities=18% Similarity=0.314 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|..|++.=++..+.+++.+++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3466778888899999999999999999764 688888888643211 12 245555542
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358888987 99999999999999999994
No 136
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.10 E-value=4.2 Score=43.54 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 345667778888889999999999999975 467888887753 24 347777753
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788886 99999999999999999987
No 137
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=83.99 E-value=26 Score=39.56 Aligned_cols=179 Identities=22% Similarity=0.219 Sum_probs=120.5
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcH--HHHHHHHcCC-----Ccee----------ecCCcchHHH
Q 006454 304 RAIGQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNA--FDLLEKYGTT-----HLVF----------NDDIQGTASV 366 (644)
Q Consensus 304 R~~g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nA--f~lL~ryr~~-----~~~F----------NDDiQGTaaV 366 (644)
..+..|-.+|...||+++.+.-||+.-|- =+|+...-. --+.+.|+.- .+|| .+----||==
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIp-ApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIP-APDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEec-ccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 36677889999999999999999988888 889875221 1245666531 2222 1222334433
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh
Q 006454 367 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 446 (644)
Q Consensus 367 vLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 446 (644)
+.-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+=|++|-|+... .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHH
Confidence 3344448888899899999999999999999888888642 53 5567779999888763 455333221
Q ss_pred ccc----------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 006454 447 AHE----------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 503 (644)
Q Consensus 447 A~~----------~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 503 (644)
.++ .+...+ |.+-.+..|||+=+.. ++..|++-.+.+.+. +|.=-+| ||+
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t 317 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT 317 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC
Confidence 111 111112 3344467899997666 568999988888532 8888888 763
No 138
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=83.97 E-value=6.2 Score=42.44 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=76.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc--CCCCCHHHHHhc
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 462 (644)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26799999876 2221112444321 11101 011246678887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcccCC--cEEEeeC
Q 006454 463 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQG--RAIFASG 525 (644)
Q Consensus 463 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts-~aEct~edA~~wT~G--raifASG 525 (644)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-++++++= +-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988756555421 11467777888999999999999982 223344455554311 1266666
Q ss_pred C
Q 006454 526 S 526 (644)
Q Consensus 526 S 526 (644)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 4
No 139
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=83.82 E-value=4.6 Score=39.67 Aligned_cols=84 Identities=15% Similarity=0.321 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
---+|-.|++.-|+..+.+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------- 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------- 69 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-------------
Confidence 34578888899999999999999999999985 888888887642 42 35566653
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 -----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 -----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred -----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777875 99999999999999998886
No 140
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.63 E-value=4.3 Score=44.45 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=61.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCC--CCCH-H
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKEL-V 457 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L-~ 457 (644)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|++.- +.+.+....+...... ..+. .
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~------~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEE------DQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCch------HHHHHHHHHHHhcCCEEEeCCcch
Confidence 36778999999999999999988753 6 46999998530 1111111111100000 0011 1
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006454 458 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 526 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 526 (644)
+.+. ++|++|-.++.. .-.+++..+= + ..-||+ +..|+...+ ...+.|-.|||
T Consensus 64 ~~~~--~~d~vv~~~g~~-~~~~~~~~a~-~-~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 64 EFLE--GVDLVVVSPGVP-LDSPPVVQAH-K-KGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hHhh--cCCEEEECCCCC-CCCHHHHHHH-H-CCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 2233 489888766653 4455555442 2 345665 233333322 23678899998
No 141
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.62 E-value=1.3 Score=45.62 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=59.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc--c-CCCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--H-EPVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~-~~~~~L 456 (644)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+ +|+.+ .-|... + .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SLS---NLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-ccc---Ccccc-eeeeHhhCCCcHHHHH
Confidence 467889999999999999999999764 76 78999999722 221 24322 111111 1 111245
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPT 502 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt 502 (644)
.+.++.+.|++-|-.-. ..++++-+...-+ +--+|+ +.-||.
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~ 126 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVE 126 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHH
Confidence 66666677776655432 2345443333211 223444 555554
No 142
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.33 E-value=3.7 Score=44.06 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~G-AGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=|+..+.+++.++++|+| .|..|..+|.+|... |. .+++++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4667788888889999999999999999 999999999999752 53 46666542 11
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 482 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteev 482 (644)
+|.|++++ .|++|-+-+.+..+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 37788886 899998888777666655
No 143
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.27 E-value=2.4 Score=44.07 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=57.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh-----hcc------ccCCCC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-----WAH------EHEPVK 454 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~-----fA~------~~~~~~ 454 (644)
||.|+|+|..|..+|..|... | .+++++|+..-. ++..++. +.. ......
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQ-------AAEINADRENPRYLPGIKLPDNLRATT 63 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHH-------HHHHHHcCcccccCCCCcCCCCeEEeC
Confidence 799999999999999998752 4 357788874211 1111110 000 001124
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006454 455 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 503 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 503 (644)
++.|+++. +|++| ++... ...+++++.+... .+.-+|..++|-..
T Consensus 64 ~~~~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 64 DLAEALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CHHHHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 67777765 67766 33322 3578888887754 34568888887543
No 144
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.25 E-value=1.7 Score=45.81 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4799999999999999998753 4 347777773
No 145
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.09 E-value=7.7 Score=43.13 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=60.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccC---CCCCHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---PVKELVD 458 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~---~~~~L~e 458 (644)
+..+||+|+|.|-.|+++|++|.. .|. .+.++|.+-- ......-.......- ......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999999865 363 5788886420 011110001111000 0011223
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006454 459 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 526 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 526 (644)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++++.+.+.|-.|||
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC
Confidence 343 478766444443 22455555543 446775 2233 3444445678989998
No 146
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.83 E-value=2.8 Score=44.06 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=70.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc----CCchhhhhhcccc---CCCCCHHHH
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE----SLQHFKKPWAHEH---EPVKELVDA 459 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~----~L~~~k~~fA~~~---~~~~~L~ea 459 (644)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999987764 255 1 69999986 22210 011110 000000 011355 45
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc---EEE
Q 006454 460 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR---AIF 522 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Gr---aif 522 (644)
++. .|++|=+.+.+.. .-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 8888844333321 2347888899999999999999998 33344455554 32 477
Q ss_pred eeCC
Q 006454 523 ASGS 526 (644)
Q Consensus 523 ASGS 526 (644)
++|.
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 7774
No 147
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.82 E-value=14 Score=39.86 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=97.4
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH-------------------------hCCCCCCceEEEeCcChHHHHHHHH
Q 006454 351 TTHLVFNDDI---QGTASVVLAGLISAMKF-------------------------LGGSLADQRFLFLGAGEAGTGIAEL 402 (644)
Q Consensus 351 ~~~~~FNDDi---QGTaaVvLAgll~Alr~-------------------------~g~~L~d~riv~~GAGsAG~GIA~l 402 (644)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4566666321 23444567777776654 2456899999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCC
Q 006454 403 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTF 478 (644)
Q Consensus 403 l~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~F 478 (644)
+... |+ +++.+|+.. + . .. ...+. ....+|.|+++. .|+++=.-- .-+.|
T Consensus 169 l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 8643 64 578888741 1 1 10 11111 122479999886 898874421 13688
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHH
Q 006454 479 TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLG 555 (644)
Q Consensus 479 teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~-~w-T~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG 555 (644)
+++.+..|. +..++.=.|. .++--|+|+ ++ ..|+.-.|.=-=|++=-..+..+ =+..|+.+-|=+|-.
T Consensus 223 ~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL--~~~~nvilTPHia~~ 292 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEEL--FSLKNVVLAPHIGSA 292 (333)
T ss_pred CHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchh--hcCCCEEECCcCCcC
Confidence 999999884 5667776654 333333333 22 35655443211111100011111 134688888888743
No 148
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.72 E-value=6 Score=42.37 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc
Q 006454 370 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 449 (644)
Q Consensus 370 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 449 (644)
|.+++..... -..++++++|+|..|..++..+... .++ +++.++|+. .+ +.+.+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~---~a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA---KAEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHhhc
Confidence 4455555432 2347999999999988777766542 243 678888773 22 233333333221
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006454 450 ----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 511 (644)
Q Consensus 450 ----~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 511 (644)
.....++.++++. .|++|-++... ..|+.+.++. .--|.++ |+--.+-|+.++-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678899985 89998764433 3556655542 1123333 3333346887765
No 149
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.56 E-value=6.1 Score=42.20 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-+|++.=++..+.+++.++++++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4678888899999999999999999999764 68888888853 242 46777753
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999987
No 150
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=82.30 E-value=6.8 Score=42.29 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=71.7
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999988764 254110011279999985311 111111243333222221111135567777
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 006454 462 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~e-rPIIFaLSNPts~aEct~edA~~wT 516 (644)
+ .|++|=+.+.+.. .| +++++.+++++. .-||+--|||- ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 8988856555321 22 467778888987 99999999997 34444445544
No 151
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.05 E-value=1.3 Score=44.18 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=48.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCC-----C
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----V 453 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~ 453 (644)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.++ ... .
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 467889999999999999999999875 76 7899999973 2222 23321 12111 011 1
Q ss_pred CCHHHHHhccCCcEEEE
Q 006454 454 KELVDAVNAIKPTILIG 470 (644)
Q Consensus 454 ~~L~eaV~~vkPtvLIG 470 (644)
..+.+.++.+.|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24666777777877553
No 152
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.02 E-value=5.9 Score=40.84 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=55.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC-CccCCch--h-hhhhccccCCCCCHHHHHh
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--F-KKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~-R~~~L~~--~-k~~fA~~~~~~~~L~eaV~ 461 (644)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- . ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 45888877 210000 0000100 0 00000 0011234555544
Q ss_pred ccCCcEEE-EccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006454 462 AIKPTILI-GTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 503 (644)
Q Consensus 462 ~vkPtvLI-G~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 503 (644)
.+|++| .+.+ ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 --~~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 --PFDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 367555 3333 2478999988763 45567888999863
No 153
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.79 E-value=4.6 Score=42.70 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc---CCCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L 456 (644)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.+ +++. |..+-.+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 467899999999999999999999874 76 78999998744332 2442 21111110 011246
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQS 505 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~a 505 (644)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777888766433 2345655554443212234666777766443
No 154
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.78 E-value=4.1 Score=43.60 Aligned_cols=102 Identities=17% Similarity=0.346 Sum_probs=65.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc--ccC-CCCCHHHHHhc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHE-PVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--~~~-~~~~L~eaV~~ 462 (644)
||.|+|||..|.-+|-.|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ... ..++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999988764 255 3689999973111111111233322 2221 100 0134 356776
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 006454 463 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 463 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt 502 (644)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 89888666653 3 23 47788888999999999999997
No 155
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.57 E-value=4.6 Score=43.65 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=25.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|||..|.|||..++.+ |. ++.++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998753 64 57777763
No 156
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.36 E-value=9.3 Score=39.76 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999998653 5 368888874
No 157
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.33 E-value=23 Score=36.20 Aligned_cols=95 Identities=12% Similarity=0.194 Sum_probs=53.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 465 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 465 (644)
||.|+|+|..|..+++-|... |.. .+.+++.|+. .+........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~-------~~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN-------AQIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC-------HHHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988642 532 2456666652 111222222221 01123567777765 5
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 466 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 466 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
|++| ++..+.. .+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6555 3333322 367776652 34556777777655
No 158
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.32 E-value=2 Score=44.30 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999874 76 789999997
No 159
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=81.25 E-value=6.7 Score=42.30 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-+|++.=++..|.+++.+++|++|-+. .|.-+|.||.. .| -.+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 345667788888889999999999999999764 67777777753 24 347777663
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 160
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.98 E-value=2.2 Score=46.59 Aligned_cols=109 Identities=21% Similarity=0.358 Sum_probs=72.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCCCHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 457 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 457 (644)
...-|++++|.|-+|+--|++.+ |+. -++.+.|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888765 442 467778874 233 44444445432 12224699
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHcCC-------CCcEEEecCCCCCCCCCCHHH
Q 006454 458 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLN-------EKPIIFSLSNPTSQSECTAEE 511 (644)
Q Consensus 458 eaV~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~-------erPIIFaLSNPts~aEct~ed 511 (644)
|+|++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99985 9998887 4455678999999996311 111235556777777666554
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.47 E-value=7.2 Score=41.74 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.-++..|.+++.+++|++|.+ ..|.-+|.||... ..| ..+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 467788889999999999999999999975 4688888877531 013 235666653
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888887 99999999999999999987
No 162
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.22 E-value=4.1 Score=42.12 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|++.+++..+...+..+++++|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4556666654555667899999999888777776653 24 368888863
No 163
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.14 E-value=1.5 Score=43.76 Aligned_cols=77 Identities=16% Similarity=0.300 Sum_probs=53.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cC-CCCC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HE-PVKE 455 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~-~~~~ 455 (644)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|... .|... +. ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~rq--fl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGAQ--FLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCCC--ccccHHHcCchHHHH
Confidence 468889999999999999999999864 76 8899999973 2221 23321 12221 11 1235
Q ss_pred HHHHHhccCCcEEEEccC
Q 006454 456 LVDAVNAIKPTILIGTSG 473 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~ 473 (644)
+.+.++.+.|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 788899999998775443
No 164
>PRK05442 malate dehydrogenase; Provisional
Probab=80.08 E-value=11 Score=40.76 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=69.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++-.-+|.+...++-+...-..+..|.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877653 33100001379999985311 1111112444332332221112355677876
Q ss_pred cCCcEEEEccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 006454 463 IKPTILIGTSGQ---GRT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 516 (644)
Q Consensus 463 vkPtvLIG~S~~---~g~-----------Fteevv~~Ma~~~-erPIIFaLSNPts~aEct~edA~~wT 516 (644)
.|++|=+.+. +|- .=+++.+.+++++ ...||+-.|||- ....--+++++
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 8988755554 331 1245667777766 699999999997 33444444443
No 165
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.07 E-value=7.9 Score=41.56 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
.+-.-+|-+|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|+|+.
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~T---------- 193 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSKT---------- 193 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCCC----------
Confidence 344677888899999999999999999999976 468888888754 242 366676531
Q ss_pred chhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 440 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 440 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 194 --------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 --------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred --------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 357888886 99999999999999999997
No 166
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.02 E-value=2.5 Score=39.20 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=53.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---c-CCCCCHHHHHh
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---H-EPVKELVDAVN 461 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~-~~~~~L~eaV~ 461 (644)
||+++|+|.-|.-+|+.|+.. |+ ++|+++|.+-+ ..+ +|..+ .|... + .....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~~---nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-ELS---NLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Ccc---hhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 76 78999998733 221 23322 12211 1 11134667777
Q ss_pred ccCCcEEEEccCCCCCCCHHH-HHHHHcCCCCcEEEecCC
Q 006454 462 AIKPTILIGTSGQGRTFTKEV-VEAMASLNEKPIIFSLSN 500 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~Fteev-v~~Ma~~~erPIIFaLSN 500 (644)
...|.+=|-.-.. .++++. .+.+ .+-.||+.-+.
T Consensus 64 ~~~p~v~i~~~~~--~~~~~~~~~~~---~~~diVi~~~d 98 (143)
T cd01483 64 ELNPGVNVTAVPE--GISEDNLDDFL---DGVDLVIDAID 98 (143)
T ss_pred HHCCCcEEEEEee--ecChhhHHHHh---cCCCEEEECCC
Confidence 7777665543322 233332 2222 34456665444
No 167
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.69 E-value=6.5 Score=43.02 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCC---CCCHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP---VKELVD 458 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~---~~~L~e 458 (644)
++..+++|+|+|..|.++|+.+.+ .|. ++++.|.+- .. ..+....+....-. ...-.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~~----~~---~~~~~~~l~~~g~~~~~~~~~~~ 63 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGKP----FS---ENPEAQELLEEGIKVICGSHPLE 63 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCCC----cc---chhHHHHHHhcCCEEEeCCCCHH
Confidence 567899999999999999888765 363 588888641 11 00110111100000 011122
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006454 459 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 526 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 526 (644)
+... .+|++|=.++.+. -.+++.++.. ..-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 64 ~~~~-~~d~vV~s~gi~~-~~~~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~I~VTGT 116 (447)
T PRK02472 64 LLDE-DFDLMVKNPGIPY-TNPMVEKALE--KGIPII-------TEVEL----AYLISEAPIIGITGS 116 (447)
T ss_pred HhcC-cCCEEEECCCCCC-CCHHHHHHHH--CCCcEE-------eHHHH----HHHhcCCCEEEEeCC
Confidence 2221 3788886665552 3444444443 345665 33442 333445678888998
No 168
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.58 E-value=8.7 Score=41.34 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-.|++.=|+..+.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|+|+ .
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------T----- 194 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------T----- 194 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-------C-----
Confidence 35678888899999999999999999999764 67778777753 24 346777764 1
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 ------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 347787886 99999999999999999987
No 169
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.35 E-value=1.9 Score=50.87 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 567899999999999999999999875 76 79999998643
No 170
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.28 E-value=7.1 Score=42.96 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
...||.|+|||+-|+.+|..+..
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 45799999999999999999975
No 171
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.16 E-value=8.9 Score=41.05 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-+|++.=++..|.+++.+++|++|-+. .|--+|.||.. .| ..+.+|+|+ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C----
Confidence 446778888899999999999999999999764 67788887753 24 346666663 1
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 348888886 99999999999999999987
No 172
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.13 E-value=8.8 Score=41.12 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-+|++.=++..|.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 45677888888899999999999999999764 67777777753 24 346666653
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788886 99999999999999999997
No 173
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=78.96 E-value=4.1 Score=46.08 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4678888888889999999999999777777776653 352 5777776
No 174
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.85 E-value=2.3 Score=43.79 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|++.+|+++|+|..|.-+|+.|+.. |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57789999999999999999999864 76 789999987
No 175
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.67 E-value=15 Score=38.01 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988643 53 68888853
No 176
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.45 E-value=6.2 Score=40.48 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=55.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh-----hccccCCCCCHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-----WAHEHEPVKELVDAV 460 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~-----fA~~~~~~~~L~eaV 460 (644)
||.|+|+|+.|..+|..+.+. | .+++++|+++= +.+.+...... +........++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGA----HLDALNENGLRLEDGEITVPVLAADDPAEL- 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChH----HHHHHHHcCCcccCCceeecccCCCChhHc-
Confidence 799999999999999888652 4 46888887421 10001110000 00000112345443
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 006454 461 NAIKPTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPTS 503 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPts 503 (644)
+ ++|++| ++... .-++++++.++..- +.-+|+.+.|.-.
