BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006457
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 18 KHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFP 77
K + N+ + +++ N + +++ +LA GD ++ F ++L P R+ +
Sbjct: 87 KQLNHPNVIKYYASFIEDNEL----NIVLELADAGDLSRMIKHFKKQKRL--IPERTVWK 140
Query: 78 CAIKSCSALHDLHSGKQAHQ 97
++ CSAL +HS + H+
Sbjct: 141 YFVQLCSALEHMHSRRVMHR 160
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 535 LRGKVHAFLVGDKEH-----------------PQHEKIYE--------YLEELNVKLQEV 569
LR V+ VGDKE PQ E+ E Y+ +N ++++
Sbjct: 641 LRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDL 700
Query: 570 GYVTDMTSVIHDVDQEEKEMTLRIHSEKLANLRVCGDCHTVIRLISKVVDREIVVRDS-- 627
T M +I++ KE I SE LANL CGD +T++ ++ R RD
Sbjct: 701 MPKTIMHLMINNT----KEF---IFSELLANLYSCGDQNTLMEESAEQAQR----RDEML 749
Query: 628 KRFHYFKDGLCSCGD 642
+ +H K+ L GD
Sbjct: 750 RMYHALKEALSIIGD 764
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 535 LRGKVHAFLVGDKEH-----------------PQHEKIYE--------YLEELNVKLQEV 569
LR V+ VGDKE PQ E+ E Y+ +N ++++
Sbjct: 618 LRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDL 677
Query: 570 GYVTDMTSVIHDVDQEEKEMTLRIHSEKLANLRVCGDCHTVIRLISKVVDREIVVRDS-- 627
T M +I++ KE I SE LANL CGD +T++ ++ R RD
Sbjct: 678 MPKTIMHLMINNT----KEF---IFSELLANLYSCGDQNTLMEESAEQAQR----RDEML 726
Query: 628 KRFHYFKDGLCSCGD 642
+ +H K+ L GD
Sbjct: 727 RMYHALKEALSIIGD 741
>pdb|2G0W|A Chain A, Crystal Structure Of A Putative Sugar Isomerase (Lmo2234)
From Listeria Monocytogenes At 1.70 A Resolution
pdb|2G0W|B Chain B, Crystal Structure Of A Putative Sugar Isomerase (Lmo2234)
From Listeria Monocytogenes At 1.70 A Resolution
Length = 296
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 517 SLMKNRRLAKTPGFSLVELRGK--VHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTD 574
S K ++A GF + LR + V A G + E L+E N K+ EV Y+T
Sbjct: 37 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTD----EDXLRILDEHNXKVTEVEYITQ 92
Query: 575 M-TSVIHDVDQEEKEMTLRIHSEKLANLRVCGDCHTVIRLISKVVDREIVV 624
T+ +Q++KE T H +L ++ H L+ K+ + +I+V
Sbjct: 93 WGTAEDRTAEQQKKEQTT-FHXARLFGVK-----HINCGLLEKIPEEQIIV 137
>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
Length = 293
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 258 NSIIAIYAQNGLAAEALDVFDQMVKSTD 285
N+I IYA+NG + +D+F+Q++K +
Sbjct: 159 NAIANIYAENGYLKKGIDLFEQILKQLE 186
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 315 QVIKMDLEESVIV-GTSIIDM---YCKCGQVDL---ARKAFNQMKEKNVRSWTAMIAGY- 366
+ I+M +E+ ++V G ++D+ Y K G++ L A + + + + GY
Sbjct: 122 EFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181
Query: 367 ---GMHCRAREALDLFYKMIKAGV 387
G+ R RE DL+++MI++GV
Sbjct: 182 VFAGVGERTREGNDLYHEMIESGV 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,866,854
Number of Sequences: 62578
Number of extensions: 721232
Number of successful extensions: 1980
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1978
Number of HSP's gapped (non-prelim): 7
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)