T Consensus 65 ~--~~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 G--PQDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred C--CCCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 578776 44333 34799999998643 3346677999753
No 177
>PRK07680 late competence protein ComER; Validated
Probab=78.30 E-value=5.3 Score=41.18 Aligned_cols=98 Identities=13% Similarity=0.250 Sum_probs=59.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 465 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 465 (644)
+|.|+|+|..|..+|..+... |.- ...+++++|++ . +........|. ......+..|+++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999888643 420 12467888773 1 11222221110 01112467777764 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 006454 466 TILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 503 (644)
Q Consensus 466 tvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 503 (644)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7775 33333 3468888888754 34568889998763
No 178
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.10 E-value=6.8 Score=42.00 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=76.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc--CCCCCHHHHHhc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 462 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 462 (644)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=..++-.-+|.+.. +|.... ...++.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887753 255 4679999974111111111133322 332211 11145554 665
Q ss_pred cCCcEEEEccCCCCC--CCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 006454 463 IKPTILIGTSGQGRT--FTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 526 (644)
Q Consensus 463 vkPtvLIG~S~~~g~--Fte------------evv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGS 526 (644)
.|++|=+.+.+.. -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+-||++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecCc
Confidence 8988755554321 233 67788889999999999999983 4555555553 1134777765
Q ss_pred C
Q 006454 527 P 527 (644)
Q Consensus 527 P 527 (644)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 179
>PRK06141 ornithine cyclodeaminase; Validated
Probab=78.06 E-value=18 Score=38.52 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc---CCCCCHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 459 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 459 (644)
...+++|+|+|..|..++..+... .++ ++|+++|+. .++ ...+...+.+.. ....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876543 232 678888873 222 333333332211 123678889
Q ss_pred HhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 006454 460 VNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 511 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~ed 511 (644)
+++ .|++|-+++... +|+.+.++ +.-.|-+. |.+..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 975 999987665432 35554443 22244444 4455667888753
No 180
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=77.90 E-value=9.8 Score=38.39 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 460 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~ee-Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 460 (644)
.+++||.|+|.|..+. +|.-++..|.. ++..+- +..-+-+.|..-+++.-- +-..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4569999999998874 88887776642 110000 112232333333332211 112344455542 32212
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHH
Q 006454 461 NAIKPTILIGTSGQGRTFTKEVVEAMA 487 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~Fteevv~~Ma 487 (644)
-+-|++|+.|..|. |+++++++.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 25799999999887 899999874
No 181
>PRK06436 glycerate dehydrogenase; Provisional
Probab=77.60 E-value=31 Score=36.99 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHH
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 458 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 458 (644)
+..|.++++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998664 3 264 5888887521 0101 0 01247889
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 459 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 459 aV~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
+++. .|+++=+- ..-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 88887432 123588999999995 567888777633
No 182
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.35 E-value=24 Score=36.06 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 369 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 369 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
+..+.|++..+. ..+.+++|+|+|..|.-.+.+. .+ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999987765544433 22 364 56887765
No 183
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=77.25 E-value=14 Score=39.29 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 463 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~G-ls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 463 (644)
.||.|+|+|..|-.|+.-|... | ++ ..+|+++|+. .+........|--.. ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~~--~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVVT--TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCcc--cCcHHHHHhh-
Confidence 5899999999998888887763 5 32 3678877763 122223344442211 3455666664
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 517 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~ 517 (644)
.|+++ ++-.| ..=++|++.+....+..+|..+.= =.+.++.-+|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaA-----Gv~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAA-----GVSIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeC-----CCCHHHHHHHcC
Confidence 66666 44444 233466666654455666666553 335555555543
No 184
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.19 E-value=11 Score=42.24 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=50.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC-chhhhhhccccCCCCCHHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL-QHFKKPWAHEHEPVKELVDA 459 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L-~~~k~~fA~~~~~~~~L~ea 459 (644)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++ ......+ ......+... ..-.+-
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~----~~~~~~~l~~~gi~~~~~----~~~~~~ 71 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN----ETARHKLIEVTGVADIST----AEASDQ 71 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC----hHHHHHHHHhcCcEEEeC----CCchhH
Confidence 3556799999999999999999864 363 58888864 1110001 1101111111 111122
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 006454 460 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 495 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 495 (644)
++ ++|.+|=.++.+ --.+++.++.. ...||+
T Consensus 72 ~~--~~d~vV~Spgi~-~~~p~~~~a~~--~gi~v~ 102 (473)
T PRK00141 72 LD--SFSLVVTSPGWR-PDSPLLVDAQS--QGLEVI 102 (473)
T ss_pred hc--CCCEEEeCCCCC-CCCHHHHHHHH--CCCcee
Confidence 33 478888777776 34566665543 445654
No 185
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.15 E-value=11 Score=40.69 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-+|++.=|+..|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 445677888888889999999999999999764 67777777753 2221 01346666553
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 186
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=77.04 E-value=19 Score=38.97 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=73.1
Q ss_pred cCCCceeec-CC--cchHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHH
Q 006454 350 GTTHLVFND-DI--QGTASVVLAGLISAMKF-------------------LGGSLADQRFLFLGAGEAGTGIAELIALEI 407 (644)
Q Consensus 350 r~~~~~FND-Di--QGTaaVvLAgll~Alr~-------------------~g~~L~d~riv~~GAGsAG~GIA~ll~~~m 407 (644)
+..+.+.|- +. +..|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 90 ~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~-- 167 (330)
T PRK12480 90 KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG-- 167 (330)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh--
Confidence 345555553 22 24455567777776663 1345888999999999999999998864
Q ss_pred HHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc-cCC---CCCCCHHHH
Q 006454 408 SKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT-SGQ---GRTFTKEVV 483 (644)
Q Consensus 408 ~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~-S~~---~g~Fteevv 483 (644)
.|. +++.+|+.. +. .. .+.+ ...+|.|+++. .|+++=. ... -+.|.++++
T Consensus 168 ---~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 168 ---FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred ---CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHH
Confidence 253 588888641 10 11 1111 12478888886 7876632 221 146677777
Q ss_pred HHHHcCCCCcEEEecCC
Q 006454 484 EAMASLNEKPIIFSLSN 500 (644)
Q Consensus 484 ~~Ma~~~erPIIFaLSN 500 (644)
..|. +..++.-.|.
T Consensus 222 ~~mk---~gavlIN~aR 235 (330)
T PRK12480 222 DHVK---KGAILVNAAR 235 (330)
T ss_pred hcCC---CCcEEEEcCC
Confidence 7774 4556665443
No 187
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=76.87 E-value=3.9 Score=38.78 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|||+|+|.||+..|..+.. .| .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEecc
Confidence 69999999999999999973 23 568888664
No 188
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.85 E-value=14 Score=38.75 Aligned_cols=92 Identities=16% Similarity=0.254 Sum_probs=56.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCCCCCHHHHHhcc-
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 463 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v- 463 (644)
||.|+|.|..|..+|..|... | .+++++|+.. . ..+. ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~---~~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----E---AVEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----H---HHHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 5 3577777741 1 1222 2211 11235777888765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNP 501 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 501 (644)
+||++|=+-. .+...+++++.+.. ..+..||+-+|+-
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~ 96 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNS 96 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 3766553322 23456677665543 3456788888763
No 189
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=76.71 E-value=23 Score=37.93 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=87.6
Q ss_pred cCCCceeecC---CcchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHH
Q 006454 350 GTTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAEL 402 (644)
Q Consensus 350 r~~~~~FNDD---iQGTaaVvLAgll~Alr~~------------------------g~~L~d~riv~~GAGsAG~GIA~l 402 (644)
+..+.+.|-- -..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|++
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence 3456666632 1345566777777776632 246899999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCC
Q 006454 403 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTF 478 (644)
Q Consensus 403 l~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~F 478 (644)
+... |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=. ...-+.|
T Consensus 164 ~~~f-----gm-------~V~~~d~~~~---~~-~----~--~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 164 AQAF-----GA-------KVVYYSTSGK---NK-N----E--EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLI 214 (311)
T ss_pred Hhhc-----CC-------EEEEECCCcc---cc-c----c--Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhccc
Confidence 8532 64 5888888521 10 0 0 11 12479999986 8888732 2234689
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 006454 479 TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 521 (644)
Q Consensus 479 teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w--T~Grai 521 (644)
+++.++.|. +..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 215 ~~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 215 AYKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred CHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 999999995 566666544 466665655432 456654
No 190
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.45 E-value=12 Score=40.19 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=|+..+.+++.+++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4667788888889999999999999999764 67777777753 23210 0235555543
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999987
No 191
>PRK06270 homoserine dehydrogenase; Provisional
Probab=76.36 E-value=21 Score=38.58 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=65.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccC---------C
Q 006454 385 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------P 452 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~---m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~---------~ 452 (644)
.||.++|.|..|.+++++|.+. +.++.|+. -+=+-++|++|.+.+.+.-++... ..|+.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999998753 22222331 122457899999887653122221 22332211 1
Q ss_pred CCCHHHHHhccCCcEEEEccCC---CCCCCHHH-HHHHHcCCCCcEEEe
Q 006454 453 VKELVDAVNAIKPTILIGTSGQ---GRTFTKEV-VEAMASLNEKPIIFS 497 (644)
Q Consensus 453 ~~~L~eaV~~vkPtvLIG~S~~---~g~Fteev-v~~Ma~~~erPIIFa 497 (644)
..++.|+++...+||+|=++.. ++-...++ .+++. +.++||.+
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVta 124 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTS 124 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcC
Confidence 2378999988889999987663 12223455 44454 46788873
No 192
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.16 E-value=1.3 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALE 406 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~ 406 (644)
.+..+|+|+|||-||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3446899999999999999999876
No 193
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.94 E-value=31 Score=36.24 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 372 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 372 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
+.|++..+. ..+++++|.|+|+.|...+.++. + .|. ++++.+|+
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeC
Confidence 445554443 36889999999977766554333 2 353 56887776
No 194
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.88 E-value=9.8 Score=43.48 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhccc------CCcEEEeeCCCC
Q 006454 463 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QSEC-----TAEEAYTWS------QGRAIFASGSPF 528 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts---~aEc-----t~edA~~wT------~GraifASGSPF 528 (644)
.+|+++|.+.+. .++.+-+.+-.++-+|=+-+-.-||.. ..|+ |.++++++. =|+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~--- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK--- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---
Confidence 478888874332 233333333333334446677777643 2222 334444331 133222223
Q ss_pred CCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHH
Q 006454 529 DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 573 (644)
Q Consensus 529 ~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 573 (644)
..||-.+|-.++|.+.=+..+...--++.+-+.++.
T Consensus 187 ---------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ---------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 246788999999988888777766656666666554
No 195
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=75.70 E-value=1.4 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
+...+.||||+|||.||++-|.-|.+
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.21 E-value=7.2 Score=44.07 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCccceecccCCCCcHHHHHHHHc-CCCc--eeecCCcchHHHHHHHHHHHHHHh--------CCCCCCc
Q 006454 317 FMTAVKQNYGERILIQVFEDFANHNAFDLLEKYG-TTHL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQ 385 (644)
Q Consensus 317 fv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr-~~~~--~FNDDiQGTaaVvLAgll~Alr~~--------g~~L~d~ 385 (644)
.+..+.... |++- .|=+....-.++.++|. ...| ++|++..+.+....+-++..++.. ...-.+.
T Consensus 138 ~~~~~a~~~-p~i~---~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 138 ALNQMALLN-PNIS---HTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHhC-CCce---EEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 333344444 5433 34466666778899997 3444 358888888888888888877644 1224457
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~ 405 (644)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887765
No 197
>PRK07574 formate dehydrogenase; Provisional
Probab=74.90 E-value=22 Score=39.54 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHH
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 458 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 458 (644)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+... . . +..+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~--~---~~~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---P--E---EVEQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---c--h---hhHhhc--CceecCCHHH
Confidence 3458899999999999999999998643 54 5788887532 0 0 000011 1111357999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeC
Q 006454 459 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASG 525 (644)
Q Consensus 459 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASG 525 (644)
+++. .|+++=.-- .-+.|+++++..|. +..++.=.|. .++.-|+|+. ...|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9986 898874322 23689999999995 5667776654 5555554442 23566655544
No 198
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=74.81 E-value=21 Score=38.29 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 006454 362 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 425 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~----------------g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv 425 (644)
..|--+++-+|+..|.. +..+.++++.|+|-|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34556666666665422 3468899999999999999999999753 65 46777
Q ss_pred ccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006454 426 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNP 501 (644)
Q Consensus 426 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 501 (644)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.+
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 11111 11 123579999986 888873211 12567778888884 455666544
Q ss_pred CCCCCCCHHHHh--cccCCcEEEeeCCCCCCcccCCeeecc-cCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHc
Q 006454 502 TSQSECTAEEAY--TWSQGRAIFASGSPFDPFEYGDNVFVP-GQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAG 578 (644)
Q Consensus 502 ts~aEct~edA~--~wT~GraifASGSPF~pV~~~Gk~~~p-~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~ 578 (644)
+.++--|+|+ ....|+.-.|.--=|++--.... .| =+..|+++-|=+|- .+. .+.|...+++-+-.
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~--~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~ 295 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE--SPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQ 295 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC--ChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHH
Confidence 4666666655 22456654443222321111100 11 13468888887763 221 23455555555544
Q ss_pred cc
Q 006454 579 QV 580 (644)
Q Consensus 579 ~v 580 (644)
+.
T Consensus 296 ~~ 297 (312)
T PRK15469 296 LE 297 (312)
T ss_pred HH
Confidence 44
No 199
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.76 E-value=18 Score=39.75 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 006454 362 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 421 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~--------------------g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~ 421 (644)
-||-++++-+|.++|-. |..+.++||.|+|+|+.|.-||+.|..+ | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888888743 3467889999999999999999999763 2 22
Q ss_pred EEEEccCCcccCCCcc-CCchhhhhhccccCCCCCHHHHHhccCCcEEEEccCC----CCCCCHHHHHHHH
Q 006454 422 IWLVDSKGLIVSSRLE-SLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ----GRTFTKEVVEAMA 487 (644)
Q Consensus 422 i~lvDs~GLi~~~R~~-~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~----~g~Fteevv~~Ma 487 (644)
|. +.+|.. .....+..+|. .-++.|...+ .|+++=..-- -++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 33 333321 12233445553 2456676765 8888744221 2589999999884
No 200
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.42 E-value=9.2 Score=37.39 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc--------c-cc
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA--------H-EH 450 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA--------~-~~ 450 (644)
++++.+++|.|| |..|..+++.++ + .|. +++++++.. + .++....... + +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~D~ 62 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRNE----E---AAERVAAEILAGGRAIAVAADV 62 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCCH----H---HHHHHHHHHhcCCeEEEEECCC
Confidence 467789999997 444555555543 3 353 588888852 1 1211111111 0 11
Q ss_pred CCCCCHHHHHhcc-----CCcEEEEccCC
Q 006454 451 EPVKELVDAVNAI-----KPTILIGTSGQ 474 (644)
Q Consensus 451 ~~~~~L~eaV~~v-----kPtvLIG~S~~ 474 (644)
....++..+++.+ ++|++|=.++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 63 SDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1223455555554 78999988775
No 201
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=74.33 E-value=4 Score=46.05 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=61.2
Q ss_pred ceecccCCCCcHHHHHHHHc-CCCc--eeecCCcchHHHHHHHHHHHHHHhCC--------CCCCceEEEeCcChHHHHH
Q 006454 331 IQVFEDFANHNAFDLLEKYG-TTHL--VFNDDIQGTASVVLAGLISAMKFLGG--------SLADQRFLFLGAGEAGTGI 399 (644)
Q Consensus 331 Iq~fEDf~~~nAf~lL~ryr-~~~~--~FNDDiQGTaaVvLAgll~Alr~~g~--------~L~d~riv~~GAGsAG~GI 399 (644)
|. +|=+....-.++.++|. ...| ++||+....|....+-++.++..... ...+..+||+|||.||+..
T Consensus 148 i~-~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~a 226 (517)
T PRK15317 148 IT-HTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAA 226 (517)
T ss_pred ce-EEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHH
Confidence 44 55566666778999997 3444 35777788888888899988875322 2345689999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 400 AELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 400 A~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
|..+.. .|+ ++.++|.+
T Consensus 227 A~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 227 AIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHHH-----CCC-------cEEEEecC
Confidence 988864 364 56666654
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=74.28 E-value=6.9 Score=36.09 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=49.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
||+++|+ |-.|..|++.+.+. .|+ +=.+.+|++.=-..+. ++-+.-......-.-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999998762 343 3467788876111111 1111110000000112567777776
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 497 (644)
+||+|=.|... -..+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 78887777432 234444444443 4555553
No 203
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=74.21 E-value=16 Score=38.99 Aligned_cols=100 Identities=24% Similarity=0.363 Sum_probs=63.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc----cc--CC---CC
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EH--EP---VK 454 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~----~~--~~---~~ 454 (644)
.||.|+|| |..|..+|..++. .|+ ...++++|++--+ +.+...+.++.+ .. .. ..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 37999998 9999999998765 355 2479999984211 112222222111 00 01 12
Q ss_pred CHHHHHhccCCcEEEEccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 455 ELVDAVNAIKPTILIGTSGQGR--------------TFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g--------------~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
+. +.++. .|+.|=+.+.+. .+-+++++.|.+++...+|+-.+||.
T Consensus 66 d~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 66 DL-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred CH-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 43 45765 888876655431 23567788888899999999999997
No 204
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.70 E-value=15 Score=39.33 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
.+-.-+|-.|++.=|+..|.+|+..++|++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-----------
Confidence 3445778888899999999999999999999764 68888888753 242 46666653
Q ss_pred chhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 440 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 440 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1256677776 99999999999999999987
No 205
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=73.63 E-value=1.6 Score=53.83 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCccceecccCCCCcHH------------HHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCC
Q 006454 314 LHEFMTAVKQNYGERILIQVFEDFANHNAF------------DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGS 381 (644)
Q Consensus 314 idefv~Av~~~fGp~~lIq~fEDf~~~nAf------------~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~ 381 (644)
..|.++++..+|-| |+-|.-|..-.+. ..-+||...+.+|..+. -.+
T Consensus 358 aQEViKaisgKf~P---i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~------------------Q~k 416 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP---LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTF------------------QQK 416 (1008)
T ss_pred HHHHHHHhcCCCCC---ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHH------------------HHH
Confidence 48999999999977 4215444332222 12344444443333211 146
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
|++.||+++|||..|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 417 L~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 417 LQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 7789999999999999999999875 65110 13689999987
No 206
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=73.26 E-value=4.2 Score=46.01 Aligned_cols=124 Identities=16% Similarity=0.354 Sum_probs=81.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCC-----CCCH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKEL 456 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L 456 (644)
+..||+|+||||.. -.+++...+.+...++. ..|||+|-+ .+|.+.....-+.+.++ ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999984 67888887777666753 789999974 44432111122233322 122 2578
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 006454 457 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 502 (644)
.||++. +|-.|=. .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 6555422 23444443 38899999999999999999999
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 006454 503 SQSECTAEEAYTWSQG-RAI 521 (644)
Q Consensus 503 s~aEct~edA~~wT~G-rai 521 (644)
+++|- -+++|+.+ +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555544 444
No 207
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.70 E-value=18 Score=38.85 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|..|++.=++..+.+++.+++|++|-+. .|.-+|.||.. .| -.+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 4667888888899999999999999999764 67777777753 23 246666542
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788886 99999999999999999997
No 208
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.67 E-value=18 Score=38.81 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-.|++.=++..|.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 34567788888889999999999999999976 468888887753 242 35666553
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999987
No 209
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=72.37 E-value=4.7 Score=46.55 Aligned_cols=165 Identities=18% Similarity=0.282 Sum_probs=82.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCc-cCCchhhhhhccccCCCCCHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-ESLQHFKKPWAHEHEPVKELVDAV 460 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~-~~L~~~k~~fA~~~~~~~~L~eaV 460 (644)
++.-|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+++-- .+|-.|.---++......+-+..+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 4568999999999999999999887 65 78999998543333210 122222211111111112344455
Q ss_pred hccCCcEE-----EEccCCCCCCCHHHHHHH-------Hc-CCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 006454 461 NAIKPTIL-----IGTSGQGRTFTKEVVEAM-------AS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 527 (644)
Q Consensus 461 ~~vkPtvL-----IG~S~~~g~Fteevv~~M-------a~-~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSP 527 (644)
|.+-|.+- +-.-=.|-...++-+++- .+ ..++-+||=|.--- -+---|.- +....-+.++-+--=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtl-l~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTL-LAAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHH-HHhhhcceEeeeecc
Confidence 55555432 222222223333322221 11 23677999775311 11122222 111233444433333
Q ss_pred CCCccc--CCeee----cccCCCccccchhhhHHHHHh
Q 006454 528 FDPFEY--GDNVF----VPGQANNAYIFPGLGLGLIMS 559 (644)
Q Consensus 528 F~pV~~--~Gk~~----~p~Q~NN~yiFPGiglG~l~s 559 (644)
|+...+ .|-.. .-+|.-+.-..||==||+.-+
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 766543 33221 225666666777777777543
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.25 E-value=11 Score=39.99 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=72.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccC-CCCCHHHHHhccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~eaV~~vk 464 (644)
||.|+|+|..|..+|-.++. .|+ ...++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999887764 254 367999997410000000012211 11111100 01344 45665
Q ss_pred CcEEEEccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeCCCC
Q 006454 465 PTILIGTSGQGRTF--------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 528 (644)
Q Consensus 465 PtvLIG~S~~~g~F--------------teevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifASGSPF 528 (644)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 77777554443211 136777888888899999999996 555555555541 13367776544
No 211
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=72.08 E-value=11 Score=39.59 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch-h----hhhhcc-ccCCCC
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-F----KKPWAH-EHEPVK 454 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~-~----k~~fA~-~~~~~~ 454 (644)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|++.- .. ....+ . +..+.. +..+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 34678999996 7778777777764 25 35777776521 10 00100 0 001111 112224
Q ss_pred CHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 006454 455 ELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 499 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 499 (644)
++.++++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 67788888899999988774321 1345667776554 457888654
No 212
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.93 E-value=18 Score=38.93 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-.-+|-.|++.=|+..|.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3466788888889999999999999999975 568888888753 24 246666543
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788886 99999999999999999986
No 213
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=71.78 E-value=19 Score=44.92 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc------------Ce---EEE--EccCCccc-CCCccCCchhhh
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR------------KK---IWL--VDSKGLIV-SSRLESLQHFKK 444 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr------------~~---i~l--vDs~GLi~-~~R~~~L~~~k~ 444 (644)
.--+|||.|+|..|.|-++++...-.+ -++.++-+ ++ +|- +.+.-.+. ++... --+.+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSK-QFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcc-ccchhh
Confidence 358999999999999999988653111 02222210 11 221 11111111 11000 001122
Q ss_pred hhccccCCCCCHH-HHHhccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 006454 445 PWAHEHEPVKELV-DAVNAIKPTILIGTS----GQGRTFTKE-VVEAMAS 488 (644)
Q Consensus 445 ~fA~~~~~~~~L~-eaV~~vkPtvLIG~S----~~~g~Ftee-vv~~Ma~ 488 (644)
.|+|+..=...+. +++.. .|+|||+= ..|.++|++ +++.|..
T Consensus 279 y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred hccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 3444322224454 67776 99999984 234578999 8888864
No 214
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.54 E-value=17 Score=39.04 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 440 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~ 440 (644)
+-.-+|-.|++.=|+..|.+++.+++|++|-+. .|.-+|.||.. .|... ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345678888888899999999999999999764 67778777753 22111 1235555442
Q ss_pred hhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 441 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 441 ~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 215
>PRK06487 glycerate dehydrogenase; Provisional
Probab=71.53 E-value=85 Score=33.72 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=108.8
Q ss_pred CCCceeecC---CcchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 006454 351 TTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 403 (644)
Q Consensus 351 ~~~~~FNDD---iQGTaaVvLAgll~Alr~~------------------------g~~L~d~riv~~GAGsAG~GIA~ll 403 (644)
..+.+.|-- -+.+|=-+++-+|+..|-. +..|.++++.|+|.|..|..||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 456666632 2355666777777766532 2358899999999999999999998
Q ss_pred HHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 006454 404 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 479 (644)
Q Consensus 404 ~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Ft 479 (644)
... |+ +|+.+|+.+ ..+ . + ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~-----~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R-----P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c-----c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 532 64 477777642 100 0 0 12379999986 8988732 23347999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh--cccCCcEEEeeCCCCC--CcccCCeeecccCCCccccchhhhHH
Q 006454 480 KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGSPFD--PFEYGDNVFVPGQANNAYIFPGLGLG 555 (644)
Q Consensus 480 eevv~~Ma~~~erPIIFaLSNPts~aEct~edA~--~wT~GraifASGSPF~--pV~~~Gk~~~p~Q~NN~yiFPGiglG 555 (644)
++.+..|. +..++.=.|. .++--|+|+ ...+|+.-.|.=-=|+ |..-+..... -+..|+.+-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~-~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLA-PDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhh-cCCCCEEECCccccC
Confidence 99999995 5566665544 555555544 2235665444221121 1111111110 035689999988732
Q ss_pred HHHhCCcccCHHHHHHHHHHHHcccC
Q 006454 556 LIMSGAIRVHDDMLLAAAEALAGQVT 581 (644)
Q Consensus 556 ~l~s~a~~Itd~M~laAA~aLA~~v~ 581 (644)
. ..-.+.|...+++.|.....
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHHc
Confidence 2 22234455555555555543
No 216
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.45 E-value=20 Score=37.66 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC-
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK- 464 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk- 464 (644)
||-|+|.|..|..+|..+... |. +++++|++ .++ .+..+.. ......++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~----~~~---~~~~~~~---g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN----QEA---VDVAGKL---GITARHSLEELVSKLEA 59 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC----HHH---HHHHHHC---CCeecCCHHHHHHhCCC
Confidence 689999999999999988652 53 57777763 111 2222110 1122357778877643
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 502 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 502 (644)
+|++|=+ -......+++++.+.. ..+..+|.=+|+-.
T Consensus 60 advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 60 PRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 2232356677666553 34567888887633
No 217
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=71.43 E-value=16 Score=40.47 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=|+..+.+++.+++|++|-+. .|.-+|.||.. .| -.+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC--------------
Confidence 3566777888889999999999999999754 67777777754 24 236666543
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788886 99999999999999999997
No 218
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.41 E-value=32 Score=39.40 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=28.7
Q ss_pred cccCCCccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 006454 539 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 574 (644)
Q Consensus 539 ~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 574 (644)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999988888888777677777776654
No 219
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=71.40 E-value=8 Score=34.72 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=50.3
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEE
Q 006454 391 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 470 (644)
Q Consensus 391 GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG 470 (644)
|.|..|.+++++|...-.. .+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 1346778887444432 1112122233478999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 471 TSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 471 ~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 3344444455554 3455554
No 220
>PRK06932 glycerate dehydrogenase; Provisional
Probab=71.22 E-value=32 Score=36.89 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=82.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 459 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ea 459 (644)
..|.++++.|+|-|..|..+|+++... |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 458899999999999999999988532 64 4666665310 000 0 112479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCC--Cc
Q 006454 460 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--PF 531 (644)
Q Consensus 460 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASGSPF~--pV 531 (644)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8988832 2334799999999995 5666665554 5555555442 235665444322221 11
Q ss_pred ccCCeeec-ccCCCccccchhhhH
Q 006454 532 EYGDNVFV-PGQANNAYIFPGLGL 554 (644)
Q Consensus 532 ~~~Gk~~~-p~Q~NN~yiFPGigl 554 (644)
.-+.--.. --+..|+.+-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11110000 013568888887763
No 221
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.14 E-value=20 Score=38.79 Aligned_cols=87 Identities=11% Similarity=0.226 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=|+..+.+++.++++++|.+. -|.-+|.||... +.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 4567888888899999999999999999764 677888777531 110 01235555543
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
No 222
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=70.84 E-value=9.2 Score=40.84 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=53.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc---ccCCCCCHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAV 460 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~eaV 460 (644)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. .. +.+.+...+.+ +.....+++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36999999999888877776654 244 789988874 22 23334434433 112246899999
Q ss_pred hccCCcEEEEccCCCC---CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHH
Q 006454 461 NAIKPTILIGTSGQGR---TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAE 510 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g---~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~e 510 (644)
+. .||++-++.... .|+.+.++ +.-.|-++.--+ .+.|+.++
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~ 236 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDE 236 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHH
Confidence 97 999998755443 56666665 344555655322 23466654
No 223
>PLN03139 formate dehydrogenase; Provisional
Probab=70.75 E-value=36 Score=37.96 Aligned_cols=142 Identities=17% Similarity=0.113 Sum_probs=83.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHH
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 458 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 458 (644)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... ..+ ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DPE---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----chh---hHhhcCc---eecCCHHH
Confidence 4568999999999999999999999642 64 4777887532 001 1110001 12247999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCCCCcc
Q 006454 459 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFE 532 (644)
Q Consensus 459 aV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~-~w-T~GraifASGSPF~pV~ 532 (644)
+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|. .++.-|+|+ +. ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888773321 12689999999995 4556665543 455555444 22 35666656554332211
Q ss_pred c-CCeeecccCCCccccchhhh
Q 006454 533 Y-GDNVFVPGQANNAYIFPGLG 553 (644)
Q Consensus 533 ~-~Gk~~~p~Q~NN~yiFPGig 553 (644)
. ... .--+..|..+-|=++
T Consensus 323 lp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCC--hhhcCCCeEEccccc
Confidence 1 000 001235788888776
No 224
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.64 E-value=8.6 Score=32.23 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 432 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 432 (644)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 789999999999999988542 4 6899999987666
No 225
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.49 E-value=75 Score=33.60 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=23.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
..++++++|+|..|+..+.++... .|- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998776665555432 131 46887776
No 226
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=70.41 E-value=1.5e+02 Score=34.93 Aligned_cols=261 Identities=20% Similarity=0.303 Sum_probs=133.2
Q ss_pred CCceeeeeecCCCCccccccCcccccccccCCchhhhHHHHHHHH---------HHHHHhcCCCccceecccCCCCcHHH
Q 006454 274 PSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFM---------TAVKQNYGERILIQVFEDFANHNAFD 344 (644)
Q Consensus 274 P~~~LPI~LDvGTnNe~LL~DplYlG~r~~R~~g~eY~~fidefv---------~Av~~~fGp~~lIq~fEDf~~~nAf~ 344 (644)
|...+|...+.-..=+++.+||-+. +||+.++.+++ ..+.+.+|.+..+- .||+....+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK-~E~lnptGS~K 302 (610)
T PRK13803 233 PETLMANLQELQESYTKIIKSNEFQ---------KTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLK-REDLNHTGSHK 302 (610)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhCCCCCcceeHHHHHHhhCCEEEEE-eCCCCCcccHH
Confidence 3344555555554556677777543 55666655552 33445567888888 88888878876
Q ss_pred HHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEE-eCcChHHHHHHHHHHHHHHHhcCCCh------hh
Q 006454 345 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF-LGAGEAGTGIAELIALEISKQTNMPL------EE 417 (644)
Q Consensus 345 lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~-~GAGsAG~GIA~ll~~~m~~~~Gls~------ee 417 (644)
+ | + ++.-++.|.+ .| ..+++. .|+|..|+++|-..... |+.- ..
T Consensus 303 ~--r-------------~----al~~~~~a~~-~g----~~~vi~e~gsGnhG~A~A~~aa~~-----Gl~~~I~m~~~~ 353 (610)
T PRK13803 303 I--N-------------N----ALGQALLAKR-MG----KTRIIAETGAGQHGVATATACALF-----GLKCTIFMGEED 353 (610)
T ss_pred H--H-------------H----HHHHHHHHHH-cC----CCEEEEecChHHHHHHHHHHHHHc-----CCcEEEEEeCCc
Confidence 4 1 1 1222222322 23 224554 78999888887766543 5421 11
Q ss_pred hc-C------------eEEEEccCCcccCCCccCCchhhhhh---------cccc----CCC--------C-CHHHHHhc
Q 006454 418 TR-K------------KIWLVDSKGLIVSSRLESLQHFKKPW---------AHEH----EPV--------K-ELVDAVNA 462 (644)
Q Consensus 418 Ar-~------------~i~lvDs~GLi~~~R~~~L~~~k~~f---------A~~~----~~~--------~-~L~eaV~~ 462 (644)
.. . +++.|++..--.+ +......+.| .... .+. + .-.|+.++
T Consensus 354 ~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~---~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q 430 (610)
T PRK13803 354 IKRQALNVERMKLLGANVIPVLSGSKTLK---DAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQ 430 (610)
T ss_pred ccchhhHHHHHHHCCCEEEEECCCCCCHH---HHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHH
Confidence 00 1 3666654210000 0011111112 1000 111 1 12366666
Q ss_pred c------CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCe
Q 006454 463 I------KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDN 536 (644)
Q Consensus 463 v------kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk 536 (644)
+ .||.++.+.|.||...- +...... .+.|-|++.- |....-++++-+-.++.|+.-+..|+ +
T Consensus 431 ~~~~~g~~pD~vV~~vGgGg~~~G-i~~~f~~-~~~v~iigVE-~~g~~~~~~~~~a~l~~g~~g~~~g~---------~ 498 (610)
T PRK13803 431 LKEQTGKLPDAIIACVGGGSNAIG-IFYHFLD-DPSVKLIGVE-AGGKGVNTGEHAATIKKGRKGVLHGS---------M 498 (610)
T ss_pred HHHhhCCCCCEEEEEeCcCHhHHH-HHHHHhh-CCCceEEEEe-cCCCCcccccccchhhcCCeeeeccc---------e
Confidence 5 59999999887764332 1222211 3444444432 23333345555656666665554553 1
Q ss_pred ee----cccCCCcccc------chhhhHHHHHh------CCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCC
Q 006454 537 VF----VPGQANNAYI------FPGLGLGLIMS------GAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 596 (644)
Q Consensus 537 ~~----~p~Q~NN~yi------FPGiglG~l~s------~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 596 (644)
++ .-||.-+.+. +||+|-..+.. ....|||+-.++|.+.||.. .-|+|.++.
T Consensus 499 ~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~--------eGi~~~~ss 566 (610)
T PRK13803 499 TYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKL--------EGIIPALES 566 (610)
T ss_pred eeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH--------cCCccCcHH
Confidence 22 1233333332 58887654422 24579999999999999853 236676664
No 227
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=70.27 E-value=4.2 Score=43.40 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++|++-+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 457889999999999999999999875 76 889999997
No 228
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=69.97 E-value=5.8 Score=42.97 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 799999986
No 229
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.95 E-value=6 Score=40.94 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999997
No 230
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=69.88 E-value=72 Score=36.71 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHH
Q 006454 351 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 409 (644)
Q Consensus 351 ~~~~~FNDDi---QGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~ 409 (644)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 23555667777777653 24568899999999999999999998643
Q ss_pred hcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHH
Q 006454 410 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEA 485 (644)
Q Consensus 410 ~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~ 485 (644)
|+ +++.+|+.. .+ + .. ..+ .-...+|.|+++. .|+++=.-. .-+.|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~---~~-~~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-E---RA-AQL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-h---HH-Hhc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 588888742 11 1 00 001 0111268898886 788764322 236889999998
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccC
Q 006454 486 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 565 (644)
Q Consensus 486 Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 565 (644)
|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++--.....+ =+..|+.+-|=+|-...-+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~pL--~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSPL--FELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCchh--hcCCCeeEcCccccchHHH-----H
Confidence 85 566777666543323333333333 5665433211111000001111 1345899999887433322 3
Q ss_pred HHHHHHHHHHHHcccCcc
Q 006454 566 DDMLLAAAEALAGQVTQE 583 (644)
Q Consensus 566 d~M~laAA~aLA~~v~~e 583 (644)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455556666666665443
No 231
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=69.75 E-value=9.1 Score=40.35 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=57.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc-----hhhhhhccc-cCCCCCHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHE-HEPVKELVD 458 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~-----~~k~~fA~~-~~~~~~L~e 458 (644)
.||.|+|+|..|..+|..+... | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 5 368888874211000000000 000000000 0001233 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCC
Q 006454 459 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQS 505 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~a 505 (644)
+++ ++|++|=+.... ..+++++.+... .+..+|..+.|.....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 444 478777443322 358888888764 4556788888876433
No 232
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.62 E-value=9.2 Score=43.46 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=63.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cCCCCCHHHHHh
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~eaV~ 461 (644)
.+|-|+|.|.-|.++|..|... |. +++++|+. .++ .+++...-.+. .....++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999999753 53 58888873 222 22222111000 113468999998
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 006454 462 AI-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNP 501 (644)
Q Consensus 462 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 501 (644)
.. +|+++| +.-.++...++|++.+.. ..+..||.=+||=
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 65 688555 333345668888887764 4567888889884
No 233
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=69.60 E-value=19 Score=38.73 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 006454 361 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 439 (644)
Q Consensus 361 QGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L 439 (644)
.+--.+|-+|++.-++..+.+|.+.++|++|.+. .|--+|.+|... + -.+.+|+|+
T Consensus 133 ~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~----------- 189 (283)
T COG0190 133 PGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR----------- 189 (283)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC-----------
Confidence 3455778899999999999999999999999876 577777777652 3 346666663
Q ss_pred chhhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 440 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 440 ~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-.-|.++.|+.++|+
T Consensus 190 -------------T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk 219 (283)
T COG0190 190 -------------TKDLASITKN--ADIVVVAVGKPHFIKADMVK 219 (283)
T ss_pred -------------CCCHHHHhhh--CCEEEEecCCcccccccccc
Confidence 1357778886 99999999999999988886
No 234
>PLN02602 lactate dehydrogenase
Probab=69.21 E-value=16 Score=40.10 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=76.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCC---CCHHHHHh
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 461 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~eaV~ 461 (644)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999988764 365 3679999973111111111233322 22211 111 34544 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEee
Q 006454 462 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 524 (644)
Q Consensus 462 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~--GraifAS 524 (644)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89888665553 3 233 7788888999999999999997 344445555552 1346677
Q ss_pred CC
Q 006454 525 GS 526 (644)
Q Consensus 525 GS 526 (644)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 64
No 235
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.00 E-value=11 Score=40.49 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~ 405 (644)
..||.|+|||+-|+.+|..+.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998874
No 236
>PRK06153 hypothetical protein; Provisional
Probab=68.85 E-value=4.3 Score=45.27 Aligned_cols=161 Identities=20% Similarity=0.313 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCccceecccCCCCcHHHHHHHHcCCCceee--cCCcchHHHHHHHHHHHHHHhCCCCCC
Q 006454 307 GQEYAELLHEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLAD 384 (644)
Q Consensus 307 g~eY~~fidefv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaVvLAgll~Alr~~g~~L~d 384 (644)
+..|-++.++++.-+.---||-..|. .+ .++.-|+.... +++=.+|| |-.=..+. +.+ .-.+|++
T Consensus 110 ~~~y~~y~~k~~~Y~~ii~~~A~~~~-~~--~~~~~~~~~~~-~~~~svf~y~dt~s~R~~--i~~-------~q~kL~~ 176 (393)
T PRK06153 110 GGGYADYYHKMTTYATIISGPARVLD-PT--ASARTFRVIED-AEEDSVFNYPDTASSRAG--IGA-------LSAKLEG 176 (393)
T ss_pred CCCcccHHHHHHHHHHHhcchhhhcC-CC--CCCcccCCCCC-cccCCceehhhhhccccC--hHH-------HHHHHhh
Confidence 35677777887777766666644444 11 22333432211 11223333 11111111 111 1256789
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-----CCCCCHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-----EPVKELVDA 459 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-----~~~~~L~ea 459 (644)
.||+|+|+|..|.-|+++|+.. |+ ++|.|+|.+ .|..+ +|+..---|-.+. ....-+.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVevaa~r 241 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVDYFKSR 241 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHHHHHHH
Confidence 9999999999999999999874 76 789999997 22222 2433211111111 111246666
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 006454 460 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPT 502 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt 502 (644)
++...|.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 242 l~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 242 YSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 77777754 3334457888777653 455666 344444
No 237
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.48 E-value=24 Score=38.10 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|..|++.=++..|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567888888889999999999999999764 68888888753 243 35566442
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 238
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=68.48 E-value=31 Score=36.20 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888643 53 1468888874
No 239
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=68.37 E-value=15 Score=41.79 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=61.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc--cCCCCCHHHHHhcc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 463 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~eaV~~v 463 (644)
.|-|+|.|..|..+|..|+.. |. ++++.|+. .+ ..+..++.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999999653 53 57877763 21 122332221111 12335788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 006454 464 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 500 (644)
Q Consensus 464 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 500 (644)
+|+++| ++-.++...++|++.+..+ .+.-||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588665 3444556778888887654 56789999988
No 240
>PRK13938 phosphoheptose isomerase; Provisional
Probab=68.26 E-value=16 Score=36.75 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~ee-Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
++.||.++|.|..| -+|..+...|.. ++..+- +-..+-++......+.- .. -..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 57899999999987 577777766542 111100 01112222221111100 00 01122233321 22122
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 006454 462 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNP 501 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNP 501 (644)
-+-|++|++|..|. |+++++.+. +...-|+|.=-+||
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 25789999999886 999999874 33444554433333
No 241
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=68.12 E-value=36 Score=36.58 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc---CCCCCHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 459 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 459 (644)
.-.++.|+|+|.-|-..++.+... .. -++|+++|+. .++ .+.+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655554331 12 3789988883 222 333333332211 224689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 006454 460 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 511 (644)
Q Consensus 460 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ed 511 (644)
++. .||+|-++ +....|..+.++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 985 89998654 223467777664 556788887544 368999864
No 242
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=67.71 E-value=1.5e+02 Score=34.14 Aligned_cols=195 Identities=21% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCCceeecC---CcchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHH
Q 006454 351 TTHLVFNDD---IQGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 409 (644)
Q Consensus 351 ~~~~~FNDD---iQGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~ 409 (644)
..+++.|-- -+.+|=-+++.+|+..|. .|..|.++++.|+|-|..|..+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 456666632 124555567777766552 24568999999999999999999998642
Q ss_pred hcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc-c---CCCCCCCHHHHHH
Q 006454 410 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT-S---GQGRTFTKEVVEA 485 (644)
Q Consensus 410 ~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~-S---~~~g~Fteevv~~ 485 (644)
|+ +++.+|+.. .. + ... .+ ......+|.|+++. .|+++=. . ..-+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~----~~-~---~~~-~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI----SP-E---RAE-QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC----Ch-h---HHH-hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 54 588888741 11 1 000 01 00112478898876 7877622 1 2246888888888
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccC
Q 006454 486 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 565 (644)
Q Consensus 486 Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~It 565 (644)
|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++=-.... .-=+..|+.+-|=+|-....+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 556777666543323333333433 56654442111110000011 112446888888877433322 2
Q ss_pred HHHHHHHHHHHHcccCc
Q 006454 566 DDMLLAAAEALAGQVTQ 582 (644)
Q Consensus 566 d~M~laAA~aLA~~v~~ 582 (644)
..|...+++.+-+....
T Consensus 287 ~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 287 ENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34445555555555443
No 243
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=67.54 E-value=7.7 Score=41.98 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567899999999999999998753 42 2367787764
No 244
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=67.46 E-value=6.3 Score=37.61 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 388 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 388 v~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 365 348889987
No 245
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.17 E-value=7 Score=41.88 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 799999987
No 246
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=67.10 E-value=12 Score=42.94 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=27.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..+++.+++|+|||.+|-+||..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446888999999999777776666653 35 2 68888873
No 247
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.08 E-value=44 Score=34.81 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998753 5 468888864
No 248
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=67.05 E-value=8 Score=39.62 Aligned_cols=57 Identities=30% Similarity=0.374 Sum_probs=42.7
Q ss_pred HHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 006454 345 LLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 424 (644)
Q Consensus 345 lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~l 424 (644)
-++||..++....-.. .- -++|++-|++++|+|.-|.-++..++.+ |+ +++++
T Consensus 7 ~~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i 59 (254)
T COG0476 7 EIERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTI 59 (254)
T ss_pred HHHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEE
Confidence 3567766666654432 11 3578889999999999999999999875 65 66999
Q ss_pred EccC
Q 006454 425 VDSK 428 (644)
Q Consensus 425 vDs~ 428 (644)
+|.+
T Consensus 60 ~D~d 63 (254)
T COG0476 60 VDFD 63 (254)
T ss_pred EcCC
Confidence 9986
No 249
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=67.05 E-value=23 Score=39.09 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 006454 364 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 442 (644)
Q Consensus 364 aaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 442 (644)
.-+|-.|++.=|+..|.+++.+++|++|-+. .|.-+|-||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 4667788888889999999999999999754 67777777753 242 35566553 1
Q ss_pred hhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 006454 443 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 484 (644)
Q Consensus 443 k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~ 484 (644)
++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999997
No 250
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=66.76 E-value=7.8 Score=39.41 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
-+|+|+|||.||+..|-.|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 4799999999999999888753 65 4778887644
No 251
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=66.69 E-value=8.5 Score=37.80 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=51.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh----hc---ccc--------
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----WA---HEH-------- 450 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~----fA---~~~-------- 450 (644)
||.|+|||..|.|||-+++.+ | -++.++|.+-- .++..++. +. +.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~-------~l~~~~~~i~~~l~~~~~~~~~~~~~~~ 61 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPE-------ALERARKRIERLLDRLVRKGRLSQEEAD 61 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHH-------HHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChH-------HHHhhhhHHHHHHhhhhhhccchhhhhh
Confidence 688999999999999999864 5 46889998522 12111111 11 100
Q ss_pred ------CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006454 451 ------EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 451 ------~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 497 (644)
.-..+|.+++ ..|..|=+-.-.--..+++.+.+.+.+..=.||+
T Consensus 62 ~~~~~i~~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 62 AALARISFTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp HHHHTEEEESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred hhhhhcccccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 0113566655 3677776544333457788888887775555553
No 252
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.59 E-value=26 Score=35.32 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=41.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
||++.|| |-.|-.+++.+.+ .| .+++.+++. ..+ +. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6889996 9888888887764 24 357777763 111 21 1245778888889
Q ss_pred CcEEEEccCCC
Q 006454 465 PTILIGTSGQG 475 (644)
Q Consensus 465 PtvLIG~S~~~ 475 (644)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 253
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=66.45 E-value=52 Score=35.52 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=93.8
Q ss_pred CCCceeecCC---cchHHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcChHHHHHHHHHHHH
Q 006454 351 TTHLVFNDDI---QGTASVVLAGLISAMKF---------------------LGGSLADQRFLFLGAGEAGTGIAELIALE 406 (644)
Q Consensus 351 ~~~~~FNDDi---QGTaaVvLAgll~Alr~---------------------~g~~L~d~riv~~GAGsAG~GIA~ll~~~ 406 (644)
..+++.|--- ..+|=-+++.+|+..|- .|..|.++++.|+|.|..|..||+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 4555555321 23555567777776653 24568999999999999999999987523
Q ss_pred HHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCCHHH
Q 006454 407 ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFTKEV 482 (644)
Q Consensus 407 m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~----S~~~g~Fteev 482 (644)
+ |+ ++...|+.. . + .....+ .....+|.|+++. .|+++=. ...-+.|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 54 355566521 0 0 000011 1112479999886 8887632 12236899999
Q ss_pred HHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEeeCCCCC--CcccCCeeecccCCCccccchhhhH
Q 006454 483 VEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAIFASGSPFD--PFEYGDNVFVPGQANNAYIFPGLGL 554 (644)
Q Consensus 483 v~~Ma~~~erPIIFaLSNPts~aEct~edA~~-w-T~GraifASGSPF~--pV~~~Gk~~~p~Q~NN~yiFPGigl 554 (644)
++.|. +.-++.=.| +.++--|+|+- + .+|+.-.|.=-=|+ |..-+. . -=...|+.+-|=+|-
T Consensus 223 l~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 223 FAKMK---SSAIFINAG----RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred HhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCc-h--hhcCCCEEEcCcCCC
Confidence 99995 455666444 45555555442 2 45665433211111 110010 0 012358888887763
No 254
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.87 E-value=16 Score=38.62 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||.|+|||+.|+.+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998753 4 456777764
No 255
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.84 E-value=29 Score=34.07 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+++++++|.|+ |..|..+|+.+++ .| -+++++|+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46689999996 6666666666643 25 368888774
No 256
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=65.56 E-value=4.7 Score=35.59 Aligned_cols=90 Identities=12% Similarity=0.198 Sum_probs=52.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 465 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkP 465 (644)
||.|+|+|..|......+... ..+. +=..++|.+ .+....+.+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~-------~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPD-------PERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSS-------HHHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCC-------HHHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 799999999987765555432 0111 234566663 1112223333322 245789999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 466 TILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 466 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9887 55544 456666666554333 5554
No 257
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=65.50 E-value=15 Score=40.85 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCceEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 383 ADQRFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 383 ~d~riv~~GAGsAG~G-IA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
+.+||+|+|.|-.|++ +|++|.. .|. ++...|.+-. ...+.|......+.. . .+ .+.++
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~-----~G~-------~V~~~D~~~~---~~~~~l~~~gi~~~~---~-~~-~~~~~ 65 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN-----LGY-------KVSGSDLKES---AVTQRLLELGAIIFI---G-HD-AENIK 65 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh-----CCC-------eEEEECCCCC---hHHHHHHHCCCEEeC---C-CC-HHHCC
Confidence 4468999999999999 7988865 363 5788887411 010112111111110 1 11 13343
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCC
Q 006454 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGS 526 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT-~GraifASGS 526 (644)
++|.+|=..+.+ .-.+++.++-. ..-||+ +.+|. ++.+. +.+.|-.|||
T Consensus 66 --~~d~vv~spgi~-~~~~~~~~a~~--~~i~i~-------~~~e~----~~~~~~~~~~I~ITGT 115 (461)
T PRK00421 66 --DADVVVYSSAIP-DDNPELVAARE--LGIPVV-------RRAEM----LAELMRFRTSIAVAGT 115 (461)
T ss_pred --CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHHHccCcEEEEECC
Confidence 488888666666 34666666543 345664 23333 22332 2367778887
No 258
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=65.23 E-value=14 Score=39.40 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=73.6
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEE
Q 006454 389 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 468 (644)
Q Consensus 389 ~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvL 468 (644)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+-.-.+.+...-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 36899999842111111112333221121110001122466776 8999
Q ss_pred EEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCC
Q 006454 469 IGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 527 (644)
Q Consensus 469 IG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~G--raifASGSP 527 (644)
|=+.+.+.. .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccch
Confidence 877666421 11467788888999999999999983 555555555421 236776643
No 259
>PRK00536 speE spermidine synthase; Provisional
Probab=64.93 E-value=11 Score=39.94 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=60.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCC-CCHHHHHhcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KELVDAVNAI 463 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~eaV~~v 463 (644)
.||||+|+|-.| +|+-++.. . +++.|||-++-|++--++.++..+..|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999985 56666543 1 3899999999877543334665555443211111 1122211 12
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPF 528 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF 528 (644)
+=||+|-=| .|+++-.+.+. .+++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 578888655 36776665543 2333 3677777788887
No 260
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=64.88 E-value=13 Score=40.39 Aligned_cols=108 Identities=20% Similarity=0.365 Sum_probs=67.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhhhhhc-ccc--CCCCCHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWA-HEH--EPVKELVDAV 460 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA-~~~--~~~~~L~eaV 460 (644)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-...| |.+-. .+. ++. ...++ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999988888843 3542 479999987 222111112 33222 111 110 00023 3556
Q ss_pred hccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 006454 461 NAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 515 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~w 515 (644)
+. .|+.|=+.+.+ | ..-+++.+++++++...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 65 78777444443 4 13457888999999999999999999 77666
No 261
>PLN02527 aspartate carbamoyltransferase
Probab=64.73 E-value=2.1e+02 Score=30.92 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=81.6
Q ss_pred HHHhcCCCccceecccCCCCcHHHHHHHHcCCCceee--cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHH
Q 006454 321 VKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTG 398 (644)
Q Consensus 321 v~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~G 398 (644)
+-.+| .++++ .-.+...... -+.+| .++||.| |+...-=.=+||=++.-.+..| ++++.||+++|.+.=+ -
T Consensus 92 vls~y-~D~iv--iR~~~~~~~~-~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-r 164 (306)
T PLN02527 92 TVEGY-SDIIV--LRHFESGAAR-RAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-R 164 (306)
T ss_pred HHHHh-CcEEE--EECCChhHHH-HHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-h
Confidence 34567 55554 3556555443 34454 4789999 4455566677888887777666 5999999999987422 2
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-C---CCCCHHHHHhccCCcEEEEccCC
Q 006454 399 IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAVNAIKPTILIGTSGQ 474 (644)
Q Consensus 399 IA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV~~vkPtvLIG~S~~ 474 (644)
+++-++.++.+..|+ +|+++-.+|+- +++....++++. . ...++.|+++. .||+.-.+.+
T Consensus 165 v~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 165 TVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred hHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 455555544332253 58888887762 122222333321 1 12689999997 9999987654
No 262
>PRK07340 ornithine cyclodeaminase; Validated
Probab=64.63 E-value=40 Score=35.94 Aligned_cols=103 Identities=10% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCC--CCCHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 459 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~ea 459 (644)
....+++++|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.+...+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888884 222 22333333211111 3578899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHH
Q 006454 460 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAE 510 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~e 510 (644)
+++ .|++|-++... .+|..+ + -+.--|-++.-.+ .+.|+.+|
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~------~~g~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-A------RAGRLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-C------CCCCEEEecCCCCCCcccCCHH
Confidence 975 99999776543 234332 2 1333455554321 35666655
No 263
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=64.40 E-value=47 Score=42.36 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCccceecccCCCC-------cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceE
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANH-------NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 387 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~-------nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~ri 387 (644)
-+.+++.-+.++.+.+|| |++.. +-+++..+|.-.+++.+=|-+|.+-- .+.|
T Consensus 441 ~~ViEaaLk~~~G~~IIN---SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~r- 500 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN---SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RERK- 500 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE---eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHHH-
Confidence 567888888888899999 88874 26788999999999998887776533 1222
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC---
Q 006454 388 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK--- 464 (644)
Q Consensus 388 v~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk--- 464 (644)
+-||+.+...+.++.|++. ++|+ +|.- +..-- ....+| ..+|.+ ..|+|+.+|
T Consensus 501 ---------~~ia~r~~~~~~~~~Gi~~----~dIi-~Dpl--v~~v~-t~~ee~-~~~~~~------~leair~ik~~~ 556 (1229)
T PRK09490 501 ---------IEICKRAYDILTEEVGFPP----EDII-FDPN--IFAVA-TGIEEH-NNYAVD------FIEATRWIKQNL 556 (1229)
T ss_pred ---------HHHHHHHHHHHHHHcCCCH----HHEE-EcCC--cceee-cChHHH-HHHHHH------HHHHHHHHHHHC
Confidence 3688888887765579975 4555 7873 22111 112222 244432 346666333
Q ss_pred --CcEEEEccCCCCCC
Q 006454 465 --PTILIGTSGQGRTF 478 (644)
Q Consensus 465 --PtvLIG~S~~~g~F 478 (644)
..+.+|+|...=-|
T Consensus 557 P~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 557 PHAKISGGVSNVSFSF 572 (1229)
T ss_pred CCCcEEEeeccccccC
Confidence 35899999987445
No 264
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=64.38 E-value=32 Score=36.49 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.1
Q ss_pred hCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhh----------hhh
Q 006454 378 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----------KPW 446 (644)
Q Consensus 378 ~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k----------~~f 446 (644)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. ..+....+.... ..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445567789999997 99998888888752 4 257777763 111111111110 011
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 006454 447 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 447 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 499 (644)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122356677774 9999988876432 2457888888776678998754
No 265
>PRK07877 hypothetical protein; Provisional
Probab=64.17 E-value=18 Score=43.42 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch----------hhhhhccc
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH----------FKKPWAHE 449 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~----------~k~~fA~~ 449 (644)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+ ..+ +|+. .|..-|++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 898999888764 63 268999998733 221 2433 12111110
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 450 -----HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 450 -----~~~---------~--~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
.+. + .++.+.++. .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 0 245555654 6777766652 23666777777777888888775
No 266
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=63.98 E-value=50 Score=34.49 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=53.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 463 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~G-ls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 463 (644)
+||.|+|+|..|..+|..+... | ++ ..+++++|++. .+.+......+. ......+..|+++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~------~~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK------NEHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc------HHHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 24678777631 011111111120 00112456666664
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 502 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 502 (644)
+|++| ++..+ ...+++++.++.+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 67766 44433 3456677766532 2334555566654
No 267
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.96 E-value=12 Score=41.04 Aligned_cols=95 Identities=23% Similarity=0.392 Sum_probs=53.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--ccCCCccCCchhhhhhccc------cCCCCCH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE------HEPVKEL 456 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~------~~~~~~L 456 (644)
.+|.++|||+=|+.+|..+.+. |- .=++|..|.+=. |-.+|. ..+|-.. -.-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999863 41 235777664310 111121 1112211 1113578
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecC
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLS 499 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLS 499 (644)
.++++. --.++++++++ +..++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888875 13345566654 47777777752 23444444443
No 268
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=63.87 E-value=49 Score=36.08 Aligned_cols=131 Identities=16% Similarity=0.245 Sum_probs=83.9
Q ss_pred HHhcCCCccceecccCCCCcHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 006454 322 KQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 400 (644)
Q Consensus 322 ~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA 400 (644)
-.+| .++++- -.+... +.+.+.+| .++||.|- |-.--=.=+|+=++.-.+..|+++++.||.++|-+.- +++
T Consensus 98 ls~y-~D~iv~--R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~v~ 170 (334)
T PRK01713 98 LGRM-YDAIEY--RGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--NMG 170 (334)
T ss_pred HHHh-CCEEEE--EcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--CHH
Confidence 3457 556543 455433 34444555 46899993 3334456678888887777787899999999998753 478
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc----CCCCCHHHHHhccCCcEEEEcc
Q 006454 401 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTS 472 (644)
Q Consensus 401 ~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~----~~~~~L~eaV~~vkPtvLIG~S 472 (644)
+-++.++.+ .|+ +|.++-.+++.-.+ .+-+.-+.+++.. ....++.|+++. .||+.-.+
T Consensus 171 ~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt~~ 233 (334)
T PRK01713 171 NSLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHTDV 233 (334)
T ss_pred HHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcc
Confidence 877676665 475 58888888773321 1111223344321 123689999997 99998653
No 269
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=63.85 E-value=29 Score=37.11 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCC--CcEEEecCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPT 502 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt 502 (644)
+-|++||+|..|. |+++++++....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999887 8999998864333 35544334555
No 270
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=63.28 E-value=9.9 Score=41.10 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|+|.-|+-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 76 889999987
No 271
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=62.40 E-value=25 Score=37.53 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCCCHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 458 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 458 (644)
.-+++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +.+.+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666653 233 778888873 22 234444444432 122468999
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHH
Q 006454 459 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEE 511 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLS-NPts~aEct~ed 511 (644)
+++. .||++-+.+.. ..|..+.++. .--|-++- +--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHH
Confidence 9986 99999764432 3677776652 23455542 222468888764
No 272
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=62.40 E-value=2.1e+02 Score=32.02 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=116.5
Q ss_pred HHHHHHHcCCCceeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHH
Q 006454 343 FDLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAE 401 (644)
Q Consensus 343 f~lL~ryr~~~~~FNDDi---QGTaaVvLAgll~Alr~------------------~g~~L~d~riv~~GAGsAG~GIA~ 401 (644)
.++-.--+..++|+|--- +.+|=-+++.+|+..|- .|..|.+.++.|+|-|..|..+|+
T Consensus 89 id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~ 168 (409)
T PRK11790 89 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSV 168 (409)
T ss_pred ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHH
Confidence 444333346889998532 33555678888888763 245689999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCC
Q 006454 402 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRT 477 (644)
Q Consensus 402 ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S----~~~g~ 477 (644)
.+... |+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.- ..-+.
T Consensus 169 ~~~~f-----Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~l 220 (409)
T PRK11790 169 LAESL-----GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNM 220 (409)
T ss_pred HHHHC-----CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhc
Confidence 88642 64 578888631 1 0010 01 123479999986 88876321 12258
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCC-C--CCcccCCeeec-ccCCCccccchh
Q 006454 478 FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSP-F--DPFEYGDNVFV-PGQANNAYIFPG 551 (644)
Q Consensus 478 Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~--wT~GraifASGSP-F--~pV~~~Gk~~~-p~Q~NN~yiFPG 551 (644)
|+++.+..|. +.-++.-.|. .++-=|+|+. ...|+ |.+-|.- | +|..-+..... --+..|+++-|=
T Consensus 221 i~~~~l~~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPH 292 (409)
T PRK11790 221 IGAEELALMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 (409)
T ss_pred cCHHHHhcCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCc
Confidence 9999999995 4556665554 4555444441 23566 3333321 2 22211100001 123468999998
Q ss_pred hhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 006454 552 LGLGLIMSGAIRVHDDMLLAAAEALAGQVTQE 583 (644)
Q Consensus 552 iglG~l~s~a~~Itd~M~laAA~aLA~~v~~e 583 (644)
+|-...-+ ...|...+++.+......+
T Consensus 293 ia~~t~ea-----~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 293 IGGSTQEA-----QENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred CCCCHHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 88543222 3445566666666655433
No 273
>PRK06823 ornithine cyclodeaminase; Validated
Probab=61.23 E-value=62 Score=34.88 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cCCCCCHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 459 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~ea 459 (644)
.-.++.++|+|.-+-..++.++.. .. -++|+++|+. .++ .+.+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TD------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999988887776553 12 2788888873 222 23333222211 1123689999
Q ss_pred HhccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHHh
Q 006454 460 VNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEAY 513 (644)
Q Consensus 460 V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~edA~ 513 (644)
++. .||++-+++. ..+|..+.++ +.-.|-+...-+ .+.|+.++-.-
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHHh
Confidence 986 9999875432 2467777775 455677776433 36788886543
No 274
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=60.49 E-value=11 Score=38.04 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+++|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999988754 253 58899975
No 275
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=60.47 E-value=8.5 Score=40.80 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 433 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~ 433 (644)
+|++++|+++|.|..|-=+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999998888877765 476 88999999866543
No 276
>PRK08618 ornithine cyclodeaminase; Validated
Probab=60.08 E-value=45 Score=35.74 Aligned_cols=101 Identities=12% Similarity=0.217 Sum_probs=58.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCCCHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 458 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 458 (644)
...++.|+|+|..|-.++..+... .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999987777655432 244 789999884 222 22333333211 112467888
Q ss_pred HHhccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCH
Q 006454 459 AVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTA 509 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEct~ 509 (644)
+++. .|++|-++..+. .|+ +.+ ...--|.++-- --.+.|+.+
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l------~~G~hV~~iGs~~p~~~E~~~ 232 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKL------KKGVHINAVGSFMPDMQELPS 232 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-Hhc------CCCcEEEecCCCCcccccCCH
Confidence 8875 888886654331 233 333 23444555532 224678877
No 277
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=59.58 E-value=1.1e+02 Score=39.10 Aligned_cols=144 Identities=16% Similarity=0.244 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCCccceecccCCCC-------cHHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceE
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANH-------NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 387 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~-------nAf~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~ri 387 (644)
-+.+++.-+.|....+|| |++.. .-+++..+|.-.+|+.+=|-+|.+.-. .. |
T Consensus 425 ~~v~eaaLk~~~G~~IIN---sIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~-e~-----r----------- 484 (1178)
T TIGR02082 425 WAVLEAGLKCIQGKCIVN---SISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTA-DR-----K----------- 484 (1178)
T ss_pred HHHHHHHHHhcCCCCEEE---eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCH-HH-----H-----------
Confidence 455666666776778888 88874 267788899999888887777755321 11 1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhcc----
Q 006454 388 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI---- 463 (644)
Q Consensus 388 v~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v---- 463 (644)
+-|++.+++.+.++.|++. ++|| +|. |+.+-+-. .+ .+..++. . -.|+++.+
T Consensus 485 ---------~~i~~~~~~~~~~~~Gi~~----edIi-~DP-~i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~ 540 (1178)
T TIGR02082 485 ---------IEICKRAYNILTEKVGFPP----EDII-FDP-NILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEEL 540 (1178)
T ss_pred ---------HHHHHHHHHHHHHHcCCCH----HHEE-EeC-CccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhC
Confidence 2288888888775579974 5666 777 22221111 11 1122222 2 33667766
Q ss_pred -CCcEEEEccCCCCCCC-----HHHHHH----HHcCCCCcEEEecCCCCCC
Q 006454 464 -KPTILIGTSGQGRTFT-----KEVVEA----MASLNEKPIIFSLSNPTSQ 504 (644)
Q Consensus 464 -kPtvLIG~S~~~g~Ft-----eevv~~----Ma~~~erPIIFaLSNPts~ 504 (644)
..-+++|+|...=-|. .+++.+ || -..=.=+|+.||...
T Consensus 541 pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a--~~~Gld~aIvnp~~~ 589 (1178)
T TIGR02082 541 PDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHA--IRAGMDMGIVNAGKI 589 (1178)
T ss_pred CCCceEEEecccccCCCCCchHHHHHHHHHHHHH--HHcCCchhhcChhhh
Confidence 4569999999875553 344332 11 122233566688754
No 278
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.50 E-value=35 Score=35.37 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..+++.++||.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4456778999999843 444445444444 35 368888875
No 279
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=59.47 E-value=23 Score=38.45 Aligned_cols=130 Identities=20% Similarity=0.361 Sum_probs=77.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc-ccCCCccCCchhhhhhccccC--CCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL-IVSSRLESLQHFKKPWAHEHE--PVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL-i~~~R~~~L~~~k~~fA~~~~--~~~~L 456 (644)
++.+..||.++|+|..|+.+|-.|+.. |++ +++.++|-.== +--..+ +|++ -.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~M-DLqH-~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMM-DLQH-GSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhh-hhcc-ccccccCCceEecCcc
Confidence 455678999999999999999888763 774 67889996411 111112 2443 334544311 11222
Q ss_pred HHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-----
Q 006454 457 VDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ----- 517 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~----- 517 (644)
. +-+ ..++.|=+.+..+. .=+.+|.++.++.+.-|++-.|||. |.++|--
T Consensus 84 ~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 S-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred c-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 1 111 24555544443332 1246777778899999999999998 6665521
Q ss_pred --CcEEEeeCCCCCCcc
Q 006454 518 --GRAIFASGSPFDPFE 532 (644)
Q Consensus 518 --GraifASGSPF~pV~ 532 (644)
-.-+|.||.=.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 134566776655554
No 280
>PLN02688 pyrroline-5-carboxylate reductase
Probab=59.42 E-value=19 Score=36.66 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=54.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchhhhhhcccc-CCCCCHHHHHhcc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAI 463 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lv-Ds~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~v 463 (644)
||.|+|.|..|..||+-|++. |.- -..+|+++ |+. .++ .+ .+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998653 420 02467877 552 111 11 122111 122467788764
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 502 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 502 (644)
.|++| ++-.+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66655 33333 4577888777543 3445666665544
No 281
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=59.24 E-value=30 Score=37.45 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=26.2
Q ss_pred CHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 455 ELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 455 ~L~eaV~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
.|.+.... .|+ ++|-|-..+ |...++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45555655 787 777665333 5566999998 7899997
No 282
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=58.98 E-value=45 Score=33.66 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=43.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhh----hhhcc-ccCCCCCHHHH
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 459 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~ea 459 (644)
||+|.|| |..|-.+++.|+.. |- ..+++++|+... ..+.+.+.... ..+-. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 77887777777542 31 136777875211 01111121111 11111 22223467888
Q ss_pred HhccCCcEEEEccCCC
Q 006454 460 VNAIKPTILIGTSGQG 475 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~ 475 (644)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999988753
No 283
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.91 E-value=27 Score=37.00 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=71.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhhhhhcccc-CCCCCHHHHHhccC
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 464 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vk 464 (644)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++..-. .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 4689999999999866653 366 2579999973 2211111 12444433221110 00134 356765
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 006454 465 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 526 (644)
Q Consensus 465 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT--~GraifASGS 526 (644)
.|++|=+.+.+ |- .=+++++.+.+++..-+|+=.|||. ++...-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88877555543 21 1246777888899999999999997 34444454442 1233666653
No 284
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=58.91 E-value=2.5e+02 Score=30.66 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=83.7
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEee-CC
Q 006454 456 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFAS-GS 526 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEct~edA~~wT~GraifAS-GS 526 (644)
+.++=+.+||+++|+.++.+ +.-.-+.+=.++-||=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 33444456799999988754 33322322225556668888899873 4577777776532 111111 31
Q ss_pred CCCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHH
Q 006454 527 PFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAA 606 (644)
Q Consensus 527 PF~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~ 606 (644)
.||. ..+.||-.=|-..+|.+.-+..+..---.|.+.+-++.+.-+.+ =+-|+.-.+-+...+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~----------pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL----------PMGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC----------CccHHHHHHHHhHHHHH
Confidence 1121 24678888888888888888777776667778777776653332 13344445555566666
Q ss_pred HHHHHHHH
Q 006454 607 EVAAKAYE 614 (644)
Q Consensus 607 aVa~~A~~ 614 (644)
.|++..++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 66655554
No 285
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=58.50 E-value=6.4 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALE 406 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~ 406 (644)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 286
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=57.87 E-value=13 Score=40.01 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
.+|+|+|||-+|+.+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 5 4688999864
No 287
>PRK06046 alanine dehydrogenase; Validated
Probab=57.86 E-value=69 Score=34.41 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCCCHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 458 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 458 (644)
.-.++.|+|+|..|...++.+... .++ ++++++|++ .+ ..+.+...+... .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRT----KS---SAEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCC----HH---HHHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 233 789999885 12 233333333211 112357888
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHH
Q 006454 459 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEE 511 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLS-NPts~aEct~ed 511 (644)
+++ .|+++-++... .+|..+.++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 79888765432 367777664 333466664 444579999874
No 288
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=57.79 E-value=38 Score=38.50 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=74.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HHH-hcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 385 QRFLFLGA-GEAGTGIAELIALE-ISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~-m~~-~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
-||.|+|| |..|..+|-.|+.. +.. .+|+ -..+.++|.+-=..++-.-+|.+-.-++-++..-..+-.|..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988652 100 0133 2478889874211111111133322233221110122346676
Q ss_pred ccCCcEEEEccCCCCC--------------CCHHHHHHHHc-CCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEee
Q 006454 462 AIKPTILIGTSGQGRT--------------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 524 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~-~~erPIIFaLSNPts~aEct~edA~~wT~G--raifAS 524 (644)
. .|++|=+.+.+.. .=+++.+.+.+ .+..-||+-.|||- ....--+++++.. .-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 6 8888866666421 12467777888 58999999999997 2333334444311 235555
Q ss_pred CC
Q 006454 525 GS 526 (644)
Q Consensus 525 GS 526 (644)
|.
T Consensus 251 gT 252 (444)
T PLN00112 251 LT 252 (444)
T ss_pred ec
Confidence 54
No 289
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=57.75 E-value=15 Score=35.49 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|++.++||+|+|..|.-.++.|.++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999888888763 4 467777643
No 290
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=57.69 E-value=13 Score=40.17 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=26.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
|+|+|||.||.-+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999988443 123 579999986443
No 291
>PRK06138 short chain dehydrogenase; Provisional
Probab=57.59 E-value=45 Score=32.68 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=40.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh--------cc-ccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW--------AH-EHE 451 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f--------A~-~~~ 451 (644)
.|++.+++|.||.. ||...|+..+.+ .| -++++++++. +.+...+... .+ +..
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRDA-------EAAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCCH-------HHHHHHHHHHhcCCeEEEEEcCCC
Confidence 36778999999832 344445554444 25 3588887641 1111111111 11 112
Q ss_pred CCCCHHHHHhcc-----CCcEEEEccCCC
Q 006454 452 PVKELVDAVNAI-----KPTILIGTSGQG 475 (644)
Q Consensus 452 ~~~~L~eaV~~v-----kPtvLIG~S~~~ 475 (644)
+..++.++++.+ ++|++|=+.+..
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 223566666554 789999877753
No 292
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.38 E-value=9.3 Score=40.40 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..+-|+|||-.|-|||...+.. |+ ++||+|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4578999999999999988764 65 69999984
No 293
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=57.13 E-value=15 Score=36.85 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888887653 4 46888875
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=56.70 E-value=7.4 Score=41.15 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=26.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
+|||+|+|.||+-.|+.+.... . ...+|.|+|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999998888875421 0 1357999997654
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=56.67 E-value=24 Score=38.00 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccC
Q 006454 359 DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES 438 (644)
Q Consensus 359 DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~ 438 (644)
+..+.-+=-+|.-+.+.........+.+++++|||+.|+..+.+. +..|. ++|+++|.. +.|
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R--- 205 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER--- 205 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH---
Confidence 334443334444433422222222333999999999997663322 22464 689998873 222
Q ss_pred Cchhhhhhccc--cCCCC-CHHHHHh----ccCCcEEEEccC
Q 006454 439 LQHFKKPWAHE--HEPVK-ELVDAVN----AIKPTILIGTSG 473 (644)
Q Consensus 439 L~~~k~~fA~~--~~~~~-~L~eaV~----~vkPtvLIG~S~ 473 (644)
|+..++.++-+ ..+.. ...+.+. ....|+.|=+|+
T Consensus 206 l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 33333333322 11111 2333332 236899999999
No 296
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.45 E-value=46 Score=36.78 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh--hhhhccccCCCCCHHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDAV 460 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~~~~~~~~L~eaV 460 (644)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++... .-+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~---~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCG---GFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeC---CCC-hHHh
Confidence 57789999999999998888764 363 5788886420 0000112110 0011100 011 2334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006454 461 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 526 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 526 (644)
+ ++|++|=.++.+ .-.+++.++.. ...||+ +.+|.- +.....+.|-.|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~----~~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELF----AREAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHH----HHhcCCCEEEEECC
Confidence 4 478888666665 34677776654 456776 233332 22235678888997
No 297
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=56.40 E-value=45 Score=35.99 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
|++.||.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999875
No 298
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.02 E-value=48 Score=32.76 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999841 344455554443 353 58888863
No 299
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.85 E-value=47 Score=32.79 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc---------c-c
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---------H-E 449 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA---------~-~ 449 (644)
.++..+++|.|| |..|..+|+.++ + .|. +++++++.- . .+......+. + +
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~----~-~G~-------~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELA----R-AGA-------AVAIADLNQ----D---GANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------eEEEEeCCh----H---HHHHHHHHHHhcCceEEEEECC
Confidence 356678999998 555555555554 3 353 577777641 1 1111111111 0 1
Q ss_pred cCCCCCHHHHHhcc-----CCcEEEEccCCC
Q 006454 450 HEPVKELVDAVNAI-----KPTILIGTSGQG 475 (644)
Q Consensus 450 ~~~~~~L~eaV~~v-----kPtvLIG~S~~~ 475 (644)
..+..++.++++.+ ++|++|-+.+..
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 65 VTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 12223566666654 389999988764
No 300
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=55.82 E-value=21 Score=39.04 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~ 405 (644)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 301
>PRK12828 short chain dehydrogenase; Provisional
Probab=55.71 E-value=24 Score=34.00 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++++.+++|.|| |..|..+|+.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 466789999997 445555555553 3 353 48888874
No 302
>PLN02240 UDP-glucose 4-epimerase
Probab=55.61 E-value=30 Score=36.07 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch------hhhhhcc-ccCC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 452 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~------~k~~fA~-~~~~ 452 (644)
.|+..||+|.|| |-.|..+++.|++ .| .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 7788778777764 24 3588887542100000000000 0011111 1122
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 006454 453 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 453 ~~~L~eaV~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 499 (644)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2357777777789999987765321 1335667776666567887533
No 303
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=55.55 E-value=13 Score=35.62 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
.||-|+|.|..|.+||+.|... | -+++.+|+. . +..+.....- .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g-------~~v~~~d~~----~---~~~~~~~~~g---~~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----G-------YEVTVYDRS----P---EKAEALAEAG---AEVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----T-------TEEEEEESS----H---HHHHHHHHTT---EEEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----C-------CeEEeeccc----h---hhhhhhHHhh---hhhhhhhhhHhhc--
Confidence 5899999999999999999643 5 358888863 1 1122222221 2234689999988
Q ss_pred CcEEEEccCCCCCCCHHHHHH--HH-cCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 006454 465 PTILIGTSGQGRTFTKEVVEA--MA-SLNEKPIIFSLSNPTSQSECTAEEAYTW 515 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~--Ma-~~~erPIIFaLSNPts~aEct~edA~~w 515 (644)
.|++|=+-.-+ .=.++++.. +. ...+..||.=+|+-+ +|.+-+-+-.+
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 57776432211 113455554 33 345666777777655 55555544443
No 304
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=55.40 E-value=13 Score=40.42 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=23.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 36666654
No 305
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=55.23 E-value=57 Score=34.07 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 502 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 502 (644)
+-|++||+|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 6799999999886 999999875 344457666566666
No 306
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=55.21 E-value=12 Score=41.37 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 11 1357778775
No 307
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=54.92 E-value=20 Score=40.58 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+++|||..|+-+++.|+.. |+.-.+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652111 2789999987
No 308
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=54.86 E-value=32 Score=38.57 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc----
Q 006454 372 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---- 447 (644)
Q Consensus 372 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA---- 447 (644)
..++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeE
Confidence 4444445567889999998888888899988754 4873 2223211 1111 10111111110
Q ss_pred -cccCCCCCHHHHHhccCCcEEEEc
Q 006454 448 -HEHEPVKELVDAVNAIKPTILIGT 471 (644)
Q Consensus 448 -~~~~~~~~L~eaV~~vkPtvLIG~ 471 (644)
.+..+...+.+.++..+||++||-
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122357888899999999984
No 309
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=54.84 E-value=7 Score=42.16 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=51.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh-------hhcc-ccCCCCCHHH
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-------PWAH-EHEPVKELVD 458 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~-------~fA~-~~~~~~~L~e 458 (644)
|+++|+|..|-.+++.|++. ... .++.+.|++ .+ .++.... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~---~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PE---KAERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HH---HHHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HH---HHHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988753 111 278888885 11 1222211 1111 1222245888
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 459 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
.+++ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 69999988755 788888875542 334444
No 310
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.77 E-value=33 Score=34.89 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.++||.|| |..|..+|+.++ + .| -++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~----~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQ----S-DG-------WRVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 57899998 444545555543 3 35 368888764
No 311
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=54.62 E-value=18 Score=36.55 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|+++|+||+|+|..|..-++.|+.+ | -+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999998888763 4 368888874
No 312
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=54.47 E-value=13 Score=35.27 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 388 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 388 v~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
.|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1123568999999655
No 313
>PRK06184 hypothetical protein; Provisional
Probab=54.45 E-value=16 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 46789999999999999988865 375 467777753
No 314
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=54.30 E-value=15 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=23.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|+|+|||.||...|..+.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999988764 254 36666665
No 315
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=54.26 E-value=75 Score=30.63 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMA 487 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma 487 (644)
+-|++|++|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4799999999875 999999985
No 316
>PRK07236 hypothetical protein; Provisional
Probab=54.08 E-value=18 Score=38.70 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
+...+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998876
No 317
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=53.79 E-value=61 Score=36.48 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=83.9
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc
Q 006454 358 DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 437 (644)
Q Consensus 358 DDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~ 437 (644)
|.-.||+--++-|++. .|..-+....+|+.|=|--|-|||..+.. .| | ++++.+-+
T Consensus 186 DNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-----A--~ViVtEvD--------- 241 (420)
T COG0499 186 DNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-----A--RVIVTEVD--------- 241 (420)
T ss_pred ccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-----C--eEEEEecC---------
Confidence 6778999999999874 56677889999999999999999988753 24 2 35543321
Q ss_pred CCchhhhhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHH
Q 006454 438 SLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE 511 (644)
Q Consensus 438 ~L~~~k~~fA~-~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~ed 511 (644)
|.+.-=|. ++-..-++.||++. .|++|=++|.-++.+.|-++.|. .=.|.+=+=- -.-|+..+.
T Consensus 242 ---PI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~GH-Fd~EI~~~~ 306 (420)
T COG0499 242 ---PIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAGH-FDVEIDVAG 306 (420)
T ss_pred ---chHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEecccc-cceeccHHH
Confidence 22111121 33334579999997 89999999999999999999994 4445433221 235666554
No 318
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=53.49 E-value=68 Score=35.22 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=26.7
Q ss_pred CceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~G-AGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..||.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899998 999999999988753 53 48888874
No 319
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=53.14 E-value=21 Score=36.36 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeec
Confidence 38999999999999998876 35 479999998
No 320
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.87 E-value=21 Score=39.78 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=24.1
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 006454 377 FLGGSLADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 377 ~~g~~L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
..|..++.++++|+|+|.+|+.+|+.|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556778899999999999999988864
No 321
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=52.81 E-value=1e+02 Score=33.61 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=61.0
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh-ccccCCCCC
Q 006454 377 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 455 (644)
Q Consensus 377 ~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f-A~~~~~~~~ 455 (644)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. +...+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 4456788999999999999999999997 43 54 4665666432 1111111 221 23
Q ss_pred HHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEecC
Q 006454 456 LVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLS 499 (644)
|.|.++. .|+++-..- ..++|+++.++.|. +.-+|.=.|
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNta 236 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTA 236 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECC
Confidence 8888886 898885422 12589999999995 444555333
No 322
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=52.77 E-value=49 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||-|+|+|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998752 53 57778864
No 323
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=52.59 E-value=90 Score=29.76 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 502 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 502 (644)
+-|++|++|..|. |+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG~--t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSGN--SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999874 999988864 334445554333333
No 324
>PRK06847 hypothetical protein; Provisional
Probab=52.21 E-value=19 Score=38.01 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.1
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~ 405 (644)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999988764
No 325
>PRK06392 homoserine dehydrogenase; Provisional
Probab=52.20 E-value=58 Score=35.42 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=49.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc----cCCCC--CHHH
Q 006454 386 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVK--ELVD 458 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~-~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~--~L~e 458 (644)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999876210 112321 12355679999888765322322211 1110 01112 5666
Q ss_pred HHhccCCcEEEEccC
Q 006454 459 AVNAIKPTILIGTSG 473 (644)
Q Consensus 459 aV~~vkPtvLIG~S~ 473 (644)
.++ .+|||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 655 58999999884
No 326
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=52.17 E-value=49 Score=36.43 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||.|+|+|..|..+|..++.. | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 789999999999999998753 5 357888874
No 327
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.91 E-value=87 Score=35.47 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
+.++|++|+|.|..|+..+++|.. .|. ++++.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 356899999999999999976653 363 57778854 111 11111100000 01112334454
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 006454 462 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 495 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 495 (644)
. .|++|=.++.+ .-.+++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 3 78888777766 34566555544 356776
No 328
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=51.82 E-value=21 Score=38.92 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
.||||+|+|.||+..|..|.+. |- .-+|.|+|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988642 21 1378999987543
No 329
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=51.77 E-value=14 Score=39.52 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
.+|||+|+|.||+..|+.|... + ..-+|.+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 124688887654
No 330
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=51.68 E-value=59 Score=33.76 Aligned_cols=86 Identities=12% Similarity=0.283 Sum_probs=51.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
||+|.|| |-.|--+++.|.+ .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888777653 13 36666653110 0011112235777888889
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 006454 465 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 465 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 499 (644)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654321 334556665554 46887544
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=50.85 E-value=30 Score=39.67 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999887754 353 47888863
No 332
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.83 E-value=20 Score=37.70 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988753 53 57777753
No 333
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=50.81 E-value=31 Score=38.23 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=58.4
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 386 RFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 386 riv~~GAGsAG~G-IA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. -+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5889999999998 9998875 363 57788864210 1111211111110 01 11 12333 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGS 526 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT-~GraifASGS 526 (644)
+|.+|=.++.+ --.+++.++.. ...||+ +.+|. ++.+. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 88888666666 35677777665 356665 33443 22332 3467778887
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.74 E-value=22 Score=39.53 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988864 25 368888874
No 335
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=50.69 E-value=75 Score=37.86 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE
Q 006454 344 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 423 (644)
Q Consensus 344 ~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~ 423 (644)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|..|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 1112221 2289999999999887777666654 476 7898
Q ss_pred EEccCCc
Q 006454 424 LVDSKGL 430 (644)
Q Consensus 424 lvDs~GL 430 (644)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8877644
No 336
>PRK13937 phosphoheptose isomerase; Provisional
Probab=50.60 E-value=58 Score=32.15 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.7
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMA 487 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma 487 (644)
+-|++|++|..|. |+++++.+.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHH
Confidence 4699999999885 999998874
No 337
>PRK07233 hypothetical protein; Provisional
Probab=50.53 E-value=17 Score=38.75 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 367788776
No 338
>PRK09126 hypothetical protein; Provisional
Probab=50.47 E-value=19 Score=38.24 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=25.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-----SGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4579999999999999988865 365 35666654
No 339
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.28 E-value=52 Score=32.84 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCCceEEEeCc-Ch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-Gs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++.++||.|+ |+ .|..+|+.+++ .|. +++++|+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~-----~G~-------~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALE-----EGA-------RVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 456789999998 43 55555555543 363 37777753
No 340
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.25 E-value=54 Score=35.38 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh--hhhhcc-ccCCCCCHHH
Q 006454 383 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 458 (644)
Q Consensus 383 ~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 458 (644)
+++||+|.|+ |-.|..+++.|.+ .| .+++.+|+..- ..+... ...+-. +..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888865 25 36888887421 001110 111111 1111223445
Q ss_pred HHhccCCcEEEEccCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 006454 459 AVNAIKPTILIGTSGQGR--T---------------FTKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 499 (644)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998875431 1 2356778777776678998644
No 341
>PRK09186 flagellin modification protein A; Provisional
Probab=50.23 E-value=49 Score=32.62 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=21.0
Q ss_pred CCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAG-sAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+++.+++|.||+ ..|..+|+.+ .+ .|. ++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l----~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAI----LE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHH----HH-CCC-------EEEEEecC
Confidence 467889999984 3444455544 33 353 46777653
No 342
>PRK08163 salicylate hydroxylase; Provisional
Probab=50.23 E-value=20 Score=38.16 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.9
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~ 405 (644)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999987764
No 343
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=50.21 E-value=35 Score=37.96 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc--
Q 006454 371 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-- 448 (644)
Q Consensus 371 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-- 448 (644)
+..++.-....|+..|++|+|-+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+....+.+..
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 445566666778889999999988899999998764 37632 112111 0111 101111111111
Q ss_pred ---ccCCCCCHHHHHhccCCcEEEEcc
Q 006454 449 ---EHEPVKELVDAVNAIKPTILIGTS 472 (644)
Q Consensus 449 ---~~~~~~~L~eaV~~vkPtvLIG~S 472 (644)
+..+...+.+.|+..|||.|||-|
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223468899999999999976
No 344
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=50.18 E-value=91 Score=34.21 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh
Q 006454 367 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 446 (644)
Q Consensus 367 vLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 446 (644)
+.|+.++|=.+..+.. .++.|+|+|.-+-. .++++....++ ++|++.|+. .+....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~----ql~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQART----QLEALKAVRDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHH----HHHHHHhhCCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 4456666666665533 47889999976544 44444443343 678877773 11222333233
Q ss_pred ccc----cCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHHhc
Q 006454 447 AHE----HEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEAYT 514 (644)
Q Consensus 447 A~~----~~~~~~L~eaV~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~edA~~ 514 (644)
.++ .....+++++|+. .|+++.++... ..|..+.|+ +.=-|-++ ||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 232 2345799999997 99999875432 377777776 33334444 4666789999976554
No 345
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=50.08 E-value=75 Score=33.02 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||.|+|+|..|..+|..|... | .+++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 799999999999999988653 4 357888864
No 346
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=49.99 E-value=60 Score=32.21 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5555555555543 363 57777764
No 347
>PRK08219 short chain dehydrogenase; Provisional
Probab=49.92 E-value=79 Score=30.36 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=38.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhh-----cc-ccCCCCCHH
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-----AH-EHEPVKELV 457 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f-----A~-~~~~~~~L~ 457 (644)
.+++|.|| |..|..+++.|++ . .+++++|++. +.++...... -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57889887 4455555555432 1 3578887741 1121111111 01 112224567
Q ss_pred HHHhcc-CCcEEEEccCCC
Q 006454 458 DAVNAI-KPTILIGTSGQG 475 (644)
Q Consensus 458 eaV~~v-kPtvLIG~S~~~ 475 (644)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999988764
No 348
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=49.57 E-value=64 Score=35.35 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999865
No 349
>PRK06182 short chain dehydrogenase; Validated
Probab=49.52 E-value=51 Score=33.21 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhh---hhh-ccccCCCCCHH
Q 006454 383 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK---KPW-AHEHEPVKELV 457 (644)
Q Consensus 383 ~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k---~~f-A~~~~~~~~L~ 457 (644)
+..++||.|| |..|..+|+.+ .+ .| -++++++++- +.+.... ..+ .-+..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l----~~-~G-------~~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL----AA-QG-------YTVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH----HH-CC-------CEEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 4578999997 33444444444 33 35 3577776641 1121111 111 11222223556
Q ss_pred HHHhcc-----CCcEEEEccCCC
Q 006454 458 DAVNAI-----KPTILIGTSGQG 475 (644)
Q Consensus 458 eaV~~v-----kPtvLIG~S~~~ 475 (644)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666654 799999887754
No 350
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.32 E-value=2.3e+02 Score=34.00 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCC
Q 006454 458 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFD 529 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~--------aEct~edA~~wT~GraifASGSPF~ 529 (644)
+.=+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-+++..+... ..-..| ..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~~g--k~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA-LAKKQG--KT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH-HHHHcC--Cc
Confidence 333456899999877743 444444444445566688888998752 23343333332100 000122 23
Q ss_pred CcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHH
Q 006454 530 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 572 (644)
Q Consensus 530 pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laA 572 (644)
||.. ...||..=|-..+|-+--++.+...- ++.+-+-.|
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a 523 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAA 523 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 4443 24666666777777665555544432 344444444
No 351
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.00 E-value=85 Score=34.56 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
..+||+|+|.|-.|..+|+.+.+ .|. +++.+|.+- . .+.. ..+..+. ......+..+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~- 58 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE- 58 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc-
Confidence 34789999999999888777653 363 588888641 1 1211 1111110 0011222223
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 006454 463 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 538 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk~~ 538 (644)
++|++|=..+.. .-.+.+.++..+. -||| |++ |. +-++..+.+.+.|-.||| +|||-
T Consensus 59 -~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 -QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred -CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 478999888776 4466666666543 3432 232 11 112222224567888997 67653
No 352
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=48.94 E-value=19 Score=38.55 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999988865 364 46666654
No 353
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=48.92 E-value=28 Score=36.88 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=85.0
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCC-CH
Q 006454 378 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK-EL 456 (644)
Q Consensus 378 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~-~L 456 (644)
-|..++ ++||+||=--|.+||+.|... + +|+++|.+ ||-+.+-.+.-... .+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 899999999999999988542 2 79999974 33333321110101 11
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcccCCe
Q 006454 457 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDN 536 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGSPF~pV~~~Gk 536 (644)
.+ + .++||++|-++|-||+ +++.++.. + |=+|=.=||. ++-.=...++.. ..
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~--~~~sD~~I~~~~------------------nt 142 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK--GDGSDKTIYEIN------------------NT 142 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC--ccCcchhhhhcc------------------cH
Confidence 11 1 2479999999999996 99888765 3 6677778888 444333333321 11
Q ss_pred eeccc--CCCccccchhh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 006454 537 VFVPG--QANNAYIFPGL--GLGLIMSGAIRVHDDMLLAAAEALA 577 (644)
Q Consensus 537 ~~~p~--Q~NN~yiFPGi--glG~l~s~a~~Itd~M~laAA~aLA 577 (644)
.-.+. -+.+..+.=-. |+.+=.||--.+|=+.+..|+..+-
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 11222232223 4555567777788887777766553
No 354
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=48.70 E-value=54 Score=39.97 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc--cCCCCCHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELV 457 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~---m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~ 457 (644)
...+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|++|.+.+.+.-++..+...|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999874 223334421 123467999888876632233333333322 12234567
Q ss_pred HHHhccCCc--EEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006454 458 DAVNAIKPT--ILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 458 eaV~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 497 (644)
|.+....++ |+|=+++.. -....+.+++. +...+|-|
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVta 571 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVISA 571 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEcC
Confidence 777766665 899888733 34456667776 45667754
No 355
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.64 E-value=12 Score=45.34 Aligned_cols=160 Identities=22% Similarity=0.294 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCccceecccCCCCc-------------HHHHHHHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCC
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANHN-------------AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGS 381 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~n-------------Af~lL~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~ 381 (644)
.|.++|+...|=| |-| |==|.+-. |..-=.||-.++.||.++-| ++
T Consensus 369 QEvlKa~sgKF~P--L~Q-~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fq------------------eK 427 (1013)
T KOG2012|consen 369 QEVLKACSGKFTP--LKQ-WLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQ------------------EK 427 (1013)
T ss_pred HHHHHhhccCccc--hhH-heehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHH------------------HH
Confidence 5788888888766 344 53332211 11222367777777776655 68
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc--CC--CCCHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP--VKELV 457 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~--~~~L~ 457 (644)
|.++++.++|||+.||-.-+-++.. |+.--+ ...|.+.|-+ +|.++ +|+..- -| |+. .. ...-+
T Consensus 428 L~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDmD-~IEkS---NLnRQF-LF-R~~dVgk~KSe~AA 495 (1013)
T KOG2012|consen 428 LADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDMD-HIEKS---NLNRQF-LF-RPWDVGKPKSEVAA 495 (1013)
T ss_pred HhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEeccc-hhhhc---ccccee-ec-cccccCchHHHHHH
Confidence 8999999999999998666555432 553111 2357777765 44443 244311 11 221 11 13467
Q ss_pred HHHhccCCcEEEE-------ccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 006454 458 DAVNAIKPTILIG-------TSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 522 (644)
Q Consensus 458 eaV~~vkPtvLIG-------~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~Graif 522 (644)
+|+....|++.|= --+ -++|+.+--+.+- =++=||=|= ||-.|-|+||+|
T Consensus 496 ~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 496 AAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 8999999999863 333 2478877666552 123345442 577788888887
No 356
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=48.59 E-value=20 Score=40.43 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|++-+|+++|+|..|+-+++-|+.. |+ ++|.++|.+
T Consensus 17 ~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 17 ALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 47789999999999999999999875 76 789999986
No 357
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=48.13 E-value=83 Score=31.84 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhh----hhhcc-ccCCCCCHHHH
Q 006454 386 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 459 (644)
Q Consensus 386 riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~ea 459 (644)
||+|.|| |..|..+++.+.+ .| .+++++|+. .....+.+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778875 7777777766653 24 356677642 111011111110 01111 22223457777
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 006454 460 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 497 (644)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665533111 2456677776655677773
No 358
>PRK06475 salicylate hydroxylase; Provisional
Probab=48.00 E-value=21 Score=38.60 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999877754
No 359
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=47.89 E-value=25 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456899999999999999988865
No 360
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=47.80 E-value=18 Score=38.84 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=48.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCC----CCC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP----VKE 455 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~----~~~ 455 (644)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|+ ..|-+..+- ...
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 468889999999999999999999875 76 78999998732 221 122 222221111 124
Q ss_pred HHHHHhccCCcEEEE
Q 006454 456 LVDAVNAIKPTILIG 470 (644)
Q Consensus 456 L~eaV~~vkPtvLIG 470 (644)
..+-++.+.|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 566677778888773
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=47.64 E-value=25 Score=39.28 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+.+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999888764 25 358889875
No 362
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.57 E-value=70 Score=35.98 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=58.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
.++||+|+|.|-.|.++|++|.. | -++++.|.+-. .+ ..+...+..+... . -+ .+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~------g-------~~v~v~D~~~~---~~-~~~~~~~~~~~~~--~-~~-~~~~~- 62 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN------K-------YDVIVYDDLKA---NR-DIFEELYSKNAIA--A-LS-DSRWQ- 62 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC------C-------CEEEEECCCCC---ch-HHHHhhhcCceec--c-CC-hhHhh-
Confidence 45799999999999999999851 5 35888885421 11 1011110111111 0 01 12233
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeCC
Q 006454 463 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASGS 526 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~-GraifASGS 526 (644)
++|.+|=.++.+ .=++++.++.. ...||+ +. .|-++.+.+ .+.|-.|||
T Consensus 63 -~~d~vV~SPgI~-~~~p~~~~a~~--~gi~v~-------~e----~el~~~~~~~~~~IaVTGT 112 (454)
T PRK01368 63 -NLDKIVLSPGIP-LTHEIVKIAKN--FNIPIT-------SD----IDLLFEKSKNLKFIAITGT 112 (454)
T ss_pred -CCCEEEECCCCC-CCCHHHHHHHH--CCCcee-------cH----HHHHHHHhcCCCEEEEECC
Confidence 478777666665 23555555543 356665 12 333455543 367777887
No 363
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=47.31 E-value=40 Score=36.08 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 503 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPts 503 (644)
+-|++||+|..|. |+++++++.. ...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999886 9999999853 334466665566663
No 364
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.19 E-value=25 Score=38.63 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 25 5699999864
No 365
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=47.19 E-value=30 Score=38.67 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=36.6
Q ss_pred HHHcCCCceeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 006454 347 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 426 (644)
Q Consensus 347 ~ryr~~~~~FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvD 426 (644)
++|....+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 456667789999888888 246778999999733 344444444433 353 567777
Q ss_pred cC
Q 006454 427 SK 428 (644)
Q Consensus 427 s~ 428 (644)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 366
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=47.11 E-value=24 Score=36.64 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5689999999999998877654 353 588888764
No 367
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=46.97 E-value=24 Score=41.20 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=28.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
-+..||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 356899999999999999988875 253 47888874
No 368
>PLN02427 UDP-apiose/xylose synthase
Probab=46.94 E-value=66 Score=34.52 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=50.5
Q ss_pred HHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh-------hhhh
Q 006454 375 MKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-------KKPW 446 (644)
Q Consensus 375 lr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~-------k~~f 446 (644)
+.+.||+++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+. ...|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 457899999999999996 88888888877652 12 3677787531 110111100 1112
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 006454 447 AH-EHEPVKELVDAVNAIKPTILIGTSGQG 475 (644)
Q Consensus 447 A~-~~~~~~~L~eaV~~vkPtvLIG~S~~~ 475 (644)
.+ +-.....+.++++. +|++|=+.+..
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~~ 97 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAIC 97 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEccccc
Confidence 11 11222457777875 89999877653
No 369
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.92 E-value=16 Score=40.06 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..+..||||+|+|.||+..|+.|. + . .-+|.|+|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 355679999999999998876652 1 1 2358888864
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=46.75 E-value=26 Score=39.26 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=31.5
Q ss_pred CcEEEeeCCC-------CCCc-ccCCeeecccCCCccccchhhhHHHHHhCCcc
Q 006454 518 GRAIFASGSP-------FDPF-EYGDNVFVPGQANNAYIFPGLGLGLIMSGAIR 563 (644)
Q Consensus 518 GraifASGSP-------F~pV-~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~ 563 (644)
=.+|+|||-= |+-. +++|+.+++.+=-|..-|.|==-++|=++++-
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 3578899851 2222 35789999999999999988555555555553
No 371
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=46.73 E-value=88 Score=29.90 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 006454 363 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 419 (644)
Q Consensus 363 TaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr 419 (644)
.-.+.-+|+|.+|.-.|.++. +|.|. |||-=+|-+++ .|.+.+|..
T Consensus 10 ~rG~~~~Gvl~~L~~~~~~~d----~i~Gt-SaGal~a~~~a------~g~~~~~~~ 55 (175)
T cd07205 10 ARGLAHIGVLKALEEAGIPID----IVSGT-SAGAIVGALYA------AGYSPEEIE 55 (175)
T ss_pred HHHHHHHHHHHHHHHcCCCee----EEEEE-CHHHHHHHHHH------cCCCHHHHH
Confidence 334567899999988776432 56666 34433443332 266666544
No 372
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=46.64 E-value=79 Score=33.72 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
.+++++|.|+|..|...+.+.. ..|. ++++.+|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak-----~~G~------~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAV-----AAGA------SQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-----HcCC------CcEEEEcC
Confidence 4689999999876654433332 2464 46887775
No 373
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=46.56 E-value=25 Score=38.20 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998764 54 36666665444
No 374
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=46.54 E-value=23 Score=39.04 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
.+|++|=||++|||..|--++++|+.. |+ ++|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 467889999999999999999999874 75 78889987644
No 375
>PLN02268 probable polyamine oxidase
Probab=46.48 E-value=7.6 Score=42.21 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~ 405 (644)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999976
No 376
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.31 E-value=28 Score=36.89 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..+|+|+|||.||...|-+|...- +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999988886520 0154 57778874
No 377
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=46.27 E-value=16 Score=34.17 Aligned_cols=107 Identities=23% Similarity=0.268 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 006454 362 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 441 (644)
Q Consensus 362 GTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~ 441 (644)
-...-.+|-++..... ++.||.++|+|..+ .+|..++..+....++.. -....+.+.+. .+.... ..+ .
T Consensus 18 ~~~i~~aa~~i~~~~~-----~gg~i~~~G~G~S~-~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~--~~~-~ 86 (138)
T PF13580_consen 18 AEAIEKAADLIAEALR-----NGGRIFVCGNGHSA-AIASHFAADLGGLFGVNR-ILLPAIALNDD-ALTAIS--NDL-E 86 (138)
T ss_dssp HHHHHHHHHHHHHHHH-----TT--EEEEESTHHH-HHHHHHHHHHHCHSSSTS-SS-SEEETTST-HHHHHH--HHT-T
T ss_pred HHHHHHHHHHHHHHHH-----CCCEEEEEcCchhh-hHHHHHHHHHhcCcCCCc-ccccccccccc-hHhhhh--ccc-c
Confidence 3334444555554443 45789999999888 456655555432111100 00011111111 000000 001 1
Q ss_pred hhhhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHH
Q 006454 442 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMA 487 (644)
Q Consensus 442 ~k~~fA~~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma 487 (644)
+...|+ +.+.+..+.-+-|+||+.|+.|. |+-+|+++.
T Consensus 87 ~~~~~~------~~~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 87 YDEGFA------RQLLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp GGGTHH------HHHHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred hhhHHH------HHHHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 111222 22444433345799999999997 899998874
No 378
>PLN02676 polyamine oxidase
Probab=46.23 E-value=53 Score=37.21 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35679999999999999998875
No 379
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.16 E-value=1e+02 Score=31.92 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=53.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhcc
Q 006454 385 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 463 (644)
Q Consensus 385 ~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v 463 (644)
.||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776531 232 3456677752 111111 111 1112367888876
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 497 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 497 (644)
+||++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888643 346666665543 5788865
No 380
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=45.84 E-value=24 Score=37.59 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 253 688899764
No 381
>PRK06841 short chain dehydrogenase; Provisional
Probab=45.84 E-value=41 Score=33.17 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++++.+++|.|| |..|..+|+.++ + .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999997 444555555543 3 363 57777764
No 382
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=45.81 E-value=49 Score=36.49 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=37.3
Q ss_pred CHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCH
Q 006454 455 ELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTA 509 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEct~ 509 (644)
-+.|.+++ -|+.|=+.-.|| +.|+|+|++|. .-.+|.=|+--+ -++|+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCccccc
Confidence 35666765 899998877766 78999999995 677888887544 4566664
No 383
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=45.70 E-value=1e+02 Score=30.66 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHh
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 461 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 461 (644)
.++.||.|+|.|..+ .+|..+...|..+.++.. --.+++..+....+.. - .+-..+...|++ ...+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~-~~d~~~~~~~~~-------~~~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-V-SNDFGYDYVFSR-------YVEAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-h-hccCCHHHHHHH-------HHHHh-
Confidence 457899999999987 567777655532112110 0122322211111110 0 000111112221 11111
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCC
Q 006454 462 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 500 (644)
Q Consensus 462 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 500 (644)
.-+-|++|++|..|. |+++++.+. +...-|+|-=-+|
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 125699999999875 999998874 3334455543333
No 384
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=45.49 E-value=1.5e+02 Score=30.92 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.3
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 456 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
+.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 4455665 78899887754 58999999998 6889987
No 385
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.44 E-value=87 Score=34.69 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=60.9
Q ss_pred CCC-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHH
Q 006454 382 LAD-QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 460 (644)
Q Consensus 382 L~d-~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 460 (644)
++. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ -+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999998753 22 124778886421 000011211 11111110 011 234
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 006454 461 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 526 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT~GraifASGS 526 (644)
. ++|.+|=.++.+ .-.+++.++.+ ..-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT 116 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS 116 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC
Confidence 3 478777666665 34666666654 346764 33443 333345678888997
No 386
>PRK08507 prephenate dehydrogenase; Validated
Probab=45.38 E-value=99 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
||.|+|.|..|..+|..+... |. ..++|.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~-----~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GL-----ISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CC-----CCEEEEEcCC
Confidence 799999999999999888653 54 2468888874
No 387
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.23 E-value=28 Score=36.69 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=27.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999777652 5 4688998764
No 388
>PRK07774 short chain dehydrogenase; Provisional
Probab=45.17 E-value=82 Score=30.91 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=22.7
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++++.++||.|| |..|..+|+.+ .+ .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l----~~-~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEAL----AR-EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHH----HH-CC-------CEEEEEeCC
Confidence 466788999997 54444444444 33 35 358888764
No 389
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.14 E-value=53 Score=34.48 Aligned_cols=107 Identities=14% Similarity=0.205 Sum_probs=56.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
.||.|+|+|.-|-.+|.-|+. .|.- ...+|+++|+. . +++......|. .....+..|+++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r~----~---~~~~~l~~~~g--~~~~~~~~e~~~~-- 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDLN----V---SNLKNASDKYG--ITITTNNNEVANS-- 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECCC----H---HHHHHHHHhcC--cEEeCCcHHHHhh--
Confidence 379999999999999988864 2531 23578888863 1 11222221121 1112345555553
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhcccC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQ 517 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEct~edA~~wT~ 517 (644)
+|++| ++-.+ .--++|++.+..+ .+..+|..+. |=++-++.-+|.+
T Consensus 64 aDiIi-LavkP-~~~~~vl~~l~~~~~~~~lvISi~-----AGi~i~~l~~~l~ 110 (272)
T PRK12491 64 ADILI-LSIKP-DLYSSVINQIKDQIKNDVIVVTIA-----AGKSIKSTENEFD 110 (272)
T ss_pred CCEEE-EEeCh-HHHHHHHHHHHHhhcCCcEEEEeC-----CCCcHHHHHHhcC
Confidence 56554 33333 2345555555432 2334665554 3334555555543
No 390
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=45.11 E-value=39 Score=36.13 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 503 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPts 503 (644)
+-|++||+|..|. |+++++.+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999886 9999998853 333477776667763
No 391
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.03 E-value=25 Score=38.80 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999998887653 5 4788999864
No 392
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=45.01 E-value=60 Score=33.76 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=50.2
Q ss_pred CceEEEeCcChHHHHHHHH-HHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhc
Q 006454 384 DQRFLFLGAGEAGTGIAEL-IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 462 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~l-l~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 462 (644)
..||.|+|+| +++.. .+.++.+..+. ..-+.++|++ . +....+.+.|--+ .-..++.|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 34432 33333321110 1335555653 1 1122333333222 235789999998
Q ss_pred cCCcEEEEccCCCCCCCHHHHH-HHHc----CCCCcEEE
Q 006454 463 IKPTILIGTSGQGRTFTKEVVE-AMAS----LNEKPIIF 496 (644)
Q Consensus 463 vkPtvLIG~S~~~g~Fteevv~-~Ma~----~~erPIIF 496 (644)
-++|+++ ..++. .+..|++. ++.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7778877 44434 46666654 3432 56788654
No 393
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.01 E-value=74 Score=31.52 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=22.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++.+++|.||+. ||...++..+.+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~---giG~~ia~~l~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASS---GIGRAAAKLFAR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 46778999999753 334444444443 363 58888764
No 394
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=44.98 E-value=26 Score=34.80 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=40.5
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh-------hccccCC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-------WAHEHEP 452 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~-------fA~~~~~ 452 (644)
.+.+++++|.|| |.-|..||+.+ .+ .|. ++.++|++. . .++..... +.-+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l----~~-~G~-------~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~D~~~ 63 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERY----LA-EGA-------RVVIADIKP----A---RARLAALEIGPAAIAVSLDVTR 63 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-cCC-------EEEEEcCCH----H---HHHHHHHHhCCceEEEEccCCC
Confidence 467889999997 43444444444 33 363 578887641 1 11111111 1112222
Q ss_pred CCCHHHHHhcc-----CCcEEEEccCCC
Q 006454 453 VKELVDAVNAI-----KPTILIGTSGQG 475 (644)
Q Consensus 453 ~~~L~eaV~~v-----kPtvLIG~S~~~ 475 (644)
..++.++++.+ ++|+||=+.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 64 QDSIDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 23566666654 689999776643
No 395
>PRK07589 ornithine cyclodeaminase; Validated
Probab=44.81 E-value=2.7e+02 Score=30.71 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=65.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc---CCCCCHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 460 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~eaV 460 (644)
-.++.|+|+|.-+..-++.++.. ..+ ++|+++|+. .. ..+.+...+.+.. ....+++|++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PA---ATAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HH---HHHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887776666553 233 788888763 22 2333333333211 1136899999
Q ss_pred hccCCcEEEEccCCC---CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 006454 461 NAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 512 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEct~edA 512 (644)
+. .||++-++... -+|..+.++. .--|-++ |+--.+-|+.++-.
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 87 99999876432 3678777752 2235555 44445789998753
No 396
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=44.75 E-value=48 Score=36.83 Aligned_cols=68 Identities=26% Similarity=0.530 Sum_probs=50.9
Q ss_pred CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCC-cEEEecCCCCCCCCCCHHHHhcccCCcEE--------Eee
Q 006454 454 KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEK-PIIFSLSNPTSQSECTAEEAYTWSQGRAI--------FAS 524 (644)
Q Consensus 454 ~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~er-PIIFaLSNPts~aEct~edA~~wT~Grai--------fAS 524 (644)
..+.+.++.-|||++|++-..+ |+=-+.+.+.+.+-+ |||.=.| |+ ++.|-.||+= +.+
T Consensus 72 ~~~~~~~~~~~pd~vIlID~pg--FNlrlak~lk~~~~~~~viyYI~-Pq---------vWAWr~~R~~~i~~~~D~ll~ 139 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILIDYPG--FNLRLAKKLKKRGIPIKVIYYIS-PQ---------VWAWRPGRAKKIKKYVDHLLV 139 (373)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC--ccHHHHHHHHHhCCCceEEEEEC-Cc---------eeeeCccHHHHHHHHHhheeE
Confidence 4588888899999999999965 999999988776544 7888777 65 6888888751 345
Q ss_pred CCCCCCccc
Q 006454 525 GSPFDPFEY 533 (644)
Q Consensus 525 GSPF~pV~~ 533 (644)
==||++=-|
T Consensus 140 ifPFE~~~y 148 (373)
T PF02684_consen 140 IFPFEPEFY 148 (373)
T ss_pred CCcccHHHH
Confidence 557764333
No 397
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=44.66 E-value=27 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 25 468888874
No 398
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=44.65 E-value=1.2e+02 Score=32.07 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=50.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... .. . .. + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~~--~-------~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------GD--L-------GM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------cc--c-------cc----C--CC
Confidence 6999999997775 77777666654 34 3444443221100 00 0 00 1 14
Q ss_pred CcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 502 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 502 (644)
-|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999885 899998874 444557666555554
No 399
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=44.65 E-value=92 Score=32.31 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.||.|+|.|..|..+|..+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999999865 25 257777764
No 400
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=44.61 E-value=2e+02 Score=29.17 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=28.3
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 455 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
.+.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 35566665 78999888765 58889999998 5779885
No 401
>PRK06753 hypothetical protein; Provisional
Probab=44.58 E-value=27 Score=36.90 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~ 405 (644)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888765
No 402
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=44.53 E-value=26 Score=39.79 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
-.|||+|+|.+|++||..+.. .|+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988865 375 488888763
No 403
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=44.49 E-value=32 Score=37.41 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=43.5
Q ss_pred eecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHH
Q 006454 356 FNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 405 (644)
Q Consensus 356 FNDDiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~ 405 (644)
|-----+||-++.-+++-+...+|..|++..+-|+|| |..|.+||+.|.-
T Consensus 139 ~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 139 FTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred cccCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 3333458899999999999999999999999999997 8999999999864
No 404
>PRK12939 short chain dehydrogenase; Provisional
Probab=44.49 E-value=95 Score=30.30 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAE-----AGA-------TVAFNDGL 40 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 356789999997 5666666666653 353 57777653
No 405
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=44.46 E-value=26 Score=39.35 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988764
No 406
>PRK07045 putative monooxygenase; Reviewed
Probab=44.45 E-value=28 Score=37.24 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 407
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.34 E-value=1.7e+02 Score=32.12 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHhcCCCccceecccCCCCcHHHHHHHHcCCCceee-cCCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCcChHHHH
Q 006454 321 VKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFN-DDIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTG 398 (644)
Q Consensus 321 v~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FN-DDiQGTaaVvLAgll~Alr~~g-~~L~d~riv~~GAGsAG~G 398 (644)
+-.+| .++++ +-.+.. .+.+.+.+| ..+||+| .|-..-=.=+||=++.-.+..| +++++.+|.++|-+.- +
T Consensus 96 vls~y-~D~Iv--~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~ 168 (336)
T PRK03515 96 VLGRM-YDGIQ--YRGYGQ-EIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--N 168 (336)
T ss_pred HHHHh-CcEEE--EEeCCh-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--c
Confidence 33556 55554 244432 234444554 5799999 3334455667888888877776 4799999999998633 4
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccC----CCCCHHHHHhccCCcEEEEccC
Q 006454 399 IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE----PVKELVDAVNAIKPTILIGTSG 473 (644)
Q Consensus 399 IA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~----~~~~L~eaV~~vkPtvLIG~S~ 473 (644)
+++-++.+..+ .|+ ++.++-.+|+.-.. + +-..-+.+++... -..++.|+++. .||+.-.+=
T Consensus 169 v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~W 234 (336)
T PRK03515 169 MGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDVW 234 (336)
T ss_pred HHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecCc
Confidence 77777776655 464 58888888774321 1 1111223343211 23689999997 999997643
No 408
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=44.30 E-value=84 Score=30.60 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+...+++|.|| |..|..+++.+++ .| -+++++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356679999996 5556666666543 25 358888774
No 409
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.23 E-value=35 Score=36.75 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888752 253 46889988643
No 410
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=44.21 E-value=28 Score=34.70 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
.|+|+|||.||+..|-.|.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877753 364 5778887643
No 411
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=44.06 E-value=5.9e+02 Score=30.63 Aligned_cols=156 Identities=14% Similarity=0.110 Sum_probs=85.0
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCC
Q 006454 456 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSP 527 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~--------aEct~edA~~wT~GraifASGSP 527 (644)
+.++-+.++|+++|..++.+ ++-.-+.+-.++-+|=|.+=.-||... .+-|.++++++... |+..-=
T Consensus 403 ~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~g 477 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQG 477 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcC
Confidence 33444557899999887754 444333333356677788888898742 34455665554321 111112
Q ss_pred CCCcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccCCCCCcccCCCCCchhhHHHHHHH
Q 006454 528 FDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAE 607 (644)
Q Consensus 528 F~pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vs~~IA~a 607 (644)
..||..+ ..||-.=|-.++|-+-=++.+..-- ++.+-+-.|.+.+ |.-..|+.-+..+-..+...
T Consensus 478 k~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 478 KTPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAK 542 (699)
T ss_pred CeEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHH
Confidence 3455552 4688888888888776665555433 4666666665421 11123444444455555666
Q ss_pred HHHHHHHc-CCCCCCCCchhHHHHHHh
Q 006454 608 VAAKAYEL-GLATRLPPPKDLVKYAES 633 (644)
Q Consensus 608 Va~~A~~~-GlA~~~~~p~dl~~~i~~ 633 (644)
+.+..+++ |- ....|+-+.+.+++
T Consensus 543 i~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 543 ISPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 65554432 22 22223445566655
No 412
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=44.02 E-value=46 Score=35.58 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=64.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
+||.++|-|..|--|++.|... +. +..+-.++.|+.. ++ .+.++...+...+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999887532 11 0123355556531 11 1223332344578888653 47
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIF---SLSNPTSQSECTAEEAYTWSQGRAIFASG 525 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF---aLSNPts~aEct~edA~~wT~GraifASG 525 (644)
||+++=+.++. ++.+-..+.+.+ ...=+|+ ||+++. =+-.-.++-+-.+++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988864 444444444432 2222222 233333 122222333445678888887
No 413
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=44.01 E-value=35 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 389 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 389 ~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
|+|||.+|+..|-.|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999888652 4 589999987443
No 414
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=43.76 E-value=31 Score=42.63 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC----Cccc
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIV 432 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~----GLi~ 432 (644)
-...||+|+|||.||+..|..|... |. ++.++|+. |++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEE
Confidence 4579999999999999999988753 63 57888875 6554
No 415
>PRK08339 short chain dehydrogenase; Provisional
Probab=43.69 E-value=97 Score=31.36 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|+++++||.||++ .|..+|+.++ + .|. ++.++|++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~----~-~G~-------~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLA----R-AGA-------DVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 357888999999853 4555555554 3 363 58888764
No 416
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=43.26 E-value=30 Score=37.32 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
...|+|+|||.||+-.|-.|.. .|+ ++.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 4579999999999998887765 374 57777776
No 417
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=43.06 E-value=28 Score=36.95 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977754 354 57778765
No 418
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.05 E-value=31 Score=36.98 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999877754 365 46777754
No 419
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=43.02 E-value=36 Score=35.66 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
+..||+++|+|.-|.-+++.|+.......++... .--+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCE
Confidence 4689999999999999999998752100011100 002899999873
No 420
>PRK07890 short chain dehydrogenase; Provisional
Probab=42.93 E-value=77 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+++++++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999844 455556665554 363 68888863
No 421
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=42.66 E-value=1.2e+02 Score=30.30 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=40.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhh-hhccccCCCCCHHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-PWAHEHEPVKELVDA 459 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~-~fA~~~~~~~~L~ea 459 (644)
.|++.++||.||+. ||...++..+.+ .| -+++++|++.- + +...+. .+.-+..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG----D---GQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc----c---cccCceEEEEccCCCHHHHHHH
Confidence 46788999999753 455555555554 36 35777776421 1 111111 111121222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 006454 460 VNAI-----KPTILIGTSGQ 474 (644)
Q Consensus 460 V~~v-----kPtvLIG~S~~ 474 (644)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999977664
No 422
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=42.48 E-value=31 Score=36.37 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 430 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GL 430 (644)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988764 25 35888888654
No 423
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=42.48 E-value=1.5e+02 Score=34.02 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc--CCCCCHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVD 458 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e 458 (644)
.+..+||+++|-|-.|+++|+.|.+. | -++++.|.+=. ...+..++...+. -..+...+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~~~-------~~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDRPA-------PEGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCCCC-------ccchhhhhhhccCceeecCccch
Confidence 34589999999999999999999763 5 35888886411 1111111111111 01111111
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCCCCCCcccCCee
Q 006454 459 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGSPFDPFEYGDNV 537 (644)
Q Consensus 459 aV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEct~edA~~wT-~GraifASGSPF~pV~~~Gk~ 537 (644)
...-..|++|=--|.+ .-++.|.++-+. .-||| +.-|-++... ....|-.||+ ||||
T Consensus 65 -~~~~~~d~vV~SPGi~-~~~p~v~~A~~~--gi~i~-----------~dieL~~r~~~~~p~vaITGT-------NGKT 122 (448)
T COG0771 65 -EDLAEFDLVVKSPGIP-PTHPLVEAAKAA--GIEII-----------GDIELFYRLSGEAPIVAITGT-------NGKT 122 (448)
T ss_pred -hccccCCEEEECCCCC-CCCHHHHHHHHc--CCcEE-----------eHHHHHHHhcCCCCEEEEECC-------CchH
Confidence 2222378887555555 235555554442 33343 3344455543 4566777886 7775
Q ss_pred e
Q 006454 538 F 538 (644)
Q Consensus 538 ~ 538 (644)
-
T Consensus 123 T 123 (448)
T COG0771 123 T 123 (448)
T ss_pred H
Confidence 4
No 424
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.32 E-value=66 Score=37.99 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=51.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccccCCCCCHHHHHhccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 464 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 464 (644)
+||.|+|+|..|..+|..+... |. ..+++.+|++ .++ ++..++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2458888874 111 111110 10000122356666653
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLS 499 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLS 499 (644)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66665 33333 34667777776532 333444344
No 425
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=42.32 E-value=33 Score=38.00 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999998887754 25 468888875
No 426
>PRK14852 hypothetical protein; Provisional
Probab=42.02 E-value=25 Score=43.65 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999998898888764 76 789999987
No 427
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=41.83 E-value=93 Score=37.25 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=60.8
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEeeCCCCC
Q 006454 458 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFASGSPFD 529 (644)
Q Consensus 458 eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEct~edA~~wT~GraifASGSPF~ 529 (644)
++=+.++|+++|..++.. ++-.-+.+...+-+|=|.+=.-||.. ..+-|.++.+++.-. |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333456899999877743 55444444444555668888999963 234444444443210 11111134
Q ss_pred CcccCCeeecccCCCccccchhhhHHHHHhCCcccCHHHHHHHH
Q 006454 530 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 573 (644)
Q Consensus 530 pV~~~Gk~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 573 (644)
||..+ ..||-.=|-..+|-+--++.+...- .+.+.+-+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 55542 6788888888888765554444433 5655555554
No 428
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.81 E-value=83 Score=31.13 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 379 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 379 g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..++++.+++|.||++ ||...++..+.+ .|. +++++|+.
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999742 455555555544 363 68888885
No 429
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=41.62 E-value=41 Score=35.89 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888764 25 468889875
No 430
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=41.60 E-value=71 Score=33.64 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=55.8
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc-ccCCCCCHHHH
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 459 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~ea 459 (644)
+++.+++|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 66777777776542 31 136888876421100000000000111111 22222457777
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 006454 460 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 499 (644)
Q Consensus 460 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 499 (644)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977665321 1 235667776665567888543
No 431
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=41.59 E-value=1.5e+02 Score=32.51 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=58.3
Q ss_pred HhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhh-----hhhcc-c
Q 006454 377 FLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-----KPWAH-E 449 (644)
Q Consensus 377 ~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k-----~~fA~-~ 449 (644)
-.++..+++||+|.|| |-.|..+++.|++ .| -+++.++++.--.... ....... ..+.. +
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G-------~~V~~l~R~~~~~~~~-~~~~~~~~~~~~v~~v~~D 119 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RG-------YNVVAVAREKSGIRGK-NGKEDTKKELPGAEVVFGD 119 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEEechhhcccc-chhhHHhhhcCCceEEEee
Confidence 3456677899999997 7778888877764 25 3577777642100000 0000000 01111 2
Q ss_pred cCCCCCHHHHHhcc--CCcEEEEccCCC--C---CC------CHHHHHHHHcCCCCcEEE
Q 006454 450 HEPVKELVDAVNAI--KPTILIGTSGQG--R---TF------TKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 450 ~~~~~~L~eaV~~v--kPtvLIG~S~~~--g---~F------teevv~~Ma~~~erPIIF 496 (644)
-.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+
T Consensus 120 l~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 120 VTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 22234677778765 699998544322 1 11 346777776655555666
No 432
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=41.36 E-value=2.1e+02 Score=30.83 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=80.3
Q ss_pred HHhcCCCccceecccCCCCcHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 006454 322 KQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 400 (644)
Q Consensus 322 ~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA 400 (644)
-.+| .++++= -... +.+.+.+.+| .++|++|- |-..-=.=+|+=++.-.+..|. +++.||.++|-.. -++
T Consensus 91 ls~y-~D~iv~--R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~---~v~ 161 (304)
T TIGR00658 91 LSRY-VDGIMA--RVYK-HEDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN---NVC 161 (304)
T ss_pred HHHh-CCEEEE--ECCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC---chH
Confidence 3456 455442 3432 3344455555 46899994 3333445678887777666664 9999999999863 488
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-c---CCCCCHHHHHhccCCcEEEEcc
Q 006454 401 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIGTS 472 (644)
Q Consensus 401 ~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~---~~~~~L~eaV~~vkPtvLIG~S 472 (644)
+-++.++.+ .|+ ++.++-.+++.-.. .+....+.+++. + ....++.|+++. .||+.-.+
T Consensus 162 ~Sl~~~l~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 162 NSLMLAGAK-LGM-------DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred HHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 888877765 464 68888888773321 111122233332 1 123689999997 99998754
No 433
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=41.28 E-value=27 Score=36.89 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEEeCcChHHHHHHHHHHH
Q 006454 387 FLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~ 405 (644)
|+|+|||.||+..|-.|.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSR 20 (382)
T ss_pred EEEECccHHHHHHHHHHhc
Confidence 7999999999999988875
No 434
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=41.19 E-value=1.1e+02 Score=31.97 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=47.1
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc-cCCCccCCch------hhhhhcc-ccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQH------FKKPWAH-EHE 451 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi-~~~R~~~L~~------~k~~fA~-~~~ 451 (644)
+++..+++|.|| |-.|..+++.|+. .|. +++.+|+..-- ...+.+.+.. .+..|-+ +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 466789999997 7788888777764 253 57777664210 0000000100 0011111 222
Q ss_pred CCCCHHHHHhccCCcEEEEccCC
Q 006454 452 PVKELVDAVNAIKPTILIGTSGQ 474 (644)
Q Consensus 452 ~~~~L~eaV~~vkPtvLIG~S~~ 474 (644)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888899999988875
No 435
>PLN02463 lycopene beta cyclase
Probab=41.14 E-value=31 Score=38.89 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=25.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999987754 364 57788874
No 436
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=41.12 E-value=32 Score=38.05 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888765 35 478899975
No 437
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.01 E-value=34 Score=40.02 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999988865 363 689999874
No 438
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=40.97 E-value=30 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977653 364 478888763
No 439
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=40.91 E-value=1.5e+02 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 381 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 381 ~L~d~riv~~GAGs-AG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
.+++.+++|.||++ .|..+|+.++ + .|. +++++|++-
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~----~-~G~-------~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFV----E-AGA-------KVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-CCC-------EEEEEecch
Confidence 47788999999854 4555555553 3 353 577787764
No 440
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.81 E-value=40 Score=40.18 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
-...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 4578999999999999999988653 5 368889874
No 441
>PRK12831 putative oxidoreductase; Provisional
Probab=40.79 E-value=36 Score=38.25 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 567999999999999999888753 5 357888864
No 442
>PRK08013 oxidoreductase; Provisional
Probab=40.78 E-value=34 Score=36.97 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=24.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999877654 365 46677764
No 443
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=40.69 E-value=31 Score=38.06 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 478999999999999988764
No 444
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.39 E-value=44 Score=36.78 Aligned_cols=85 Identities=11% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhc-----
Q 006454 373 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA----- 447 (644)
Q Consensus 373 ~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA----- 447 (644)
.++.-....|.+.|++++|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+.
T Consensus 276 ~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v 339 (410)
T cd01968 276 PELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVI 339 (410)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEE
Confidence 334444456678999999988888999987643 4873 2233211 1111 11111111110
Q ss_pred cccCCCCCHHHHHhccCCcEEEEccC
Q 006454 448 HEHEPVKELVDAVNAIKPTILIGTSG 473 (644)
Q Consensus 448 ~~~~~~~~L~eaV~~vkPtvLIG~S~ 473 (644)
-...+...+.+.++..+||++||-|.
T Consensus 340 ~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 340 VDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124668888999999999755
No 445
>PRK06398 aldose dehydrogenase; Validated
Probab=40.35 E-value=1.6e+02 Score=29.56 Aligned_cols=74 Identities=14% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc-ccCCCCCHHHH
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 459 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~ea 459 (644)
+|++++++|.||.+ ||...++..+.+ .| .+++++|++- .+ .. +..+.+ +..+..++.++
T Consensus 3 ~l~gk~vlItGas~---gIG~~ia~~l~~-~G-------~~Vi~~~r~~----~~---~~--~~~~~~~D~~~~~~i~~~ 62 (258)
T PRK06398 3 GLKDKVAIVTGGSQ---GIGKAVVNRLKE-EG-------SNVINFDIKE----PS---YN--DVDYFKVDVSNKEQVIKG 62 (258)
T ss_pred CCCCCEEEEECCCc---hHHHHHHHHHHH-CC-------CeEEEEeCCc----cc---cC--ceEEEEccCCCHHHHHHH
Confidence 46788999999742 344444444443 35 3677777641 11 11 111111 22222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 006454 460 VNAI-----KPTILIGTSGQ 474 (644)
Q Consensus 460 V~~v-----kPtvLIG~S~~ 474 (644)
++.+ ++|+||=..+.
T Consensus 63 ~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 63 IDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 5543 68999976654
No 446
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=40.24 E-value=34 Score=39.22 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+-.|+|+|+|..|++||..|... |+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 64 57888875
No 447
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.22 E-value=35 Score=42.63 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
-+.+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4568999999999999999998652 53 57888865
No 448
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=40.14 E-value=42 Score=36.49 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=25.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 432 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~ 432 (644)
|+|+|||.||+.+|-.|.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 78999999999999777643 124 3577787764433
No 449
>PRK10262 thioredoxin reductase; Provisional
Probab=40.02 E-value=29 Score=36.17 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 006454 382 LADQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~ 405 (644)
-+..+|||+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999888765
No 450
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=40.02 E-value=1e+02 Score=29.71 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+.+.++||.|| |..|..+++.+. + +|. ++++++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~----~-~g~-------~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLA----A-DGA-------KVVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 45678999997 445555555554 3 353 47888774
No 451
>PRK08244 hypothetical protein; Provisional
Probab=39.99 E-value=34 Score=38.16 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988865
No 452
>PRK07326 short chain dehydrogenase; Provisional
Probab=39.93 E-value=1e+02 Score=29.91 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 382 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 382 L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+.+.+++|.|| |..|..+|+.++. .|. ++++++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~-----~g~-------~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLA-----EGY-------KVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHH-----CCC-------EEEEeeCC
Confidence 45688999997 6667777766643 353 58888774
No 453
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=39.90 E-value=37 Score=37.80 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=26.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999998887652 5 579999975
No 454
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.84 E-value=50 Score=37.95 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=47.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc---cCCCCCH
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 456 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 456 (644)
..|...|++|+|-++-..|+++.+... .|+. +..++.. .....+.+.+.-+.+..+ .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678889999999999999999998765 4873 2233321 100000011111111111 1122357
Q ss_pred HHHHhccCCcEEEEcc
Q 006454 457 VDAVNAIKPTILIGTS 472 (644)
Q Consensus 457 ~eaV~~vkPtvLIG~S 472 (644)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 7889999999999966
No 455
>PRK09242 tropinone reductase; Provisional
Probab=39.78 E-value=1.2e+02 Score=30.01 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++++++|.||++ ||...++..+.+ .|. ++++++++
T Consensus 6 ~~~~k~~lItGa~~---gIG~~~a~~l~~-~G~-------~v~~~~r~ 42 (257)
T PRK09242 6 RLDGQTALITGASK---GIGLAIAREFLG-LGA-------DVLIVARD 42 (257)
T ss_pred ccCCCEEEEeCCCc---hHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 46788999999843 344444444443 363 58888874
No 456
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=39.75 E-value=31 Score=40.47 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC-cccCCCc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRL 436 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G-Li~~~R~ 436 (644)
++..|+|+|||.||+..|-.|... .|+ ++.++|++- ....+|.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA 74 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQA 74 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCee
Confidence 356899999999999998887641 265 367788763 3333443
No 457
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.69 E-value=1.4e+02 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEecCC
Q 006454 464 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 500 (644)
Q Consensus 464 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 500 (644)
+.|++|++|-.|. |+|+++.+. +...-||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4699999999885 899998864 33334555 4554
No 458
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=39.64 E-value=32 Score=36.62 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 58888875
No 459
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=39.39 E-value=36 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 427 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs 427 (644)
.+||+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888652 5 46889998
No 460
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=39.37 E-value=1.5e+02 Score=32.12 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=69.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHH--HhcCCChhhhcCeEEEEccCCcccCCC--ccCC-chhhhhhccccCCCCCHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEIS--KQTNMPLEETRKKIWLVDSKGLIVSSR--LESL-QHFKKPWAHEHEPVKELVD 458 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~--~~~Gls~eeAr~~i~lvDs~GLi~~~R--~~~L-~~~k~~fA~~~~~~~~L~e 458 (644)
...+.++|+|-.|-..-++|+..=. ...+++ .+-+-++|+++++.... +.+| .++|...+......-+|.+
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~----~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~alsLda 78 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVH----INVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSALSLDA 78 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceE----EEEEEEecccccccccccChhhhchHHHHHHHHhcCCcccHHH
Confidence 4568899999999999999876421 111221 23467899999987643 1234 4566666654434345666
Q ss_pred HHhcc----CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 006454 459 AVNAI----KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 501 (644)
Q Consensus 459 aV~~v----kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 501 (644)
.|.++ +|-+|+-.++ +.++.+..-+..+.-|-.++.|-
T Consensus 79 Lia~L~~sp~p~ilVDnta-----S~~ia~~y~Kfv~~gi~IatpNK 120 (364)
T KOG0455|consen 79 LIAKLLGSPTPLILVDNTA-----SMEIAEIYMKFVDLGICIATPNK 120 (364)
T ss_pred HHHHHcCCCCceEEEeccc-----HHHHHHHHHHHHhcCceEecCCc
Confidence 66554 3444444444 67888776677777787777773
No 461
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=39.37 E-value=24 Score=32.68 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=24.8
Q ss_pred CchhhhHHHHHHHHHHHHH---hcCCCccceecccC
Q 006454 305 AIGQEYAELLHEFMTAVKQ---NYGERILIQVFEDF 337 (644)
Q Consensus 305 ~~g~eY~~fidefv~Av~~---~fGp~~lIq~fEDf 337 (644)
.+.++||.|+|+|+..|.+ .||..-..+ ||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~-~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQ-WEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccC-EeEE
Confidence 5678999999999998887 466655556 6665
No 462
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=39.32 E-value=39 Score=37.19 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877652 5 578889983
No 463
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=39.32 E-value=39 Score=39.71 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=26.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
...||+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999988864 253 57778764
No 464
>PRK14694 putative mercuric reductase; Provisional
Probab=39.29 E-value=40 Score=37.56 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888753 5 468899974
No 465
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=39.28 E-value=36 Score=37.77 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999888865 25 469999975
No 466
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=39.20 E-value=37 Score=36.40 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|+|+|||-+|+-+|-.+.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988764 24 368888885
No 467
>PRK06185 hypothetical protein; Provisional
Probab=39.14 E-value=36 Score=36.52 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877654 365 477788763
No 468
>PRK07588 hypothetical protein; Provisional
Probab=39.13 E-value=37 Score=36.37 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.0
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~ 405 (644)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999987764
No 469
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.98 E-value=33 Score=38.66 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
..|||+|+|.+|+++|..+.. .|+ ++.|++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 579999999999999999875 365 488898763
No 470
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=38.98 E-value=34 Score=35.93 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=23.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999977764 364 466777763
No 471
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=38.93 E-value=39 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 382 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 382 L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
+++++||++|+|..|+-||..|... -++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5789999999999999999888653 26788876654
No 472
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=38.91 E-value=45 Score=35.00 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 45689999999999999888764 54 68888886433
No 473
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.86 E-value=82 Score=30.63 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 372 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 372 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+.++...+.-..+++++++|+|+.|..++++... .| .+++.++++
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3445555544568899999999866555544432 34 357777664
No 474
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=38.79 E-value=2.4e+02 Score=28.66 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=28.9
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 455 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
++.+.+.. .|++|-.|...-.|.--++++|+ +..|+|.
T Consensus 256 ~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a--~G~PvI~ 293 (355)
T cd03819 256 DMPAAYAL--ADIVVSASTEPEAFGRTAVEAQA--MGRPVIA 293 (355)
T ss_pred cHHHHHHh--CCEEEecCCCCCCCchHHHHHHh--cCCCEEE
Confidence 45566665 89999887444468889999998 6889986
No 475
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.78 E-value=37 Score=37.81 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcc-----
Q 006454 374 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----- 448 (644)
Q Consensus 374 Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~----- 448 (644)
++.-....|..+|+.++|-..-.+++++.|.+ .|+.... .+.+. ......+.-+.+..
T Consensus 293 ~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-----~~~~~-------~~~~~~~~~~~~l~~~~~~ 355 (435)
T cd01974 293 AMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-----VLTGN-------GGKRFEKEMQALLDASPYG 355 (435)
T ss_pred HHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE-----EEeCC-------CCHHHHHHHHHHHhhcCCC
Confidence 33334456788999999988888999998874 3873211 11111 11111111111111
Q ss_pred ------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 006454 449 ------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 502 (644)
Q Consensus 449 ------~~~~~~~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 502 (644)
...+...+++.++..+||++||-|-. +.+++...-|.| ..+.|.
T Consensus 356 ~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 356 AGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 11222457888899999999997641 233333355653 455554
No 476
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=38.76 E-value=39 Score=35.11 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 431 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi 431 (644)
.+-.++|+|||.||+..|-.+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999877754 35 468888887543
No 477
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.72 E-value=1.6e+02 Score=32.93 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=27.6
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 455 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 455 ~L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
++.+.+.. .|+++=.|-.. .|.--++++|+ +.+|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS~~E-g~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTSISE-GQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCchhh-cCChHHHHHHH--cCCCEEE
Confidence 35555654 88888666543 58889999999 6889988
No 478
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.71 E-value=78 Score=35.33 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhh-----
Q 006454 371 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP----- 445 (644)
Q Consensus 371 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~----- 445 (644)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455666667888999999998766555565533 3358732 111 0000000 001111100
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccC
Q 006454 446 WAHEHEPVKELVDAVNAIKPTILIGTSG 473 (644)
Q Consensus 446 fA~~~~~~~~L~eaV~~vkPtvLIG~S~ 473 (644)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0001122246888999999999999765
No 479
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=38.70 E-value=20 Score=39.45 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=29.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh---cCCChhhhcC----eEEEEccCCcc
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQ---TNMPLEETRK----KIWLVDSKGLI 431 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~---~Gls~eeAr~----~i~lvDs~GLi 431 (644)
++|+|+|||-||+..|..|.+..... .-++.=||+. +++-+...|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997642100 1245556665 34544444443
No 480
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=38.69 E-value=31 Score=37.15 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999987754 364 57778775
No 481
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=38.51 E-value=1.8e+02 Score=33.25 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 456 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 456 L~eaV~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
+.+..+. .++++=.|-.- .|.--++++|| +..|+|-
T Consensus 386 ~~~~~~~--adv~v~pS~~E-gfgl~~lEAma--~G~PVI~ 421 (500)
T TIGR02918 386 LSEVYKD--YELYLSASTSE-GFGLTLMEAVG--SGLGMIG 421 (500)
T ss_pred HHHHHHh--CCEEEEcCccc-cccHHHHHHHH--hCCCEEE
Confidence 4455554 78888777644 59999999998 6778776
No 482
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=38.45 E-value=39 Score=37.12 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
-.+||+|+|.||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999888752 4 468999975
No 483
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=38.10 E-value=2.8e+02 Score=30.55 Aligned_cols=137 Identities=12% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCccceecccCCCCcHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCc
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGA 392 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g-~~L~d~riv~~GA 392 (644)
.+.+.. -.+| .++++ .-.+. +.+.+.+.+| .++||.|- |...-=.=+||=++.-.+..| +.+++.+|.++|-
T Consensus 91 ~Dtarv-ls~y-~D~iv--iR~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 91 KDTARV-LGRM-YDGIQ--YRGHG-QEVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHH-HHHh-CCEEE--EECCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 333433 3456 44443 23433 2344555555 47899993 223344557788888777776 4699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-CC---CCCHHHHHhccCCcEE
Q 006454 393 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP---VKELVDAVNAIKPTIL 468 (644)
Q Consensus 393 GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~---~~~L~eaV~~vkPtvL 468 (644)
+.- .+++-++.++.+ .|+ +++++-.+|+--.. + .-+.-+.+++.. .. ..++.|+++. .||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 742 377777766655 475 68888888763321 1 111112333321 11 3689999997 9999
Q ss_pred EEcc
Q 006454 469 IGTS 472 (644)
Q Consensus 469 IG~S 472 (644)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9765
No 484
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=38.09 E-value=37 Score=36.61 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 468899986
No 485
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=37.99 E-value=41 Score=36.23 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.7
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 006454 384 DQRFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~ 405 (644)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999877764
No 486
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.93 E-value=55 Score=36.70 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=55.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh---hhhhcc-ccCCCCCHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAH-EHEPVKELVDAV 460 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~---k~~fA~-~~~~~~~L~eaV 460 (644)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+..+.+... +..... +..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998752 32 589998883 1111111111 111221 344556799999
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHc
Q 006454 461 NAIKPTILIGTSGQGRTFTKEVVEAMAS 488 (644)
Q Consensus 461 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 488 (644)
++ .++.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 97 588886654 4578888877654
No 487
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=37.91 E-value=27 Score=43.44 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 380 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 380 ~~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
++|++.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 467889999999999999999999875 76 7899999873
No 488
>PRK09897 hypothetical protein; Provisional
Probab=37.83 E-value=41 Score=38.98 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
+|+|+|||.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12469999984
No 489
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=37.82 E-value=41 Score=36.32 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977654 365 47777774
No 490
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.72 E-value=49 Score=30.53 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 006454 387 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 429 (644)
Q Consensus 387 iv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~G 429 (644)
|+|+|||+.|.-+|-.|.++ | .+++++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999988888652 4 5688888865
No 491
>PLN02568 polyamine oxidase
Probab=37.66 E-value=21 Score=41.10 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 006454 383 ADQRFLFLGAGEAGTGIAELIALE 406 (644)
Q Consensus 383 ~d~riv~~GAGsAG~GIA~ll~~~ 406 (644)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 492
>PRK05875 short chain dehydrogenase; Provisional
Probab=37.62 E-value=1.3e+02 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GA-GsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
++++.++||.|| |..|..+|+.++ + .|. ++++++++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~----~-~G~-------~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLV----A-AGA-------AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 467789999997 455555555554 3 353 58888764
No 493
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=37.59 E-value=3e+02 Score=30.22 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=79.1
Q ss_pred HHhcCCCccceecccCCCCcHHHHHHHHcCCCceeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHH
Q 006454 322 KQNYGERILIQVFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 400 (644)
Q Consensus 322 ~~~fGp~~lIq~fEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA 400 (644)
-.+| .++++= -.+. +.+.+.+.+| .++||.|- |-..-=.=+||=++.-.+.. +.|++.||+++|.+.- +++
T Consensus 98 ls~y-~D~ivi--R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~ 169 (331)
T PRK02102 98 LGRM-YDGIEY--RGFK-QEIVEELAKY-SGVPVWNGLTDEWHPTQMLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMA 169 (331)
T ss_pred Hhhc-CCEEEE--ECCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHH
Confidence 3567 555542 4443 3344455555 46899992 22334445677777655555 4699999999999853 488
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhccc-cCC---CCCHHHHHhccCCcEEEEcc
Q 006454 401 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP---VKELVDAVNAIKPTILIGTS 472 (644)
Q Consensus 401 ~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~---~~~L~eaV~~vkPtvLIG~S 472 (644)
+-++..+.+ .|+ ++.++-.+|+.-.. + +-+.-+.+++. +.. ..++.|+++. .||+.-.+
T Consensus 170 ~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 170 NSLMVGGAK-LGM-------DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred HHHHHHHHH-cCC-------EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 888777665 464 58888888763321 1 11111233322 111 3689999997 99998753
No 494
>PRK11445 putative oxidoreductase; Provisional
Probab=37.43 E-value=29 Score=36.93 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.2
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 006454 386 RFLFLGAGEAGTGIAELIAL 405 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~ 405 (644)
.|+|+|||.||...|-.|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987754
No 495
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.39 E-value=28 Score=39.10 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=27.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 384 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 384 d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+||||+|+|-+|+-.|..+.... . .-+|.|||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 589999999999999998886532 1 2358899985
No 496
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=37.24 E-value=40 Score=35.57 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 386 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 386 riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 48999999999999988864 25 358888875
No 497
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=37.16 E-value=1.1e+02 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCccceecccCCCC-----cHHHHHHHHcCCCceeecCCcchH
Q 006454 315 HEFMTAVKQNYGERILIQVFEDFANH-----NAFDLLEKYGTTHLVFNDDIQGTA 364 (644)
Q Consensus 315 defv~Av~~~fGp~~lIq~fEDf~~~-----nAf~lL~ryr~~~~~FNDDiQGTa 364 (644)
-+.+++.-+.|....+|+ |++.. ..++++.+|.-.+++.+.|.+|+.
T Consensus 79 ~~v~eaaL~~~~G~~iIN---sIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P 130 (261)
T PRK07535 79 PAAIEAGLKVAKGPPLIN---SVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIP 130 (261)
T ss_pred HHHHHHHHHhCCCCCEEE---eCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 455665555564567888 77764 357889999999998888878865
No 498
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.16 E-value=2.1e+02 Score=29.12 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=24.0
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 006454 465 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 496 (644)
Q Consensus 465 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 496 (644)
.|+++-.|.....|.-.++++|+ +..|+|-
T Consensus 268 ad~~v~ps~~~e~~~~~~~EAma--~G~PvI~ 297 (363)
T cd04955 268 AALFYLHGHSVGGTNPSLLEAMA--YGCPVLA 297 (363)
T ss_pred CCEEEeCCccCCCCChHHHHHHH--cCCCEEE
Confidence 68888777763568889999998 6888885
No 499
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=37.08 E-value=44 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 006454 381 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 428 (644)
Q Consensus 381 ~L~d~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~ 428 (644)
.+++.++||.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36778999999753 344445555544 363 58888874
No 500
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=36.99 E-value=1e+02 Score=35.50 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=63.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhhhhhcccc-C---CCCCHHHHH
Q 006454 385 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAV 460 (644)
Q Consensus 385 ~riv~~GAGsAG~GIA~ll~~~m~~~~Gls~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV 460 (644)
.+|=|+|-|..|.++|.-|+.. |. ++++.|+. .++ .+++...+++.. . ...++.|++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v 67 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFV 67 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHH
Confidence 3689999999999999999753 64 57777873 222 233333222211 1 346899999
Q ss_pred hcc-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 006454 461 NAI-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 502 (644)
Q Consensus 461 ~~v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 502 (644)
+.+ +|+++| ++=..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 68 ~~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 68 LSIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred hcCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 765 588888 333344556677655443 34677999999854
Done!